Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013147
(1079 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075007.1| integral membrane protein 2C [Bos taurus]. 429 e-120
Alignment gi|NP_001030265.1| integral membrane protein 2B [Bos taurus]. 186 3e-47
>ref|NP_001075007.1| integral membrane protein 2C [Bos taurus].
Length = 271
Score = 429 bits (1104), Expect = e-120
Identities = 219/271 (80%), Positives = 221/271 (81%), Gaps = 2/271 (0%)
Frame = +1
Query: 214 MVKISFQPAVAGIKGXXXXXXXXXXXXXXXXXXX--EILLTPAREERPPHHRYKKGSSVG 387
MVKISFQPAVAGIKG EILLTPAREERPP+ RYKKG SVG
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASASASAPAPTPAAEILLTPAREERPPYQRYKKGGSVG 60
Query: 388 GVCYLSXXXXXXXXXXXFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEE 567
GVCYLS FASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQA TRMELEE
Sbjct: 61 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQAHTRMELEE 120
Query: 568 DVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPP 747
DVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPP
Sbjct: 121 DVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPP 180
Query: 748 RNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXX 927
RNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLC+GKDTY
Sbjct: 181 RNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLRRRATR 240
Query: 928 XXXXXXGAKNCNAIRHFENTFVVETLICGVV 1020
AKNCNAIRHFENTFVVETLICGVV
Sbjct: 241 RRINKREAKNCNAIRHFENTFVVETLICGVV 271
>ref|NP_001030265.1| integral membrane protein 2B [Bos taurus].
Length = 266
Score = 186 bits (472), Expect = 3e-47
Identities = 91/195 (46%), Positives = 125/195 (64%), Gaps = 8/195 (4%)
Frame = +1
Query: 451 YIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTRMELEEDVKIYLEENYERI 606
Y+Y+YF D+ ++CG+ Y E S + A +EE++KI+ E+ E I
Sbjct: 74 YLYKYFAFQP---DDVYYCGIKYIKDDVILNEPSADAPASRYQTIEENIKIFEEDEVEFI 130
Query: 607 NVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRG 786
+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PP+N ELL+N+K G
Sbjct: 131 SVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPKNLLELLINIKAG 190
Query: 787 TYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXXXXXXGAKNCNA 966
TYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY A C
Sbjct: 191 TYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRRETIKGIQKRSADVCVT 250
Query: 967 IRHFENTFVVETLIC 1011
IRHFEN F VETLIC
Sbjct: 251 IRHFENRFAVETLIC 265
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,233,803
Number of extensions: 468362
Number of successful extensions: 1945
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1942
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013147
(1079 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543282.2| PREDICTED: similar to Integral membrane protein... 429 e-120
Alignment gi|XP_861283.1| PREDICTED: similar to integral membrane protein... 346 3e-95
Alignment gi|XP_861254.1| PREDICTED: similar to integral membrane protein... 333 1e-91
Alignment gi|XP_534119.2| PREDICTED: similar to integral membrane protein... 190 2e-48
>ref|XP_543282.2| PREDICTED: similar to Integral membrane protein 2C (Transmembrane
protein BRI3) (Cerebral protein-14) isoform 2 [Canis
familiaris].
Length = 267
Score = 429 bits (1102), Expect = e-120
Identities = 219/269 (81%), Positives = 221/269 (82%)
Frame = +1
Query: 214 MVKISFQPAVAGIKGXXXXXXXXXXXXXXXXXXXEILLTPAREERPPHHRYKKGSSVGGV 393
MVKISFQPAVAGIKG EILLTPAREER P RYKKG SVGGV
Sbjct: 1 MVKISFQPAVAGIKGDKADKAAAAAAAPAPAA--EILLTPAREERAPPQRYKKGGSVGGV 58
Query: 394 CYLSXXXXXXXXXXXFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 573
CYLS FASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV
Sbjct: 59 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 118
Query: 574 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 753
KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN
Sbjct: 119 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 178
Query: 754 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXX 933
FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLC+GKDTY
Sbjct: 179 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLRRRATRRR 238
Query: 934 XXXXGAKNCNAIRHFENTFVVETLICGVV 1020
GAK+CNAIRHFENTFVVETLICGVV
Sbjct: 239 INKRGAKSCNAIRHFENTFVVETLICGVV 267
>ref|XP_861283.1| PREDICTED: similar to integral membrane protein 2C isoform 3 isoform
4 [Canis familiaris].
Length = 220
Score = 346 bits (887), Expect = 3e-95
Identities = 187/269 (69%), Positives = 189/269 (70%)
Frame = +1
Query: 214 MVKISFQPAVAGIKGXXXXXXXXXXXXXXXXXXXEILLTPAREERPPHHRYKKGSSVGGV 393
MVKISFQPAVAGIKG EILLTPAR
Sbjct: 1 MVKISFQPAVAGIKGDKADKAAAAAAAPAPAA--EILLTPAR------------------ 40
Query: 394 CYLSXXXXXXXXXXXFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 573
LARDNFFHCGVLYEDSLSSQARTRMELEEDV
Sbjct: 41 -----------------------------LARDNFFHCGVLYEDSLSSQARTRMELEEDV 71
Query: 574 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 753
KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN
Sbjct: 72 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 131
Query: 754 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXX 933
FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLC+GKDTY
Sbjct: 132 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLRRRATRRR 191
Query: 934 XXXXGAKNCNAIRHFENTFVVETLICGVV 1020
GAK+CNAIRHFENTFVVETLICGVV
Sbjct: 192 INKRGAKSCNAIRHFENTFVVETLICGVV 220
>ref|XP_861254.1| PREDICTED: similar to integral membrane protein 2C isoform 2 isoform
3 [Canis familiaris].
Length = 230
Score = 333 bits (855), Expect = 1e-91
Identities = 182/269 (67%), Positives = 184/269 (68%)
Frame = +1
Query: 214 MVKISFQPAVAGIKGXXXXXXXXXXXXXXXXXXXEILLTPAREERPPHHRYKKGSSVGGV 393
MVKISFQPAVAGIKG EILLTPAREER P RYKKG SVGGV
Sbjct: 1 MVKISFQPAVAGIKGDKADKAAAAAAAPAPAA--EILLTPAREERAPPQRYKKGGSVGGV 58
Query: 394 CYLSXXXXXXXXXXXFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 573
CYLS FASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV
Sbjct: 59 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 118
Query: 574 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 753
KIYLEENYERINVPVPQFGGGDPADIIHDFQR
Sbjct: 119 KIYLEENYERINVPVPQFGGGDPADIIHDFQR---------------------------- 150
Query: 754 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXX 933
RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLC+GKDTY
Sbjct: 151 ---------RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLRRRATRRR 201
Query: 934 XXXXGAKNCNAIRHFENTFVVETLICGVV 1020
GAK+CNAIRHFENTFVVETLICGVV
Sbjct: 202 INKRGAKSCNAIRHFENTFVVETLICGVV 230
>ref|XP_534119.2| PREDICTED: similar to integral membrane protein 2B [Canis
familiaris].
Length = 258
Score = 190 bits (483), Expect = 2e-48
Identities = 93/195 (47%), Positives = 126/195 (64%), Gaps = 8/195 (4%)
Frame = +1
Query: 451 YIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTRMELEEDVKIYLEENYERI 606
Y+Y+YF L D+ ++CG+ Y E S + A +EE++KI+ E+ E I
Sbjct: 66 YLYKYFALQP---DDVYYCGIKYIKDDVLLNEPSADAPAARYQTIEENIKIFEEDEVEFI 122
Query: 607 NVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRG 786
+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K G
Sbjct: 123 SVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAG 182
Query: 787 TYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXXXXXXGAKNCNA 966
TYLPQ+Y+I E MV+T+ + + + LG FIY LC+ K+TY NC
Sbjct: 183 TYLPQSYLIHEHMVITDRIENIDHLGFFIYRLCHDKETYKLQRRETIRGIQKREVSNCVT 242
Query: 967 IRHFENTFVVETLIC 1011
IRHFEN F VET+IC
Sbjct: 243 IRHFENKFAVETVIC 257
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,416,029
Number of extensions: 481934
Number of successful extensions: 2052
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2047
Number of HSP's successfully gapped: 5
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013147
(1079 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116603.1| integral membrane protein 2C [Sus scrofa]. 448 e-126
Alignment gi|NP_001035834.1| integral membrane protein 2B [Sus scrofa]. 191 8e-49
Alignment gi|NP_001026968.1| integral membrane protein 2A [Sus scrofa]. 140 1e-33
>ref|NP_001116603.1| integral membrane protein 2C [Sus scrofa].
Length = 269
Score = 448 bits (1153), Expect = e-126
Identities = 225/269 (83%), Positives = 225/269 (83%)
Frame = +1
Query: 214 MVKISFQPAVAGIKGXXXXXXXXXXXXXXXXXXXEILLTPAREERPPHHRYKKGSSVGGV 393
MVKISFQPAVAGIKG EILLTPAREERPPHHRYKKGSSVGGV
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASASAPAPAPAAEILLTPAREERPPHHRYKKGSSVGGV 60
Query: 394 CYLSXXXXXXXXXXXFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 573
CYLS FASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV
Sbjct: 61 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 120
Query: 574 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 753
KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN
Sbjct: 121 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 180
Query: 754 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXX 933
FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY
Sbjct: 181 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRR 240
Query: 934 XXXXGAKNCNAIRHFENTFVVETLICGVV 1020
GAKNCNAIRHFENTFVVETLICGVV
Sbjct: 241 INKRGAKNCNAIRHFENTFVVETLICGVV 269
>ref|NP_001035834.1| integral membrane protein 2B [Sus scrofa].
Length = 266
Score = 191 bits (484), Expect = 8e-49
Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 8/195 (4%)
Frame = +1
Query: 451 YIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTRMELEEDVKIYLEENYERI 606
Y+Y+YF L D+ ++CG+ Y E ++ A +EE++KI+ E+ E I
Sbjct: 74 YLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFI 130
Query: 607 NVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRG 786
+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K G
Sbjct: 131 SVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAG 190
Query: 787 TYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXXXXXXGAKNCNA 966
TYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY A NC
Sbjct: 191 TYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGIQKREASNCAT 250
Query: 967 IRHFENTFVVETLIC 1011
IRHFEN F VETLIC
Sbjct: 251 IRHFENKFAVETLIC 265
>ref|NP_001026968.1| integral membrane protein 2A [Sus scrofa].
Length = 254
Score = 140 bits (353), Expect = 1e-33
Identities = 72/192 (37%), Positives = 104/192 (54%), Gaps = 6/192 (3%)
Frame = +1
Query: 454 IYRYFFLAQLARDNFFHCGVLYEDSLSSQARTR------MELEEDVKIYLEENYERINVP 615
IY+YF + + +H + + DS + + + E+ I ++N I+VP
Sbjct: 65 IYKYF----MPKSTIYHGEMCFFDSADPANSLQGGEPYFLPVMEEADIREDDNIAIIDVP 120
Query: 616 VPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYL 795
VP F DPA IIHDF++G+TAY D+ L CY++ LNT+IV+PP+ EL + RG YL
Sbjct: 121 VPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMPPKYLLELFGKLARGKYL 180
Query: 796 PQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXXXXXXGAKNCNAIRH 975
P TY++ E++V E + D LG FIY LCN + ++ C IRH
Sbjct: 181 PHTYVVHEDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRRDLLLGFNKRAIDKCWKIRH 240
Query: 976 FENTFVVETLIC 1011
F N F+VET IC
Sbjct: 241 FPNEFIVETKIC 252
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,820,336
Number of extensions: 321560
Number of successful extensions: 1279
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1274
Number of HSP's successfully gapped: 3
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013147
(1079 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071862.2| integral membrane protein 2C [Mus musculus]. 430 e-121
Alignment gi|NP_032436.1| integral membrane protein 2B [Mus musculus]. 191 1e-48
Alignment gi|NP_032435.2| integral membrane protein 2A [Mus musculus]. 137 1e-32
>ref|NP_071862.2| integral membrane protein 2C [Mus musculus].
Length = 269
Score = 430 bits (1106), Expect = e-121
Identities = 216/269 (80%), Positives = 218/269 (81%)
Frame = +1
Query: 214 MVKISFQPAVAGIKGXXXXXXXXXXXXXXXXXXXEILLTPAREERPPHHRYKKGSSVGGV 393
MVKISFQPAVAGIK EILLTPAREERPP HR +KG SVGGV
Sbjct: 1 MVKISFQPAVAGIKADKADKAAASGPASASAPAAEILLTPAREERPPRHRSRKGGSVGGV 60
Query: 394 CYLSXXXXXXXXXXXFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 573
CYLS FASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQ RTR+ELEEDV
Sbjct: 61 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQIRTRLELEEDV 120
Query: 574 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 753
KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN
Sbjct: 121 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 180
Query: 754 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXX 933
FWELLMNVKRGTYLPQTYIIQEEMVVTEHV DKEALGSFIYHLCNGKDTY
Sbjct: 181 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVRDKEALGSFIYHLCNGKDTYRLRRRSTRRR 240
Query: 934 XXXXGAKNCNAIRHFENTFVVETLICGVV 1020
G KNCNAIRHFENTFVVETLICGVV
Sbjct: 241 INKRGGKNCNAIRHFENTFVVETLICGVV 269
>ref|NP_032436.1| integral membrane protein 2B [Mus musculus].
Length = 266
Score = 191 bits (484), Expect = 1e-48
Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 8/195 (4%)
Frame = +1
Query: 451 YIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTRMELEEDVKIYLEENYERI 606
Y+Y+YF L D+ ++CG+ Y E S + A +EE++KI+ E+ E I
Sbjct: 74 YLYKYFALQP---DDVYYCGLKYIKDDVILNEPSADAPAARYQTIEENIKIFEEDAVEFI 130
Query: 607 NVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRG 786
+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PP+N ELL+N+K G
Sbjct: 131 SVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPKNLLELLINIKAG 190
Query: 787 TYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXXXXXXGAKNCNA 966
TYLPQ+Y+I E MV+T+ + + + LG FIY LC+ K+TY A NC
Sbjct: 191 TYLPQSYLIHEHMVITDRIENVDNLGFFIYRLCHDKETYKLQRRETIRGIQKREASNCFT 250
Query: 967 IRHFENTFVVETLIC 1011
IRHFEN F VETLIC
Sbjct: 251 IRHFENKFAVETLIC 265
>ref|NP_032435.2| integral membrane protein 2A [Mus musculus].
Length = 263
Score = 137 bits (345), Expect = 1e-32
Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 6/192 (3%)
Frame = +1
Query: 454 IYRYFFLAQLARDNFFHCGVLYEDS------LSSQARTRMELEEDVKIYLEENYERINVP 615
IY+YF + + +H + + DS + + + E+ I ++N I+VP
Sbjct: 74 IYKYF----MPKSTIYHGEMCFFDSEDPVNSIPGGEPYFLPVTEEADIREDDNIAIIDVP 129
Query: 616 VPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYL 795
VP F DPA IIHDF++G+TAY D+ L CY++ LNT+IV+ P+N EL + G YL
Sbjct: 130 VPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMTPKNLVELFGKLASGKYL 189
Query: 796 PQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXXXXXXGAKNCNAIRH 975
P TY+++E++V E + D LG FIY LCN + ++ C IRH
Sbjct: 190 PHTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRRDLLLGFNKRAIDKCWKIRH 249
Query: 976 FENTFVVETLIC 1011
F N F+VET IC
Sbjct: 250 FPNEFIVETKIC 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,674,863
Number of extensions: 378096
Number of successful extensions: 1446
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1443
Number of HSP's successfully gapped: 3
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013147
(1079 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sa... 426 e-119
Alignment gi|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo... 342 3e-94
Alignment gi|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo... 331 8e-91
Alignment gi|NP_068839.1| integral membrane protein 2B [Homo sapiens]. 196 4e-50
Alignment gi|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sa... 141 1e-33
Alignment gi|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo... 140 2e-33
>ref|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sapiens].
Length = 267
Score = 426 bits (1095), Expect = e-119
Identities = 216/269 (80%), Positives = 220/269 (81%)
Frame = +1
Query: 214 MVKISFQPAVAGIKGXXXXXXXXXXXXXXXXXXXEILLTPAREERPPHHRYKKGSSVGGV 393
MVKISFQPAVAGIKG EILLTPAREE+PP HR K+G SVGGV
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASAT--EILLTPAREEQPPQHRSKRGGSVGGV 58
Query: 394 CYLSXXXXXXXXXXXFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 573
CYLS FASVYIYRYFFLAQLARDNFF CGVLYEDSLSSQ RT+MELEEDV
Sbjct: 59 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDV 118
Query: 574 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 753
KIYL+ENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN
Sbjct: 119 KIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 178
Query: 754 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXX 933
FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY
Sbjct: 179 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRR 238
Query: 934 XXXXGAKNCNAIRHFENTFVVETLICGVV 1020
GAKNCNAIRHFENTFVVETLICGVV
Sbjct: 239 INKRGAKNCNAIRHFENTFVVETLICGVV 267
>ref|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo sapiens].
Length = 220
Score = 342 bits (878), Expect = 3e-94
Identities = 185/269 (68%), Positives = 187/269 (69%)
Frame = +1
Query: 214 MVKISFQPAVAGIKGXXXXXXXXXXXXXXXXXXXEILLTPAREERPPHHRYKKGSSVGGV 393
MVKISFQPAVAGIKG EILLTPAR
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASAT--EILLTPAR------------------ 40
Query: 394 CYLSXXXXXXXXXXXFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 573
LARDNFF CGVLYEDSLSSQ RT+MELEEDV
Sbjct: 41 -----------------------------LARDNFFRCGVLYEDSLSSQVRTQMELEEDV 71
Query: 574 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 753
KIYL+ENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN
Sbjct: 72 KIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 131
Query: 754 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXX 933
FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY
Sbjct: 132 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRR 191
Query: 934 XXXXGAKNCNAIRHFENTFVVETLICGVV 1020
GAKNCNAIRHFENTFVVETLICGVV
Sbjct: 192 INKRGAKNCNAIRHFENTFVVETLICGVV 220
>ref|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo sapiens].
Length = 230
Score = 331 bits (848), Expect = 8e-91
Identities = 179/269 (66%), Positives = 183/269 (68%)
Frame = +1
Query: 214 MVKISFQPAVAGIKGXXXXXXXXXXXXXXXXXXXEILLTPAREERPPHHRYKKGSSVGGV 393
MVKISFQPAVAGIKG EILLTPAREE+PP HR K+G SVGGV
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASAT--EILLTPAREEQPPQHRSKRGGSVGGV 58
Query: 394 CYLSXXXXXXXXXXXFASVYIYRYFFLAQLARDNFFHCGVLYEDSLSSQARTRMELEEDV 573
CYLS FASVYIYRYFFLAQLARDNFF CGVLYEDSLSSQ RT+MELEEDV
Sbjct: 59 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLYEDSLSSQVRTQMELEEDV 118
Query: 574 KIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRN 753
KIYL+ENYERINVPVPQFGGGDPADIIHDFQR
Sbjct: 119 KIYLDENYERINVPVPQFGGGDPADIIHDFQR---------------------------- 150
Query: 754 FWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXX 933
RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY
Sbjct: 151 ---------RGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRR 201
Query: 934 XXXXGAKNCNAIRHFENTFVVETLICGVV 1020
GAKNCNAIRHFENTFVVETLICGVV
Sbjct: 202 INKRGAKNCNAIRHFENTFVVETLICGVV 230
>ref|NP_068839.1| integral membrane protein 2B [Homo sapiens].
Length = 266
Score = 196 bits (497), Expect = 4e-50
Identities = 97/195 (49%), Positives = 128/195 (65%), Gaps = 8/195 (4%)
Frame = +1
Query: 451 YIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTRMELEEDVKIYLEENYERI 606
Y+Y+YF L D+ ++CG+ Y E S + A +EE++KI+ EE E I
Sbjct: 74 YLYKYFALQP---DDVYYCGIKYIKDDVILNEPSADAPAALYQTIEENIKIFEEEEVEFI 130
Query: 607 NVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRG 786
+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K G
Sbjct: 131 SVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAG 190
Query: 787 TYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXXXXXXGAKNCNA 966
TYLPQ+Y+I E MV+T+ + + + LG FIY LC+ K+TY A NC A
Sbjct: 191 TYLPQSYLIHEHMVITDRIENIDHLGFFIYRLCHDKETYKLQRRETIKGIQKREASNCFA 250
Query: 967 IRHFENTFVVETLIC 1011
IRHFEN F VETLIC
Sbjct: 251 IRHFENKFAVETLIC 265
>ref|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sapiens].
Length = 263
Score = 141 bits (355), Expect = 1e-33
Identities = 73/192 (38%), Positives = 105/192 (54%), Gaps = 6/192 (3%)
Frame = +1
Query: 454 IYRYFFLAQLARDNFFHCGVLYEDSLSSQARTR------MELEEDVKIYLEENYERINVP 615
IY+YF + + + + + DS R + + E+ I ++N I+VP
Sbjct: 74 IYKYF----MPKSTIYRGEMCFFDSEDPANSLRGGEPNFLPVTEEADIREDDNIAIIDVP 129
Query: 616 VPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYL 795
VP F DPA IIHDF++G+TAY D+ L CY++ LNT+IV+PP+N EL + G YL
Sbjct: 130 VPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMPPKNLVELFGKLASGRYL 189
Query: 796 PQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXXXXXXXXXXXXXGAKNCNAIRH 975
PQTY+++E++V E + D LG FIY LCN + ++ C IRH
Sbjct: 190 PQTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRRDLLLGFNKRAIDKCWKIRH 249
Query: 976 FENTFVVETLIC 1011
F N F+VET IC
Sbjct: 250 FPNEFIVETKIC 261
>ref|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo sapiens].
Length = 219
Score = 140 bits (354), Expect = 2e-33
Identities = 66/153 (43%), Positives = 92/153 (60%)
Frame = +1
Query: 553 MELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTT 732
+ + E+ I ++N I+VPVP F DPA IIHDF++G+TAY D+ L CY++ LNT+
Sbjct: 65 LPVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTS 124
Query: 733 IVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYXXX 912
IV+PP+N EL + G YLPQTY+++E++V E + D LG FIY LCN + ++
Sbjct: 125 IVMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLR 184
Query: 913 XXXXXXXXXXXGAKNCNAIRHFENTFVVETLIC 1011
C IRHF N F+VET IC
Sbjct: 185 RRDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 217
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,664,683
Number of extensions: 459772
Number of successful extensions: 1846
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1840
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013147
(1079 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 422 e-115
>Sscrofa_Chr15
|| Length = 157681621
Score = 422 bits (213), Expect = e-115
Identities = 213/213 (100%)
Strand = Plus / Plus
Query: 77 ttagagaaaaggacgcgaacgggatccaaacttccggtgcctgcggagcccggagcggcg 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145293318 ttagagaaaaggacgcgaacgggatccaaacttccggtgcctgcggagcccggagcggcg 145293377
Query: 137 gtgctacagatccaggctgcgccggtggtggctgcacgggcagaggctgcagggcggacg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145293378 gtgctacagatccaggctgcgccggtggtggctgcacgggcagaggctgcagggcggacg 145293437
Query: 197 cacggccgggcgcagccatggtgaagatcagcttccagccggcggtggccggcatcaagg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145293438 cacggccgggcgcagccatggtgaagatcagcttccagccggcggtggccggcatcaagg 145293497
Query: 257 gcgacaaggccgacaaggcttcggcctcggcct 289
|||||||||||||||||||||||||||||||||
Sbjct: 145293498 gcgacaaggccgacaaggcttcggcctcggcct 145293530
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 475 gctcagctggcccgcgacaacttcttccactgcggcgtcctctacgaggactccctgtcc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145303574 gctcagctggcccgcgacaacttcttccactgcggcgtcctctacgaggactccctgtcc 145303633
Query: 535 tcccaggcccgcacgcgcatggagctggaggaggacgtgaagatctacctggaggagaac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145303634 tcccaggcccgcacgcgcatggagctggaggaggacgtgaagatctacctggaggagaac 145303693
Query: 595 tacgagcgcatcaacgtgcccgtgccccagttcggcggcggcgaccctgccgacatcatc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145303694 tacgagcgcatcaacgtgcccgtgccccagttcggcggcggcgaccctgccgacatcatc 145303753
Query: 655 cacgacttccagcggg 670
||||||||||||||||
Sbjct: 145303754 cacgacttccagcggg 145303769
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 779 agagggggacctacctcccgcagacctacatcatccaggaggagatggtggtcacggagc 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145305002 agagggggacctacctcccgcagacctacatcatccaggaggagatggtggtcacggagc 145305061
Query: 839 acgtcagcgacaaggaggccctgggctccttcatctaccacctgtgcaacgggaaggaca 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145305062 acgtcagcgacaaggaggccctgggctccttcatctaccacctgtgcaacgggaaggaca 145305121
Query: 899 cctaccggctgcggcgcagggccacccggagacg 932
||||||||||||||||||||||||||||||||||
Sbjct: 145305122 cctaccggctgcggcgcagggccacccggagacg 145305155
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 356 accaccgctacaagaaggggagctctgtgggcggcgtgtgctacctgtcgatgggcatgg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145301287 accaccgctacaagaaggggagctctgtgggcggcgtgtgctacctgtcgatgggcatgg 145301346
Query: 416 tcgtgctgcttatgggcctcgtgttcgcctccgtctacatctacagatacttcttcctcg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145301347 tcgtgctgcttatgggcctcgtgttcgcctccgtctacatctacagatacttcttcctcg 145301406
Query: 476 ctcag 480
|||||
Sbjct: 145301407 ctcag 145301411
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 669 gggtctcaccgcctatcatgacatctccttggacaagtgctatgtcatcgagcttaacac 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145304356 gggtctcaccgcctatcatgacatctccttggacaagtgctatgtcatcgagcttaacac 145304415
Query: 729 caccatcgtgctgccccctcgcaacttctgggagctccttatgaacgtgaag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145304416 caccatcgtgctgccccctcgcaacttctgggagctccttatgaacgtgaag 145304467
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 932 ggatcaacaaacgaggggccaagaactgcaacgccatccgccacttcgagaacaccttcg 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145305908 ggatcaacaaacgaggggccaagaactgcaacgccatccgccacttcgagaacaccttcg 145305967
Query: 992 tggtggagacgctcatctgcggggtggtgtgaa 1024
|||||||||||||||||||||||||||||||||
Sbjct: 145305968 tggtggagacgctcatctgcggggtggtgtgaa 145306000
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,795,858
Number of extensions: 86
Number of successful extensions: 86
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 6
Length of query: 1079
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1058
Effective length of database: 2,808,413,156
Effective search space: 2971301119048
Effective search space used: 2971301119048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)