Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013150
(1033 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091847.1| EP300-interacting inhibitor of differentiati... 232 4e-61
Alignment gi|XP_002686913.1| PREDICTED: EP300 interacting inhibitor of di... 229 3e-60
Alignment gi|NP_001071517.1| EP300-interacting inhibitor of differentiati... 55 1e-07
>ref|NP_001091847.1| EP300-interacting inhibitor of differentiation 1 [Bos taurus].
Length = 191
Score = 232 bits (592), Expect = 4e-61
Identities = 127/191 (66%), Positives = 132/191 (69%)
Frame = +1
Query: 70 MSEMHELSELYEESNDLQMDVMPGESDLPQMEVXXXXXXXXXXXXXXXXXXQLXXXXXXX 249
MSEM+ELSELYEES DLQMDV+PGESDLP MEV QL
Sbjct: 1 MSEMNELSELYEESTDLQMDVIPGESDLPHMEVGGGSRELSPNPSRAGAPPQLEEEGPME 60
Query: 250 XXVAQPMAEPQGQRGLANRPNPGERPGQIAXXXXXXXXXXXXXXXXXXXXXXXXXXQLSG 429
AQPMAEPQG RGLA+RP+PGE+PGQIA LSG
Sbjct: 61 EEAAQPMAEPQGPRGLASRPSPGEQPGQIAGPDFESEDEGEEFDDWEDDYDYPEEEPLSG 120
Query: 430 AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 609
AGYRVSAALEEANKMFLRTSRAREAAL GGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE
Sbjct: 121 AGYRVSAALEEANKMFLRTSRAREAALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 180
Query: 610 ELGCDEIIDRE 642
ELGCDEIIDRE
Sbjct: 181 ELGCDEIIDRE 191
>ref|XP_002686913.1| PREDICTED: EP300 interacting inhibitor of differentiation 1-like
[Bos taurus].
Length = 191
Score = 229 bits (584), Expect = 3e-60
Identities = 125/191 (65%), Positives = 132/191 (69%)
Frame = +1
Query: 70 MSEMHELSELYEESNDLQMDVMPGESDLPQMEVXXXXXXXXXXXXXXXXXXQLXXXXXXX 249
MSEM+ELSELYEE+ DLQMDV+PGESDLP MEV QL
Sbjct: 1 MSEMNELSELYEENTDLQMDVIPGESDLPHMEVGGGSRELSPNPSRAGAPPQLEEEGPME 60
Query: 250 XXVAQPMAEPQGQRGLANRPNPGERPGQIAXXXXXXXXXXXXXXXXXXXXXXXXXXQLSG 429
AQPMAEPQG RGLA+RP+PGE+PGQIA LSG
Sbjct: 61 EEAAQPMAEPQGPRGLASRPSPGEQPGQIAGPDFESEDEGEEFDDWEDDYDYPEEEPLSG 120
Query: 430 AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 609
AGYRVSAALEEA+KMFLRTSRAREAAL GGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE
Sbjct: 121 AGYRVSAALEEASKMFLRTSRAREAALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 180
Query: 610 ELGCDEIIDRE 642
ELGCDEIIDRE
Sbjct: 181 ELGCDEIIDRE 191
>ref|NP_001071517.1| EP300-interacting inhibitor of differentiation 2 [Bos taurus].
Length = 219
Score = 54.7 bits (130), Expect = 1e-07
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Frame = +1
Query: 256 VAQPMAEPQGQRGLANRPN--PGERPGQIAXXXXXXXXXXXXXXXXXXXXXXXXXXQLSG 429
VA+ +AEP + G RP PG PG A
Sbjct: 90 VARLLAEPAEEEGPEGRPRSRPGNGPGLAALPYLRLRHPLGVLGINYQQFLRHYLEHYPI 149
Query: 430 AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 609
A R+ LE + F+ RAREAA +Q + ++ FD L F L + ++N L E
Sbjct: 150 APGRIQE-LEGRRRRFVEACRAREAAFDAEYQRNPQRMDFDILTFSITLTASEIINPLIE 208
Query: 610 ELGCDEIIDRE 642
ELGCD+ I RE
Sbjct: 209 ELGCDKFISRE 219
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,432,089
Number of extensions: 842829
Number of successful extensions: 4489
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4409
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013150
(1033 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850599.1| PREDICTED: similar to CREBBP/EP300 inhibitor 1 ... 239 3e-63
Alignment gi|XP_848585.1| PREDICTED: similar to CREBBP/EP300 inhibitor 1 ... 162 5e-40
Alignment gi|XP_861823.1| PREDICTED: similar to CREBBP/EP300 inhibitor 1 ... 65 8e-11
Alignment gi|XP_855345.1| PREDICTED: similar to CREBBP/EP300 inhibitor 2 ... 55 8e-08
>ref|XP_850599.1| PREDICTED: similar to CREBBP/EP300 inhibitor 1 isoform 1 [Canis
familiaris].
Length = 191
Score = 239 bits (610), Expect = 3e-63
Identities = 129/191 (67%), Positives = 135/191 (70%)
Frame = +1
Query: 70 MSEMHELSELYEESNDLQMDVMPGESDLPQMEVXXXXXXXXXXXXXXXXXXQLXXXXXXX 249
MSEM+ELSELYEESNDLQMDVMPGE DLPQMEV QL
Sbjct: 1 MSEMNELSELYEESNDLQMDVMPGEGDLPQMEVGGGSREPSPNPSRHGAQPQLEEEGPME 60
Query: 250 XXVAQPMAEPQGQRGLANRPNPGERPGQIAXXXXXXXXXXXXXXXXXXXXXXXXXXQLSG 429
AQPMAEPQG+RGLA+RP+PGE+PGQ+A QLSG
Sbjct: 61 EEAAQPMAEPQGERGLAHRPSPGEQPGQLAGPDFESEDEGEEFDDWEDDYDYPEEEQLSG 120
Query: 430 AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 609
AGYRVSAALEEANKMFLRTSRAREAAL GGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE
Sbjct: 121 AGYRVSAALEEANKMFLRTSRAREAALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 180
Query: 610 ELGCDEIIDRE 642
ELGCDEIIDRE
Sbjct: 181 ELGCDEIIDRE 191
>ref|XP_848585.1| PREDICTED: similar to CREBBP/EP300 inhibitor 1 [Canis familiaris].
Length = 153
Score = 162 bits (410), Expect = 5e-40
Identities = 90/127 (70%), Positives = 94/127 (74%)
Frame = +1
Query: 259 AQPMAEPQGQRGLANRPNPGERPGQIAXXXXXXXXXXXXXXXXXXXXXXXXXXQLSGAGY 438
A PMAEPQG RGLA+RP GE+PGQ+A QLSGAGY
Sbjct: 34 ALPMAEPQGDRGLAHRP--GEQPGQLASPDFKSEDDYDYLEEE----------QLSGAGY 81
Query: 439 RVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTEELG 618
RVSA LEEANKMFLRTSRAREAAL GGFQMHYEKTPFDQLAFIEELFSLMVVNRLT+EL
Sbjct: 82 RVSAVLEEANKMFLRTSRAREAALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTKELS 141
Query: 619 CDEIIDR 639
CDEIIDR
Sbjct: 142 CDEIIDR 148
>ref|XP_861823.1| PREDICTED: similar to CREBBP/EP300 inhibitor 1 isoform 2 [Canis
familiaris].
Length = 37
Score = 65.5 bits (158), Expect = 8e-11
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +1
Query: 70 MSEMHELSELYEESNDLQMDVMPGESDLPQMEV 168
MSEM+ELSELYEESNDLQMDVMPGE DLPQMEV
Sbjct: 1 MSEMNELSELYEESNDLQMDVMPGEGDLPQMEV 33
>ref|XP_855345.1| PREDICTED: similar to CREBBP/EP300 inhibitor 2 [Canis familiaris].
Length = 231
Score = 55.5 bits (132), Expect = 8e-08
Identities = 54/202 (26%), Positives = 70/202 (34%)
Frame = +1
Query: 37 KRLARGLADCTMSEMHELSELYEESNDLQMDVMPGESDLPQMEVXXXXXXXXXXXXXXXX 216
+ LA A S E+SEL +S+ Q D G D+ Q EV
Sbjct: 43 RALAVAAAAAERSPRSEMSELPADSSVRQTDAANGPRDVGQAEVGGGRREPAPARPAEPG 102
Query: 217 XXQLXXXXXXXXXVAQPMAEPQGQRGLANRPNPGERPGQIAXXXXXXXXXXXXXXXXXXX 396
A+P RP P PG A
Sbjct: 103 EGAAAAAAAAEGAQARP------------RPRPANGPGLAALPYLRLRHPLSVLGINYQQ 150
Query: 397 XXXXXXXQLSGAGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEEL 576
A R+ LEE + F+ RAREAA +Q + ++ FD L F L
Sbjct: 151 FLRHYLEHYPIAPGRIQE-LEERRRRFVEACRAREAAFDAEYQRNPQRMDFDILTFTIAL 209
Query: 577 FSLMVVNRLTEELGCDEIIDRE 642
+ V+N L EELGCD+ I RE
Sbjct: 210 TASEVINPLIEELGCDKFISRE 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,102,368
Number of extensions: 874074
Number of successful extensions: 4627
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4573
Number of HSP's successfully gapped: 4
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013150
(1033 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928796.1| PREDICTED: EP300-interacting inhibitor of di... 255 3e-68
Alignment gi|XP_003127179.1| PREDICTED: EP300-interacting inhibitor of di... 54 1e-07
Alignment gi|XP_003355957.1| PREDICTED: EP300-interacting inhibitor of di... 54 1e-07
>ref|XP_001928796.1| PREDICTED: EP300-interacting inhibitor of differentiation 1-like
[Sus scrofa].
Length = 191
Score = 255 bits (651), Expect = 3e-68
Identities = 138/191 (72%), Positives = 138/191 (72%)
Frame = +1
Query: 70 MSEMHELSELYEESNDLQMDVMPGESDLPQMEVXXXXXXXXXXXXXXXXXXQLXXXXXXX 249
MSEMHELSELYEESNDLQMDVMPGESDLPQMEV QL
Sbjct: 1 MSEMHELSELYEESNDLQMDVMPGESDLPQMEVGSGSRGPSPNPSRSGAPPQLEEEGPME 60
Query: 250 XXVAQPMAEPQGQRGLANRPNPGERPGQIAXXXXXXXXXXXXXXXXXXXXXXXXXXQLSG 429
VAQPMAEPQGQRGLANRPNPGERPGQIA QLSG
Sbjct: 61 EEVAQPMAEPQGQRGLANRPNPGERPGQIAGPDFESEDEGEEFDDWEDDYDYPEEEQLSG 120
Query: 430 AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 609
AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE
Sbjct: 121 AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 180
Query: 610 ELGCDEIIDRE 642
ELGCDEIIDRE
Sbjct: 181 ELGCDEIIDRE 191
>ref|XP_003127179.1| PREDICTED: EP300-interacting inhibitor of differentiation 2-like
[Sus scrofa].
Length = 206
Score = 54.3 bits (129), Expect = 1e-07
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Frame = +1
Query: 256 VAQPMAEPQGQRGLANRPN--PGERPGQIAXXXXXXXXXXXXXXXXXXXXXXXXXXQLSG 429
VA+ +AEP + G RP PG PG A
Sbjct: 77 VARLLAEPAEEEGPEGRPRSRPGNGPGLNALPYLRLRHPLGVLGINYQQFLRHYLEHYPI 136
Query: 430 AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 609
A R+ LE + F+ RAREAA +Q + ++ FD L F L + ++N L E
Sbjct: 137 APGRIQE-LEGRRRRFVEACRAREAAFDAEYQRNPQRMDFDVLTFTVGLTASEIINPLIE 195
Query: 610 ELGCDEIIDRE 642
ELGCD+ I RE
Sbjct: 196 ELGCDKYISRE 206
>ref|XP_003355957.1| PREDICTED: EP300-interacting inhibitor of differentiation 2-like
[Sus scrofa].
Length = 206
Score = 54.3 bits (129), Expect = 1e-07
Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Frame = +1
Query: 256 VAQPMAEPQGQRGLANRPN--PGERPGQIAXXXXXXXXXXXXXXXXXXXXXXXXXXQLSG 429
VA+ +AEP + G RP PG PG A
Sbjct: 77 VARLLAEPAEEEGPEGRPRSRPGNGPGLNALPYLRLRHPLGVLGINYQQFLRHYLEHYPI 136
Query: 430 AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 609
A R+ LE + F+ RAREAA +Q + ++ FD L F L + ++N L E
Sbjct: 137 APGRIQE-LEGRRRRFVEACRAREAAFDAEYQRNPQRMDFDVLTFTVGLTASEIINPLIE 195
Query: 610 ELGCDEIIDRE 642
ELGCD+ I RE
Sbjct: 196 ELGCDKYISRE 206
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,215,122
Number of extensions: 544961
Number of successful extensions: 2800
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2751
Number of HSP's successfully gapped: 3
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013150
(1033 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079889.2| EP300-interacting inhibitor of differentiation ... 115 7e-26
Alignment gi|NP_940817.1| EP300-interacting inhibitor of differentiation ... 50 4e-06
>ref|NP_079889.2| EP300-interacting inhibitor of differentiation 1 [Mus musculus].
Length = 159
Score = 115 bits (287), Expect = 7e-26
Identities = 61/73 (83%), Positives = 66/73 (90%)
Frame = +1
Query: 424 SGAGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRL 603
SGA +RVSAALEEANK+FLRT+RA +A L GGFQ EK+PFDQLAFIEELFSLMVVNRL
Sbjct: 88 SGAMHRVSAALEEANKVFLRTARAGDA-LDGGFQARCEKSPFDQLAFIEELFSLMVVNRL 146
Query: 604 TEELGCDEIIDRE 642
TEELGCDEIIDRE
Sbjct: 147 TEELGCDEIIDRE 159
>ref|NP_940817.1| EP300-interacting inhibitor of differentiation 2 [Mus musculus].
Length = 236
Score = 49.7 bits (117), Expect = 4e-06
Identities = 27/63 (42%), Positives = 36/63 (57%)
Frame = +1
Query: 454 LEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTEELGCDEII 633
LEE + F+ RAREAA + + ++ FD L F L + V+N L EELGCD+ I
Sbjct: 174 LEERRRRFVEACRAREAAFDIEYLRNPQRVDFDILTFTIALTASEVINPLIEELGCDKFI 233
Query: 634 DRE 642
RE
Sbjct: 234 HRE 236
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,683,127
Number of extensions: 709400
Number of successful extensions: 3461
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3378
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013150
(1033 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055150.1| EP300-interacting inhibitor of differentiation ... 209 3e-54
Alignment gi|NP_694964.3| EP300-interacting inhibitor of differentiation ... 52 1e-06
>ref|NP_055150.1| EP300-interacting inhibitor of differentiation 1 [Homo sapiens].
Length = 187
Score = 209 bits (532), Expect = 3e-54
Identities = 120/191 (62%), Positives = 126/191 (65%)
Frame = +1
Query: 70 MSEMHELSELYEESNDLQMDVMPGESDLPQMEVXXXXXXXXXXXXXXXXXXQLXXXXXXX 249
MSEM ELSELYEES+DLQMDVMPGE DLPQMEV QL
Sbjct: 1 MSEMAELSELYEESSDLQMDVMPGEGDLPQMEVGSGSRELSLRPSRSGAQ-QLEEEGPME 59
Query: 250 XXVAQPMAEPQGQRGLANRPNPGERPGQIAXXXXXXXXXXXXXXXXXXXXXXXXXXQLSG 429
AQPMA P+G+R LAN PN GE+PGQ+A QLSG
Sbjct: 60 EEEAQPMAAPEGKRSLANGPNAGEQPGQVAGADFESEDEGEEFDDWEDDYDYPEEEQLSG 119
Query: 430 AGYRVSAALEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 609
AGYRVSAALEEA+KMFLRT RE AL GGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE
Sbjct: 120 AGYRVSAALEEADKMFLRT---REPALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTE 176
Query: 610 ELGCDEIIDRE 642
ELGCDEIIDRE
Sbjct: 177 ELGCDEIIDRE 187
>ref|NP_694964.3| EP300-interacting inhibitor of differentiation 2 [Homo sapiens].
Length = 236
Score = 51.6 bits (122), Expect = 1e-06
Identities = 27/63 (42%), Positives = 36/63 (57%)
Frame = +1
Query: 454 LEEANKMFLRTSRAREAALGGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTEELGCDEII 633
LEE + F+ RAREAA +Q + + D L F L + V+N L EELGCD+ I
Sbjct: 174 LEERRRRFVEACRAREAAFDAEYQRNPHRVDLDILTFTIALTASEVINPLIEELGCDKFI 233
Query: 634 DRE 642
+RE
Sbjct: 234 NRE 236
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,205,391
Number of extensions: 852026
Number of successful extensions: 4573
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4499
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013150
(1033 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1848 0.0
gb|GL895275.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 88 1e-14
>Sscrofa_Chr01
|| Length = 315321322
Score = 1848 bits (932), Expect = 0.0
Identities = 991/1016 (97%), Gaps = 1/1016 (0%)
Strand = Plus / Minus
Query: 2 acaaccgcgcggccgcgtagccgagatcttgcagaaaacgcttggcgagaggtctagccg 61
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 136637124 acaaccgcgcggccgcgtagcccagatcttgcagaaaacgcttggcgagaggtctagccg 136637065
Query: 62 attgcacaatgtcggaaatgcacgagctgtccgagctttatgaggagagcaatgacctgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136637064 attgcacaatgtcggaaatgcacgagctgtccgagctttatgaggagagcaatgacctgc 136637005
Query: 122 agatggatgtgatgcccggcgagagcgaccttccgcaaatggaggtaggcagcgggagcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136637004 agatggatgtgatgcccggcgagagcgaccttccgcaaatggaggtaggcagcgggagcc 136636945
Query: 182 gggggccgtccccgaacccctcccgctccggggccccgccacagctggaggaggaaggcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636944 gggggccgtccccgaacccctcccgctccggggccccgccacagctggaggaggaaggcc 136636885
Query: 242 caatggaggaggaggtggcccagccaatggcggagccgcaggggcagcgaggcctcgcta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636884 caatggaggaggaggtggcccagccaatggcggagccgcaggggcagcgaggcctcgcta 136636825
Query: 302 accggcccaaccctggggagcgcccgggccagatcgcgggccctgatttcgagagcgagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636824 accggcccaaccctggggagcgcccgggccagatcgcgggccctgatttcgagagcgagg 136636765
Query: 362 acgagggcgaggaatttgatgactgggaggacgactacgactatccggaagaggagcagc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636764 acgagggcgaggaatttgatgactgggaggacgactacgactatccggaagaggagcagc 136636705
Query: 422 tgagtggtgcgggctacagagtctcagcggccctggaagaagccaacaagatgtttctga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636704 tgagtggtgcgggctacagagtctcagcggccctggaagaagccaacaagatgtttctga 136636645
Query: 482 ggacctccagagcgagagaagcagctctggggggcggatttcagatgcattatgagaaga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636644 ggacctccagagcgagagaagcagctctggggggcggatttcagatgcattatgagaaga 136636585
Query: 542 ccccgttcgatcagttggcttttatcgaggagcttttttcacttatggttgtcaatcgtc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636584 ccccgttcgatcagttggcttttatcgaggagcttttttcacttatggttgtcaatcgtc 136636525
Query: 602 tgaccgaagaactcggctgtgatgagattattgatagagagtagtatgctgtgaagagag 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636524 tgaccgaagaactcggctgtgatgagattattgatagagagtagtatgctgtgaagagag 136636465
Query: 662 gaggaaactacttgaggagagacccaacaacattccagtctcttgggttcattccgaata 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636464 gaggaaactacttgaggagagacccaacaacattccagtctcttgggttcattccgaata 136636405
Query: 722 gttccgtgccaatgaaacacttgatccaaaagaaaaaatnnnnnnnnnnnncagtgtaaa 781
||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 136636404 gttccgtgccaatgaaacacttgatccaaaagaaaaaatggggggggggggcagtgtaga 136636345
Query: 782 ctaggaaagtgacttcacagttatgggaaaggaagaaaattgttaaaggaaaaggatctc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636344 ctaggaaagtgacttcacagttatgggaaaggaagaaaattgttaaaggaaaaggatctc 136636285
Query: 842 agtactgttgaaacctgttttcaagaatgtcgtgaaacacttgtggctttgactctgtta 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136636284 agtactgttgaaacctgttttcaagaatgtcgtgaaacacttgtggctttgactctgtta 136636225
Query: 902 ctgatctaaattaatttccttgc-tttgggaaagtatctttcacatttccggatggcttt 960
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 136636224 ctgatctagattaatttccttgcatttgggaaagtatctttcacatttccggatggcttt 136636165
Query: 961 gcnnnnnnnnccaagacacatggccggtacaagagcccactgatgttaatcttatg 1016
|| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 136636164 gcaagaaaaaccaagacacatggccggtacaagagcccactgatgttaatcatatg 136636109
>gb|GL895275.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3857
Length = 67182
Score = 87.7 bits (44), Expect = 1e-14
Identities = 173/213 (81%), Gaps = 6/213 (2%)
Strand = Plus / Minus
Query: 365 agggcgaggaatttgatgactgggaggacgactacgactatccggaagaggag---cagc 421
|||||||||||||||||||||||||||| |||||||||| | |||||||||| ||||
Sbjct: 29410 agggcgaggaatttgatgactgggaggatgactacgactccctggaagaggaggaacagc 29351
Query: 422 tgagtggtgcgggctacagagtctcagcggccctggaagaagccaacaagatgtttctga 481
||||| |||| || |||| |||| || || | |||| ||||| ||||||||||
Sbjct: 29350 tgagttgtgcatctta--gagtaccagcagctcttgggaaagctaacaaaatgtttctga 29293
Query: 482 ggacctccagagcgagagaagcagctctggggggcggatttcagatgcattatgagaaga 541
| |||||||||| ||| |||||||||| | ||| ||||||||| ||| ||||||| |
Sbjct: 29292 gaacctccagagaaagaaaagcagctctagatggcaaatttcagatccatgatgagaa-a 29234
Query: 542 ccccgttcgatcagttggcttttatcgaggagc 574
|| ||| |||||||||||||||||||| ||||
Sbjct: 29233 ccttgtttgatcagttggcttttatcgaagagc 29201
Score = 67.9 bits (34), Expect = 1e-08
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 792 gacttcacagttatgggaaaggaagaaaattgttaaaggaaaaggatctcagtactgttg 851
|||| |||||||||| |||||||||||| | || || |||||||| | ||||||||||
Sbjct: 29012 gactgcacagttatgaaaaaggaagaaaaattttgaaagaaaaggagtttagtactgttg 28953
Query: 852 aaacctgttttcaa 865
||||||||||||||
Sbjct: 28952 aaacctgttttcaa 28939
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,597,494
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 6
Length of query: 1033
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1012
Effective length of database: 2,808,413,156
Effective search space: 2842114113872
Effective search space used: 2842114113872
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)