Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013139
(1123 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030228.1| transmembrane protein 111 [Bos taurus]. 441 e-132
>ref|NP_001030228.1| transmembrane protein 111 [Bos taurus].
Length = 261
Score = 441 bits (1135), Expect(2) = e-132
Identities = 223/239 (93%), Positives = 224/239 (93%)
Frame = +3
Query: 201 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 380
MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 381 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVXXXXXXXXXXXXXXXKGNVTNVLP 560
LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVV KGNVTNVLP
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPVTDPTMLTDMMKGNVTNVLP 120
Query: 561 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 740
MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR
Sbjct: 121 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 180
Query: 741 SIYSLILGQDNAADQSRMMQEQMTGAAVAMPADTNKAFKTEWEALELTDHQWALDDVEE 917
SIYSLILGQDNAADQSRMMQEQMTGAA+AMPADTNKAFKTEWEALELTDHQWALDDVEE
Sbjct: 181 SIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE 239
Score = 48.5 bits (114), Expect(2) = e-132
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 913 KKELMAKDLHFEGMFKKELQTSIF 984
++ELMAKDLHFEGMFKKELQTSIF
Sbjct: 238 EEELMAKDLHFEGMFKKELQTSIF 261
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,901,516
Number of extensions: 1145721
Number of successful extensions: 4083
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4071
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,240,222
Effective search space: 3844859940
Effective search space used: 3844859940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013139
(1123 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533744.1| PREDICTED: similar to 30 kDa protein isoform 1 ... 441 e-132
Alignment gi|XP_861549.1| PREDICTED: similar to 30 kDa protein isoform 2 ... 346 8e-99
Alignment gi|XP_849637.1| PREDICTED: similar to 30 kDa protein [Canis fam... 211 1e-62
>ref|XP_533744.1| PREDICTED: similar to 30 kDa protein isoform 1 [Canis familiaris].
Length = 261
Score = 441 bits (1135), Expect(2) = e-132
Identities = 223/239 (93%), Positives = 224/239 (93%)
Frame = +3
Query: 201 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 380
MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 381 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVXXXXXXXXXXXXXXXKGNVTNVLP 560
LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVV KGNVTNVLP
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLP 120
Query: 561 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 740
MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR
Sbjct: 121 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 180
Query: 741 SIYSLILGQDNAADQSRMMQEQMTGAAVAMPADTNKAFKTEWEALELTDHQWALDDVEE 917
SIYSLILGQDNAADQSRMMQEQMTGAA+AMPADTNKAFKTEWEALELTDHQWALDDVEE
Sbjct: 181 SIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE 239
Score = 48.5 bits (114), Expect(2) = e-132
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 913 KKELMAKDLHFEGMFKKELQTSIF 984
++ELMAKDLHFEGMFKKELQTSIF
Sbjct: 238 EEELMAKDLHFEGMFKKELQTSIF 261
>ref|XP_861549.1| PREDICTED: similar to 30 kDa protein isoform 2 [Canis familiaris].
Length = 207
Score = 346 bits (888), Expect(2) = 8e-99
Identities = 176/191 (92%), Positives = 176/191 (92%)
Frame = +3
Query: 201 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 380
MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 381 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVXXXXXXXXXXXXXXXKGNVTNVLP 560
LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVV KGNVTNVLP
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLP 120
Query: 561 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 740
MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR
Sbjct: 121 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 180
Query: 741 SIYSLILGQDN 773
SIYSLILGQDN
Sbjct: 181 SIYSLILGQDN 191
Score = 33.9 bits (76), Expect(2) = 8e-99
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 857 DRVGSFGADRSPVGTR 904
DRVGSFGAD SPVGTR
Sbjct: 192 DRVGSFGADGSPVGTR 207
>ref|XP_849637.1| PREDICTED: similar to 30 kDa protein [Canis familiaris].
Length = 132
Score = 211 bits (536), Expect(2) = 1e-62
Identities = 105/110 (95%), Positives = 108/110 (98%)
Frame = +3
Query: 588 MTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILGQ 767
MTFSGFVTTKVPFPLTL FKPMLQQGIELLTLDAS VSSASWYFL+VFGLRSIYSLILGQ
Sbjct: 1 MTFSGFVTTKVPFPLTLCFKPMLQQGIELLTLDASRVSSASWYFLSVFGLRSIYSLILGQ 60
Query: 768 DNAADQSRMMQEQMTGAAVAMPADTNKAFKTEWEALELTDHQWALDDVEE 917
DNAADQS+MMQEQMTGAA+AMPADTNKAFKTEWEALELTDHQWALDDVEE
Sbjct: 61 DNAADQSQMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE 110
Score = 48.5 bits (114), Expect(2) = 1e-62
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 913 KKELMAKDLHFEGMFKKELQTSIF 984
++ELMAKDLHFEGMFKKELQTSIF
Sbjct: 109 EEELMAKDLHFEGMFKKELQTSIF 132
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,743,944
Number of extensions: 1184755
Number of successful extensions: 4453
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4414
Number of HSP's successfully gapped: 6
Length of query: 374
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 270
Effective length of database: 15,407,560
Effective search space: 4160041200
Effective search space used: 4160041200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013139
(1123 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358565.1| PREDICTED: transmembrane protein 111 [Sus sc... 442 e-132
>ref|XP_003358565.1| PREDICTED: transmembrane protein 111 [Sus scrofa].
Length = 261
Score = 442 bits (1138), Expect(2) = e-132
Identities = 224/239 (93%), Positives = 224/239 (93%)
Frame = +3
Query: 201 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 380
MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 381 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVXXXXXXXXXXXXXXXKGNVTNVLP 560
LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVV KGNVTNVLP
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLP 120
Query: 561 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 740
MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR
Sbjct: 121 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 180
Query: 741 SIYSLILGQDNAADQSRMMQEQMTGAAVAMPADTNKAFKTEWEALELTDHQWALDDVEE 917
SIYSLILGQDNAADQSRMMQEQMTGAAVAMPADTNKAFKTEWEALELTDHQWALDDVEE
Sbjct: 181 SIYSLILGQDNAADQSRMMQEQMTGAAVAMPADTNKAFKTEWEALELTDHQWALDDVEE 239
Score = 48.5 bits (114), Expect(2) = e-132
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 913 KKELMAKDLHFEGMFKKELQTSIF 984
++ELMAKDLHFEGMFKKELQTSIF
Sbjct: 238 EEELMAKDLHFEGMFKKELQTSIF 261
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,028,333
Number of extensions: 737580
Number of successful extensions: 2646
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2636
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,854,232
Effective search space: 2426059568
Effective search space used: 2426059568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013139
(1123 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780310.1| transmembrane protein 111 [Mus musculus]. 441 e-131
>ref|NP_780310.1| transmembrane protein 111 [Mus musculus].
Length = 261
Score = 441 bits (1135), Expect(2) = e-131
Identities = 223/239 (93%), Positives = 224/239 (93%)
Frame = +3
Query: 201 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 380
MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 381 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVXXXXXXXXXXXXXXXKGNVTNVLP 560
LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVV KGNVTNVLP
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLP 120
Query: 561 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 740
MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR
Sbjct: 121 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 180
Query: 741 SIYSLILGQDNAADQSRMMQEQMTGAAVAMPADTNKAFKTEWEALELTDHQWALDDVEE 917
SIYSLILGQDNAADQSRMMQEQMTGAA+AMPADTNKAFKTEWEALELTDHQWALDDVEE
Sbjct: 181 SIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE 239
Score = 47.4 bits (111), Expect(2) = e-131
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +1
Query: 913 KKELMAKDLHFEGMFKKELQTSIF 984
++ELMA+DLHFEGMFKKELQTSIF
Sbjct: 238 EEELMARDLHFEGMFKKELQTSIF 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,286,575
Number of extensions: 965544
Number of successful extensions: 3360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3349
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 271
Effective length of database: 12,523,851
Effective search space: 3393963621
Effective search space used: 3393963621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013139
(1123 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060917.1| transmembrane protein 111 [Homo sapiens]. 441 e-132
>ref|NP_060917.1| transmembrane protein 111 [Homo sapiens].
Length = 261
Score = 441 bits (1135), Expect(2) = e-132
Identities = 223/239 (93%), Positives = 224/239 (93%)
Frame = +3
Query: 201 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 380
MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV
Sbjct: 1 MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRV 60
Query: 381 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVXXXXXXXXXXXXXXXKGNVTNVLP 560
LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVV KGNVTNVLP
Sbjct: 61 LRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLP 120
Query: 561 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 740
MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR
Sbjct: 121 MILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLR 180
Query: 741 SIYSLILGQDNAADQSRMMQEQMTGAAVAMPADTNKAFKTEWEALELTDHQWALDDVEE 917
SIYSLILGQDNAADQSRMMQEQMTGAA+AMPADTNKAFKTEWEALELTDHQWALDDVEE
Sbjct: 181 SIYSLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE 239
Score = 48.5 bits (114), Expect(2) = e-132
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1
Query: 913 KKELMAKDLHFEGMFKKELQTSIF 984
++ELMAKDLHFEGMFKKELQTSIF
Sbjct: 238 EEELMAKDLHFEGMFKKELQTSIF 261
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,852,616
Number of extensions: 1155877
Number of successful extensions: 4125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4115
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,868,908
Effective search space: 4014605160
Effective search space used: 4014605160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013139
(1123 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 694 0.0
Sscrofa_Chr06 96 5e-17
>Sscrofa_Chr13
|| Length = 218635234
Score = 694 bits (350), Expect = 0.0
Identities = 350/350 (100%)
Strand = Plus / Minus
Query: 6 aacttccgcgccggaagtgggcgggccagtggcccggcctgggggaagggagtgagggcc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73314052 aacttccgcgccggaagtgggcgggccagtggcccggcctgggggaagggagtgagggcc 73313993
Query: 66 gaggctaccgtggtgggtcccccgccaagctggttaaggggagtgagaaggcccggagac 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73313992 gaggctaccgtggtgggtcccccgccaagctggttaaggggagtgagaaggcccggagac 73313933
Query: 126 taactcgacgagaaaccccgcgccccgggaaaaagaaacccggctacacccgcaggccgc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73313932 taactcgacgagaaaccccgcgccccgggaaaaagaaacccggctacacccgcaggccgc 73313873
Query: 186 cggcgctctgtgaagatggcggggcctgagctactgctcgactccaacatccgcctctgg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73313872 cggcgctctgtgaagatggcggggcctgagctactgctcgactccaacatccgcctctgg 73313813
Query: 246 gtggtcctgccaatcgttattatcaccttcttcgtgggcatgatccgtcactacgtgtcc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73313812 gtggtcctgccaatcgttattatcaccttcttcgtgggcatgatccgtcactacgtgtcc 73313753
Query: 306 atcctgctgcagagcgacaagaagctcacccaggaacaagtctctgacag 355
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73313752 atcctgctgcagagcgacaagaagctcacccaggaacaagtctctgacag 73313703
Score = 367 bits (185), Expect = 9e-99
Identities = 234/244 (95%), Gaps = 5/244 (2%)
Strand = Plus / Minus
Query: 856 agacagagtgggaagctttggagctgacagatcaccagtgggcactagatgatgtcgaag 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73294480 agacagagtgggaagctttggagctgacagatcaccagtgggcactagatgatgtcgaag 73294421
Query: 916 aaggagctcatggccaaagacctccacttcgaaggcatgttcaaaaaggaactacagacc 975
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73294420 a-ggagctcatggccaaagacctccacttcgaaggcatgttcaaaaaggaactacagacc 73294362
Query: 976 tctattttctgaagacc-agcaggggttagctgtgtcaaggactcagagtagcac-taac 1033
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 73294361 tctattttctgaagaccaagcaggggttagctgtgtcagggactcagagtagcacttaac 73294302
Query: 1034 tttgtaacttttgtttgag-cagaagccctcagaataaaaa-gtggatgcatganctggc 1091
||||||| ||||||||||| |||| ||||||||||||||| |||||||||||| |||||
Sbjct: 73294301 tttgtaagttttgtttgagccagagcccctcagaataaaaaggtggatgcatgagctggc 73294242
Query: 1092 gggc 1095
||||
Sbjct: 73294241 gggc 73294238
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 507 gatcccactatgctcacagacatgatgaaaggcaatgtaacaaatgtcctccctatgatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73303216 gatcccactatgctcacagacatgatgaaaggcaatgtaacaaatgtcctccctatgatt 73303157
Query: 567 cttattggcggatggatcaacatgacgttttcaggctttgtcacaa 612
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73303156 cttattggcggatggatcaacatgacgttttcaggctttgtcacaa 73303111
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 774 gctgctgaccaatcacggatgatgcaggagcagatgactggagcagctgtggccatgccc 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73300664 gctgctgaccaatcacggatgatgcaggagcagatgactggagcagctgtggccatgccc 73300605
Query: 834 gcagataccaacaaagcctttaag 857
||||||||||||||||||||||||
Sbjct: 73300604 gcagataccaacaaagcctttaag 73300581
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 613 ccaaggtcccatttccactgaccctccgttttaagcctatgctacagcaaggaattgagc 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73302417 ccaaggtcccatttccactgaccctccgttttaagcctatgctacagcaaggaattgagc 73302358
Query: 673 tactcacattagatgcatcctgg 695
|||||||||||||||||||||||
Sbjct: 73302357 tactcacattagatgcatcctgg 73302335
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 694 gggtgagttctgcatcctggtatttcctcaatgtctttgggcttcggagcatttactccc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73301513 gggtgagttctgcatcctggtatttcctcaatgtctttgggcttcggagcatttactccc 73301454
Query: 754 tgattttgggccaagataatg 774
|||||||||||||||||||||
Sbjct: 73301453 tgattttgggccaagataatg 73301433
Score = 149 bits (75), Expect = 4e-33
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 412 agtcattcttgacacgaaaatactacttcaacaacccagaagatggatttttcnnnnnnn 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73306139 agtcattcttgacacgaaaatactacttcaacaacccagaagatggatttttcaaaaaaa 73306080
Query: 472 ctaaaaggaaggttgtgccaccttctcctatgactg 507
||||||||||||||||||||||||||||||||||||
Sbjct: 73306079 ctaaaaggaaggttgtgccaccttctcctatgactg 73306044
Score = 121 bits (61), Expect = 9e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 353 cagtcaagtcctaattcgaagcagagtcctcagggaaaatggaaaatacattcccaaaca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73306526 cagtcaagtcctaattcgaagcagagtcctcagggaaaatggaaaatacattcccaaaca 73306467
Query: 413 g 413
|
Sbjct: 73306466 g 73306466
>Sscrofa_Chr06
|| Length = 157765593
Score = 95.6 bits (48), Expect = 5e-17
Identities = 123/145 (84%), Gaps = 6/145 (4%)
Strand = Plus / Plus
Query: 322 acaagaagctcacccaggaacaagtctctga--cagtcaagtcctaattcgaagcagagt 379
||||||||||||||||||| ||| | ||||| | ||||||||||||||| ||||| |||
Sbjct: 16489051 acaagaagctcacccaggagcaaatatctgagtcggtcaagtcctaattcaaagcacagt 16489110
Query: 380 cctcagggaaaatggaaaatacattcccaaacagtcattcttgacacgaaaatactactt 439
||||| ||||||| |||| | | |||||||||||| ||||||| | ||||| |||||
Sbjct: 16489111 cctcaaggaaaatagaaattgtactcccaaacagtc---cttgacatg-aaatattactt 16489166
Query: 440 caacaacccagaagatggatttttc 464
||||||||||| ||||||||||||
Sbjct: 16489167 taacaacccagaggatggatttttc 16489191
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,944,940
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 9
Length of query: 1123
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1102
Effective length of database: 2,808,413,156
Effective search space: 3094871297912
Effective search space used: 3094871297912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)