Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013149
(1517 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070870.1| low affinity immunoglobulin gamma Fc region ... 311 1e-84
Alignment gi|NP_001103276.1| Fc fragment of IgG, low affinity IIc, recept... 207 3e-53
Alignment gi|NP_776963.1| high affinity immunoglobulin gamma Fc receptor ... 157 3e-38
Alignment gi|NP_001093780.1| high affinity immunoglobulin epsilon recepto... 146 5e-35
Alignment gi|NP_776964.1| low affinity immunoglobulin gamma Fc region rec... 140 4e-33
Alignment gi|NP_776742.1| low affinity immunoglobulin gamma Fc region rec... 136 4e-32
Alignment gi|NP_001179494.1| Fc receptor-like B [Bos taurus]. 102 9e-22
Alignment gi|XP_002685894.1| PREDICTED: Fc receptor-like B-like [Bos taur... 102 9e-22
Alignment gi|XP_002686001.1| PREDICTED: Fc receptor-like 3 [Bos taurus]. 73 6e-13
Alignment gi|XP_593037.5| PREDICTED: Fc receptor-like 3 [Bos taurus]. 73 6e-13
>ref|NP_001070870.1| low affinity immunoglobulin gamma Fc region receptor III isoform 1
[Bos taurus].
Length = 250
Score = 311 bits (796), Expect = 1e-84
Identities = 150/251 (59%), Positives = 185/251 (73%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ VSA T DP K+VV+LDP W+ +L D VTLKCQG YP D+ST+W
Sbjct: 1 MWQLLPPAALLLLVSADTQTADPSKAVVLLDPQWNHVLTNDRVTLKCQGDYPVEDNSTKW 60
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
NGTLIS++ SY I D V +SGEY C+TGLSA SDP++LEV+ GWLLLQ + VV
Sbjct: 61 WHNGTLISSQTPSYFIADVKVQDSGEYKCQTGLSAPSDPVKLEVHVGWLLLQVAQRVVNV 120
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
G+ IRL+CH+WK + KVQYF+NG GKK+SH N ++HIP A L+ GSYFCRGII + N
Sbjct: 121 GKPIRLKCHSWKKTPVAKVQYFRNGRGKKYSHGNSDFHIPEAKLEHSGSYFCRGIIGSKN 180
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 784
SSE+V++TVQ ++ + SFFLPWHQI FCLVMG LFAVDTGLYFSVR+ L+SS E+W
Sbjct: 181 ESSESVQITVQAPETLQTVSSFFLPWHQITFCLVMGVLFAVDTGLYFSVRRHLQSS-EEW 239
Query: 785 RNGKVTWSRDP 817
R+GKVTWS+ P
Sbjct: 240 RDGKVTWSKGP 250
>ref|NP_001103276.1| Fc fragment of IgG, low affinity IIc, receptor for (CD32) [Bos
taurus].
Length = 278
Score = 207 bits (526), Expect = 3e-53
Identities = 107/233 (45%), Positives = 138/233 (59%), Gaps = 1/233 (0%)
Frame = +2
Query: 128 DPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLI-SNKASSYSITDAT 304
D PK+VV + P W +L +D VTL CQG + T W NG+ I + K SYS A
Sbjct: 46 DLPKAVVSIQPAWINVLREDHVTLMCQGTSFSAGNLTTWFHNGSSIHTQKQPSYSFR-AG 104
Query: 305 VGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQ 484
+ G Y C+ ++ SDP+ L+V WLLLQ P V QEGE I LRCH+W+N + K+
Sbjct: 105 SNDGGSYRCQREQTSLSDPVHLDVISDWLLLQTPSLVFQEGEPIMLRCHSWRNQPLNKIT 164
Query: 485 YFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPIL 664
++Q+G K FS+Q + IP A L G Y C I SS+ V +TVQ +
Sbjct: 165 FYQDGKSKTFSYQRTNFSIPRANLSHRGQYHCTAFIGKMLHSSQPVNITVQDGNEGPAVP 224
Query: 665 SFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDWRNGKVTWSRDPQD 823
F PW+QI FCLVMG L AVDTGLYFSV++ L+SS D +N KV WS+DPQD
Sbjct: 225 LIFSPWYQITFCLVMGLLLAVDTGLYFSVQRDLQSSMGDGKNNKVRWSQDPQD 277
>ref|NP_776963.1| high affinity immunoglobulin gamma Fc receptor I [Bos taurus].
Length = 349
Score = 157 bits (396), Expect = 3e-38
Identities = 80/189 (42%), Positives = 116/189 (61%), Gaps = 2/189 (1%)
Frame = +2
Query: 128 DPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATV 307
DP K+V+ L PPW + ++++VTL C+G + PGD +T+W NGT I A YSI AT
Sbjct: 18 DPTKAVITLKPPWVSVFQEENVTLLCEGPHRPGDTATQWFLNGTAIKTLAPRYSINSATF 77
Query: 308 GNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQY 487
+SGEY C+TGLS SDP++LE++ WLLLQ V EG+ + LRCH WKN+ + K+ +
Sbjct: 78 DDSGEYKCQTGLSMLSDPVQLEIHSDWLLLQVTSRVFTEGDPLALRCHAWKNMPVYKMLF 137
Query: 488 FQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPIL- 664
+++G +FS Q+ E+ I L G Y C G + +S V +T++ P+P+L
Sbjct: 138 YKDGKPFRFSSQDSEFTILQTNLSHNGIYHCSG-ERRRRYTSAGVSITIK-ELFPAPVLR 195
Query: 665 -SFFLPWHQ 688
SF P HQ
Sbjct: 196 TSFSSP-HQ 203
>ref|NP_001093780.1| high affinity immunoglobulin epsilon receptor subunit alpha [Bos
taurus].
Length = 260
Score = 146 bits (368), Expect = 5e-35
Identities = 85/228 (37%), Positives = 124/228 (54%)
Frame = +2
Query: 137 KSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATVGNS 316
KS V L+PPW ++L+ D+VTL C D S+ W NGT + S + I A + +S
Sbjct: 30 KSKVSLNPPWRKILKGDAVTLTCGTNGSSEDQSSLWIHNGTSFTTNNSRWHIVKARMQDS 89
Query: 317 GEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQN 496
GEY C+ A S+P+ L V WL++QA V+ EGES+ LRCH+WKN+ + KV Y+++
Sbjct: 90 GEYQCRIKGFAISEPVYLNVISDWLIIQASAEVMMEGESLFLRCHSWKNLNVFKVIYYKD 149
Query: 497 GMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPILSFFL 676
K+ ++N I N T + G Y+C G I+ S +K+ V K P P ++F
Sbjct: 150 NKALKYWYENHNISITNVTEGNSGIYYCVGRIQRLPYISNKLKIIV---KKPYPQSNYF- 205
Query: 677 PWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDWRNGKVTWSRDPQ 820
W Q + L++ LFAVDTGL S ++ + R K DPQ
Sbjct: 206 -WLQFLIPLLVVILFAVDTGLLISTQQQFTLLLKMKRTRKRNRFTDPQ 252
>ref|NP_776964.1| low affinity immunoglobulin gamma Fc region receptor II-b precursor
[Bos taurus].
Length = 296
Score = 140 bits (352), Expect = 4e-33
Identities = 75/178 (42%), Positives = 99/178 (55%), Gaps = 1/178 (0%)
Frame = +2
Query: 128 DPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLI-SNKASSYSITDAT 304
D PK+VV + P W +L +D VTL CQG + T W NG+ I + K SYS A
Sbjct: 45 DLPKAVVTIQPAWINVLREDHVTLTCQGTSFSAGNLTTWFHNGSSIHTQKQPSYSFR-AG 103
Query: 305 VGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQ 484
+SG Y C+ ++ SDP+ L+V WLLLQ P V QEGE I LRCH+W+N + K+
Sbjct: 104 SNDSGSYRCQREQTSLSDPVHLDVISDWLLLQTPSLVFQEGEPIMLRCHSWRNQPLNKIT 163
Query: 485 YFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSP 658
++Q+ K FS+Q + IP A L G Y C I SS+ V +TVQ S S P
Sbjct: 164 FYQDRKSKIFSYQRTNFSIPRANLSHSGQYHCTAFIGKMLHSSQPVNITVQESSSSGP 221
>ref|NP_776742.1| low affinity immunoglobulin gamma Fc region receptor III isoform 2
[Bos taurus].
Length = 168
Score = 136 bits (343), Expect = 4e-32
Identities = 74/145 (51%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Frame = +2
Query: 389 LLLQAPRWV-VQEGESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEY-HIPNATLKD 562
++L P+W V + + L+C + +++ NG S Q Y HIP A L+
Sbjct: 27 VVLLDPQWNHVLTNDRVTLKCQGDYPVEDNSTKWWHNGT--LISSQTPSYFHIPEAKLEH 84
Query: 563 GGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLY 742
GSYFCRGII + N SSE+V++TVQ ++ + SFFLPWHQI FCLVMG LFAVDTGLY
Sbjct: 85 SGSYFCRGIIGSKNESSESVQITVQAPETLQTVSSFFLPWHQITFCLVMGVLFAVDTGLY 144
Query: 743 FSVRKVLRSSKEDWRNGKVTWSRDP 817
FSVR+ L+SS E+WR+GKVTWS+ P
Sbjct: 145 FSVRRHLQSS-EEWRHGKVTWSKGP 168
Score = 89.4 bits (220), Expect = 8e-18
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ +SA T DP K+VV+LDP W+ +L D VTLKCQG YP D+ST+W
Sbjct: 1 MWQLLPPAALLLLLSADTQTADPSKAVVLLDPQWNHVLTNDRVTLKCQGDYPVEDNSTKW 60
Query: 245 RWNGTLISNKASSY-SITDATVGNSGEYTCKTGLSAQSD 358
NGTLIS++ SY I +A + +SG Y C+ + ++++
Sbjct: 61 WHNGTLISSQTPSYFHIPEAKLEHSGSYFCRGIIGSKNE 99
>ref|NP_001179494.1| Fc receptor-like B [Bos taurus].
Length = 417
Score = 102 bits (254), Expect = 9e-22
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 8/186 (4%)
Frame = +2
Query: 104 VSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDD----STEWRWNGTLISN 271
V + A P K ++ L PPW + + + VTL+C G +P + ST W L+ +
Sbjct: 11 VPSSGQAATPEKPILSLHPPWTTIFKGEKVTLRCDGYHPLLLELRPISTLWYLGHLLLPS 70
Query: 272 KASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCH 451
S V G Y C+T + SDP+ L V WL+LQ P V EGE + +RC
Sbjct: 71 YKKSIE-----VHTPGVYRCQTRGAPVSDPIHLSVSNDWLILQVPYAAVFEGEPLVMRCR 125
Query: 452 TWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGI----IKNYNLSSEA 619
W + T+ K+ Y+ +G ++ H + Y +P A D G Y C G +++ + S
Sbjct: 126 GWYDKTVYKLHYYHDGQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIPVESAPMFSAK 185
Query: 620 VKVTVQ 637
V VTVQ
Sbjct: 186 VAVTVQ 191
>ref|XP_002685894.1| PREDICTED: Fc receptor-like B-like [Bos taurus].
Length = 417
Score = 102 bits (254), Expect = 9e-22
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 8/186 (4%)
Frame = +2
Query: 104 VSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDD----STEWRWNGTLISN 271
V + A P K ++ L PPW + + + VTL+C G +P + ST W L+ +
Sbjct: 11 VPSSGQAATPEKPILSLHPPWTTIFKGEKVTLRCDGYHPLLLELRPISTLWYLGHLLLPS 70
Query: 272 KASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCH 451
S V G Y C+T + SDP+ L V WL+LQ P V EGE + +RC
Sbjct: 71 YKKSIE-----VHTPGVYRCQTRGAPVSDPIHLSVSNDWLILQVPYAAVFEGEPLVMRCR 125
Query: 452 TWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGI----IKNYNLSSEA 619
W + T+ K+ Y+ +G ++ H + Y +P A D G Y C G +++ + S
Sbjct: 126 GWYDKTVYKLHYYHDGQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIPVESAPMFSAK 185
Query: 620 VKVTVQ 637
V VTVQ
Sbjct: 186 VAVTVQ 191
>ref|XP_002686001.1| PREDICTED: Fc receptor-like 3 [Bos taurus].
Length = 759
Score = 73.2 bits (178), Expect = 6e-13
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Frame = +2
Query: 134 PKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATVGN 313
PK+ ++L+PPW KD VTL C+ + P W +N L++ K+ + +
Sbjct: 63 PKAFLLLNPPWSTNFHKDEVTLTCRDSLSPAQGDIYWYYNENLLNKKSE-----EIQIHK 117
Query: 314 SGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHT-----WKNITIQK 478
+G Y CKT S+ SDP+ ++ L+LQAP V EG+ + LRC K +
Sbjct: 118 TGYYKCKTQRSSLSDPVHVDFSFDKLILQAPHSVF-EGDEVVLRCQAREEAKEKRFYRNE 176
Query: 479 VQYFQNGMGKKFSHQNFEYH 538
+Q N + S N +YH
Sbjct: 177 IQIQSNFTLQSVSMNNDKYH 196
>ref|XP_593037.5| PREDICTED: Fc receptor-like 3 [Bos taurus].
Length = 876
Score = 73.2 bits (178), Expect = 6e-13
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Frame = +2
Query: 134 PKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATVGN 313
PK+ ++L+PPW KD VTL C+ + P W +N L++ K+ + +
Sbjct: 63 PKAFLLLNPPWSTNFHKDEVTLTCRDSLSPAQGDIYWYYNENLLNKKSE-----EIQIHK 117
Query: 314 SGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHT-----WKNITIQK 478
+G Y CKT S+ SDP+ ++ L+LQAP V EG+ + LRC K +
Sbjct: 118 TGYYKCKTQRSSLSDPVHVDFSFDKLILQAPHSVF-EGDEVVLRCQAREEAKEKRFYRNE 176
Query: 479 VQYFQNGMGKKFSHQNFEYH 538
+Q N + S N +YH
Sbjct: 177 IQIQSNFTLQSVSMNNDKYH 196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,067,961
Number of extensions: 1381241
Number of successful extensions: 4430
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4392
Number of HSP's successfully gapped: 17
Length of query: 505
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 398
Effective length of database: 14,140,958
Effective search space: 5628101284
Effective search space used: 5628101284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013149
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013149
(1517 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536141.2| PREDICTED: similar to Low affinity immunoglobul... 268 1e-71
Alignment gi|XP_545775.2| PREDICTED: similar to Fc receptor-like and muci... 162 1e-39
Alignment gi|XP_855551.1| PREDICTED: high affinity IgG Fc gamma receptor ... 156 4e-38
Alignment gi|NP_001002976.1| high affinity immunoglobulin gamma Fc recept... 154 3e-37
Alignment gi|NP_001104236.1| high affinity immunoglobulin epsilon recepto... 151 1e-36
Alignment gi|XP_547521.2| PREDICTED: similar to Fc receptor-like 4 [Canis... 93 6e-19
Alignment gi|XP_854859.1| PREDICTED: similar to Fc receptor-like 2 [Canis... 59 9e-09
Alignment gi|XP_542917.2| PREDICTED: similar to sialoadhesin precursor [C... 58 3e-08
>ref|XP_536141.2| PREDICTED: similar to Low affinity immunoglobulin gamma Fc region
receptor III-A precursor (IgG Fc receptor III-2)
(Fc-gamma RIII-alpha) (Fc-gamma RIIIa) (FcRIIIa)
(Fc-gamma RIII) (FcRIII) (Antigen CD16-A) (FcR-10)
[Canis familiaris].
Length = 248
Score = 268 bits (685), Expect = 1e-71
Identities = 141/249 (56%), Positives = 172/249 (69%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ VSAGT A D PK+VV+L+P W+R+L DSVTLKCQG + D+ T W
Sbjct: 1 MWQLVSSTALLLLVSAGTQA-DVPKAVVVLEPKWNRVLTMDSVTLKCQGDHLLRDNYT-W 58
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
NG ISN+ S+Y I +A++ NSGEY C+T S SDP++LEV+ GWLLLQ PR V QE
Sbjct: 59 LHNGRPISNQISTYIIKNASIKNSGEYRCQTDQSKLSDPVQLEVHTGWLLLQVPRLVFQE 118
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
GE I+L+CH+WKN ++ VQYFQNG GKKF + N EYHIP AT + GSYFCRGII N
Sbjct: 119 GELIQLKCHSWKNTPVRNVQYFQNGRGKKFFYNNSEYHIPAATSEHNGSYFCRGIIGKKN 178
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 784
SSEAV + +QGS PS L W QI F LVM LFAVDTGLYF+V++ LRSS +
Sbjct: 179 ESSEAVNIIIQGSSLPSTSL-LLSHWPQIPFSLVMALLFAVDTGLYFAVQRDLRSSMGNL 237
Query: 785 RNGKVTWSR 811
+N KV WS+
Sbjct: 238 KNSKVIWSQ 246
>ref|XP_545775.2| PREDICTED: similar to Fc receptor-like and mucin-like 1 [Canis
familiaris].
Length = 774
Score = 162 bits (409), Expect = 1e-39
Identities = 86/180 (47%), Positives = 113/180 (62%)
Frame = +2
Query: 110 AGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYS 289
AGT A PKSV+ L+PPW +L+ DSVTLKCQGA+ ++ T+W NG+ + S
Sbjct: 180 AGTPA-GLPKSVLDLEPPWINVLQGDSVTLKCQGAHR-AEEHTQWYHNGSFLPILVQSNY 237
Query: 290 ITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNIT 469
+A +SGEY C+ ++ SDP+ L+V WLLLQ PR V Q+GESIRLRCH+WKN
Sbjct: 238 SFEAKKQDSGEYRCQMYQTSVSDPVHLDVTSDWLLLQTPRLVFQKGESIRLRCHSWKNKL 297
Query: 470 IQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKS 649
+ K+ +FQNG K+FS N + IP A L G Y C G+I S+ V +TVQGS S
Sbjct: 298 LYKITFFQNGKSKQFSSLNSTFFIPEANLSHSGHYHCTGMIGQMLRLSQPVAITVQGSDS 357
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Frame = +2
Query: 353 SDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFE 532
S P L V WL+LQ P + EG+ + LRC W++ + +V ++++G N E
Sbjct: 482 SKPFHLIVSYDWLILQGPVSPIFEGDPLTLRCQAWQDWPLAQVTFYRDGSAMGPPGPNRE 541
Query: 533 YHIPNATLKDGGSYFCRGIIKN------YNLSSEAVKVTVQGSKSPSPIL 664
+ I D G Y C GI+++ SS A+K+ P+P+L
Sbjct: 542 FSIAVVQETDSGHYHCSGILRSPGPGSPETASSVAIKIQ---ELFPAPLL 588
>ref|XP_855551.1| PREDICTED: high affinity IgG Fc gamma receptor 1 [Canis
familiaris].
Length = 372
Score = 156 bits (395), Expect = 4e-38
Identities = 80/187 (42%), Positives = 111/187 (59%)
Frame = +2
Query: 104 VSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASS 283
V AG DP K+V+ L PPW + +++SVTL C+G + PGD ST+W NGT
Sbjct: 11 VPAGAQT-DPVKAVITLQPPWVSVFQEESVTLWCEGPHLPGDSSTQWFLNGTATQTLTPR 69
Query: 284 YSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKN 463
Y I A+V ++GEY C+TGLS SDP++LE+++ WL+LQ V EGE + LRCH W N
Sbjct: 70 YRIAAASVNDNGEYRCQTGLSVLSDPIQLEIHRDWLILQVSGRVFTEGEPLTLRCHGWNN 129
Query: 464 ITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGS 643
+ V ++QNG KFS QN E+ I TL G Y C + K + S V +T++
Sbjct: 130 KLVYNVLFYQNGTVLKFSPQNSEFTILKTTLHHNGIYHCSAMGK-HRYESAGVSITIK-E 187
Query: 644 KSPSPIL 664
P+P+L
Sbjct: 188 LFPAPVL 194
Score = 55.8 bits (133), Expect = 1e-07
Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 13/213 (6%)
Frame = +2
Query: 179 EKDSVTLKCQGAYPPGDDSTEWRWNGTLI--SNKASSYSITDATVGNSGEYTCKTGLSAQ 352
E + +TL+C G + + NGT++ S + S ++I T+ ++G Y C +
Sbjct: 116 EGEPLTLRCHGWNNKLVYNVLFYQNGTVLKFSPQNSEFTILKTTLHHNGIYHCSAMGKHR 175
Query: 353 SDPLRL-----EVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQ-YFQNGMGKKF 514
+ + E++ +L + + EG + L C T + +Q YF MG K
Sbjct: 176 YESAGVSITIKELFPAPVLKASLSSPILEGHVVNLSCETKLLLQRPGLQLYFSFYMGSKT 235
Query: 515 ---SHQNFEYHIPNATLKDGGSYFCRGIIKNYNL--SSEAVKVTVQGSKSPSPILSFFLP 679
+ + EY I A +D G Y+C ++ N+ S +++ V G ++ +P+
Sbjct: 236 LLSRNTSSEYQILTAKKEDSGLYWCEATTEDGNVVKRSPELELQVVGPQTLTPV------ 289
Query: 680 WHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKE 778
W ++F + MG +F VDT + K L+ K+
Sbjct: 290 WFHVLFYVAMGMIFLVDTIFCMIIHKELQRKKK 322
>ref|NP_001002976.1| high affinity immunoglobulin gamma Fc receptor I [Canis lupus
familiaris].
Length = 372
Score = 154 bits (388), Expect = 3e-37
Identities = 79/187 (42%), Positives = 110/187 (58%)
Frame = +2
Query: 104 VSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASS 283
V AG DP K+V+ L PPW + +++SVTL C+G + PGD ST+W NGT
Sbjct: 11 VPAGAQT-DPVKAVITLQPPWVSVFQEESVTLWCEGPHLPGDSSTQWFLNGTATQTLTPR 69
Query: 284 YSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKN 463
Y I A+V ++GEY C+TGLS SDP++L +++ WL+LQ V EGE + LRCH W N
Sbjct: 70 YRIAAASVNDNGEYRCQTGLSVLSDPIQLGIHRDWLILQVSGRVFTEGEPLTLRCHGWNN 129
Query: 464 ITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGS 643
+ V ++QNG KFS QN E+ I TL G Y C + K + S V +T++
Sbjct: 130 KLVYNVLFYQNGTVLKFSPQNSEFTILKTTLHHNGIYHCSAMGK-HRYESAGVSITIK-E 187
Query: 644 KSPSPIL 664
P+P+L
Sbjct: 188 LFPAPVL 194
Score = 55.8 bits (133), Expect = 1e-07
Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 13/213 (6%)
Frame = +2
Query: 179 EKDSVTLKCQGAYPPGDDSTEWRWNGTLI--SNKASSYSITDATVGNSGEYTCKTGLSAQ 352
E + +TL+C G + + NGT++ S + S ++I T+ ++G Y C +
Sbjct: 116 EGEPLTLRCHGWNNKLVYNVLFYQNGTVLKFSPQNSEFTILKTTLHHNGIYHCSAMGKHR 175
Query: 353 SDPLRL-----EVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQ-YFQNGMGKKF 514
+ + E++ +L + + EG + L C T + +Q YF MG K
Sbjct: 176 YESAGVSITIKELFPAPVLKASLSSPILEGHVVNLSCETKLLLQRPGLQLYFSFYMGSKT 235
Query: 515 ---SHQNFEYHIPNATLKDGGSYFCRGIIKNYNL--SSEAVKVTVQGSKSPSPILSFFLP 679
+ + EY I A +D G Y+C ++ N+ S +++ V G ++ +P+
Sbjct: 236 LLSRNTSSEYQILTAKKEDSGLYWCEATTEDGNVVKRSPELELQVVGPQTLTPV------ 289
Query: 680 WHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKE 778
W ++F + MG +F VDT + K L+ K+
Sbjct: 290 WFHVLFYVAMGMIFLVDTIFCMIIHKELQRKKK 322
>ref|NP_001104236.1| high affinity immunoglobulin epsilon receptor subunit alpha [Canis
lupus familiaris].
Length = 252
Score = 151 bits (382), Expect = 1e-36
Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 5/224 (2%)
Frame = +2
Query: 107 SAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSY 286
S G + D K V ++PPW+ +L+ DSVTL C G DS W N T S
Sbjct: 19 SPGVMSSDTLKPTVSMNPPWNTILKDDSVTLTCTGNNSLEVDSAVWLHNNTTWQETTSRL 78
Query: 287 SITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNI 466
I A + +SGEY C+ S SDP+ L V+ WL+LQA VV EGES +RCH+WKN+
Sbjct: 79 DINKAQIQDSGEYRCRENRSILSDPVYLTVFTEWLILQASANVVMEGESFLIRCHSWKNL 138
Query: 467 TIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSK 646
+ KV Y+++G+ ++ ++NF I N T K+ G+Y C G I+ +S+ + + V+ K
Sbjct: 139 RLTKVTYYKDGIPIRYWYENFNISISNVTTKNSGNYSCSGQIQQKGYTSKVLNIIVK--K 196
Query: 647 SPSPI-----LSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVL 763
P+ L F +P ++ LFAVDTGL+ S ++ L
Sbjct: 197 EPTKQNKYSGLQFLIP--------LVVILFAVDTGLFISTKQQL 232
>ref|XP_547521.2| PREDICTED: similar to Fc receptor-like 4 [Canis familiaris].
Length = 1052
Score = 93.2 bits (230), Expect = 6e-19
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 2/188 (1%)
Frame = +2
Query: 125 EDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTE-WRWN-GTLISNKASSYSITD 298
E PK+V+ L PPW + D+VTL C ++ + E ++W GT I + ++
Sbjct: 493 EAVPKAVISLHPPWTVFFKGDAVTLTCHVSHIYTAKNRELYQWYLGTEILREIPGNTLK- 551
Query: 299 ATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQK 478
V NSGEY C+T S SD + L L+LQAP V EG+S+ L+C ++ ++
Sbjct: 552 --VQNSGEYKCQTQNSLLSDGVTLIFSTAKLILQAPPSVF-EGDSVTLKCQANVDLALKN 608
Query: 479 VQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSP 658
++NG K ++ +HI A LKD G Y C G N + SS +K+ VQ P P
Sbjct: 609 KSLYKNGKMLKILDESSSFHIQQAGLKDNGEYHCAGSEINCSFSSNRIKIQVQ-ELFPHP 667
Query: 659 ILSFFLPW 682
+L W
Sbjct: 668 VLRSRPSW 675
Score = 79.0 bits (193), Expect = 1e-14
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
Frame = +2
Query: 134 PKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWN--GTLISNKASSYSITDATV 307
PK V+ L PPW + + ++VTL C + + W + G + +K ++ V
Sbjct: 29 PKPVISLHPPWTVVFKGETVTLTCHVPHLRAAEYITWHLSYFGKDLLHKTPGNTLK---V 85
Query: 308 GNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQY 487
+SG + C+T S SD +RL WL+LQAP V EG+++ LRC + V+Y
Sbjct: 86 HDSGRFRCQTKDSPPSDSVRLIFSSDWLILQAPHTVF-EGDTLVLRCQVKGRQKLITVKY 144
Query: 488 FQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKN----YNLSSEAVKV 628
NG S+Q + IP A+L + G Y C G ++ Y S+ +K+
Sbjct: 145 SWNGKVISVSNQGQDLLIPQASLNNSGHYQCIGFLERDHYVYKSSTRIIKI 195
>ref|XP_854859.1| PREDICTED: similar to Fc receptor-like 2 [Canis familiaris].
Length = 462
Score = 59.3 bits (142), Expect = 9e-09
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Frame = +2
Query: 386 WLLLQAPRWVVQEGESIRLRCHT----WKNITIQKVQYFQNGMGKKFSHQNFEYHIPNAT 553
WL L+AP + EG+ I L C WK IQ + Y+++G FS++ F + IP+A
Sbjct: 27 WLTLRAPS-AIFEGDRIDLICQRKTDKWK---IQTMAYYKDGKKLHFSNEVFSFSIPSAV 82
Query: 554 LKDGGSYFC----RGIIKNYNLSSEAVKVTVQGSKSPSPILSFFLPW 682
L D GSY C R ++ Y+ S ++K+ VQ P P+L+ W
Sbjct: 83 LSDSGSYSCSATVRIYLRYYSKKSNSIKIQVQ-ELFPYPVLTVSASW 128
>ref|XP_542917.2| PREDICTED: similar to sialoadhesin precursor [Canis familiaris].
Length = 1719
Score = 57.8 bits (138), Expect = 3e-08
Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 8/189 (4%)
Frame = +2
Query: 134 PKSV-VILDPPWDRLLEKDSVTLKCQ--GAYPPGDDSTEWRWNGTLISNKASSYSITDAT 304
PK V ++L P +L D V L CQ +YP +W +GT + + ++ AT
Sbjct: 238 PKGVEILLSPSGRNILPGDLVILTCQVNSSYPEVS-FVQWTKDGTQLQVQGRMLKLSQAT 296
Query: 305 VGNSGEYTCKTGL---SAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQ 475
+G++G YTC+ G S+ S P+ L ++ + + +P ++ E +++ L C K +
Sbjct: 297 LGDAGIYTCQAGNAVGSSVSPPISLHIFMAEVQV-SPAGLILENQTVTLTCKLPKEAPSE 355
Query: 476 -KVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSP 652
+ +++N + + +H + + +AT D G YFC + N + V+V S P
Sbjct: 356 LRYSWYKNHVLLEDAHSHI-LQLRSATRADTGFYFCE--VHNAYGRERSGPVSVVVSYPP 412
Query: 653 -SPILSFFL 676
+P L+ FL
Sbjct: 413 LTPDLTAFL 421
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,337,547
Number of extensions: 1270641
Number of successful extensions: 4548
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4508
Number of HSP's successfully gapped: 12
Length of query: 505
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 398
Effective length of database: 15,307,552
Effective search space: 6092405696
Effective search space used: 6092405696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013149
(1517 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999556.1| low affinity immunoglobulin gamma Fc region rec... 509 e-144
Alignment gi|XP_003125725.1| PREDICTED: high affinity immunoglobulin epsi... 158 7e-39
Alignment gi|XP_001929174.1| PREDICTED: high affinity immunoglobulin epsi... 158 7e-39
Alignment gi|NP_001028185.1| low affinity immunoglobulin gamma Fc region ... 157 1e-38
Alignment gi|NP_001028183.1| high affinity immunoglobulin gamma Fc recept... 156 3e-38
Alignment gi|XP_003361390.1| PREDICTED: Fc receptor-like B-like [Sus scro... 97 2e-20
Alignment gi|XP_001925993.1| PREDICTED: Fc receptor-like B [Sus scrofa]. 97 2e-20
Alignment gi|XP_003125740.2| PREDICTED: Fc receptor-like protein 3 [Sus s... 86 4e-17
Alignment gi|XP_001927593.3| PREDICTED: Fc receptor-like protein 4-like [... 73 5e-13
Alignment gi|XP_003125741.1| PREDICTED: LOW QUALITY PROTEIN: Fc receptor-... 72 8e-13
>ref|NP_999556.1| low affinity immunoglobulin gamma Fc region receptor III [Sus
scrofa].
Length = 256
Score = 509 bits (1312), Expect = e-144
Identities = 243/253 (96%), Positives = 243/253 (96%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ VSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW
Sbjct: 1 MWQLLSPTALLLLVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 60
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE
Sbjct: 61 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 120
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN
Sbjct: 121 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 180
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 784
LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW
Sbjct: 181 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 240
Query: 785 RNGKVTWSRDPQD 823
RNGKVTWSRDPQD
Sbjct: 241 RNGKVTWSRDPQD 253
>ref|XP_003125725.1| PREDICTED: high affinity immunoglobulin epsilon receptor subunit
alpha-like [Sus scrofa].
Length = 261
Score = 158 bits (400), Expect = 7e-39
Identities = 89/231 (38%), Positives = 133/231 (57%), Gaps = 3/231 (1%)
Frame = +2
Query: 137 KSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATVGNS 316
+S V L+PPW+R+ ++VTL C G Y + T W N + K SS+ + +A G+S
Sbjct: 29 ESQVSLNPPWNRIFRGENVTLTCIGNYSLENYPTNWTHNNKTLEVKTSSWDLKNAKPGDS 88
Query: 317 GEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQN 496
G+Y C++ S+P+ LEV WLLLQ VV+EG+S LRCH WKN+ + KV Y+++
Sbjct: 89 GKYRCQSKDFTMSEPVHLEVISDWLLLQTSVPVVREGQSFLLRCHGWKNLNVYKVIYYKD 148
Query: 497 GMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPILSFFL 676
G K+ ++N I NA +D GSY+C GII+ +S + +T+Q + SPS +++
Sbjct: 149 GKALKYWYENHNLSITNAKREDSGSYWCTGIIQKIPKNSTTLTITIQ-TDSPSVPSNYY- 206
Query: 677 PWHQIIFCLVMGFLFAVDTGLYFSVRKVLR---SSKEDWRNGKVTWSRDPQ 820
W Q+ L++ LF VDTGL S ++ R K+ R K T DPQ
Sbjct: 207 -WLQLHIPLLVAILFVVDTGLLISTQQQFRFLLKIKKTRRGKKFT---DPQ 253
>ref|XP_001929174.1| PREDICTED: high affinity immunoglobulin epsilon receptor subunit
alpha-like [Sus scrofa].
Length = 239
Score = 158 bits (400), Expect = 7e-39
Identities = 89/231 (38%), Positives = 133/231 (57%), Gaps = 3/231 (1%)
Frame = +2
Query: 137 KSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATVGNS 316
+S V L+PPW+R+ ++VTL C G Y + T W N + K SS+ + +A G+S
Sbjct: 7 ESQVSLNPPWNRIFRGENVTLTCIGNYSLENYPTNWTHNNKTLEVKTSSWDLKNAKPGDS 66
Query: 317 GEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQN 496
G+Y C++ S+P+ LEV WLLLQ VV+EG+S LRCH WKN+ + KV Y+++
Sbjct: 67 GKYRCQSKDFTMSEPVHLEVISDWLLLQTSVPVVREGQSFLLRCHGWKNLNVYKVIYYKD 126
Query: 497 GMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPILSFFL 676
G K+ ++N I NA +D GSY+C GII+ +S + +T+Q + SPS +++
Sbjct: 127 GKALKYWYENHNLSITNAKREDSGSYWCTGIIQKIPKNSTTLTITIQ-TDSPSVPSNYY- 184
Query: 677 PWHQIIFCLVMGFLFAVDTGLYFSVRKVLR---SSKEDWRNGKVTWSRDPQ 820
W Q+ L++ LF VDTGL S ++ R K+ R K T DPQ
Sbjct: 185 -WLQLHIPLLVAILFVVDTGLLISTQQQFRFLLKIKKTRRGKKFT---DPQ 231
>ref|NP_001028185.1| low affinity immunoglobulin gamma Fc region receptor II-b [Sus
scrofa].
Length = 297
Score = 157 bits (397), Expect = 1e-38
Identities = 80/177 (45%), Positives = 105/177 (59%)
Frame = +2
Query: 113 GTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSI 292
GTHA PK+ V L P W +L++DSVTL CQG + PG+ +T+W NG +
Sbjct: 42 GTHAV-LPKAEVKLQPAWINVLQEDSVTLTCQGDHDPGNTTTQWFHNGNFTWTENQPSFS 100
Query: 293 TDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITI 472
A +SG Y C+T S+ SDP+ L+V WLLLQ V QEGE I LRCH+W+N +
Sbjct: 101 FKARRASSGHYRCQTAYSSLSDPVHLDVISDWLLLQTSSLVFQEGEPILLRCHSWRNKPL 160
Query: 473 QKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGS 643
KV +FQNG KKFS+ + + IP A G Y C G I + SS++V +TVQGS
Sbjct: 161 HKVAFFQNGKSKKFSYVDSNFSIPQANQSHSGEYHCTGFIGKMSYSSQSVNITVQGS 217
>ref|NP_001028183.1| high affinity immunoglobulin gamma Fc receptor I [Sus scrofa].
Length = 346
Score = 156 bits (395), Expect = 3e-38
Identities = 76/179 (42%), Positives = 110/179 (61%)
Frame = +2
Query: 128 DPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATV 307
D K+V+ L PPW + ++++VTL+C+G + PGD ST+W NGT I Y I A +
Sbjct: 18 DQAKAVITLQPPWVSVFQEENVTLQCEGPHLPGDSSTQWFLNGTAIETLTPRYRIAAAGI 77
Query: 308 GNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQY 487
+SGEY C+TGLS SDP++LEV+K WLLLQ V EGE + LRCH W+N + + +
Sbjct: 78 NDSGEYRCQTGLSVPSDPVQLEVHKDWLLLQVSSRVFTEGEPLALRCHGWRNKLMYNILF 137
Query: 488 FQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPIL 664
+QNG KFS +N E+ I L G Y C G ++ + +S V +T++ P+P+L
Sbjct: 138 YQNGKTFKFSPRNSEFTILKTNLSHNGIYHCSG-MRVHRYTSAGVSITIK-ELFPAPVL 194
Score = 49.3 bits (116), Expect = 6e-06
Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 12/183 (6%)
Frame = +2
Query: 266 SNKASSYSITDATVGNSGEYTCKTGL------SAQSDPLRLEVYKGWLLLQAPRWVVQEG 427
S + S ++I + ++G Y C +G+ SA E++ +L + + + EG
Sbjct: 147 SPRNSEFTILKTNLSHNGIYHC-SGMRVHRYTSAGVSITIKELFPAPVLRASLSFPILEG 205
Query: 428 ESIRLRCHTWKNITIQKVQ-YFQNGMGKKF---SHQNFEYHIPNATLKDGGSYFCRGIIK 595
+ L C T +Q YF MG K + + Y + A +D G Y+C +
Sbjct: 206 NLVNLSCETKLLPQRPGLQLYFSFFMGSKTLMSRNTSSSYQMLTAKKEDSGLYWCEAATE 265
Query: 596 NYNLSSEAVKVTVQ--GSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRS 769
+ + + ++ +Q G + P+P+ W ++F L +G +F +DT Y ++K L+
Sbjct: 266 DGKVIKRSTELELQVLGPQPPTPV------WFHVVFYLAVGSVFLMDTVFYVIIQKQLQR 319
Query: 770 SKE 778
K+
Sbjct: 320 KKK 322
>ref|XP_003361390.1| PREDICTED: Fc receptor-like B-like [Sus scrofa].
Length = 415
Score = 97.1 bits (240), Expect = 2e-20
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Frame = +2
Query: 137 KSVVILDPPWDRLLEKDSVTLKCQGAYPPGDD----STEWRWNGTLISNKASSYSITDAT 304
K ++ L PPW + + + VTL+C G +P + ST W L+ + S +
Sbjct: 22 KPILSLHPPWTTIFKGERVTLRCDGYHPLLLELRPISTLWYLGHLLLPSHKKSIEVQ--- 78
Query: 305 VGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQ 484
G Y C+T + SDP+ L V WL+LQ P VV EGE + +RC W + + K+
Sbjct: 79 --TPGIYRCQTRGAPVSDPIHLSVSNDWLILQVPYAVVFEGEPLVMRCRGWYDKVVYKLH 136
Query: 485 YFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGI----IKNYNLSSEAVKVTVQ 637
Y+Q+ ++ H + Y +P A D G Y C G +++ + S V VTVQ
Sbjct: 137 YYQDDQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIPVESAPMFSAKVAVTVQ 191
>ref|XP_001925993.1| PREDICTED: Fc receptor-like B [Sus scrofa].
Length = 425
Score = 97.1 bits (240), Expect = 2e-20
Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 8/175 (4%)
Frame = +2
Query: 137 KSVVILDPPWDRLLEKDSVTLKCQGAYPPGDD----STEWRWNGTLISNKASSYSITDAT 304
K ++ L PPW + + + VTL+C G +P + ST W L+ + S +
Sbjct: 22 KPILSLHPPWTTIFKGERVTLRCDGYHPLLLELRPISTLWYLGHLLLPSHKKSIEVQ--- 78
Query: 305 VGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQ 484
G Y C+T + SDP+ L V WL+LQ P VV EGE + +RC W + + K+
Sbjct: 79 --TPGIYRCQTRGAPVSDPIHLSVSNDWLILQVPYAVVFEGEPLVMRCRGWYDKVVYKLH 136
Query: 485 YFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGI----IKNYNLSSEAVKVTVQ 637
Y+Q+ ++ H + Y +P A D G Y C G +++ + S V VTVQ
Sbjct: 137 YYQDDQPVRYFHSSANYTVPQARASDSGRYQCSGTMRIPVESAPMFSAKVAVTVQ 191
>ref|XP_003125740.2| PREDICTED: Fc receptor-like protein 3 [Sus scrofa].
Length = 695
Score = 86.3 bits (212), Expect = 4e-17
Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 4/183 (2%)
Frame = +2
Query: 134 PKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATVGN 313
PK+ ++L+PPW + D VTL C+ +Y P W +N L+ + + I
Sbjct: 21 PKAFLLLNPPWSTNFKGDKVTLTCKDSYSPSQGHISWYYNEKLLDKNSEAIQI-----DQ 75
Query: 314 SGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQ 493
+G+Y+CKT S+ SDP+ ++ WL+LQAP + + EG+ + LRC + T + V Y
Sbjct: 76 TGDYSCKTQRSSFSDPVHVDFLSDWLILQAP-YPIFEGDDVILRCPRREESTSETVFYKN 134
Query: 494 NGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNY----NLSSEAVKVTVQGSKSPSPI 661
+K S + +D G Y C K++ +S+ + + VQ S P+
Sbjct: 135 E---RKISSNYESSFTLTSVSRDHGKYHCSASKKSFWGTKKENSKPLMIQVQELFS-RPV 190
Query: 662 LSF 670
L+F
Sbjct: 191 LTF 193
>ref|XP_001927593.3| PREDICTED: Fc receptor-like protein 4-like [Sus scrofa].
Length = 578
Score = 72.8 bits (177), Expect = 5e-13
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 1/169 (0%)
Frame = +2
Query: 134 PKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATVGN 313
P+SV+ L PPW + + + L C G +W + V +
Sbjct: 75 PRSVISLQPPWTTAFQGERINLTCNGFQGSAPAKVKW-YRKNFRKRYPRETPGNTLEVRD 133
Query: 314 SGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQ 493
SGEY C+ S S+P+ L +LQAP V EG+ + LRC + V+Y
Sbjct: 134 SGEYKCQVPGSLLSNPVYLLFTPASFILQAPHSVF-EGDELVLRCQKRGKERLTSVKYTW 192
Query: 494 NGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKN-YNLSSEAVKVTVQ 637
NG S++ E IP A+L + GSY C G +N Y L S + +Q
Sbjct: 193 NGKIISNSNKGVELLIPQASLNNSGSYQCIGSFENAYILKSNLKVIRIQ 241
>ref|XP_003125741.1| PREDICTED: LOW QUALITY PROTEIN: Fc receptor-like protein 5-like
[Sus scrofa].
Length = 925
Score = 72.0 bits (175), Expect = 8e-13
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 3/180 (1%)
Frame = +2
Query: 134 PKSVVILDPPWDRLLEKDSVTLKCQG-AYPPGDDSTEWRWNGTLISNKASSYSITDA-TV 307
PK V+ L P W + ++V L C + + +RW + + S ++ + V
Sbjct: 21 PKPVISLHPLWTTFFQGETVMLTCNTFRFHAPEKIKLYRW---YLEGEIQSETLGNTHEV 77
Query: 308 GNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQY 487
+G Y C+ S SD + L L+LQAP +V ++ ES+ LRC N + +
Sbjct: 78 RETGMYKCQAQDSPPSDAVHLLFSSANLILQAPPYVFEK-ESVVLRCQAKANTELNGMTL 136
Query: 488 FQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIK-NYNLSSEAVKVTVQGSKSPSPIL 664
+++G + E+ I A LKD G Y C G+ K N +SS AVK+ VQ P P+L
Sbjct: 137 YKHGEVLGVPKKTSEFRIYQAGLKDNGEYRCTGLKKDNETISSNAVKIEVQ-ELFPRPVL 195
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,338,604
Number of extensions: 1094302
Number of successful extensions: 2759
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2727
Number of HSP's successfully gapped: 14
Length of query: 505
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 402
Effective length of database: 8,779,541
Effective search space: 3529375482
Effective search space used: 3529375482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013149
(1517 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653142.2| Fc receptor, IgG, low affinity IV [Mus musculus]. 253 3e-67
Alignment gi|NP_034318.2| low affinity immunoglobulin gamma Fc region rec... 187 2e-47
Alignment gi|NP_001070657.1| low affinity immunoglobulin gamma Fc region ... 158 1e-38
Alignment gi|NP_034317.1| low affinity immunoglobulin gamma Fc region rec... 158 1e-38
Alignment gi|NP_034316.1| high affinity immunoglobulin gamma Fc receptor ... 145 8e-35
Alignment gi|NP_034314.2| high affinity immunoglobulin epsilon receptor s... 134 2e-31
Alignment gi|NP_001025155.2| Fc receptor-like B [Mus musculus]. 95 2e-19
Alignment gi|NP_899045.3| Fc receptor-like protein 5 isoform a [Mus muscu... 76 6e-14
Alignment gi|NP_660123.1| Fc receptor-like A isoform 2 [Mus musculus]. 57 4e-08
Alignment gi|NP_001153687.1| Fc receptor-like A isoform 1 [Mus musculus]. 55 1e-07
>ref|NP_653142.2| Fc receptor, IgG, low affinity IV [Mus musculus].
Length = 249
Score = 253 bits (646), Expect = 3e-67
Identities = 125/253 (49%), Positives = 168/253 (66%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ +G A K+VV LDP W R+LE+DSVTL+CQG + P D+S +W
Sbjct: 1 MWQLLLPTALVLTAFSGIQA-GLQKAVVNLDPKWVRVLEEDSVTLRCQGTFSPEDNSIKW 59
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
N +LI ++ ++Y I A V +SG Y C+T LS SDP++LEV+ GWLLLQ +W+ QE
Sbjct: 60 FHNESLIPHQDANYVIQSARVKDSGMYRCQTALSTISDPVQLEVHMGWLLLQTTKWLFQE 119
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
G+ I LRCH+W+N ++KV Y QNG GKK+ H+N E IP AT D GSYFCRG+I + N
Sbjct: 120 GDPIHLRCHSWQNRPVRKVTYLQNGKGKKYFHENSELLIPKATHNDSGSYFCRGLIGHNN 179
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 784
SS + ++++ SP S F PWHQI FCL++G LFA+DT LYFSVR+ L+S D+
Sbjct: 180 KSSASFRISLGDPGSP----SMFPPWHQITFCLLIGLLFAIDTVLYFSVRRGLQSPVADY 235
Query: 785 RNGKVTWSRDPQD 823
K+ WS++PQD
Sbjct: 236 EEPKIQWSKEPQD 248
>ref|NP_034318.2| low affinity immunoglobulin gamma Fc region receptor III [Mus
musculus].
Length = 267
Score = 187 bits (474), Expect = 2e-47
Identities = 95/231 (41%), Positives = 137/231 (59%), Gaps = 1/231 (0%)
Frame = +2
Query: 134 PKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATVGN 313
PK+VV LDPPW ++L++D VTL C+G + PG+ ST+W N + I ++ S ATV +
Sbjct: 39 PKAVVKLDPPWIQVLKEDMVTLMCEGTHNPGNSSTQWFHNWSSIRSQVQSSYTFKATVND 98
Query: 314 SGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQ 493
SGEY C+ + SDP+ L V WLLLQ P+ V EGE+I LRCH+W+N + ++ +F
Sbjct: 99 SGEYRCQMEQTRLSDPVDLGVISDWLLLQTPQRVFLEGETITLRCHSWRNKLLNRISFFH 158
Query: 494 NGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPILSFF 673
N ++ H + IP A G Y+C+G + + S+ V +TVQ P+ S
Sbjct: 159 NEKSVRYHHYKSNFSIPKANHSHSGDYYCKGSLGSTQHQSKPVTITVQ---DPATTSSIS 215
Query: 674 LPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDWRNG-KVTWSRDPQD 823
L W+ F LVM LFAVDTGLYF VR+ L++ ++ WR + + PQD
Sbjct: 216 LVWYHTAFSLVMCLLFAVDTGLYFYVRRNLQTPRDYWRKSLSIRKHQAPQD 266
>ref|NP_001070657.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 1
[Mus musculus].
Length = 340
Score = 158 bits (399), Expect = 1e-38
Identities = 76/182 (41%), Positives = 113/182 (62%)
Frame = +2
Query: 104 VSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASS 283
++AGTH D PK+VV L+PPW ++L++D+VTL C+G + PG+ ST+W NG I ++ +
Sbjct: 36 LAAGTH--DLPKAVVKLEPPWIQVLKEDTVTLTCEGTHNPGNSSTQWFHNGRSIRSQVQA 93
Query: 284 YSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKN 463
ATV +SGEY C+ + SDP+ L V WLLLQ P+ V EGE+I LRCH+W+N
Sbjct: 94 SYTFKATVNDSGEYRCQMEQTRLSDPVDLGVISDWLLLQTPQLVFLEGETITLRCHSWRN 153
Query: 464 ITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGS 643
+ ++ +F N ++ H + + IP A G Y+C+G + S+ V +TVQG
Sbjct: 154 KLLNRISFFHNEKSVRYHHYSSNFSIPKANHSHSGDYYCKGSLGRTLHQSKPVTITVQGP 213
Query: 644 KS 649
KS
Sbjct: 214 KS 215
>ref|NP_034317.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 2
[Mus musculus].
Length = 293
Score = 158 bits (399), Expect = 1e-38
Identities = 76/182 (41%), Positives = 113/182 (62%)
Frame = +2
Query: 104 VSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASS 283
++AGTH D PK+VV L+PPW ++L++D+VTL C+G + PG+ ST+W NG I ++ +
Sbjct: 36 LAAGTH--DLPKAVVKLEPPWIQVLKEDTVTLTCEGTHNPGNSSTQWFHNGRSIRSQVQA 93
Query: 284 YSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKN 463
ATV +SGEY C+ + SDP+ L V WLLLQ P+ V EGE+I LRCH+W+N
Sbjct: 94 SYTFKATVNDSGEYRCQMEQTRLSDPVDLGVISDWLLLQTPQLVFLEGETITLRCHSWRN 153
Query: 464 ITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGS 643
+ ++ +F N ++ H + + IP A G Y+C+G + S+ V +TVQG
Sbjct: 154 KLLNRISFFHNEKSVRYHHYSSNFSIPKANHSHSGDYYCKGSLGRTLHQSKPVTITVQGP 213
Query: 644 KS 649
KS
Sbjct: 214 KS 215
>ref|NP_034316.1| high affinity immunoglobulin gamma Fc receptor I precursor [Mus
musculus].
Length = 404
Score = 145 bits (366), Expect = 8e-35
Identities = 73/178 (41%), Positives = 105/178 (58%)
Frame = +2
Query: 104 VSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASS 283
V G + K+V+ L PPW + +K++VTL C+G + PGD ST+W NGT + S
Sbjct: 20 VPVGGEVVNATKAVITLQPPWVSIFQKENVTLWCEGPHLPGDSSTQWFINGTAVQISTPS 79
Query: 284 YSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKN 463
YSI +A+ +SGEY C+ G S SDP++L+++ WLLLQA R V+ EGE + LRCH WKN
Sbjct: 80 YSIPEASFQDSGEYRCQIGSSMPSDPVQLQIHNDWLLLQASRRVLTEGEPLALRCHGWKN 139
Query: 464 ITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQ 637
+ V +++NG +FS + E I L G Y C G + +S V +TV+
Sbjct: 140 KLVYNVVFYRNGKSFQFSSDS-EVAILKTNLSHSGIYHCSG-TGRHRYTSAGVSITVK 195
Score = 54.3 bits (129), Expect = 2e-07
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 14/215 (6%)
Frame = +2
Query: 173 LLEKDSVTLKCQGAYPPGDDSTEWRWNGTLIS-NKASSYSITDATVGNSGEYTCK-TG-- 340
L E + + L+C G + + NG + S +I + +SG Y C TG
Sbjct: 124 LTEGEPLALRCHGWKNKLVYNVVFYRNGKSFQFSSDSEVAILKTNLSHSGIYHCSGTGRH 183
Query: 341 --LSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQ---YFQNGMG 505
SA E++ +L + EG + L C T N+ +Q+ +F +G
Sbjct: 184 RYTSAGVSITVKELFTTPVLRASVSSPFPEGSLVTLNCET--NLLLQRPGLQLHFSFYVG 241
Query: 506 KK---FSHQNFEYHIPNATLKDGGSYFCRGIIKNYNL--SSEAVKVTVQGSKSPSPILSF 670
K + + + EYHI A +D G Y+C ++ ++ S +++ V G +S +P+
Sbjct: 242 SKILEYRNTSSEYHIARAEREDAGFYWCEVATEDSSVLKRSPELELQVLGPQSSAPV--- 298
Query: 671 FLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSK 775
W I+F L +G +F+++T LY + ++ R K
Sbjct: 299 ---WFHILFYLSVGIMFSLNTVLYVKIHRLQREKK 330
>ref|NP_034314.2| high affinity immunoglobulin epsilon receptor subunit alpha
precursor [Mus musculus].
Length = 250
Score = 134 bits (336), Expect = 2e-31
Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 1/221 (0%)
Frame = +2
Query: 137 KSVVILDPPWDRLLEKDSVTLKCQGA-YPPGDDSTEWRWNGTLISNKASSYSITDATVGN 313
KSV+ LDPPW R+ + VTL C G + + +T+W NGT+ +S I ATV +
Sbjct: 27 KSVLTLDPPWIRIFTGEKVTLSCYGNNHLQMNSTTKWIHNGTVSEVNSSHLVIVSATVQD 86
Query: 314 SGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQ 493
SG+Y C+ +S P+ L V + WLLLQ +V S +RCH WKN ++KV Y++
Sbjct: 87 SGKYICQKQGLFKSKPVYLNVTQDWLLLQTSADMVLVHGSFDIRCHGWKNWNVRKVIYYR 146
Query: 494 NGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPILSFF 673
N +S+++ I ATL D G+Y C+G ++ S+ ++ V + ++
Sbjct: 147 NDHAFNYSYES-PVSIREATLNDSGTYHCKGYLRQVKYESDKFRIAVVKAYK----CKYY 201
Query: 674 LPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDWRNGK 796
W Q+IF L++ LFAVDTGL S + +S E + GK
Sbjct: 202 --WLQLIFPLLVAILFAVDTGLLLSTEEQFKSVLEIQKTGK 240
>ref|NP_001025155.2| Fc receptor-like B [Mus musculus].
Length = 427
Score = 94.7 bits (234), Expect = 2e-19
Identities = 67/229 (29%), Positives = 102/229 (44%), Gaps = 13/229 (5%)
Frame = +2
Query: 137 KSVVILDPPWDRLLEKDSVTLKCQGAYPPGDD----STEWRWNGTLISNKASSYSITDAT 304
K V+ L PPW + + + VTL+C G +P + ST W L+ + S +
Sbjct: 22 KPVLTLHPPWTTIFKGERVTLRCDGYHPLLLELRPISTLWYLGHVLLPSHKKSIEVQAP- 80
Query: 305 VGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQ 484
G Y C+T + SDP+ L V WL+LQ P V EGE + +RC W + + K+
Sbjct: 81 ----GVYRCQTRGAPVSDPIHLSVSNDWLILQVPYAAVFEGEPLVMRCRGWYDKVVYKLH 136
Query: 485 YFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGI----IKNYNLSSEAVKVTVQGSKSP 652
Y+ +G ++ H + Y + A D G Y C G +++ + S V VTVQ
Sbjct: 137 YYHDGQAVRYFHSSTNYTVLQARASDSGHYQCSGTMRIPVESAPMFSSKVAVTVQ-ELFQ 195
Query: 653 SPILSFFLPWHQ----IIFCLVMGFLFAVDTGLYFSVRKVLRSSKE-DW 784
+P+L P ++ C DT L F+ K R + DW
Sbjct: 196 TPVLRTLSPQEARGRVVLRCETRLHPQKRDTPLQFAFYKYSRPVRRFDW 244
>ref|NP_899045.3| Fc receptor-like protein 5 isoform a [Mus musculus].
Length = 596
Score = 76.3 bits (186), Expect = 6e-14
Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 5/189 (2%)
Frame = +2
Query: 113 GTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSI 292
G H E +SVV L PPW + VTL C T+W + + I
Sbjct: 26 GQH-EAAQQSVVSLQPPWTTFFRGEVVTLTCYRFGFSVPQKTKWYQKRKTVKQTPGALVI 84
Query: 293 TDAT--VGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNI 466
T V SGEY C+ S + +E + +L+LQAP V EG+S+ LRC+ K I
Sbjct: 85 KAHTLKVHESGEYWCQADSLLPSMHVNVEFSEDFLVLQAPP-AVFEGDSVVLRCYAKKGI 143
Query: 467 TIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIK---NYNLSSEAVKVTVQ 637
+ + ++++G Q+ E++I A LKD G Y C K +S V V VQ
Sbjct: 144 EAETLTFYKDGKALTLHPQSSEFYIHRANLKDNGQYKCTSKKKWSFGSLYTSNTVVVQVQ 203
Query: 638 GSKSPSPIL 664
P P+L
Sbjct: 204 -ELFPRPVL 211
>ref|NP_660123.1| Fc receptor-like A isoform 2 [Mus musculus].
Length = 352
Score = 57.0 bits (136), Expect = 4e-08
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Frame = +2
Query: 173 LLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQ 352
LL S TLKC+G S + + + D + S E +
Sbjct: 25 LLAASSETLKCEGLVSTEQGSCQ-------AAAEEDEGDEDDGDMTQSSEAGFQFKGYTF 77
Query: 353 SDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFE 532
S P L V WL+LQ P ++ EG+++ L C W++ + +V +++ G E
Sbjct: 78 SKPFHLSVSYDWLILQGPATLIFEGDTLVLHCRAWQDWPLTQVIFYREGSALGPPGPKSE 137
Query: 533 YHIPNATLKDGGSYFCRGIIKNYNLSS----EAVKVTVQ 637
+ I DGG Y C GI ++ S V +TVQ
Sbjct: 138 FSITMVQKSDGGHYHCSGIFRSPGPGSREAASPVAITVQ 176
>ref|NP_001153687.1| Fc receptor-like A isoform 1 [Mus musculus].
Length = 353
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +2
Query: 353 SDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFE 532
S P L V WL+LQ P ++ EG+++ L C W++ + +V +++ G E
Sbjct: 79 SKPFHLSVSYDWLILQGPATLIFEGDTLVLHCRAWQDWPLTQVIFYREGSALGPPGPKSE 138
Query: 533 YHIPNATLKDGGSYFCRGIIKNYNLSS----EAVKVTVQ 637
+ I DGG Y C GI ++ S V +TVQ
Sbjct: 139 FSITMVQKSDGGHYHCSGIFRSPGPGSREAASPVAITVQ 177
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,947,689
Number of extensions: 1050460
Number of successful extensions: 3740
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3683
Number of HSP's successfully gapped: 13
Length of query: 505
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 399
Effective length of database: 12,433,743
Effective search space: 4961063457
Effective search space used: 4961063457
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013149
(1517 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121067.1| low affinity immunoglobulin gamma Fc region ... 306 3e-83
Alignment gi|NP_001121065.1| low affinity immunoglobulin gamma Fc region ... 306 3e-83
Alignment gi|NP_000560.5| low affinity immunoglobulin gamma Fc region rec... 306 3e-83
Alignment gi|NP_001121068.1| low affinity immunoglobulin gamma Fc region ... 300 2e-81
Alignment gi|NP_001121064.1| low affinity immunoglobulin gamma Fc region ... 300 2e-81
Alignment gi|NP_000561.3| low affinity immunoglobulin gamma Fc region rec... 276 4e-74
Alignment gi|NP_001017986.1| high affinity immunoglobulin gamma Fc recept... 181 2e-45
Alignment gi|NP_001129691.1| low affinity immunoglobulin gamma Fc region ... 167 3e-41
Alignment gi|NP_067674.2| low affinity immunoglobulin gamma Fc region rec... 163 5e-40
Alignment gi|NP_001002275.1| low affinity immunoglobulin gamma Fc region ... 157 3e-38
>ref|NP_001121067.1| low affinity immunoglobulin gamma Fc region receptor III-A isoform
c precursor [Homo sapiens].
Length = 254
Score = 306 bits (785), Expect = 3e-83
Identities = 147/253 (58%), Positives = 182/253 (71%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ VSAG ED PK+VV L+P W R+LEKDSVTLKCQGAY P D+ST+W
Sbjct: 1 MWQLLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQW 60
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
N +LIS++ASSY I ATV +SGEY C+T LS SDP++LEV+ GWLLLQAPRWV +E
Sbjct: 61 FHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE 120
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
+ I LRCH+WKN + KV Y QNG G+K+ H N +++IP ATLKD GSYFCRG+ + N
Sbjct: 121 EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLFGSKN 180
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 784
+SSE V +T+ + S I SFF P +Q+ FCLVM LFAVDTGLYFSV+ +RSS DW
Sbjct: 181 VSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIRSSTRDW 240
Query: 785 RNGKVTWSRDPQD 823
++ K W +DPQD
Sbjct: 241 KDHKFKWRKDPQD 253
>ref|NP_001121065.1| low affinity immunoglobulin gamma Fc region receptor III-A isoform
c precursor [Homo sapiens].
Length = 254
Score = 306 bits (785), Expect = 3e-83
Identities = 147/253 (58%), Positives = 182/253 (71%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ VSAG ED PK+VV L+P W R+LEKDSVTLKCQGAY P D+ST+W
Sbjct: 1 MWQLLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQW 60
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
N +LIS++ASSY I ATV +SGEY C+T LS SDP++LEV+ GWLLLQAPRWV +E
Sbjct: 61 FHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE 120
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
+ I LRCH+WKN + KV Y QNG G+K+ H N +++IP ATLKD GSYFCRG+ + N
Sbjct: 121 EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLFGSKN 180
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 784
+SSE V +T+ + S I SFF P +Q+ FCLVM LFAVDTGLYFSV+ +RSS DW
Sbjct: 181 VSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIRSSTRDW 240
Query: 785 RNGKVTWSRDPQD 823
++ K W +DPQD
Sbjct: 241 KDHKFKWRKDPQD 253
>ref|NP_000560.5| low affinity immunoglobulin gamma Fc region receptor III-A isoform
a precursor [Homo sapiens].
Length = 290
Score = 306 bits (785), Expect = 3e-83
Identities = 147/253 (58%), Positives = 182/253 (71%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ VSAG ED PK+VV L+P W R+LEKDSVTLKCQGAY P D+ST+W
Sbjct: 37 MWQLLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQW 96
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
N +LIS++ASSY I ATV +SGEY C+T LS SDP++LEV+ GWLLLQAPRWV +E
Sbjct: 97 FHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE 156
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
+ I LRCH+WKN + KV Y QNG G+K+ H N +++IP ATLKD GSYFCRG+ + N
Sbjct: 157 EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLFGSKN 216
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 784
+SSE V +T+ + S I SFF P +Q+ FCLVM LFAVDTGLYFSV+ +RSS DW
Sbjct: 217 VSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIRSSTRDW 276
Query: 785 RNGKVTWSRDPQD 823
++ K W +DPQD
Sbjct: 277 KDHKFKWRKDPQD 289
>ref|NP_001121068.1| low affinity immunoglobulin gamma Fc region receptor III-A isoform
d precursor [Homo sapiens].
Length = 253
Score = 300 bits (768), Expect = 2e-81
Identities = 146/253 (57%), Positives = 181/253 (71%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ VSAG D PK+VV L+P W R+LEKDSVTLKCQGAY P D+ST+W
Sbjct: 1 MWQLLLPTALLLLVSAGMRT-DLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQW 59
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
N +LIS++ASSY I ATV +SGEY C+T LS SDP++LEV+ GWLLLQAPRWV +E
Sbjct: 60 FHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE 119
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
+ I LRCH+WKN + KV Y QNG G+K+ H N +++IP ATLKD GSYFCRG+ + N
Sbjct: 120 EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLFGSKN 179
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 784
+SSE V +T+ + S I SFF P +Q+ FCLVM LFAVDTGLYFSV+ +RSS DW
Sbjct: 180 VSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIRSSTRDW 239
Query: 785 RNGKVTWSRDPQD 823
++ K W +DPQD
Sbjct: 240 KDHKFKWRKDPQD 252
>ref|NP_001121064.1| low affinity immunoglobulin gamma Fc region receptor III-A isoform
b precursor [Homo sapiens].
Length = 289
Score = 300 bits (768), Expect = 2e-81
Identities = 146/253 (57%), Positives = 181/253 (71%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ VSAG D PK+VV L+P W R+LEKDSVTLKCQGAY P D+ST+W
Sbjct: 37 MWQLLLPTALLLLVSAGMRT-DLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQW 95
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
N +LIS++ASSY I ATV +SGEY C+T LS SDP++LEV+ GWLLLQAPRWV +E
Sbjct: 96 FHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE 155
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
+ I LRCH+WKN + KV Y QNG G+K+ H N +++IP ATLKD GSYFCRG+ + N
Sbjct: 156 EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLFGSKN 215
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKEDW 784
+SSE V +T+ + S I SFF P +Q+ FCLVM LFAVDTGLYFSV+ +RSS DW
Sbjct: 216 VSSETVNITITQGLAVSTISSFFPPGYQVSFCLVMVLLFAVDTGLYFSVKTNIRSSTRDW 275
Query: 785 RNGKVTWSRDPQD 823
++ K W +DPQD
Sbjct: 276 KDHKFKWRKDPQD 288
>ref|NP_000561.3| low affinity immunoglobulin gamma Fc region receptor III-B
precursor [Homo sapiens].
Length = 233
Score = 276 bits (706), Expect = 4e-74
Identities = 134/230 (58%), Positives = 164/230 (71%)
Frame = +2
Query: 65 MWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEW 244
MWQ VSAG ED PK+VV L+P W +LEKDSVTLKCQGAY P D+ST+W
Sbjct: 1 MWQLLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQW 60
Query: 245 RWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQE 424
N LIS++ASSY I ATV +SGEY C+T LS SDP++LEV+ GWLLLQAPRWV +E
Sbjct: 61 FHNENLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKE 120
Query: 425 GESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYN 604
+ I LRCH+WKN + KV Y QNG +K+ H N ++HIP ATLKD GSYFCRG++ + N
Sbjct: 121 EDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKN 180
Query: 605 LSSEAVKVTVQGSKSPSPILSFFLPWHQIIFCLVMGFLFAVDTGLYFSVR 754
+SSE V +T+ + S I SF P +Q+ FCLVM LFAVDTGLYFSV+
Sbjct: 181 VSSETVNITITQGLAVSTISSFSPPGYQVSFCLVMVLLFAVDTGLYFSVK 230
>ref|NP_001017986.1| high affinity immunoglobulin gamma Fc receptor IB isoform a [Homo
sapiens].
Length = 280
Score = 181 bits (459), Expect = 2e-45
Identities = 86/217 (39%), Positives = 130/217 (59%)
Frame = +2
Query: 128 DPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYSITDATV 307
D K+V+ L PPW + ++++VTL C+ + PG ST+W NGT SY IT A+V
Sbjct: 18 DTTKAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASV 77
Query: 308 GNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNITIQKVQY 487
+SGEY C+ GLS +SDP++LE+++GWLLLQ V EGE + LRCH WK+ + V Y
Sbjct: 78 NDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFMEGEPLALRCHAWKDKLVYNVLY 137
Query: 488 FQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQGSKSPSPILS 667
++NG KF H N I + G+Y C G+ K+ S+ + TV+G + P+P+
Sbjct: 138 YRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISQYTVKGLQLPTPV-- 195
Query: 668 FFLPWHQIIFCLVMGFLFAVDTGLYFSVRKVLRSSKE 778
W ++F L +G +F V+T L+ ++RK L+ K+
Sbjct: 196 ----WFHVLFYLAVGIMFLVNTVLWVTIRKELKRKKK 228
>ref|NP_001129691.1| low affinity immunoglobulin gamma Fc region receptor II-a isoform 1
[Homo sapiens].
Length = 317
Score = 167 bits (422), Expect = 3e-41
Identities = 89/205 (43%), Positives = 116/205 (56%), Gaps = 4/205 (1%)
Frame = +2
Query: 62 SMWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTE 241
++W SA + A PPK+V+ L+PPW +L++DSVTL CQGA P DS +
Sbjct: 15 NLWLLQPLTVLLLLASADSQAAAPPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQ 74
Query: 242 WRWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQ 421
W NG LI A +SGEYTC+TG ++ SDP+ L V WL+LQ P Q
Sbjct: 75 WFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVLQTPHLEFQ 134
Query: 422 EGESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNY 601
EGE+I LRCH+WK+ + KV +FQNG +KFSH + + IP A G Y C G I
Sbjct: 135 EGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYT 194
Query: 602 NLSSEAVKVTVQ----GSKSPSPIL 664
SS+ V +TVQ GS SP I+
Sbjct: 195 LFSSKPVTITVQVPSMGSSSPMGII 219
>ref|NP_067674.2| low affinity immunoglobulin gamma Fc region receptor II-a isoform 2
[Homo sapiens].
Length = 316
Score = 163 bits (412), Expect = 5e-40
Identities = 89/205 (43%), Positives = 116/205 (56%), Gaps = 4/205 (1%)
Frame = +2
Query: 62 SMWQXXXXXXXXXXVSAGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTE 241
++W SA + A PPK+V+ L+PPW +L++DSVTL CQGA P DS +
Sbjct: 15 NLWLLQPLTVLLLLASADSQAA-PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQ 73
Query: 242 WRWNGTLISNKASSYSITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQ 421
W NG LI A +SGEYTC+TG ++ SDP+ L V WL+LQ P Q
Sbjct: 74 WFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVLQTPHLEFQ 133
Query: 422 EGESIRLRCHTWKNITIQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNY 601
EGE+I LRCH+WK+ + KV +FQNG +KFSH + + IP A G Y C G I
Sbjct: 134 EGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYT 193
Query: 602 NLSSEAVKVTVQ----GSKSPSPIL 664
SS+ V +TVQ GS SP I+
Sbjct: 194 LFSSKPVTITVQVPSMGSSSPMGII 218
>ref|NP_001002275.1| low affinity immunoglobulin gamma Fc region receptor II-b isoform 4
precursor [Homo sapiens].
Length = 309
Score = 157 bits (396), Expect = 3e-38
Identities = 85/186 (45%), Positives = 110/186 (59%), Gaps = 1/186 (0%)
Frame = +2
Query: 110 AGTHAEDPPKSVVILDPPWDRLLEKDSVTLKCQGAYPPGDDSTEWRWNGTLISNKASSYS 289
AGT A PPK+V+ L+P W +L++DSVTL C+G + P DS +W NG LI
Sbjct: 41 AGTPA--PPKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQPSY 98
Query: 290 ITDATVGNSGEYTCKTGLSAQSDPLRLEVYKGWLLLQAPRWVVQEGESIRLRCHTWKNIT 469
A +SGEYTC+TG ++ SDP+ L V WL+LQ P QEGE+I LRCH+WK+
Sbjct: 99 RFKANNNDSGEYTCQTGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKP 158
Query: 470 IQKVQYFQNGMGKKFSHQNFEYHIPNATLKDGGSYFCRGIIKNYNLSSEAVKVTVQG-SK 646
+ KV +FQNG KKFS + + IP A G Y C G I SS+ V +TVQ S
Sbjct: 159 LVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPSS 218
Query: 647 SPSPIL 664
SP I+
Sbjct: 219 SPMGII 224
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,305,925
Number of extensions: 1243325
Number of successful extensions: 4494
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4400
Number of HSP's successfully gapped: 28
Length of query: 505
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 398
Effective length of database: 14,770,016
Effective search space: 5878466368
Effective search space used: 5878466368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013149
(1517 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894978.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 426 e-116
gb|GL893101.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 385 e-104
gb|GL896217.1| Sus scrofa unplaced genomic scaffold chrU_scaffold58 242 5e-61
gb|GL892834.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 135 8e-29
>gb|GL894978.1| Sus scrofa unplaced genomic scaffold chrU_scaffold359
Length = 752
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 637 aggttcaaaaagtccatcacctatcctatcattctttctaccttggcaccaaatcatttt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aggttcaaaaagtccatcacctatcctatcattctttctaccttggcaccaaatcatttt 156
Query: 697 ctgcctggtgatgggattcctgtttgcagtggacacggggctgtatttttctgtgcggaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ctgcctggtgatgggattcctgtttgcagtggacacggggctgtatttttctgtgcggaa 96
Query: 757 agtacttcgaagctcaaaggaggactggaggaatggcaaagtcacatggagccgggaccc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 agtacttcgaagctcaaaggaggactggaggaatggcaaagtcacatggagccgggaccc 36
Query: 817 gcaggacaaaggaggataacaaaagcagcagcatc 851
|||||||||||||||||||||||||||||||||||
Sbjct: 35 gcaggacaaaggaggataacaaaagcagcagcatc 1
>gb|GL893101.1| Sus scrofa unplaced genomic scaffold chrU_scaffold190
Length = 233
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 447 gccacacctggaagaacattacaatacaaaaggtccaatatttccagaatggcatgggga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gccacacctggaagaacattacaatacaaaaggtccaatatttccagaatggcatgggga 174
Query: 507 agaagttttctcatcagaattttgaataccacattccaaatgcaacactcaaagatggtg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 agaagttttctcatcagaattttgaataccacattccaaatgcaacactcaaagatggtg 114
Query: 567 gctcctacttctgcagaggaattatcaagaattacaatttgtcttcggaggctgtgaaag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gctcctacttctgcagaggaattatcaagaattacaatttgtcttcggaggctgtgaaag 54
Query: 627 tcactgttcaaggt 640
||||||||||||||
Sbjct: 53 tcactgttcaaggt 40
>gb|GL896217.1| Sus scrofa unplaced genomic scaffold chrU_scaffold58
Length = 122
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 162 catgggaccggttgcttgagaaggattctgtgactctgaagtgccagggggcctaccctc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 catgggaccggttgcttgagaaggattctgtgactctgaagtgccagggggcctaccctc 63
Query: 222 ctggagacgattccacagagtggaggtggaatgggaccctcatctcaaacaaggcctcca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctggagacgattccacagagtggaggtggaatgggaccctcatctcaaacaaggcctcca 3
Query: 282 gc 283
||
Sbjct: 2 gc 1
>gb|GL892834.1| Sus scrofa unplaced genomic scaffold chrU_scaffold166
Length = 203
Score = 135 bits (68), Expect = 8e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 317 ggagaatacacgtgtaagacaggcctctctgcacagagtgacccattgcgactagaagtc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagaatacacgtgtaagacaggcctctctgcacagagtgacccattgcgactagaagtc 60
Query: 377 tacaaggg 384
||||||||
Sbjct: 61 tacaaggg 68
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,987,095
Number of extensions: 593
Number of successful extensions: 593
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 4
Length of query: 1517
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1496
Effective length of database: 2,808,413,156
Effective search space: 4201386081376
Effective search space used: 4201386081376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)