Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013154
(1133 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106716.1| TRAF3 interacting protein 3 isoform 1 [Bos t... 474 e-134
Alignment gi|NP_001019647.2| TRAF3 interacting protein 3 isoform 2 [Bos t... 328 4e-90
Alignment gi|XP_002697041.1| PREDICTED: sarcolemma associated protein [Bo... 100 2e-21
Alignment gi|XP_001788179.1| PREDICTED: sarcolemma associated protein [Bo... 100 2e-21
Alignment gi|XP_002687260.1| PREDICTED: Early endosome antigen 1-like [Bo... 59 6e-09
Alignment gi|XP_594411.5| PREDICTED: early endosome antigen 1, 162kD [Bos... 59 6e-09
Alignment gi|XP_002698546.1| PREDICTED: coiled-coil domain containing 147... 57 4e-08
Alignment gi|XP_617064.4| PREDICTED: coiled-coil domain containing 147-li... 57 4e-08
Alignment gi|XP_002685844.1| PREDICTED: ciliary rootlet coiled-coil, root... 54 3e-07
Alignment gi|XP_002703811.1| PREDICTED: ciliary rootlet coiled-coil, root... 54 3e-07
>ref|NP_001106716.1| TRAF3 interacting protein 3 isoform 1 [Bos taurus].
Length = 554
Score = 474 bits (1220), Expect = e-134
Identities = 244/294 (82%), Positives = 258/294 (87%), Gaps = 1/294 (0%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
+GQLNEDKLKGKLRSLENQLY CTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEE
Sbjct: 236 KGQLNEDKLKGKLRSLENQLYACTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEE 295
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
KMSAEQQLQSTQRSLALAEQKCEEW+SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA
Sbjct: 296 KMSAEQQLQSTQRSLALAEQKCEEWKSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 355
Query: 447 DSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVTKV 626
DSRD QMNQALRLLE+EHQELQA+I LQ DRDLCSSDTQHLQDQL++SEEEKLALVTKV
Sbjct: 356 DSRDSQMNQALRLLESEHQELQARIECLQEDRDLCSSDTQHLQDQLKRSEEEKLALVTKV 415
Query: 627 XXXXXXXXXXXXXXXXXXKRLTKKDQALE-WSPKPSQNEVEPEGPGKEKDWDFRDQLQEK 803
K LTKKDQAL SP+PS NEVEPEGPGKE+D DFRD+LQ+K
Sbjct: 416 QQLQSLLQNQSLQLQKQEKLLTKKDQALPVRSPEPSHNEVEPEGPGKEQDLDFRDELQKK 475
Query: 804 TLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELSLGQRPPPTRQCGRW 965
TLQLLAKEKECR+L SELDNLSDEYLSCLRKLQ CREELS Q+PPP RQCGRW
Sbjct: 476 TLQLLAKEKECRELLSELDNLSDEYLSCLRKLQHCREELSKSQQPPPRRQCGRW 529
>ref|NP_001019647.2| TRAF3 interacting protein 3 isoform 2 [Bos taurus].
Length = 448
Score = 328 bits (842), Expect = 4e-90
Identities = 171/208 (82%), Positives = 180/208 (86%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
+GQLNEDKLKGKLRSLENQLY CTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEE
Sbjct: 236 KGQLNEDKLKGKLRSLENQLYACTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEE 295
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
KMSAEQQLQSTQRSLALAEQKCEEW+SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA
Sbjct: 296 KMSAEQQLQSTQRSLALAEQKCEEWKSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 355
Query: 447 DSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVTKV 626
DSRD QMNQALRLLE+EHQELQA+I LQ DRDLCSSDTQHLQDQL++SEEEKLALVTKV
Sbjct: 356 DSRDSQMNQALRLLESEHQELQARIECLQEDRDLCSSDTQHLQDQLKRSEEEKLALVTKV 415
Query: 627 XXXXXXXXXXXXXXXXXXKRLTKKDQAL 710
K LTKK Q +
Sbjct: 416 QQLQSLLQNQSLQLQKQEKLLTKKGQQI 443
>ref|XP_002697041.1| PREDICTED: sarcolemma associated protein [Bos taurus].
Length = 811
Score = 100 bits (249), Expect = 2e-21
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 205 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 264
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 265 KIDVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKIA 324
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQL 584
+ + ++ Q + +E + QELQAKI LQ D D + LQ+ L
Sbjct: 325 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQEHL 381
>ref|XP_001788179.1| PREDICTED: sarcolemma associated protein [Bos taurus].
Length = 815
Score = 100 bits (249), Expect = 2e-21
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 209 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 268
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 269 KIDVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKIA 328
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQL 584
+ + ++ Q + +E + QELQAKI LQ D D + LQ+ L
Sbjct: 329 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQEHL 385
>ref|XP_002687260.1| PREDICTED: Early endosome antigen 1-like [Bos taurus].
Length = 1432
Score = 59.3 bits (142), Expect = 6e-09
Identities = 71/271 (26%), Positives = 122/271 (45%), Gaps = 25/271 (9%)
Frame = +3
Query: 120 KLRSLENQLYTCTQNYSPRGMKKVILEME-DQKHSYEQKAKESLQKVLEEKMSAEQQLQS 296
KL+S N+L QN + + KK + + ++KH+ E +K+S+Q L +K QQLQS
Sbjct: 313 KLKSSVNELTQKNQNLTEKLQKKELDYTQLEEKHNEECMSKKSIQASLHQKDLDCQQLQS 372
Query: 297 ----TQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQ 464
++ SL + + E + LKE+ + T+++ L+++ LQ + + D LQ
Sbjct: 373 RLSASETSLQRIQAELGEKGEATQKLKEELSEVETKYQHLKAEFKQLQQQREEKDQHGLQ 432
Query: 465 MNQAL-----RLLENEHQELQAKIARLQGDRDLCS-------SDTQHLQDQLQKSEEEKL 608
+ + +LLE E Q +A RL+ R L S LQ +L + EEE
Sbjct: 433 LQSEINQLHSKLLETERQLGEAH-GRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEELK 491
Query: 609 ALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSP----KPSQNEVEPE----GPGK 764
VT K+ ++ QAL+ S + +QN++E G
Sbjct: 492 EKVTN--------STELQHQLDKTKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIGDKD 543
Query: 765 EKDWDFRDQLQEKTLQLLAKEKECRDLHSEL 857
+K + LQ+ + EKE DL++++
Sbjct: 544 QKIQNLEALLQKSKENISLLEKEREDLYAKI 574
Score = 50.8 bits (120), Expect = 2e-06
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 10/309 (3%)
Frame = +3
Query: 57 KQELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKA 236
K E K L + + + ++ L+ L+S NQL++ +LE E Q +
Sbjct: 413 KAEFKQLQQQREEKDQHGLQ--LQSEINQLHS------------KLLETERQLGEAHGRL 458
Query: 237 KESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQL 416
KE Q E+ M EQQ+ Q L+ E++ +E + L+ QH+E ++
Sbjct: 459 KEQRQLSSEKLMDKEQQVADLQLKLSRLEEELKEKVTNSTELQHQLDKTKQQHQEQQALQ 518
Query: 417 HVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRD---LCSSDTQHLQDQLQ 587
+KL+ A + + Q LR + ++ Q++Q A LQ ++ L + + L ++Q
Sbjct: 519 QSTTAKLREAQN---DLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQ 575
Query: 588 KSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGKE 767
E E L K T ++Q + + K +N+ E K+
Sbjct: 576 AGEGETAVL-----------------NQLQEKNHTLQEQVTQLTEK-LKNQSESH---KQ 614
Query: 768 KDWDFRDQLQEKTLQL-------LAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELSL 926
+ DQ+QE+ L L+ E +L+S+L N S E +S L + + EL L
Sbjct: 615 AQENLHDQVQEQKAHLRAAQDRVLSLESSINELNSQL-NESKEKVSQLDIQVKAKTELLL 673
Query: 927 GQRPPPTRQ 953
T Q
Sbjct: 674 SAEAAKTAQ 682
>ref|XP_594411.5| PREDICTED: early endosome antigen 1, 162kD [Bos taurus].
Length = 1461
Score = 59.3 bits (142), Expect = 6e-09
Identities = 71/271 (26%), Positives = 122/271 (45%), Gaps = 25/271 (9%)
Frame = +3
Query: 120 KLRSLENQLYTCTQNYSPRGMKKVILEME-DQKHSYEQKAKESLQKVLEEKMSAEQQLQS 296
KL+S N+L QN + + KK + + ++KH+ E +K+S+Q L +K QQLQS
Sbjct: 313 KLKSSVNELTQKNQNLTEKLQKKELDYTQLEEKHNEECMSKKSIQASLHQKDLDCQQLQS 372
Query: 297 ----TQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQ 464
++ SL + + E + LKE+ + T+++ L+++ LQ + + D LQ
Sbjct: 373 RLSASETSLQRIQAELGEKGEATQKLKEELSEVETKYQHLKAEFKQLQQQREEKDQHGLQ 432
Query: 465 MNQAL-----RLLENEHQELQAKIARLQGDRDLCS-------SDTQHLQDQLQKSEEEKL 608
+ + +LLE E Q +A RL+ R L S LQ +L + EEE
Sbjct: 433 LQSEINQLHSKLLETERQLGEAH-GRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEELK 491
Query: 609 ALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSP----KPSQNEVEPE----GPGK 764
VT K+ ++ QAL+ S + +QN++E G
Sbjct: 492 EKVTN--------STELQHQLDKTKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIGDKD 543
Query: 765 EKDWDFRDQLQEKTLQLLAKEKECRDLHSEL 857
+K + LQ+ + EKE DL++++
Sbjct: 544 QKIQNLEALLQKSKENISLLEKEREDLYAKI 574
Score = 50.8 bits (120), Expect = 2e-06
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 10/309 (3%)
Frame = +3
Query: 57 KQELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKA 236
K E K L + + + ++ L+ L+S NQL++ +LE E Q +
Sbjct: 413 KAEFKQLQQQREEKDQHGLQ--LQSEINQLHS------------KLLETERQLGEAHGRL 458
Query: 237 KESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQL 416
KE Q E+ M EQQ+ Q L+ E++ +E + L+ QH+E ++
Sbjct: 459 KEQRQLSSEKLMDKEQQVADLQLKLSRLEEELKEKVTNSTELQHQLDKTKQQHQEQQALQ 518
Query: 417 HVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRD---LCSSDTQHLQDQLQ 587
+KL+ A + + Q LR + ++ Q++Q A LQ ++ L + + L ++Q
Sbjct: 519 QSTTAKLREAQN---DLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQ 575
Query: 588 KSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGKE 767
E E L K T ++Q + + K +N+ E K+
Sbjct: 576 AGEGETAVL-----------------NQLQEKNHTLQEQVTQLTEK-LKNQSESH---KQ 614
Query: 768 KDWDFRDQLQEKTLQL-------LAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELSL 926
+ DQ+QE+ L L+ E +L+S+L N S E +S L + + EL L
Sbjct: 615 AQENLHDQVQEQKAHLRAAQDRVLSLESSINELNSQL-NESKEKVSQLDIQVKAKTELLL 673
Query: 927 GQRPPPTRQ 953
T Q
Sbjct: 674 SAEAAKTAQ 682
>ref|XP_002698546.1| PREDICTED: coiled-coil domain containing 147-like [Bos taurus].
Length = 883
Score = 56.6 bits (135), Expect = 4e-08
Identities = 48/199 (24%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Frame = +3
Query: 57 KQELKPLDRHQGQLNEDKLKGKL-RSLENQLYTCTQNYSPRGMK--KVILEMEDQKHSYE 227
K LK + Q Q++ KL + R+LE ++ QNY K K+I ++E ++ Y
Sbjct: 401 KNMLKAVSATQKQIDLVKLHEQAKRNLEEEI----QNYKEEAQKQRKIIFQLEKERDRYI 456
Query: 228 QKAKESLQKVL---EEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHR 398
+A + QKVL E+ E Q+ ++ +A +E K ++ ++ YEA++ D
Sbjct: 457 NEASDLTQKVLMNMEDIKVREMQIFDYRKKIAESETKLKQQQNLYEAVRSDRNLYSKNLV 516
Query: 399 ELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQD 578
E + ++ ++ KL+ + Q+ + + E+ +L + R++ +++ ++ Q L+
Sbjct: 517 EAQDEITEMKRKLKIMTHQVDQLKEEISAKESALVKLHLEQQRIEKEKETLKAELQKLRQ 576
Query: 579 QL---------QKSEEEKL 608
Q Q++EE KL
Sbjct: 577 QALETKHFIEKQEAEERKL 595
>ref|XP_617064.4| PREDICTED: coiled-coil domain containing 147-like [Bos taurus].
Length = 931
Score = 56.6 bits (135), Expect = 4e-08
Identities = 48/199 (24%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Frame = +3
Query: 57 KQELKPLDRHQGQLNEDKLKGKL-RSLENQLYTCTQNYSPRGMK--KVILEMEDQKHSYE 227
K LK + Q Q++ KL + R+LE ++ QNY K K+I ++E ++ Y
Sbjct: 449 KNMLKAVSATQKQIDLVKLHEQAKRNLEEEI----QNYKEEAQKQRKIIFQLEKERDRYI 504
Query: 228 QKAKESLQKVL---EEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHR 398
+A + QKVL E+ E Q+ ++ +A +E K ++ ++ YEA++ D
Sbjct: 505 NEASDLTQKVLMNMEDIKVREMQIFDYRKKIAESETKLKQQQNLYEAVRSDRNLYSKNLV 564
Query: 399 ELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQD 578
E + ++ ++ KL+ + Q+ + + E+ +L + R++ +++ ++ Q L+
Sbjct: 565 EAQDEITEMKRKLKIMTHQVDQLKEEISAKESALVKLHLEQQRIEKEKETLKAELQKLRQ 624
Query: 579 QL---------QKSEEEKL 608
Q Q++EE KL
Sbjct: 625 QALETKHFIEKQEAEERKL 643
>ref|XP_002685844.1| PREDICTED: ciliary rootlet coiled-coil, rootletin [Bos taurus].
Length = 1975
Score = 53.5 bits (127), Expect = 3e-07
Identities = 76/312 (24%), Positives = 132/312 (42%), Gaps = 18/312 (5%)
Frame = +3
Query: 45 RARQKQELKPLDRHQGQLNED--KLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKH 218
RA +L +R L+E+ +L+ + +LE+ L+ + + ++ LE + +
Sbjct: 849 RAGLAVQLAAAEREGRALSEEAARLRSEKEALESSLFEVQRQLAQLESRREQLEADGRAL 908
Query: 219 SYEQKAKESLQKVL----------EEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKE 368
AKE+L L EEK + +++L + Q+ L + R Q A +E
Sbjct: 909 LL---AKEALTGELAGLRQQMAAAEEKAALDKEL-TAQKLLQTEREALSSLREQRAAHEE 964
Query: 369 DWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRD- 545
D + L + +L +++LQG R+ + + L LE E +EL ++A LQ +RD
Sbjct: 965 DLQRLQREKEAAWRELGAERARLQGQLQRERE--ELLARLEAEKEELSEEMAALQQERDE 1022
Query: 546 -LCSSDTQHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSP 722
L ++T+ Q L E EK AL K+ L +E
Sbjct: 1023 GLLLAETEK-QQALSLKESEKTALSEKL--------------MGTRHSLAAVSLEMERQK 1067
Query: 723 KPSQNEVEPE----GPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCL 890
+ +QN E + + D R QL+E A +E + L + +L + SCL
Sbjct: 1068 RDAQNRQEQDRSTVNALTSELRDLRAQLEEAA---AAHAQEVKRLREQAGDLGRQRESCL 1124
Query: 891 RKLQRCREELSL 926
R+ + R +L L
Sbjct: 1125 REAEELRTQLRL 1136
>ref|XP_002703811.1| PREDICTED: ciliary rootlet coiled-coil, rootletin [Bos taurus].
Length = 2040
Score = 53.5 bits (127), Expect = 3e-07
Identities = 76/312 (24%), Positives = 132/312 (42%), Gaps = 18/312 (5%)
Frame = +3
Query: 45 RARQKQELKPLDRHQGQLNED--KLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKH 218
RA +L +R L+E+ +L+ + +LE+ L+ + + ++ LE + +
Sbjct: 914 RAGLAVQLAAAEREGRALSEEAARLRSEKEALESSLFEVQRQLAQLESRREQLEADGRAL 973
Query: 219 SYEQKAKESLQKVL----------EEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKE 368
AKE+L L EEK + +++L + Q+ L + R Q A +E
Sbjct: 974 LL---AKEALTGELAGLRQQMAAAEEKAALDKEL-TAQKLLQTEREALSSLREQRAAHEE 1029
Query: 369 DWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRD- 545
D + L + +L +++LQG R+ + + L LE E +EL ++A LQ +RD
Sbjct: 1030 DLQRLQREKEAAWRELGAERARLQGQLQRERE--ELLARLEAEKEELSEEMAALQQERDE 1087
Query: 546 -LCSSDTQHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSP 722
L ++T+ Q L E EK AL K+ L +E
Sbjct: 1088 GLLLAETEK-QQALSLKESEKTALSEKL--------------MGTRHSLAAVSLEMERQK 1132
Query: 723 KPSQNEVEPE----GPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCL 890
+ +QN E + + D R QL+E A +E + L + +L + SCL
Sbjct: 1133 RDAQNRQEQDRSTVNALTSELRDLRAQLEEAA---AAHAQEVKRLREQAGDLGRQRESCL 1189
Query: 891 RKLQRCREELSL 926
R+ + R +L L
Sbjct: 1190 REAEELRTQLRL 1201
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,774,297
Number of extensions: 1111486
Number of successful extensions: 8250
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 7982
Number of HSP's successfully gapped: 29
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013154
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013154
(1133 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537137.2| PREDICTED: similar to TRAF3-interacting JNK-act... 473 e-133
Alignment gi|XP_857406.1| PREDICTED: similar to TRAF3-interacting JNK-act... 322 4e-88
Alignment gi|XP_857509.1| PREDICTED: similar to sarcolemma associated pro... 106 5e-23
Alignment gi|XP_857589.1| PREDICTED: similar to sarcolemma associated pro... 105 6e-23
Alignment gi|XP_857342.1| PREDICTED: similar to sarcolemma associated pro... 105 6e-23
Alignment gi|XP_857265.1| PREDICTED: similar to sarcolemma associated pro... 105 1e-22
Alignment gi|XP_857549.1| PREDICTED: similar to sarcolemma associated pro... 103 4e-22
Alignment gi|XP_857467.1| PREDICTED: similar to sarcolemma associated pro... 103 4e-22
Alignment gi|XP_857134.1| PREDICTED: similar to sarcolemma associated pro... 103 4e-22
Alignment gi|XP_533781.2| PREDICTED: similar to sarcolemma associated pro... 103 4e-22
>ref|XP_537137.2| PREDICTED: similar to TRAF3-interacting JNK-activating modulator
isoform 1 [Canis familiaris].
Length = 530
Score = 473 bits (1216), Expect = e-133
Identities = 243/294 (82%), Positives = 256/294 (87%), Gaps = 1/294 (0%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
+GQLNEDKLKGKLRSLENQLYTCTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEE
Sbjct: 215 KGQLNEDKLKGKLRSLENQLYTCTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEE 274
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWR LGTQHRELESQLHVLQSKLQGA
Sbjct: 275 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRKLGTQHRELESQLHVLQSKLQGA 334
Query: 447 DSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVTKV 626
DSRDLQMNQAL+LLENEHQELQAKI LQGDRD SSDTQHLQDQL++SEEEKL L+ KV
Sbjct: 335 DSRDLQMNQALQLLENEHQELQAKIELLQGDRD--SSDTQHLQDQLKRSEEEKLTLMAKV 392
Query: 627 XXXXXXXXXXXXXXXXXXKRLTKKDQALE-WSPKPSQNEVEPEGPGKEKDWDFRDQLQEK 803
K LTKKDQAL WSPKPS NEVEPEG GKEK+WDFRDQLQ+K
Sbjct: 393 QQLQGLLQNQSLQLQEQEKLLTKKDQALPLWSPKPSHNEVEPEGTGKEKEWDFRDQLQKK 452
Query: 804 TLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELSLGQRPPPTRQCGRW 965
TLQL AKEKECR+LHSELDNLSDEYLSCLRKLQ CREEL+ Q+PPP RQ G+W
Sbjct: 453 TLQLQAKEKECRELHSELDNLSDEYLSCLRKLQHCREELNQSQQPPPRRQYGQW 506
>ref|XP_857406.1| PREDICTED: similar to TRAF3-interacting JNK-activating modulator
isoform 2 [Canis familiaris].
Length = 445
Score = 322 bits (825), Expect = 4e-88
Identities = 170/208 (81%), Positives = 178/208 (85%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
+GQLNEDKLKGKLRSLENQLYTCTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEE
Sbjct: 235 KGQLNEDKLKGKLRSLENQLYTCTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEE 294
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWR LGTQHRELESQLHVLQSKLQGA
Sbjct: 295 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRKLGTQHRELESQLHVLQSKLQGA 354
Query: 447 DSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVTKV 626
DSRDLQMNQAL+LLENEHQELQAKI LQGDRD SSDTQHLQDQL++SEEEKL L+ KV
Sbjct: 355 DSRDLQMNQALQLLENEHQELQAKIELLQGDRD--SSDTQHLQDQLKRSEEEKLTLMAKV 412
Query: 627 XXXXXXXXXXXXXXXXXXKRLTKKDQAL 710
K LTKK Q +
Sbjct: 413 QQLQGLLQNQSLQLQEQEKLLTKKGQQI 440
>ref|XP_857509.1| PREDICTED: similar to sarcolemma associated protein isoform 13
[Canis familiaris].
Length = 622
Score = 106 bits (264), Expect = 5e-23
Identities = 74/290 (25%), Positives = 141/290 (48%), Gaps = 27/290 (9%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 73 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 132
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 133 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 192
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKS 593
+ + ++ Q + +E + QELQAKI LQ D D + LQ +L+
Sbjct: 193 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQVRLEHL 252
Query: 594 EEEKLA-----------LVTKVXXXXXXXXXXXXXXXXXXKR----LTKK-DQALEWSPK 725
+E+ L + K+ K+ L K+ +A E +
Sbjct: 253 QEKTLKECSSLGIQVDDFLPKINGSTEKDDLQGAQSEIEAKQEIQHLRKELIEAQELARA 312
Query: 726 PSQNEVEPEGPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDE 875
Q E + +E+ +R+Q++E + Q+ + + + LH ++NL +E
Sbjct: 313 SKQKCFELQALLEEERKAYRNQVEESSKQIQVLQAQLQRLHINIENLREE 362
>ref|XP_857589.1| PREDICTED: similar to sarcolemma associated protein isoform 15
[Canis familiaris].
Length = 631
Score = 105 bits (263), Expect = 6e-23
Identities = 71/299 (23%), Positives = 139/299 (46%), Gaps = 36/299 (12%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 73 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 132
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 133 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 192
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKS 593
+ + ++ Q + +E + QELQAKI LQ D D + LQ +L+
Sbjct: 193 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQVRLEHL 252
Query: 594 EEEKL---ALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGK 764
+E+ L + + K+ + K+ L + PS+ + +
Sbjct: 253 QEKTLKECSSLEKLIVEGHLTKVVEETKLSKENQARAKESDLSDTLSPSKEKSSDDTTDA 312
Query: 765 EKDWD----------------------FRDQLQEKTLQLLAKEKECRDLHSELDNLSDE 875
+ D +R+Q++E + Q+ + + + LH ++NL +E
Sbjct: 313 QMDEQDLNEPLAKVSLLKALLEEERKAYRNQVEESSKQIQVLQAQLQRLHINIENLREE 371
>ref|XP_857342.1| PREDICTED: similar to sarcolemma associated protein isoform 9
[Canis familiaris].
Length = 635
Score = 105 bits (263), Expect = 6e-23
Identities = 71/299 (23%), Positives = 139/299 (46%), Gaps = 36/299 (12%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 73 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 132
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 133 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 192
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKS 593
+ + ++ Q + +E + QELQAKI LQ D D + LQ +L+
Sbjct: 193 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQVRLEHL 252
Query: 594 EEEKL---ALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGK 764
+E+ L + + K+ + K+ L + PS+ + +
Sbjct: 253 QEKTLKECSSLEKLIVEGHLTKVVEETKLSKENQARAKESDLSDTLSPSKEKSSDDTTDA 312
Query: 765 EKDWD----------------------FRDQLQEKTLQLLAKEKECRDLHSELDNLSDE 875
+ D +R+Q++E + Q+ + + + LH ++NL +E
Sbjct: 313 QMDEQDLNEPLAKVSLLKALLEEERKAYRNQVEESSKQIQVLQAQLQRLHINIENLREE 371
>ref|XP_857265.1| PREDICTED: similar to sarcolemma associated protein isoform 7
[Canis familiaris].
Length = 618
Score = 105 bits (261), Expect = 1e-22
Identities = 71/282 (25%), Positives = 135/282 (47%), Gaps = 19/282 (6%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 73 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 132
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 133 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 192
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQL-QK 590
+ + ++ Q + +E + QELQAKI LQ D D + LQ++L +
Sbjct: 193 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQEKLIVE 252
Query: 591 SEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEP------- 749
K+ TK+ K + Q+ EP
Sbjct: 253 GHLTKVVEETKLSKENQARAKESDLSDTLSPSKEKSSDDTTDAQMDEQDLNEPLAKVSLL 312
Query: 750 EGPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDE 875
+ +E+ +R+Q++E + Q+ + + + LH ++NL +E
Sbjct: 313 KALLEEERKAYRNQVEESSKQIQVLQAQLQRLHINIENLREE 354
>ref|XP_857549.1| PREDICTED: similar to sarcolemma associated protein isoform 14
[Canis familiaris].
Length = 675
Score = 103 bits (256), Expect = 4e-22
Identities = 56/185 (30%), Positives = 102/185 (55%), Gaps = 11/185 (5%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 73 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 132
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 133 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 192
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKS 593
+ + ++ Q + +E + QELQAKI LQ D D + LQ +L+
Sbjct: 193 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQVRLEHL 252
Query: 594 EEEKL 608
+E+ L
Sbjct: 253 QEKTL 257
>ref|XP_857467.1| PREDICTED: similar to sarcolemma associated protein isoform 12
[Canis familiaris].
Length = 635
Score = 103 bits (256), Expect = 4e-22
Identities = 55/186 (29%), Positives = 102/186 (54%), Gaps = 11/186 (5%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 73 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 132
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 133 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 192
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKS 593
+ + ++ Q + +E + QELQAKI LQ D D + LQ+ ++
Sbjct: 193 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQENQARA 252
Query: 594 EEEKLA 611
+E L+
Sbjct: 253 KESDLS 258
>ref|XP_857134.1| PREDICTED: similar to sarcolemma associated protein isoform 4
[Canis familiaris].
Length = 821
Score = 103 bits (256), Expect = 4e-22
Identities = 56/185 (30%), Positives = 102/185 (55%), Gaps = 11/185 (5%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 205 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 264
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 265 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 324
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKS 593
+ + ++ Q + +E + QELQAKI LQ D D + LQ +L+
Sbjct: 325 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQVRLEHL 384
Query: 594 EEEKL 608
+E+ L
Sbjct: 385 QEKTL 389
>ref|XP_533781.2| PREDICTED: similar to sarcolemma associated protein isoform 1
[Canis familiaris].
Length = 821
Score = 103 bits (256), Expect = 4e-22
Identities = 56/185 (30%), Positives = 102/185 (55%), Gaps = 11/185 (5%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 205 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 264
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 265 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 324
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKS 593
+ + ++ Q + +E + QELQAKI LQ D D + LQ +L+
Sbjct: 325 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQVRLEHL 384
Query: 594 EEEKL 608
+E+ L
Sbjct: 385 QEKTL 389
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,284,904
Number of extensions: 1132540
Number of successful extensions: 9171
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 8827
Number of HSP's successfully gapped: 49
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013154
(1133 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132316.1| PREDICTED: sarcolemmal membrane-associated p... 77 1e-14
Alignment gi|XP_001926390.1| PREDICTED: early endosome antigen 1 [Sus scr... 59 4e-09
Alignment gi|XP_003130443.2| PREDICTED: centromere protein F, partial [Su... 57 1e-08
Alignment gi|XP_003122643.2| PREDICTED: coiled-coil domain-containing pro... 54 1e-07
Alignment gi|XP_001924306.1| PREDICTED: TATA element modulatory factor [S... 53 3e-07
Alignment gi|XP_003354816.1| PREDICTED: dynactin subunit 1-like [Sus scro... 53 4e-07
Alignment gi|XP_003354812.1| PREDICTED: dynactin subunit 1 isoform 3 [Sus... 53 4e-07
Alignment gi|XP_003125069.2| PREDICTED: dynactin subunit 1 isoform 1 [Sus... 53 4e-07
Alignment gi|XP_003354811.1| PREDICTED: dynactin subunit 1 isoform 2 [Sus... 53 4e-07
Alignment gi|XP_003354686.1| PREDICTED: bicaudal D-related protein 2 [Sus... 52 6e-07
>ref|XP_003132316.1| PREDICTED: sarcolemmal membrane-associated protein [Sus scrofa].
Length = 775
Score = 77.4 bits (189), Expect = 1e-14
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 1/167 (0%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 205 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 264
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALK-EDWRTLGTQHRELESQLHVLQSKLQG 443
K+ ++L S+ E L +D LG++ + E +Q K Q
Sbjct: 265 KIDVVRKL------------------SEVELLAFQDISNLGSRGIQEE-----IQQKGQ- 300
Query: 444 ADSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQL 584
A+ ++LQ N + +E + QELQAKI LQ D D + LQ+ L
Sbjct: 301 AEKKELQHN--IDEMEEKEQELQAKIEALQADNDFTNERLTALQEHL 345
>ref|XP_001926390.1| PREDICTED: early endosome antigen 1 [Sus scrofa].
Length = 1410
Score = 59.3 bits (142), Expect = 4e-09
Identities = 69/274 (25%), Positives = 128/274 (46%), Gaps = 28/274 (10%)
Frame = +3
Query: 120 KLRSLENQLYTCTQNYSPRGMKKVILEME-DQKHSYEQKAKESLQKVLEEKMSAEQQLQS 296
KL+S N+L QN + + KK + ++ ++KH+ E +K+++Q L +K QQLQS
Sbjct: 291 KLKSSVNELTQKNQNLTEKLQKKELDYIQLEEKHNEECVSKKNIQASLHQKDLDCQQLQS 350
Query: 297 ----TQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQ 464
++ SL + + E + LKE+ + T+H+ L+++ LQ + + + LQ
Sbjct: 351 RLSASETSLQRIQAELGEKGEATQKLKEELSEVETKHQHLKAEFKQLQQQREEKEQHGLQ 410
Query: 465 MNQAL-----RLLENEHQELQAKIARLQGDRDLCS----------SDTQHLQDQLQKSEE 599
+ + +LLE E Q +A RL+ R L S +D Q +L++ +
Sbjct: 411 LQSEINQLHSKLLETERQLGEAH-GRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEELK 469
Query: 600 EKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSP----KPSQNEVEPE----G 755
EK+A T++ K+ ++ QAL+ S + +QN++E G
Sbjct: 470 EKVANSTEL-----------QHQLDKTKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIG 518
Query: 756 PGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSEL 857
+K + LQ+ + EKE DL++++
Sbjct: 519 DKDQKIQNLEALLQKSKENISLLEKEREDLYAKI 552
Score = 50.1 bits (118), Expect = 2e-06
Identities = 72/314 (22%), Positives = 136/314 (43%), Gaps = 16/314 (5%)
Frame = +3
Query: 27 SRSEAGRARQKQELKPLD--------RHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGM 182
S+SE + QK + LD +HQ Q+ + + L+N L + + +
Sbjct: 871 SKSEFEKESQKGKAAILDLEKTCKDLKHQLQVQIESAHKEQNELKNSLEK--EKETSHQL 928
Query: 183 KKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEAL 362
K I M+ Q Q L++K EQQLQ L +Q E+ + Q EAL
Sbjct: 929 KLEINSMQGQL--------TQAQNSLKQKEKEEQQLQGNINEL---KQLTEQKKKQIEAL 977
Query: 363 KEDWRTLGTQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGD- 539
+ + + +Q ELE++L Q Q A + + + +L+N +++ Q + +LQ D
Sbjct: 978 QGEVKIAVSQKTELENKLQ--QQSTQAAQELAAE-KEKISVLQNAYEKNQENLKQLQSDF 1034
Query: 540 ----RDLCSS--DTQHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKD 701
+L ++ D + ++++L ++E+ ++ ++ + KK+
Sbjct: 1035 YGKESELLATRQDLKSVEEKLSLAQEDLISNRNQIGNQNKLIQELKTARTTLEQDSAKKE 1094
Query: 702 QALEWSPKPSQNEVEPEGPGKEKDW-DFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEY 878
+ L+ K Q +V+ E KEK+ + + +L E +EKE L EL + E
Sbjct: 1095 EQLKEQCKALQ-DVQKEKSLKEKELVNEKSKLAEIEEIKCRQEKEIAKLSEELKSHKQES 1153
Query: 879 LSCLRKLQRCREEL 920
+ + L+ R+ L
Sbjct: 1154 IKEVTNLKDARQLL 1167
Score = 48.9 bits (115), Expect = 5e-06
Identities = 68/319 (21%), Positives = 123/319 (38%), Gaps = 10/319 (3%)
Frame = +3
Query: 27 SRSEAGRARQKQELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEME 206
S E K E K L + + + + L+ L+S NQL++ +LE E
Sbjct: 381 SEVETKHQHLKAEFKQLQQQREEKEQHGLQ--LQSEINQLHS------------KLLETE 426
Query: 207 DQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLG 386
Q + KE Q E+ M EQQ+ Q L+ E++ +E + L+
Sbjct: 427 RQLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEELKEKVANSTELQHQLDKTK 486
Query: 387 TQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRD---LCSS 557
QH+E ++ +KL+ A + + Q LR + ++ Q++Q A LQ ++ L
Sbjct: 487 QQHQEQQALQQSTTAKLREAQN---DLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEK 543
Query: 558 DTQHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQN 737
+ + L ++Q E E L +L +K+ L+
Sbjct: 544 EREDLYAKIQAGEGETAVL----------------------NQLQEKNHILQEQVTQLTE 581
Query: 738 EVEPEGPG-KEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQ---- 902
+++ + K+ + DQ+QE+ L A + L + + LS + K+
Sbjct: 582 KLKNQSESHKQAQENLHDQVQEQKAHLRAAQDRVLSLEASISELSSQLNESKEKVSQLDI 641
Query: 903 --RCREELSLGQRPPPTRQ 953
+ + EL L T Q
Sbjct: 642 QIKAKTELLLSAEAAKTAQ 660
>ref|XP_003130443.2| PREDICTED: centromere protein F, partial [Sus scrofa].
Length = 3003
Score = 57.4 bits (137), Expect = 1e-08
Identities = 67/280 (23%), Positives = 120/280 (42%), Gaps = 15/280 (5%)
Frame = +3
Query: 132 LENQLYTCTQNYSPR--GMKKVILEMEDQKHSYEQ---KAKESLQKVLEEKMSAEQQLQS 296
+E+ + T N+ R M + ++ +K S E A+ L+ V EK+ E+ ++
Sbjct: 1878 IEDDVAKVTDNWGERYFDMNNELQRIKSEKGSTEHHALSAEADLEVVQTEKLYLEKDNEN 1937
Query: 297 TQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSK---LQGADSRDLQM 467
Q+ + E++ + + L+ED TL +++EL+ ++ K L+ L +
Sbjct: 1938 KQKVITCLEEELSVVTRERDRLREDLDTLSKENKELDQLSEKMKEKIGELESLQGERLHL 1997
Query: 468 NQALRLLENEHQ-------ELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVTKV 626
+ L+ LE + Q EL+ +I +L ++D +++ LQ +L + E EKL + +
Sbjct: 1998 QEQLQRLEEDSQALSLVRSELENQIGQLNKEKDSLIRESESLQGKLSELEREKLTIAKAL 2057
Query: 627 XXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGKEKDWDFRDQLQEKT 806
+ K + A+ S +Q EV G EK R + EK
Sbjct: 2058 EAAL----------------MEKGEVAVRLS--STQEEVHQLRKGIEK-LQVRIEADEKK 2098
Query: 807 LQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELSL 926
QL EK R+ D L D+ + R+LQ E L
Sbjct: 2099 -QLHVSEK-LRESERRNDALQDKVENLERELQMAEENQEL 2136
Score = 50.4 bits (119), Expect = 2e-06
Identities = 65/303 (21%), Positives = 126/303 (41%), Gaps = 8/303 (2%)
Frame = +3
Query: 21 LESRSEAGRARQKQELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILE 200
L+ R EA +Q + L + + D L+ K+ +LE +L +N + VIL+
Sbjct: 2088 LQVRIEADEKKQLHVSEKL--RESERRNDALQDKVENLERELQMAEEN-----QELVILD 2140
Query: 201 MEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRT 380
E+ K + K ++ + E + E L +TQ S+ E L + +
Sbjct: 2141 AENSKAEVDT-LKTQIELMTESLKTLELDLVTTQ--------------SEKETLTKQLQE 2185
Query: 381 LGTQHRELESQLHVLQSKLQGADSRDLQMNQ----ALRLLENEHQELQAKIARLQGDRDL 548
Q EL++ L L++ L+G + +QM + A+ +L+ + +EL ++A L D++
Sbjct: 2186 KQGQVSELDTLLSSLKNLLEGKEQEKIQMKEESKAAVEMLQTQLKELTEEVAALCKDQET 2245
Query: 549 CSSDTQHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKP 728
+ Q L +Q+ + + + K+ K L+ K
Sbjct: 2246 WKAQGQSLDSPVQEIHQLRCG-IGKLKVHREADEKKQLHILEKLKESEHHADLLKDRVKN 2304
Query: 729 SQNEVEPEGPGKEKDWDFRDQLQEKTLQLLAKEKE----CRDLHSELDNLSDEYLSCLRK 896
+ E+E G +E ++ + + L AK +E RD +L N+ E +++
Sbjct: 2305 LERELEVSGKNQEHAILEAEKSKAEVETLEAKIEEMAQNLRDSELDLVNIRSEKQDLMKE 2364
Query: 897 LQR 905
LQ+
Sbjct: 2365 LQK 2367
Score = 49.3 bits (116), Expect = 4e-06
Identities = 64/309 (20%), Positives = 128/309 (41%), Gaps = 16/309 (5%)
Frame = +3
Query: 48 ARQKQELKPLDR-HQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQK--- 215
A +K++L L++ + + + D LK ++++LE +L S + + ILE E K
Sbjct: 2276 ADEKKQLHILEKLKESEHHADLLKDRVKNLEREL-----EVSGKNQEHAILEAEKSKAEV 2330
Query: 216 HSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQH 395
+ E K +E Q + + ++ ++S ++ L QK + S+ E L + L
Sbjct: 2331 ETLEAKIEEMAQNLRDSELDLVN-IRSEKQDLMKELQKEQGRVSELEKLNSSFEKL---- 2385
Query: 396 RELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQ 575
LQ K Q + A+ + + + QEL+ K+A L D++ Q L
Sbjct: 2386 ---------LQDKEQEKEQMKEDSKAAVEMFQMQLQELKEKVATLCDDQETWKIKEQSLS 2436
Query: 576 DQLQKSEEEKLALV-------TKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQ 734
Q+ E+EK L+ + ++L KKD+ + +Q
Sbjct: 2437 SQVDSLEQEKAQLLQGLDEAKSNYVILQNSVNGLIQEVEDSKQKLEKKDEEICILQNQTQ 2496
Query: 735 NEVE-----PEGPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCLRKL 899
+ + + G+++ W + Q E ++ E++ +++ S+ D L D +
Sbjct: 2497 DHEQLVSKLSQMEGEQQLW--KKQKTELGNLMVEMEQKIQEVQSQKDTLQDALEALQNSS 2554
Query: 900 QRCREELSL 926
+ +EL L
Sbjct: 2555 EGLEKELEL 2563
>ref|XP_003122643.2| PREDICTED: coiled-coil domain-containing protein 88B [Sus scrofa].
Length = 1465
Score = 54.3 bits (129), Expect = 1e-07
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDK--LKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYE 227
Q L ++R L +K L+G+L+ LE QL + R + ++ Q+HS
Sbjct: 1163 QSMRLIEVERSNATLAAEKAALQGQLQHLEGQL----GSLQGRAQELLLQSQRAQEHSSR 1218
Query: 228 QKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELE 407
+A++S+ ++ +++ ++L + + A + EE R Q +AL D L R E
Sbjct: 1219 LQAEKSVLEIQGQEL--HRKLGVLEEEVQAARRSQEETRGQQQALLRDHEALAQLQRRQE 1276
Query: 408 SQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDR 542
++L L ++ RDL+ N +R LE H+ELQ + +LQ R
Sbjct: 1277 AELEGLLAR-----HRDLKAN--MRALELAHRELQGRHEQLQAQR 1314
>ref|XP_001924306.1| PREDICTED: TATA element modulatory factor [Sus scrofa].
Length = 1016
Score = 53.1 bits (126), Expect = 3e-07
Identities = 79/301 (26%), Positives = 133/301 (44%), Gaps = 10/301 (3%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKH--SYE 227
++QE K L R Q +NE L+ K RS++ L + + + + E Q+ S E
Sbjct: 556 ERQE-KDLGRLQLDMNE--LEEKNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSRE 612
Query: 228 QKAKESLQKVLEEKMSAEQQLQSTQR----SLALAEQKCEEWRSQYEALKEDWRTLGTQH 395
+AKE L LE+ +Q Q T L LA Q+ E Q A KED+
Sbjct: 613 MRAKEELSAALEKAQEEARQQQETLAIQVGDLRLALQRAE----QAAARKEDY------- 661
Query: 396 RELESQLHVLQSKLQGADSRDLQMNQAL----RLLENEHQELQAKIARLQGDRDLCSSDT 563
L ++ LQ +LQ A++R+ +++Q++ R L + + LQA + +
Sbjct: 662 --LRHEISELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQATLGSQTSSWEKLE--- 716
Query: 564 QHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEV 743
++L D+L +S+ A V + + L K ++ S SQN +
Sbjct: 717 KNLSDRLGESQTLLAAAVER-------------ERAATEELLANK---VQMSSMESQNSL 760
Query: 744 EPEGPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELS 923
++++ F+ QL+ + +L E E EL+NL DEY +R L+ R+E +
Sbjct: 761 L-----RQENSRFQAQLESEKNRLRKLEDENNRYQVELENLKDEY---VRTLEETRKEKT 812
Query: 924 L 926
L
Sbjct: 813 L 813
>ref|XP_003354816.1| PREDICTED: dynactin subunit 1-like [Sus scrofa].
Length = 909
Score = 52.8 bits (125), Expect = 4e-07
Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 4/190 (2%)
Frame = +3
Query: 45 RARQKQELKPLDRHQGQLNE-DKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHS 221
RA K +LK L++H+ QL + + K K++ + L R +K+ E ++
Sbjct: 238 RAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQ--------RRLKEARKEAKE---- 285
Query: 222 YEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRE 401
A E+ ++ +EE ++ +AE++ E + + EALKE + E
Sbjct: 286 ----ALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE-------RVDE 334
Query: 402 LESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQH---L 572
L + L +L+++++ S + L+ LE ++ L+ + R+ RDL SS+ Q L
Sbjct: 335 LTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRM---RDLSSSEKQEHVKL 391
Query: 573 QDQLQKSEEE 602
Q ++K +E
Sbjct: 392 QKLMEKKNQE 401
>ref|XP_003354812.1| PREDICTED: dynactin subunit 1 isoform 3 [Sus scrofa].
Length = 1274
Score = 52.8 bits (125), Expect = 4e-07
Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 4/190 (2%)
Frame = +3
Query: 45 RARQKQELKPLDRHQGQLNE-DKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHS 221
RA K +LK L++H+ QL + + K K++ + L R +K+ E ++
Sbjct: 231 RAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQ--------RRLKEARKEAKE---- 278
Query: 222 YEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRE 401
A E+ ++ +EE ++ +AE++ E + + EALKE + E
Sbjct: 279 ----ALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE-------RVDE 327
Query: 402 LESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQH---L 572
L + L +L+++++ S + L+ LE ++ L+ + R+ RDL SS+ Q L
Sbjct: 328 LTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRM---RDLSSSEKQEHVKL 384
Query: 573 QDQLQKSEEE 602
Q ++K +E
Sbjct: 385 QKLMEKKNQE 394
>ref|XP_003125069.2| PREDICTED: dynactin subunit 1 isoform 1 [Sus scrofa].
Length = 1281
Score = 52.8 bits (125), Expect = 4e-07
Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 4/190 (2%)
Frame = +3
Query: 45 RARQKQELKPLDRHQGQLNE-DKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHS 221
RA K +LK L++H+ QL + + K K++ + L R +K+ E ++
Sbjct: 238 RAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQ--------RRLKEARKEAKE---- 285
Query: 222 YEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRE 401
A E+ ++ +EE ++ +AE++ E + + EALKE + E
Sbjct: 286 ----ALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE-------RVDE 334
Query: 402 LESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQH---L 572
L + L +L+++++ S + L+ LE ++ L+ + R+ RDL SS+ Q L
Sbjct: 335 LTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRM---RDLSSSEKQEHVKL 391
Query: 573 QDQLQKSEEE 602
Q ++K +E
Sbjct: 392 QKLMEKKNQE 401
>ref|XP_003354811.1| PREDICTED: dynactin subunit 1 isoform 2 [Sus scrofa].
Length = 1256
Score = 52.8 bits (125), Expect = 4e-07
Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 4/190 (2%)
Frame = +3
Query: 45 RARQKQELKPLDRHQGQLNE-DKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHS 221
RA K +LK L++H+ QL + + K K++ + L R +K+ E ++
Sbjct: 218 RAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQ--------RRLKEARKEAKE---- 265
Query: 222 YEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRE 401
A E+ ++ +EE ++ +AE++ E + + EALKE + E
Sbjct: 266 ----ALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE-------RVDE 314
Query: 402 LESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQH---L 572
L + L +L+++++ S + L+ LE ++ L+ + R+ RDL SS+ Q L
Sbjct: 315 LTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDALVRM---RDLSSSEKQEHVKL 371
Query: 573 QDQLQKSEEE 602
Q ++K +E
Sbjct: 372 QKLMEKKNQE 381
>ref|XP_003354686.1| PREDICTED: bicaudal D-related protein 2 [Sus scrofa].
Length = 507
Score = 52.0 bits (123), Expect = 6e-07
Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 16/272 (5%)
Frame = +3
Query: 108 KLKGKLRSLENQL--YTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAE 281
+L+G + +L QL Q S R + + E+ +Q Q+ ++ Q E+++ E
Sbjct: 120 ELEGDVEALRAQLGEQRSEQQDSGRERVRALTELSEQNLRLSQQLAQASQT--EQELQRE 177
Query: 282 QQ-LQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRD 458
L+ ++ ALA E R++ E+L+ + + L + ++LESQ+ L+ +++ R
Sbjct: 178 LDGLRGQCQAQALAGA---ELRTRLESLQGENQMLQGRRQDLESQIRGLREEVEKGQGRL 234
Query: 459 LQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEE------------ 602
++ L LL E +E ++ R + + S + LQ ++ + EEE
Sbjct: 235 QATHEELLLLRRERREHSLELERARSEAGEALSALRRLQRRVSELEEESRLQDADISGAS 294
Query: 603 -KLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGKEKDWD 779
+L L + + +A P P + +EP P K+
Sbjct: 295 LQLELAHSLDSDHDQDQNTDRCRDTLTTLSLETQEASSHQPSPQKENLEP--PRKQASLS 352
Query: 780 FRDQLQEKTLQLLAKEKECRDLHSELDNLSDE 875
+ L+EK +++ + E +EL +L DE
Sbjct: 353 RGEMLEEKEAEVVRLQDEIELQRTELQSLRDE 384
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,633,308
Number of extensions: 716524
Number of successful extensions: 5258
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5113
Number of HSP's successfully gapped: 18
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013154
(1133 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694777.3| TRAF3-interacting JNK-activating modulator [Mus... 333 2e-91
Alignment gi|NP_114397.3| sarcolemmal membrane-associated protein [Mus mu... 104 1e-22
Alignment gi|NP_082757.1| coiled-coil domain-containing protein 18 [Mus m... 56 5e-08
Alignment gi|NP_001154896.1| NF-kappa-B essential modulator isoform 2 [Mu... 54 3e-07
Alignment gi|NP_001154893.1| NF-kappa-B essential modulator isoform 4 [Mu... 54 3e-07
Alignment gi|NP_848705.1| NF-kappa-B essential modulator isoform 2 [Mus m... 54 3e-07
Alignment gi|NP_001154895.1| NF-kappa-B essential modulator isoform 1 [Mu... 52 7e-07
Alignment gi|NP_001154894.1| NF-kappa-B essential modulator isoform 5 [Mu... 52 7e-07
Alignment gi|NP_001129539.1| NF-kappa-B essential modulator isoform 3 [Mu... 52 7e-07
Alignment gi|NP_034677.2| NF-kappa-B essential modulator isoform 1 [Mus m... 52 7e-07
>ref|NP_694777.3| TRAF3-interacting JNK-activating modulator [Mus musculus].
Length = 513
Score = 333 bits (853), Expect = 2e-91
Identities = 179/250 (71%), Positives = 199/250 (79%), Gaps = 1/250 (0%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
+GQLNEDKLKGKLRSLENQLYTC Q +SP GMKKV+LEMEDQ+ SYEQKAK SLQKVLEE
Sbjct: 235 KGQLNEDKLKGKLRSLENQLYTCLQKHSPWGMKKVLLEMEDQRSSYEQKAKASLQKVLEE 294
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
KM AEQQLQ Q SLALAEQKC+EW+SQYEALKEDWRTLG QHRELESQLHVLQSKLQGA
Sbjct: 295 KMCAEQQLQRAQLSLALAEQKCQEWKSQYEALKEDWRTLGDQHRELESQLHVLQSKLQGA 354
Query: 447 DSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVTKV 626
DSRD QM+QAL+LLENEHQELQ K+ LQGD + SS+TQ LQDQL+KSEEEK ALV+KV
Sbjct: 355 DSRDSQMSQALQLLENEHQELQTKLESLQGDGEQQSSETQDLQDQLKKSEEEKQALVSKV 414
Query: 627 XXXXXXXXXXXXXXXXXXKRLTKKDQALE-WSPKPSQNEVEPEGPGKEKDWDFRDQLQEK 803
K L KKDQ L W+PK S +EV+PEG KEK+ + RDQLQ++
Sbjct: 415 QQLQSLLQNQSLQLQEQEK-LLKKDQGLPVWNPKLSLDEVKPEGTRKEKEEELRDQLQKE 473
Query: 804 TLQLLAKEKE 833
T QL KEKE
Sbjct: 474 TFQLQVKEKE 483
>ref|NP_114397.3| sarcolemmal membrane-associated protein [Mus musculus].
Length = 821
Score = 104 bits (259), Expect = 1e-22
Identities = 57/185 (30%), Positives = 102/185 (55%), Gaps = 11/185 (5%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KHSYE AKESL++VL+E
Sbjct: 205 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHSYETTAKESLRRVLQE 264
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 265 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 324
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKS 593
+ + ++ Q + +E + QELQAKI LQ D D + LQ +L+
Sbjct: 325 EGKQEEIQQKGQAEKKELQTKIDEMEEKEQELQAKIEALQADNDFTNERLTALQVRLEHL 384
Query: 594 EEEKL 608
+E+ L
Sbjct: 385 QEKTL 389
>ref|NP_082757.1| coiled-coil domain-containing protein 18 [Mus musculus].
Length = 1455
Score = 56.2 bits (134), Expect = 5e-08
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Frame = +3
Query: 222 YEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRE 401
Y++K E L+KV +E+ E+ L + ++ ++KC ++S+ E LKE +R L +H
Sbjct: 258 YKEKVAEKLEKVQDEEEILERNLSNCEKENKRLQEKCNLYKSELEILKEKFRELKEEHYS 317
Query: 402 LESQLHVLQSKLQGADSRDLQMNQALRLLE-----------------NEHQELQAKIARL 530
+ +L ++ K S+ + Q + LE NE++EL+ ++A
Sbjct: 318 GKEKLMIMAMKNSEVMSQLTESRQCILKLERELEDKDEIVREKFSLLNENRELKVRVATQ 377
Query: 531 QGDRDLCSSDTQHLQDQLQKSEEEKLALVTKV 626
+LC D + + +L+ E+ L+T++
Sbjct: 378 NERLELCQQDIDNSRVELKSLEK----LITQI 405
>ref|NP_001154896.1| NF-kappa-B essential modulator isoform 2 [Mus musculus].
Length = 411
Score = 53.5 bits (127), Expect = 3e-07
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 23/213 (10%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDKLKGKL-----RSLENQLYTCTQNYSPRGMKKVILEMEDQKH 218
+ QEL+ R Q+ ++ + L + E + C + + ++++ LE D +
Sbjct: 57 ENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEKLDLRS 116
Query: 219 SYEQKAKE-----SLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTL 383
EQ KE Q++ E+K S + Q+ S L ++ + E +AL+ R +
Sbjct: 117 QREQALKELEQLKKCQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQALEGRIRAV 176
Query: 384 GTQHRELESQLHVLQSKLQGADSRDLQMNQ----ALRLLENEHQELQAKIARLQG----- 536
Q R+LES+ VLQ + + NQ ALR+ E + K+A+LQ
Sbjct: 177 SEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQLQAAYHQL 236
Query: 537 ----DRDLCSSDTQHLQDQLQKSEEEKLALVTK 623
D + SS L+D Q+ ++ + ALV K
Sbjct: 237 FQDYDSHIKSSKGMQLEDLRQQLQQAEEALVAK 269
>ref|NP_001154893.1| NF-kappa-B essential modulator isoform 4 [Mus musculus].
Length = 429
Score = 53.5 bits (127), Expect = 3e-07
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 23/213 (10%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDKLKGKL-----RSLENQLYTCTQNYSPRGMKKVILEMEDQKH 218
+ QEL+ R Q+ ++ + L + E + C + + ++++ LE D +
Sbjct: 75 ENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEKLDLRS 134
Query: 219 SYEQKAKE-----SLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTL 383
EQ KE Q++ E+K S + Q+ S L ++ + E +AL+ R +
Sbjct: 135 QREQALKELEQLKKCQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQALEGRIRAV 194
Query: 384 GTQHRELESQLHVLQSKLQGADSRDLQMNQ----ALRLLENEHQELQAKIARLQG----- 536
Q R+LES+ VLQ + + NQ ALR+ E + K+A+LQ
Sbjct: 195 SEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQLQAAYHQL 254
Query: 537 ----DRDLCSSDTQHLQDQLQKSEEEKLALVTK 623
D + SS L+D Q+ ++ + ALV K
Sbjct: 255 FQDYDSHIKSSKGMQLEDLRQQLQQAEEALVAK 287
>ref|NP_848705.1| NF-kappa-B essential modulator isoform 2 [Mus musculus].
Length = 411
Score = 53.5 bits (127), Expect = 3e-07
Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 23/213 (10%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDKLKGKL-----RSLENQLYTCTQNYSPRGMKKVILEMEDQKH 218
+ QEL+ R Q+ ++ + L + E + C + + ++++ LE D +
Sbjct: 57 ENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEKLDLRS 116
Query: 219 SYEQKAKE-----SLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTL 383
EQ KE Q++ E+K S + Q+ S L ++ + E +AL+ R +
Sbjct: 117 QREQALKELEQLKKCQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQALEGRIRAV 176
Query: 384 GTQHRELESQLHVLQSKLQGADSRDLQMNQ----ALRLLENEHQELQAKIARLQG----- 536
Q R+LES+ VLQ + + NQ ALR+ E + K+A+LQ
Sbjct: 177 SEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQLQAAYHQL 236
Query: 537 ----DRDLCSSDTQHLQDQLQKSEEEKLALVTK 623
D + SS L+D Q+ ++ + ALV K
Sbjct: 237 FQDYDSHIKSSKGMQLEDLRQQLQQAEEALVAK 269
>ref|NP_001154895.1| NF-kappa-B essential modulator isoform 1 [Mus musculus].
Length = 412
Score = 52.4 bits (124), Expect = 7e-07
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 24/214 (11%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDKLKGKL-----RSLENQLYTCTQNYSPRGMKKVILEMEDQKH 218
+ QEL+ R Q+ ++ + L + E + C + + ++++ LE D +
Sbjct: 57 ENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEKLDLRS 116
Query: 219 SYEQKAKE------SLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRT 380
EQ KE Q++ E+K S + Q+ S L ++ + E +AL+ R
Sbjct: 117 QREQALKELEQLKKCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQALEGRIRA 176
Query: 381 LGTQHRELESQLHVLQSKLQGADSRDLQMNQ----ALRLLENEHQELQAKIARLQG---- 536
+ Q R+LES+ VLQ + + NQ ALR+ E + K+A+LQ
Sbjct: 177 VSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQLQAAYHQ 236
Query: 537 -----DRDLCSSDTQHLQDQLQKSEEEKLALVTK 623
D + SS L+D Q+ ++ + ALV K
Sbjct: 237 LFQDYDSHIKSSKGMQLEDLRQQLQQAEEALVAK 270
>ref|NP_001154894.1| NF-kappa-B essential modulator isoform 5 [Mus musculus].
Length = 424
Score = 52.4 bits (124), Expect = 7e-07
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 24/214 (11%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDKLKGKL-----RSLENQLYTCTQNYSPRGMKKVILEMEDQKH 218
+ QEL+ R Q+ ++ + L + E + C + + ++++ LE D +
Sbjct: 69 ENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEKLDLRS 128
Query: 219 SYEQKAKE------SLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRT 380
EQ KE Q++ E+K S + Q+ S L ++ + E +AL+ R
Sbjct: 129 QREQALKELEQLKKCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQALEGRIRA 188
Query: 381 LGTQHRELESQLHVLQSKLQGADSRDLQMNQ----ALRLLENEHQELQAKIARLQG---- 536
+ Q R+LES+ VLQ + + NQ ALR+ E + K+A+LQ
Sbjct: 189 VSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQLQAAYHQ 248
Query: 537 -----DRDLCSSDTQHLQDQLQKSEEEKLALVTK 623
D + SS L+D Q+ ++ + ALV K
Sbjct: 249 LFQDYDSHIKSSKGMQLEDLRQQLQQAEEALVAK 282
>ref|NP_001129539.1| NF-kappa-B essential modulator isoform 3 [Mus musculus].
Length = 430
Score = 52.4 bits (124), Expect = 7e-07
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 24/214 (11%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDKLKGKL-----RSLENQLYTCTQNYSPRGMKKVILEMEDQKH 218
+ QEL+ R Q+ ++ + L + E + C + + ++++ LE D +
Sbjct: 75 ENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEKLDLRS 134
Query: 219 SYEQKAKE------SLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRT 380
EQ KE Q++ E+K S + Q+ S L ++ + E +AL+ R
Sbjct: 135 QREQALKELEQLKKCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQALEGRIRA 194
Query: 381 LGTQHRELESQLHVLQSKLQGADSRDLQMNQ----ALRLLENEHQELQAKIARLQG---- 536
+ Q R+LES+ VLQ + + NQ ALR+ E + K+A+LQ
Sbjct: 195 VSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQLQAAYHQ 254
Query: 537 -----DRDLCSSDTQHLQDQLQKSEEEKLALVTK 623
D + SS L+D Q+ ++ + ALV K
Sbjct: 255 LFQDYDSHIKSSKGMQLEDLRQQLQQAEEALVAK 288
>ref|NP_034677.2| NF-kappa-B essential modulator isoform 1 [Mus musculus].
Length = 412
Score = 52.4 bits (124), Expect = 7e-07
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 24/214 (11%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDKLKGKL-----RSLENQLYTCTQNYSPRGMKKVILEMEDQKH 218
+ QEL+ R Q+ ++ + L + E + C + + ++++ LE D +
Sbjct: 57 ENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEKLDLRS 116
Query: 219 SYEQKAKE------SLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRT 380
EQ KE Q++ E+K S + Q+ S L ++ + E +AL+ R
Sbjct: 117 QREQALKELEQLKKCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKDRQALEGRIRA 176
Query: 381 LGTQHRELESQLHVLQSKLQGADSRDLQMNQ----ALRLLENEHQELQAKIARLQG---- 536
+ Q R+LES+ VLQ + + NQ ALR+ E + K+A+LQ
Sbjct: 177 VSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQLQAAYHQ 236
Query: 537 -----DRDLCSSDTQHLQDQLQKSEEEKLALVTK 623
D + SS L+D Q+ ++ + ALV K
Sbjct: 237 LFQDYDSHIKSSKGMQLEDLRQQLQQAEEALVAK 270
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,201,876
Number of extensions: 920858
Number of successful extensions: 6859
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 6595
Number of HSP's successfully gapped: 40
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013154
(1133 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079504.2| TRAF3-interacting JNK-activating modulator [Hom... 471 e-133
Alignment gi|NP_009090.2| sarcolemmal membrane-associated protein [Homo s... 100 2e-21
Alignment gi|NP_115627.6| coiled-coil domain-containing protein 88B [Homo... 56 5e-08
Alignment gi|XP_002343363.2| PREDICTED: golgin A6 family-like 2 [Homo sap... 55 9e-08
Alignment gi|NP_003557.2| early endosome antigen 1 [Homo sapiens]. 55 9e-08
Alignment gi|NP_689936.1| coiled-coil domain-containing protein 89 [Homo ... 55 9e-08
Alignment gi|NP_009045.2| TATA element modulatory factor [Homo sapiens]. 55 1e-07
Alignment gi|NP_937883.1| CAP-Gly domain-containing linker protein 1 isof... 54 2e-07
Alignment gi|NP_002947.1| CAP-Gly domain-containing linker protein 1 isof... 54 2e-07
Alignment gi|NP_002465.1| myosin-11 isoform SM1A [Homo sapiens]. 54 3e-07
>ref|NP_079504.2| TRAF3-interacting JNK-activating modulator [Homo sapiens].
Length = 551
Score = 471 bits (1213), Expect = e-133
Identities = 241/294 (81%), Positives = 253/294 (86%), Gaps = 1/294 (0%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
+GQLNEDKLKGKLRSLENQLYTCTQ YSP GMKKV+LEMEDQK+SYEQKAKESLQKVLEE
Sbjct: 234 KGQLNEDKLKGKLRSLENQLYTCTQKYSPWGMKKVLLEMEDQKNSYEQKAKESLQKVLEE 293
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
KM+AEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA
Sbjct: 294 KMNAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 353
Query: 447 DSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVTKV 626
DSRDLQMNQALR LENEHQ+LQAKI LQGDRDLCS DTQ LQDQL++SE EKL LVT+V
Sbjct: 354 DSRDLQMNQALRFLENEHQQLQAKIECLQGDRDLCSLDTQDLQDQLKRSEAEKLTLVTRV 413
Query: 627 XXXXXXXXXXXXXXXXXXKRLTKKDQALE-WSPKPSQNEVEPEGPGKEKDWDFRDQLQEK 803
K LTKKDQAL WSPK NEVEPEG GKEKDWD RDQLQ+K
Sbjct: 414 QQLQGLLQNQSLQLQEQEKLLTKKDQALPVWSPKSFPNEVEPEGTGKEKDWDLRDQLQKK 473
Query: 804 TLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELSLGQRPPPTRQCGRW 965
TLQL AKEKECR+LHSELDNLSDEYLSCLRKLQ CREEL+ Q+ PP RQCGRW
Sbjct: 474 TLQLQAKEKECRELHSELDNLSDEYLSCLRKLQHCREELNQSQQLPPRRQCGRW 527
>ref|NP_009090.2| sarcolemmal membrane-associated protein [Homo sapiens].
Length = 811
Score = 100 bits (250), Expect = 2e-21
Identities = 54/177 (30%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Frame = +3
Query: 87 QGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEE 266
Q ++ED+L +L + NQL C++N + ++K ++ +++ KH+YE AKESL++VL+E
Sbjct: 205 QALIDEDRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQE 264
Query: 267 KMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGA 446
K+ ++L +RSL+ E +C + E +E+ R L ++ +++ L KL+ A
Sbjct: 265 KIEVVRKLSEVERSLSNTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVA 324
Query: 447 DSRDLQMNQ-----------ALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQL 584
+ + ++ Q + +E + QELQAKI LQ D D + LQ+ L
Sbjct: 325 EGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDFTNERLTALQEHL 381
>ref|NP_115627.6| coiled-coil domain-containing protein 88B [Homo sapiens].
Length = 1476
Score = 56.2 bits (134), Expect = 5e-08
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 2/165 (1%)
Frame = +3
Query: 54 QKQELKPLDRHQGQLNEDK--LKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYE 227
Q L ++R L +K L+G+L+ LE QL + R + ++ Q+HS
Sbjct: 976 QNVRLIEVERSNAMLVAEKAALQGQLQHLEGQL----GSLQGRAQELLLQSQRAQEHSSR 1031
Query: 228 QKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELE 407
+A++S+ ++ +++ ++L+ + + A Q EE R Q +AL D + L R E
Sbjct: 1032 LQAEKSVLEIQGQEL--HRKLEVLEEEVRAARQSQEETRGQQQALLRDHKALAQLQRRQE 1089
Query: 408 SQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDR 542
++L L + RDL+ N +R LE H+ELQ + +LQ R
Sbjct: 1090 AELEGLLVR-----HRDLKAN--MRALELAHRELQGRHEQLQAQR 1127
>ref|XP_002343363.2| PREDICTED: golgin A6 family-like 2 [Homo sapiens].
Length = 701
Score = 55.5 bits (132), Expect = 9e-08
Identities = 52/303 (17%), Positives = 136/303 (44%), Gaps = 4/303 (1%)
Frame = +3
Query: 36 EAGRARQKQELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQK 215
E + ++QE K D+ + +D+ +LR E ++ R +K+ ++E +
Sbjct: 279 EQEKQMREQEQKMRDQEERMWEQDE---RLREKEERM---------REQEKMWEQVEKMR 326
Query: 216 HSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQH 395
+ + +E + EEKM E++++ ++ + E+ + WR Q E L+E + + Q
Sbjct: 327 EEKKMQEQEKKTRDQEEKMQEEERIREREKKMREEEETMKMWR-QEERLQEQEKQMWEQE 385
Query: 396 RELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQE----LQAKIARLQGDRDLCSSDT 563
++ Q + K+ + R + ++ LR E +E ++ + +++ + ++
Sbjct: 386 EKMRDQ----EQKMWDQEERMWEQDERLREKEERMREQKKMMREREKKMREEEEMMREQE 441
Query: 564 QHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEV 743
+ +Q+Q +K E++ K+ +++ ++++ + + Q +
Sbjct: 442 EKMQEQEEKMREQE----EKMWEQEEKMQEQEEKMWEQEEKMWEQEEEDKTQEEKMQEQQ 497
Query: 744 EPEGPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELS 923
E +E W+ +++QE+ ++ +E++ R+ ++ +E + + R +EE
Sbjct: 498 EKMQEQEEMMWEQEEKMQEQEEKMWEQEEKMREQEEKMRE-QEEKMQGQEEKMREQEEKM 556
Query: 924 LGQ 932
GQ
Sbjct: 557 QGQ 559
>ref|NP_003557.2| early endosome antigen 1 [Homo sapiens].
Length = 1411
Score = 55.5 bits (132), Expect = 9e-08
Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 17/267 (6%)
Frame = +3
Query: 108 KLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQ 287
KLK + L + T T+N + LE +KH+ E +K+++Q L +K QQ
Sbjct: 292 KLKSSVNELTQKNQTLTENLLKKEQDYTKLE---EKHNEESVSKKNIQATLHQKDLDCQQ 348
Query: 288 LQS----TQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSR 455
LQS ++ SL + E + LKE+ + T+++ L+++ LQ + + +
Sbjct: 349 LQSRLSASETSLHRIHVELSEKGEATQKLKEELSEVETKYQHLKAEFKQLQQQREEKEQH 408
Query: 456 DLQMNQAL-----RLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVT 620
LQ+ + +LLE E Q +A RL+ R L S + Q+ + KL+ +
Sbjct: 409 GLQLQSEINQLHSKLLETERQLGEAH-GRLKEQRQLSSEKLMDKEQQV-ADLQLKLSRLE 466
Query: 621 KVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSP----KPSQNEVEPE----GPGKEKDW 776
+ K+ ++ QAL+ S + +QN++E G +K
Sbjct: 467 EQLKEKVTNSTELQHQLDKTKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIGDKDQKIQ 526
Query: 777 DFRDQLQEKTLQLLAKEKECRDLHSEL 857
+ LQ+ + EKE DL++++
Sbjct: 527 NLEALLQKSKENISLLEKEREDLYAKI 553
Score = 51.2 bits (121), Expect = 2e-06
Identities = 74/319 (23%), Positives = 129/319 (40%), Gaps = 12/319 (3%)
Frame = +3
Query: 33 SEAGRARQK--QELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEME 206
SE G A QK +EL ++ L + + + + E + + + +LE E
Sbjct: 368 SEKGEATQKLKEELSEVETKYQHLKAEFKQLQQQREEKEQHGLQLQSEINQLHSKLLETE 427
Query: 207 DQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLG 386
Q + KE Q E+ M EQQ+ Q L+ E++ +E + L+
Sbjct: 428 RQLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTK 487
Query: 387 TQHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRD---LCSS 557
QH+E ++ +KL+ A + + Q LR + ++ Q++Q A LQ ++ L
Sbjct: 488 QQHQEQQALQQSTTAKLREAQN---DLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEK 544
Query: 558 DTQHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQN 737
+ + L ++Q E E L K T ++Q + + K +N
Sbjct: 545 EREDLYAKIQAGEGETAVL-----------------NQLQEKNHTLQEQVTQLTEK-LKN 586
Query: 738 EVEPEGPGKEKDWDFRDQLQEKTLQL-------LAKEKECRDLHSELDNLSDEYLSCLRK 896
+ E K+ + DQ+QE+ L L+ E +L+S+L N S E +S L
Sbjct: 587 QSESH---KQAQENLHDQVQEQKAHLRAAQDRVLSLETSVNELNSQL-NESKEKVSQLDI 642
Query: 897 LQRCREELSLGQRPPPTRQ 953
+ + EL L T Q
Sbjct: 643 QIKAKTELLLSAEAAKTAQ 661
>ref|NP_689936.1| coiled-coil domain-containing protein 89 [Homo sapiens].
Length = 374
Score = 55.5 bits (132), Expect = 9e-08
Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 7/212 (3%)
Frame = +3
Query: 3 SRLVAFLESRSEAGRAR-QKQELKPLDRHQGQLNE-DKLKGK---LRSLENQLYTCTQNY 167
S+L+ L+ RS+ R Q EL + + + E +KLK + R LE + T N+
Sbjct: 74 SQLICILKRRSDEALERCQILELLNAELEEKMMQEAEKLKAQGEYSRKLEERFMTLAANH 133
Query: 168 SPRGMKKVILEMEDQKHSYEQKAKESLQKV-LEEKMSAEQQLQSTQRSLALAEQKCEEWR 344
+++L +D+ S K +E +K+ LE Q L+ + + +CE
Sbjct: 134 ------ELMLRFKDEYKSENIKLREENEKLRLENSSLFSQALKDEEAKVLQLTVRCEALT 187
Query: 345 SQYEALKEDWRTLGTQHRELESQLHVLQSKLQGADSRDL-QMNQALRLLENEHQELQAKI 521
+ E LKE Q + E +L LQS+ +++ Q+ L+ L+ +HQ+ +I
Sbjct: 188 GELETLKERCAQDACQAQAREKELLELQSQQACTHTKETEQLRSQLQTLKQQHQQAVEQI 247
Query: 522 ARLQGDRDLCSSDTQHLQDQLQKSEEEKLALV 617
A+ + + SS +Q LQ +LQ EK L+
Sbjct: 248 AKAE---ETHSSLSQELQARLQTVTREKEELL 276
>ref|NP_009045.2| TATA element modulatory factor [Homo sapiens].
Length = 1093
Score = 55.1 bits (131), Expect = 1e-07
Identities = 78/302 (25%), Positives = 134/302 (44%), Gaps = 10/302 (3%)
Frame = +3
Query: 51 RQKQELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMEDQKH--SY 224
RQ+++L L Q++ D+L+ K RS++ L + + + + E Q+ S
Sbjct: 634 RQEKDLGRL-----QVDMDELEEKNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSR 688
Query: 225 EQKAKESLQKVLEEKMSAEQQLQSTQR----SLALAEQKCEEWRSQYEALKEDWRTLGTQ 392
E KAKE L LE+ +Q Q T L LA Q+ E Q A KED+
Sbjct: 689 EMKAKEELSAALEKAQEEARQQQETLAIQVGDLRLALQRTE----QAAARKEDY------ 738
Query: 393 HRELESQLHVLQSKLQGADSRDLQMNQAL----RLLENEHQELQAKIARLQGDRDLCSSD 560
L ++ LQ +LQ A++R+ +++Q++ R L + + LQA + +
Sbjct: 739 ---LRHEIGELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQATLGSQTSSWEKLE-- 793
Query: 561 TQHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNE 740
++L D+L +S+ A V + + L K ++ S SQN
Sbjct: 794 -KNLSDRLGESQTLLAAAVER-------------ERAATEELLANK---IQMSSMESQNS 836
Query: 741 VEPEGPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCREEL 920
+ ++++ F+ QL+ + +L E E EL+NL DEY +R L+ R+E
Sbjct: 837 LL-----RQENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEY---VRTLEETRKEK 888
Query: 921 SL 926
+L
Sbjct: 889 TL 890
>ref|NP_937883.1| CAP-Gly domain-containing linker protein 1 isoform b [Homo sapiens].
Length = 1392
Score = 54.3 bits (129), Expect = 2e-07
Identities = 79/327 (24%), Positives = 127/327 (38%), Gaps = 29/327 (8%)
Frame = +3
Query: 24 ESRSEAGRARQKQEL--KPLDRHQGQLNEDKLKG-----KLRSLENQLYTCTQNYSPRGM 182
E +SE + RQ+ E K + + + N + K +L+ E +L +N S
Sbjct: 739 EGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQ 798
Query: 183 KKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEAL 362
K LE E Q KE + EE +S ++ +Q T L E++ S E L
Sbjct: 799 VKETLEKE------LQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKL 852
Query: 363 KEDWRTLGTQHREL---ESQLHVLQSKLQ----------GADSRDL-QMNQALRLLENEH 500
+E+ + + RE E QL + KL+ G +S L +MN LRL E +
Sbjct: 853 RENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDV 912
Query: 501 QELQAKIARLQGD--------RDLCSSDTQHLQDQLQKSEEEKLALVTKVXXXXXXXXXX 656
+ELQ K+ + + D+ Q Q+ +K EEEK
Sbjct: 913 EELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEK----------------- 955
Query: 657 XXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGKEKDWDFRDQLQEKTLQLLAKEKEC 836
K L +K LE + S N+ + E+ E+ LQ L +K
Sbjct: 956 --------KELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNL--QKTL 1005
Query: 837 RDLHSELDNLSDEYLSCLRKLQRCREE 917
D +L +E L++L+ R++
Sbjct: 1006 LDTEDKLKGAREENSGLLQELEELRKQ 1032
Score = 52.0 bits (123), Expect = 1e-06
Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 12/289 (4%)
Frame = +3
Query: 105 DKLKGKLRSLEN-QLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAE 281
D+L+ K R +E QL N + ++K I ED EQ +E+ +K EEK E
Sbjct: 903 DELRLKERDVEELQLKLTKANENASFLQKSI---EDMTVKAEQSQQEAAKKHEEEKKELE 959
Query: 282 QQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRE----LESQLHVLQSKLQGAD 449
++L ++ + + +C+E +++YE + + T+H E L+ L + KL+GA
Sbjct: 960 RKLSDLEKKMETSHNQCQELKARYERATSETK---TKHEEILQNLQKTLLDTEDKLKGAR 1016
Query: 450 SRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVTKVX 629
+ + Q L E Q +AK A+ + D + +Q+ K + E LA +
Sbjct: 1017 EENSGLLQELE--ELRKQADKAKAAQ-------TAEDAMQIMEQMTKEKTETLASLEDT- 1066
Query: 630 XXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGKE-------KDWDFRD 788
+ K L+ + + VE KE K +FR
Sbjct: 1067 ----------------KQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRK 1110
Query: 789 QLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELSLGQR 935
+++ TL+ A +K +L L +E + +L R R+E++ Q+
Sbjct: 1111 EIE--TLKQAAAQKS-----QQLSALQEENVKLAEELGRSRDEVTSHQK 1152
>ref|NP_002947.1| CAP-Gly domain-containing linker protein 1 isoform a [Homo sapiens].
Length = 1427
Score = 54.3 bits (129), Expect = 2e-07
Identities = 79/327 (24%), Positives = 127/327 (38%), Gaps = 29/327 (8%)
Frame = +3
Query: 24 ESRSEAGRARQKQEL--KPLDRHQGQLNEDKLKG-----KLRSLENQLYTCTQNYSPRGM 182
E +SE + RQ+ E K + + + N + K +L+ E +L +N S
Sbjct: 774 EGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLSEVSQ 833
Query: 183 KKVILEMEDQKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEAL 362
K LE E Q KE + EE +S ++ +Q T L E++ S E L
Sbjct: 834 VKETLEKE------LQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKL 887
Query: 363 KEDWRTLGTQHREL---ESQLHVLQSKLQ----------GADSRDL-QMNQALRLLENEH 500
+E+ + + RE E QL + KL+ G +S L +MN LRL E +
Sbjct: 888 RENLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDV 947
Query: 501 QELQAKIARLQGD--------RDLCSSDTQHLQDQLQKSEEEKLALVTKVXXXXXXXXXX 656
+ELQ K+ + + D+ Q Q+ +K EEEK
Sbjct: 948 EELQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEK----------------- 990
Query: 657 XXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGKEKDWDFRDQLQEKTLQLLAKEKEC 836
K L +K LE + S N+ + E+ E+ LQ L +K
Sbjct: 991 --------KELERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNL--QKTL 1040
Query: 837 RDLHSELDNLSDEYLSCLRKLQRCREE 917
D +L +E L++L+ R++
Sbjct: 1041 LDTEDKLKGAREENSGLLQELEELRKQ 1067
Score = 52.0 bits (123), Expect = 1e-06
Identities = 68/289 (23%), Positives = 122/289 (42%), Gaps = 12/289 (4%)
Frame = +3
Query: 105 DKLKGKLRSLEN-QLYTCTQNYSPRGMKKVILEMEDQKHSYEQKAKESLQKVLEEKMSAE 281
D+L+ K R +E QL N + ++K I ED EQ +E+ +K EEK E
Sbjct: 938 DELRLKERDVEELQLKLTKANENASFLQKSI---EDMTVKAEQSQQEAAKKHEEEKKELE 994
Query: 282 QQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRE----LESQLHVLQSKLQGAD 449
++L ++ + + +C+E +++YE + + T+H E L+ L + KL+GA
Sbjct: 995 RKLSDLEKKMETSHNQCQELKARYERATSETK---TKHEEILQNLQKTLLDTEDKLKGAR 1051
Query: 450 SRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQHLQDQLQKSEEEKLALVTKVX 629
+ + Q L E Q +AK A+ + D + +Q+ K + E LA +
Sbjct: 1052 EENSGLLQELE--ELRKQADKAKAAQ-------TAEDAMQIMEQMTKEKTETLASLEDT- 1101
Query: 630 XXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEPEGPGKE-------KDWDFRD 788
+ K L+ + + VE KE K +FR
Sbjct: 1102 ----------------KQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRK 1145
Query: 789 QLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCREELSLGQR 935
+++ TL+ A +K +L L +E + +L R R+E++ Q+
Sbjct: 1146 EIE--TLKQAAAQKS-----QQLSALQEENVKLAEELGRSRDEVTSHQK 1187
>ref|NP_002465.1| myosin-11 isoform SM1A [Homo sapiens].
Length = 1972
Score = 53.5 bits (127), Expect = 3e-07
Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 19/310 (6%)
Frame = +3
Query: 48 ARQKQELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILE--MEDQKHS 221
AR K E + D + + LK +L + T + + R + +L+ ++++ S
Sbjct: 1133 ARNKAEKQKRDLGE---ELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDEETRS 1189
Query: 222 YEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRE 401
+E + +E QK + +QL+ +R+ A ++ + + L + R LG +E
Sbjct: 1190 HEAQVQEMRQKHAQAVEELTEQLEQFKRAKANLDKNKQTLEKENADLAGELRVLGQAKQE 1249
Query: 402 -------LESQLHVLQSKLQGADSRDLQMNQALRLLENEHQ-------ELQAKIARLQGD 539
LE+Q+ LQSK + ++N + L+NE + E + K +L D
Sbjct: 1250 VEHKKKKLEAQVQELQSKCSDGERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKD 1309
Query: 540 RDLCSSDTQHLQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWS 719
SS Q Q+ LQ+ +KL + TK+ +R + +DQ L+
Sbjct: 1310 VASLSSQLQDTQELLQEETRQKLNVSTKL-------------RQLEEERNSLQDQ-LDEE 1355
Query: 720 PKPSQNEVEPEGPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEY---LSCL 890
+ QN + D + +LQ+ + A E+ + E++NL+ +Y +
Sbjct: 1356 MEAKQNLERHISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQQYEEKAAAY 1415
Query: 891 RKLQRCREEL 920
KL++ + L
Sbjct: 1416 DKLEKTKNRL 1425
Score = 50.4 bits (119), Expect = 3e-06
Identities = 64/295 (21%), Positives = 123/295 (41%)
Frame = +3
Query: 30 RSEAGRARQKQELKPLDRHQGQLNEDKLKGKLRSLENQLYTCTQNYSPRGMKKVILEMED 209
+++ + + + ELK L++ QL E+K L+ QL T+ Y+ +V L +
Sbjct: 863 KTKERQQKAENELKELEQKHSQLTEEK-----NLLQEQLQAETELYAEAEEMRVRLAAKK 917
Query: 210 QKHSYEQKAKESLQKVLEEKMSAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGT 389
Q+ ++ ++ LEE+ QQLQ+ ++ +A EE + EA ++ L
Sbjct: 918 QE---LEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQ---KLQL 971
Query: 390 QHRELESQLHVLQSKLQGADSRDLQMNQALRLLENEHQELQAKIARLQGDRDLCSSDTQH 569
+ E+++ L+ ++ D ++ ++++ +LLE +L +A
Sbjct: 972 EKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLTTNLA--------------- 1016
Query: 570 LQDQLQKSEEEKLALVTKVXXXXXXXXXXXXXXXXXXKRLTKKDQALEWSPKPSQNEVEP 749
EEEK +TK+ RL K++++ + K +
Sbjct: 1017 -------EEEEKAKNLTKLKNKHESMISELEV------RLKKEEKSRQELEKLKRKLEGD 1063
Query: 750 EGPGKEKDWDFRDQLQEKTLQLLAKEKECRDLHSELDNLSDEYLSCLRKLQRCRE 914
E+ D + Q+ E +QL KE+E L + L L DE L++ RE
Sbjct: 1064 ASDFHEQIADLQAQIAELKMQLAKKEEE---LQAALARLDDEIAQKNNALKKIRE 1115
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,536,048
Number of extensions: 1109929
Number of successful extensions: 8193
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 7877
Number of HSP's successfully gapped: 45
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013154
(1133 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892325.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 153 2e-34
>gb|GL892325.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1200
Length = 32753
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 14 tgcatttctggagagcaggtcagaggcggggagagccaggcagaagcaggagctgaagcc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5275 tgcatttctggagagcaggtcagaggcggggagagccaggcagaagcaggagctgaagcc 5216
Query: 74 cttagaccggcaccagg 90
|||||||||||||||||
Sbjct: 5215 cttagaccggcaccagg 5199
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 86 ccagggccagcttaatgaagacaaattgaagggcaaactgagatccttagaaaaccagct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2533 ccagggccagcttaatgaagacaaattgaagggcaaactgagatccttagaaaaccagct 2474
Query: 146 gtacacctgtacccag 161
||||||||||||||||
Sbjct: 2473 gtacacctgtacccag 2458
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,662,766
Number of extensions: 298
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 2
Length of query: 1133
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1112
Effective length of database: 2,808,413,156
Effective search space: 3122955429472
Effective search space used: 3122955429472
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)