Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013148
(1220 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534612.2| PREDICTED: similar to COP9 signalosome complex ... 413 e-115
>ref|XP_534612.2| PREDICTED: similar to COP9 signalosome complex subunit 8
(Signalosome subunit 8) (SGN8) (JAB1-containing
signalosome subunit 8) (COP9 homolog) (hCOP9) [Canis
familiaris].
Length = 209
Score = 413 bits (1061), Expect = e-115
Identities = 201/209 (96%), Positives = 207/209 (99%)
Frame = +2
Query: 89 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 268
MPVAVMAE AF+FKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
Sbjct: 1 MPVAVMAEGAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 60
Query: 269 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 448
PPAIKSANSELGGIWSVGQRIWQRDFPG+Y+TINAHQWSETVQPIMEALRDATRRRAFAL
Sbjct: 61 PPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFAL 120
Query: 449 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 628
VSQAYTSI+ADDFAAFVGLPVEEAVKG+LEQGWQADS+TRMVMPKKPVAGALDVSFNRFI
Sbjct: 121 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVMPKKPVAGALDVSFNRFI 180
Query: 629 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
PLSE APVPPIPNEQQLARLTDYVAFLEN
Sbjct: 181 PLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,749,424
Number of extensions: 1148801
Number of successful extensions: 5101
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4940
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 301
Effective length of database: 15,374,224
Effective search space: 4627641424
Effective search space used: 4627641424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013148
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013148
(1220 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076966.1| COP9 signalosome complex subunit 8 [Bos taur... 413 e-115
Alignment gi|XP_002687903.1| PREDICTED: COP9 signalosome subunit 8-like [... 397 e-111
Alignment gi|XP_002687876.1| PREDICTED: COP9 signalosome subunit 8-like [... 397 e-111
Alignment gi|XP_592083.1| PREDICTED: COP9 signalosome subunit 8 isoform 1... 397 e-111
>ref|NP_001076966.1| COP9 signalosome complex subunit 8 [Bos taurus].
Length = 209
Score = 413 bits (1061), Expect = e-115
Identities = 202/209 (96%), Positives = 207/209 (99%)
Frame = +2
Query: 89 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 268
MPVAVMAES+F+FKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
Sbjct: 1 MPVAVMAESSFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 60
Query: 269 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 448
PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSE VQPIMEALRDATRRRAFAL
Sbjct: 61 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSEAVQPIMEALRDATRRRAFAL 120
Query: 449 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 628
VSQAYTSI+ADDFAAFVGLPVEEAVKG+LEQGWQADS+TRMVMPKKPVAGALDVSFNRFI
Sbjct: 121 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVMPKKPVAGALDVSFNRFI 180
Query: 629 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
PLSE APVPPIPNEQQLARLTDYVAFLEN
Sbjct: 181 PLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
>ref|XP_002687903.1| PREDICTED: COP9 signalosome subunit 8-like [Bos taurus].
Length = 209
Score = 397 bits (1021), Expect = e-111
Identities = 194/209 (92%), Positives = 202/209 (96%)
Frame = +2
Query: 89 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 268
MPVAVMAES+F+FKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
Sbjct: 1 MPVAVMAESSFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 60
Query: 269 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 448
PPAIKSANSELGGIWSVGQ+IWQRDFPGVYSTINAHQWSE VQPIMEALRDATRRRAFAL
Sbjct: 61 PPAIKSANSELGGIWSVGQQIWQRDFPGVYSTINAHQWSEAVQPIMEALRDATRRRAFAL 120
Query: 449 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 628
VSQAYTSI+ADDFAAFVGLPVEEAVKG+LEQGWQADS+ R+VMPKKPVAG LDVSFNRFI
Sbjct: 121 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTIRIVMPKKPVAGTLDVSFNRFI 180
Query: 629 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
LSE PVPPIP EQQLARLTDYVAFL+N
Sbjct: 181 SLSEPTPVPPIPKEQQLARLTDYVAFLKN 209
>ref|XP_002687876.1| PREDICTED: COP9 signalosome subunit 8-like [Bos taurus].
Length = 209
Score = 397 bits (1021), Expect = e-111
Identities = 194/209 (92%), Positives = 202/209 (96%)
Frame = +2
Query: 89 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 268
MPVAVMAES+F+FKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
Sbjct: 1 MPVAVMAESSFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 60
Query: 269 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 448
PPAIKSANSELGGIWSVGQ+IWQRDFPGVYSTINAHQWSE VQPIMEALRDATRRRAFAL
Sbjct: 61 PPAIKSANSELGGIWSVGQQIWQRDFPGVYSTINAHQWSEAVQPIMEALRDATRRRAFAL 120
Query: 449 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 628
VSQAYTSI+ADDFAAFVGLPVEEAVKG+LEQGWQADS+ R+VMPKKPVAG LDVSFNRFI
Sbjct: 121 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTIRIVMPKKPVAGTLDVSFNRFI 180
Query: 629 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
LSE PVPPIP EQQLARLTDYVAFL+N
Sbjct: 181 SLSEPTPVPPIPKEQQLARLTDYVAFLKN 209
>ref|XP_592083.1| PREDICTED: COP9 signalosome subunit 8 isoform 1 [Bos taurus].
Length = 209
Score = 397 bits (1021), Expect = e-111
Identities = 194/209 (92%), Positives = 202/209 (96%)
Frame = +2
Query: 89 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 268
MPVAVMAES+F+FKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
Sbjct: 1 MPVAVMAESSFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 60
Query: 269 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 448
PPAIKSANSELGGIWSVGQ+IWQRDFPGVYSTINAHQWSE VQPIMEALRDATRRRAFAL
Sbjct: 61 PPAIKSANSELGGIWSVGQQIWQRDFPGVYSTINAHQWSEAVQPIMEALRDATRRRAFAL 120
Query: 449 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 628
VSQAYTSI+ADDFAAFVGLPVEEAVKG+LEQGWQADS+ R+VMPKKPVAG LDVSFNRFI
Sbjct: 121 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTIRIVMPKKPVAGTLDVSFNRFI 180
Query: 629 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
LSE PVPPIP EQQLARLTDYVAFL+N
Sbjct: 181 SLSEPTPVPPIPKEQQLARLTDYVAFLKN 209
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,761,476
Number of extensions: 1112881
Number of successful extensions: 4409
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4298
Number of HSP's successfully gapped: 4
Length of query: 406
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,207,134
Effective search space: 4276347334
Effective search space used: 4276347334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013148
(1220 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133809.1| PREDICTED: COP9 signalosome complex subunit ... 422 e-118
Alignment gi|XP_003133810.1| PREDICTED: COP9 signalosome complex subunit ... 330 1e-90
>ref|XP_003133809.1| PREDICTED: COP9 signalosome complex subunit 8-like isoform 1 [Sus
scrofa].
Length = 209
Score = 422 bits (1084), Expect = e-118
Identities = 209/209 (100%), Positives = 209/209 (100%)
Frame = +2
Query: 89 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 268
MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
Sbjct: 1 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 60
Query: 269 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 448
PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL
Sbjct: 61 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 120
Query: 449 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 628
VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI
Sbjct: 121 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 180
Query: 629 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
PLSEAAPVPPIPNEQQLARLTDYVAFLEN
Sbjct: 181 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 209
>ref|XP_003133810.1| PREDICTED: COP9 signalosome complex subunit 8-like isoform 2 [Sus
scrofa].
Length = 172
Score = 330 bits (846), Expect = 1e-90
Identities = 172/209 (82%), Positives = 172/209 (82%)
Frame = +2
Query: 89 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 268
MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
Sbjct: 1 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 60
Query: 269 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 448
PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL
Sbjct: 61 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 120
Query: 449 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 628
VSQAYTSIVADDFAAFVGLPVEEAVK
Sbjct: 121 VSQAYTSIVADDFAAFVGLPVEEAVK---------------------------------- 146
Query: 629 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
EAAPVPPIPNEQQLARLTDYVAFLEN
Sbjct: 147 ---EAAPVPPIPNEQQLARLTDYVAFLEN 172
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,267,096
Number of extensions: 719164
Number of successful extensions: 3077
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3001
Number of HSP's successfully gapped: 3
Length of query: 406
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,829,335
Effective search space: 2692947175
Effective search space used: 2692947175
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013148
(1220 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598566.3| COP9 signalosome complex subunit 8 [Mus musculu... 399 e-111
>ref|NP_598566.3| COP9 signalosome complex subunit 8 [Mus musculus].
Length = 209
Score = 399 bits (1026), Expect = e-111
Identities = 193/209 (92%), Positives = 204/209 (97%)
Frame = +2
Query: 89 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 268
MPVAVMA++AF+F+KLLDQCENQELEAPGGIATPPVYGQLLALYLL NDMNNARYLWKRI
Sbjct: 1 MPVAVMADNAFSFRKLLDQCENQELEAPGGIATPPVYGQLLALYLLQNDMNNARYLWKRI 60
Query: 269 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 448
PPAIKSANSELGGIWSVGQRIWQRDFPG+Y+TINAHQWSETVQPIMEALRDATRRRAFAL
Sbjct: 61 PPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFAL 120
Query: 449 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 628
VSQAYTSI+ADDFAAFVGLPVEEAVKGVLEQGWQADS+TRMV+P+KP +G LDVS NRFI
Sbjct: 121 VSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPASGTLDVSLNRFI 180
Query: 629 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
PLSE APVPPIPNEQQLARLTDYVAFLEN
Sbjct: 181 PLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,691,673
Number of extensions: 931239
Number of successful extensions: 3638
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3483
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 302
Effective length of database: 12,493,815
Effective search space: 3773132130
Effective search space used: 3773132130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013148
(1220 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006701.1| COP9 signalosome complex subunit 8 isoform 1 [H... 411 e-115
Alignment gi|NP_937832.1| COP9 signalosome complex subunit 8 isoform 2 [H... 315 7e-86
>ref|NP_006701.1| COP9 signalosome complex subunit 8 isoform 1 [Homo sapiens].
Length = 209
Score = 411 bits (1056), Expect = e-115
Identities = 199/209 (95%), Positives = 208/209 (99%)
Frame = +2
Query: 89 MPVAVMAESAFNFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 268
MPVAVMAESAF+FKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
Sbjct: 1 MPVAVMAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 60
Query: 269 PPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEALRDATRRRAFAL 448
PPAIKSANSELGGIWSVGQRIWQRDFPG+Y+TINAHQWSETVQPIMEALRDATRRRAFAL
Sbjct: 61 PPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFAL 120
Query: 449 VSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVAGALDVSFNRFI 628
VSQAYTSI+ADDFAAFVGLPVEEAVKG+LEQGWQADS+TRMV+P+KPVAGALDVSFN+FI
Sbjct: 121 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFI 180
Query: 629 PLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
PLSE APVPPIPNEQQLARLTDYVAFLEN
Sbjct: 181 PLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
>ref|NP_937832.1| COP9 signalosome complex subunit 8 isoform 2 [Homo sapiens].
Length = 160
Score = 315 bits (806), Expect = 7e-86
Identities = 151/160 (94%), Positives = 159/160 (99%)
Frame = +2
Query: 236 MNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGVYSTINAHQWSETVQPIMEAL 415
MNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPG+Y+TINAHQWSETVQPIMEAL
Sbjct: 1 MNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEAL 60
Query: 416 RDATRRRAFALVSQAYTSIVADDFAAFVGLPVEEAVKGVLEQGWQADSSTRMVMPKKPVA 595
RDATRRRAFALVSQAYTSI+ADDFAAFVGLPVEEAVKG+LEQGWQADS+TRMV+P+KPVA
Sbjct: 61 RDATRRRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVA 120
Query: 596 GALDVSFNRFIPLSEAAPVPPIPNEQQLARLTDYVAFLEN 715
GALDVSFN+FIPLSE APVPPIPNEQQLARLTDYVAFLEN
Sbjct: 121 GALDVSFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 160
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,672,963
Number of extensions: 1119326
Number of successful extensions: 4409
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4281
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,835,944
Effective search space: 4465619144
Effective search space used: 4465619144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013148
(1220 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1142 0.0
Sscrofa_Chr06 143 3e-31
Sscrofa_Chr01 139 4e-30
>Sscrofa_Chr15
|| Length = 157681621
Score = 1142 bits (576), Expect = 0.0
Identities = 576/576 (100%)
Strand = Plus / Plus
Query: 636 cagaggctgcccccgtcccgcccatccccaacgagcagcagttagcccgactcaccgact 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151278499 cagaggctgcccccgtcccgcccatccccaacgagcagcagttagcccgactcaccgact 151278558
Query: 696 acgtggctttcctcgaaaactgactgactccgagctccagatccaccaccagaatcctgt 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151278559 acgtggctttcctcgaaaactgactgactccgagctccagatccaccaccagaatcctgt 151278618
Query: 756 atactgacaaatagagaaatgtaaggtttttatttgcaattttattggctggattgagca 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151278619 atactgacaaatagagaaatgtaaggtttttatttgcaattttattggctggattgagca 151278678
Query: 816 cctcagcgttccttactgagtatgtgataaaacacgtagagaagaatatatattttgtcc 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151278679 cctcagcgttccttactgagtatgtgataaaacacgtagagaagaatatatattttgtcc 151278738
Query: 876 ttcaacgttatgctgaatggtcgtggaaacaattcttattttgtgctagttgacgatttg 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151278739 ttcaacgttatgctgaatggtcgtggaaacaattcttattttgtgctagttgacgatttg 151278798
Query: 936 gacggagcccgtcagtgttagcagggagttagtgtttcctagtgactcatgaatgagctc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151278799 gacggagcccgtcagtgttagcagggagttagtgtttcctagtgactcatgaatgagctc 151278858
Query: 996 cctgctgcctgcggcgcagcggccgtcagctgcttcctccccggctcgaggcaccctgcg 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151278859 cctgctgcctgcggcgcagcggccgtcagctgcttcctccccggctcgaggcaccctgcg 151278918
Query: 1056 cctgcaccgcgggctggtggctgcactgatgcacggctgtccccaggggcctatctgact 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151278919 cctgcaccgcgggctggtggctgcactgatgcacggctgtccccaggggcctatctgact 151278978
Query: 1116 gtctggggaccctgactccccctcctcggggctgtgctcttccccctccctgctgagaat 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151278979 gtctggggaccctgactccccctcctcggggctgtgctcttccccctccctgctgagaat 151279038
Query: 1176 cagccatcaaaatgctgagctagagctaagaacaaa 1211
||||||||||||||||||||||||||||||||||||
Sbjct: 151279039 cagccatcaaaatgctgagctagagctaagaacaaa 151279074
Score = 331 bits (167), Expect = 5e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 1 ttttacgtcatcgcgggcgcgacgcccggagggacaagtctggggtccagctagaagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151269702 ttttacgtcatcgcgggcgcgacgcccggagggacaagtctggggtccagctagaagggg 151269761
Query: 61 aggtacggcggcgggaccggccgggaagatgccagtggcggtgatggcggaaagtgcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151269762 aggtacggcggcgggaccggccgggaagatgccagtggcggtgatggcggaaagtgcctt 151269821
Query: 121 taatttcaaaaagttgctggatcagtgcgagaaccaggagctggagg 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151269822 taatttcaaaaagttgctggatcagtgcgagaaccaggagctggagg 151269868
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 286 ggcaaattctgaacttggggggatttggtcagtgggacagagaatctggcagagggattt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151273004 ggcaaattctgaacttggggggatttggtcagtgggacagagaatctggcagagggattt 151273063
Query: 346 ccctggcgtctacagcaccatcaacgcccaccagtggtccgagacggtccagcccatcat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151273064 ccctggcgtctacagcaccatcaacgcccaccagtggtccgagacggtccagcccatcat 151273123
Query: 406 ggaagcacttagag 419
||||||||||||||
Sbjct: 151273124 ggaagcacttagag 151273137
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 418 agatgctacccggaggcgcgccttcgccctggtttctcaagcctacacctccatcgtcgc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151275207 agatgctacccggaggcgcgccttcgccctggtttctcaagcctacacctccatcgtcgc 151275266
Query: 478 cgacgacttcgcagccttcgtcggcctgcctgtggaggaagctgtgaaagg 528
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151275267 cgacgacttcgcagccttcgtcggcctgcctgtggaggaagctgtgaaagg 151275317
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 165 aggctccaggaggaattgctacacctccagtgtatggtcagcttctagctttatatctgc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151270848 aggctccaggaggaattgctacacctccagtgtatggtcagcttctagctttatatctgc 151270907
Query: 225 tccataatgacatg 238
||||||||||||||
Sbjct: 151270908 tccataatgacatg 151270921
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 526 aggggtgctggagcaggggtggcaggctgactcctccacgaggatggtgatgcccaagaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151276740 aggggtgctggagcaggggtggcaggctgactcctccacgaggatggtgatgcccaagaa 151276799
Query: 586 gccag 590
|||||
Sbjct: 151276800 gccag 151276804
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 238 gaataatgcaagatacctttggaaaagaataccacccgctataaagtcgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151272057 gaataatgcaagatacctttggaaaagaataccacccgctataaagtcgg 151272106
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 589 agttgcaggtgccctggatgtttcctttaacagatttattccgttgtcag 638
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151277752 agttgcaggtgccctggatgtttcctttaacagatttattccgttgtcag 151277801
>Sscrofa_Chr06
|| Length = 157765593
Score = 143 bits (72), Expect = 3e-31
Identities = 122/135 (90%), Gaps = 4/135 (2%)
Strand = Plus / Minus
Query: 83 gggaagatgccagtggcggtgatggcggaaagtgcctttaa-tttcaaaaagttgctgga 141
||||| ||| |||||| ||||||||| |||||||||||||| ||||||| |||||||||
Sbjct: 87933890 gggaaaatgacagtggaggtgatggcagaaagtgcctttaagtttcaaa--gttgctgga 87933833
Query: 142 tcagtgcgagaaccaggagctggaggctccaggaggaattgctacacctccagtgtatgg 201
|||||| || |||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct: 87933832 tcagtgtgaaaaccaggagctggaggctccaggaggaattgctacacc-ccagcgtatag 87933774
Query: 202 tcagcttctagcttt 216
|| ||||||||||||
Sbjct: 87933773 tctgcttctagcttt 87933759
Score = 141 bits (71), Expect = 1e-30
Identities = 176/211 (83%)
Strand = Plus / Minus
Query: 204 agcttctagctttatatctgctccataatgacatgaataatgcaagatacctttggaaaa 263
||||||| ||||| ||| | ||||||||||||||||||| |||||| | ||||||||||
Sbjct: 87933658 agcttctggctttgtatatactccataatgacatgaatagtgcaaggtgtctttggaaaa 87933599
Query: 264 gaataccacccgctataaagtcggcaaattctgaacttggggggatttggtcagtgggac 323
|||| | ||| |||||||| || ||||||||||||| |||||| ||||||||||| ||||
Sbjct: 87933598 gaatgcaacctgctataaaatctgcaaattctgaacctgggggaatttggtcagttggac 87933539
Query: 324 agagaatctggcagagggatttccctggcgtctacagcaccatcaacgcccaccagtggt 383
| |||||| || | | ||||||||||| |||||| |||||||||| | ||| ||||||
Sbjct: 87933538 aaagaatcgggtggtgagatttccctgggatctacaccaccatcaactctcactagtggt 87933479
Query: 384 ccgagacggtccagcccatcatggaagcact 414
|| | |||||||| || |||||||||||
Sbjct: 87933478 ttgaaattgtccagccaatgatggaagcact 87933448
>Sscrofa_Chr01
|| Length = 315321322
Score = 139 bits (70), Expect = 4e-30
Identities = 150/176 (85%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 675 agttagcccgactcaccgactacgtggctttcctcgaaaactgactgac---tccgagct 731
|||||||| ||||||||||||| |||||||||||| |||||||| | | |||||| |
Sbjct: 57469410 agttagccagactcaccgactatgtggctttcctcaaaaactgatttatcattccgagtt 57469469
Query: 732 ccagatccaccaccagaatcctgtatactgacaaatagagaaatgtaaggtttttatttg 791
| ||||||||| ||||| ||||||| |||| || | |||||||||| ||||||||||
Sbjct: 57469470 caagatccaccttcagaactctgtatattgaccaacaaagaaatgtaaaatttttatttg 57469529
Query: 792 caattttattggctggattgagcacctcagcgttccttactgagtatgtgataaaa 847
||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct: 57469530 taattttattggatggattaagcacctcagcattccttattgagtatgtgataaaa 57469585
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,047,187
Number of extensions: 247
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 12
Length of query: 1220
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1199
Effective length of database: 2,808,413,156
Effective search space: 3367287374044
Effective search space used: 3367287374044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)