Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013159
(1416 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546540.2| PREDICTED: similar to Cullin-5 (CUL-5) (Vasopre... 511 e-145
Alignment gi|XP_856132.1| PREDICTED: similar to Cullin-1 (CUL-1) isoform ... 113 4e-25
Alignment gi|XP_856054.1| PREDICTED: similar to Cullin-1 (CUL-1) isoform ... 106 6e-23
Alignment gi|XP_848402.1| PREDICTED: similar to Cullin-1 (CUL-1) isoform ... 106 6e-23
Alignment gi|XP_532734.2| PREDICTED: similar to Cullin-1 (CUL-1) isoform ... 88 2e-17
Alignment gi|XP_856801.1| PREDICTED: similar to cullin 2 isoform 3 [Canis... 73 8e-13
Alignment gi|XP_856762.1| PREDICTED: similar to cullin 2 isoform 2 [Canis... 73 8e-13
Alignment gi|XP_535140.2| PREDICTED: similar to cullin 2 isoform 1 [Canis... 73 8e-13
Alignment gi|XP_864628.1| PREDICTED: similar to Cullin-4B (CUL-4B) isofor... 66 7e-11
Alignment gi|XP_851906.1| PREDICTED: similar to Cullin-4B (CUL-4B) isofor... 66 7e-11
>ref|XP_546540.2| PREDICTED: similar to Cullin-5 (CUL-5) (Vasopressin-activated
calcium-mobilizing receptor) (VACM-1) [Canis familiaris].
Length = 811
Score = 511 bits (1317), Expect = e-145
Identities = 254/267 (95%), Positives = 257/267 (96%)
Frame = +3
Query: 501 KNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKE 680
KNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKE
Sbjct: 39 KNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKE 98
Query: 681 DILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKK 860
DILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKK
Sbjct: 99 DILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKK 158
Query: 861 SNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNL 1040
S VEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNL
Sbjct: 159 STVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNL 218
Query: 1041 CSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALR 1220
CSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALR
Sbjct: 219 CSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALR 278
Query: 1221 YLETRRECNSVEAVSNFVIVYSLRLFK 1301
YLETRRECNSVEA+ + + FK
Sbjct: 279 YLETRRECNSVEALMECCVNALVTSFK 305
>ref|XP_856132.1| PREDICTED: similar to Cullin-1 (CUL-1) isoform 5 [Canis familiaris].
Length = 760
Score = 113 bits (283), Expect = 4e-25
Identities = 75/279 (26%), Positives = 139/279 (49%), Gaps = 23/279 (8%)
Frame = +3
Query: 486 TSNLLKNKGSLQ---FEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLW-----D 641
+SN +N L+ + WD +R + ++ ++S+ K ++ +L++ V+ C
Sbjct: 2 SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQ 61
Query: 642 DKGPAKIHQALKEDILEFIKQAQARVLSHQDDT---ALLKAYIVEWRKFFTQCDILPKPF 812
+G + L + + EF+K +L +D ++LK Y +W + +L
Sbjct: 62 ARGAGFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGIC 121
Query: 813 CQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEA 992
L + ++ + + + + L L TW + +F + ++ ++ +KL+ ER GE
Sbjct: 122 AYLNRHWVRRECDEGRKGIYE--IYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGET 179
Query: 993 FDSQLVIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDSTERFYRTQAPSYLQQN 1154
+++L+ GV +SYV L N +D L +Y+++FE +L TERFY ++ +LQQN
Sbjct: 180 INTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQN 239
Query: 1155 GVQNYMKYADAKLKEEEKRALRYL------ETRRECNSV 1253
V YMK A+A+L EE++R YL E R+C V
Sbjct: 240 PVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQV 278
>ref|XP_856054.1| PREDICTED: similar to Cullin-1 (CUL-1) isoform 4 [Canis familiaris].
Length = 757
Score = 106 bits (264), Expect = 6e-23
Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 39/295 (13%)
Frame = +3
Query: 486 TSNLLKNKGSLQ---FEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG-- 650
+SN +N L+ + WD +R + ++ ++S+ K ++ +L++ V+ C +
Sbjct: 2 SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQ 61
Query: 651 -------PAKIHQA------------LKEDILEFIKQAQARVLSHQDDT---ALLKAYIV 764
P+K + L + + EF+K +L +D ++LK Y
Sbjct: 62 ARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQ 121
Query: 765 EWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRL 944
+W + +L L + ++ + + + + L L TW + +F + ++
Sbjct: 122 QWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYE--IYSLALVTWRDCLFRPLNKQV 179
Query: 945 QDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDS 1106
++ +KL+ ER GE +++L+ GV +SYV L N +D L +Y+++FE +L
Sbjct: 180 TNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLAD 239
Query: 1107 TERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL------ETRRECNSV 1253
TERFY ++ +LQQN V YMK A+A+L EE++R YL E R+C V
Sbjct: 240 TERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQV 294
>ref|XP_848402.1| PREDICTED: similar to Cullin-1 (CUL-1) isoform 3 [Canis familiaris].
Length = 776
Score = 106 bits (264), Expect = 6e-23
Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 39/295 (13%)
Frame = +3
Query: 486 TSNLLKNKGSLQ---FEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG-- 650
+SN +N L+ + WD +R + ++ ++S+ K ++ +L++ V+ C +
Sbjct: 2 SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQ 61
Query: 651 -------PAKIHQA------------LKEDILEFIKQAQARVLSHQDDT---ALLKAYIV 764
P+K + L + + EF+K +L +D ++LK Y
Sbjct: 62 ARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQ 121
Query: 765 EWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRL 944
+W + +L L + ++ + + + + L L TW + +F + ++
Sbjct: 122 QWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYE--IYSLALVTWRDCLFRPLNKQV 179
Query: 945 QDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDS 1106
++ +KL+ ER GE +++L+ GV +SYV L N +D L +Y+++FE +L
Sbjct: 180 TNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLAD 239
Query: 1107 TERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL------ETRRECNSV 1253
TERFY ++ +LQQN V YMK A+A+L EE++R YL E R+C V
Sbjct: 240 TERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQV 294
>ref|XP_532734.2| PREDICTED: similar to Cullin-1 (CUL-1) isoform 1 [Canis familiaris].
Length = 759
Score = 88.2 bits (217), Expect = 2e-17
Identities = 73/295 (24%), Positives = 134/295 (45%), Gaps = 39/295 (13%)
Frame = +3
Query: 486 TSNLLKNKGSLQ---FEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG-- 650
+SN +N L+ + WD +R + ++ ++S+ K ++ +L++ V+ C +
Sbjct: 2 SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQ 61
Query: 651 -------PAKIHQA------------LKEDILEFIKQAQARVLSHQDDT---ALLKAYIV 764
P+K + L + + EF+K +L +D ++LK Y
Sbjct: 62 ARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQ 121
Query: 765 EWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRL 944
+W + +L L + ++ + + + I+S +
Sbjct: 122 QWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYE--------------IYS-----V 162
Query: 945 QDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDS 1106
++ +KL+ ER GE +++L+ GV +SYV L N +D L +Y+++FE +L
Sbjct: 163 TNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLAD 222
Query: 1107 TERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL------ETRRECNSV 1253
TERFY ++ +LQQN V YMK A+A+L EE++R YL E R+C V
Sbjct: 223 TERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQV 277
>ref|XP_856801.1| PREDICTED: similar to cullin 2 isoform 3 [Canis familiaris].
Length = 742
Score = 72.8 bits (177), Expect = 8e-13
Identities = 52/249 (20%), Positives = 115/249 (46%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W+ + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 8 VDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLEN 67
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 68 HVRHLHKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQFIKKNKLTEADLQY 125
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++ L ++ + +R GE + +++ GV
Sbjct: 126 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQTILIRMLLREIKNDRGGEDPNQKVIHGVI 185
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y++ FE +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 186 NSFVHVEQYKKKFPLKFYQEIFESPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 245
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 246 EEIRCRKYL 254
>ref|XP_856762.1| PREDICTED: similar to cullin 2 isoform 2 [Canis familiaris].
Length = 706
Score = 72.8 bits (177), Expect = 8e-13
Identities = 52/249 (20%), Positives = 115/249 (46%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W+ + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 8 VDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLEN 67
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 68 HVRHLHKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQFIKKNKLTEADLQY 125
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++ L ++ + +R GE + +++ GV
Sbjct: 126 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQTILIRMLLREIKNDRGGEDPNQKVIHGVI 185
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y++ FE +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 186 NSFVHVEQYKKKFPLKFYQEIFESPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 245
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 246 EEIRCRKYL 254
>ref|XP_535140.2| PREDICTED: similar to cullin 2 isoform 1 [Canis familiaris].
Length = 745
Score = 72.8 bits (177), Expect = 8e-13
Identities = 52/249 (20%), Positives = 115/249 (46%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W+ + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 8 VDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLEN 67
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 68 HVRHLHKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQFIKKNKLTEADLQY 125
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++ L ++ + +R GE + +++ GV
Sbjct: 126 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQTILIRMLLREIKNDRGGEDPNQKVIHGVI 185
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y++ FE +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 186 NSFVHVEQYKKKFPLKFYQEIFESPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 245
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 246 EEIRCRKYL 254
>ref|XP_864628.1| PREDICTED: similar to Cullin-4B (CUL-4B) isoform 3 [Canis
familiaris].
Length = 903
Score = 66.2 bits (160), Expect = 7e-11
Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 6/252 (2%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIK- 701
++ W ++ V + S+ K +L+ V +C + K A +++ L++ + IK
Sbjct: 201 DETWQKLKEAVEAIQNSTSI-KYNLEELYQAVENLCSY--KISANLYKQLRQICEDHIKA 257
Query: 702 ---QAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVE 872
Q + + D LK W+ Q ++ F L+ T + Q S S
Sbjct: 258 QIHQFREYFMDSLDSVLFLKKIDKCWQNHCRQMIMIRSIFLFLDRTYV-LQNSMLPS--- 313
Query: 873 DSIVRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCS 1046
+ + L+ + I S+ ++N+ D + L+ ER GEA D L+ S +++ S
Sbjct: 314 ---IWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLL----RSLLSMLS 366
Query: 1047 NPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL 1226
+ LQIY+D+FE+ +L+ T R Y + +Q+ V Y+ + + +L+EE R + YL
Sbjct: 367 D----LQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYL 422
Query: 1227 ETRRECNSVEAV 1262
+ + + + V
Sbjct: 423 DQTTQKSLIATV 434
>ref|XP_851906.1| PREDICTED: similar to Cullin-4B (CUL-4B) isoform 2 [Canis
familiaris].
Length = 898
Score = 66.2 bits (160), Expect = 7e-11
Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 6/252 (2%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIK- 701
++ W ++ V + S+ K +L+ V +C + K A +++ L++ + IK
Sbjct: 196 DETWQKLKEAVEAIQNSTSI-KYNLEELYQAVENLCSY--KISANLYKQLRQICEDHIKA 252
Query: 702 ---QAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVE 872
Q + + D LK W+ Q ++ F L+ T + Q S S
Sbjct: 253 QIHQFREYFMDSLDSVLFLKKIDKCWQNHCRQMIMIRSIFLFLDRTYV-LQNSMLPS--- 308
Query: 873 DSIVRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCS 1046
+ + L+ + I S+ ++N+ D + L+ ER GEA D L+ S +++ S
Sbjct: 309 ---IWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLL----RSLLSMLS 361
Query: 1047 NPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL 1226
+ LQIY+D+FE+ +L+ T R Y + +Q+ V Y+ + + +L+EE R + YL
Sbjct: 362 D----LQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYL 417
Query: 1227 ETRRECNSVEAV 1262
+ + + + V
Sbjct: 418 DQTTQKSLIATV 429
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,396,767
Number of extensions: 1133508
Number of successful extensions: 4775
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4718
Number of HSP's successfully gapped: 18
Length of query: 472
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 366
Effective length of database: 15,340,888
Effective search space: 5614765008
Effective search space used: 5614765008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013159
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013159
(1416 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002693012.1| PREDICTED: cullin 5 [Bos taurus]. 526 e-149
Alignment gi|XP_587459.3| PREDICTED: cullin 5, partial [Bos taurus]. 512 e-145
Alignment gi|NP_001180162.1| cullin 1 [Bos taurus]. 106 6e-23
Alignment gi|XP_002687079.1| PREDICTED: cullin 1 [Bos taurus]. 106 6e-23
Alignment gi|XP_002686790.1| PREDICTED: cullin 1-like [Bos taurus]. 102 6e-22
Alignment gi|XP_589507.1| PREDICTED: cullin 1-like isoform 1 [Bos taurus]. 102 6e-22
Alignment gi|XP_001788831.1| PREDICTED: hypothetical protein [Bos taurus]. 93 5e-19
Alignment gi|NP_001070377.1| cullin-2 [Bos taurus]. 72 2e-12
Alignment gi|XP_002699556.1| PREDICTED: cullin 4B [Bos taurus]. 64 3e-10
Alignment gi|XP_588651.3| PREDICTED: cullin 4B [Bos taurus]. 63 7e-10
>ref|XP_002693012.1| PREDICTED: cullin 5 [Bos taurus].
Length = 780
Score = 526 bits (1355), Expect = e-149
Identities = 262/274 (95%), Positives = 265/274 (96%)
Frame = +3
Query: 480 MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAK 659
MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAK
Sbjct: 1 MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAK 60
Query: 660 IHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMG 839
IHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMG
Sbjct: 61 IHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMG 120
Query: 840 KQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV 1019
KQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV
Sbjct: 121 KQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV 180
Query: 1020 RESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
RESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE
Sbjct: 181 RESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 240
Query: 1200 EEKRALRYLETRRECNSVEAVSNFVIVYSLRLFK 1301
EEKRALRYLETRRECNSVEA+ + + FK
Sbjct: 241 EEKRALRYLETRRECNSVEALMECCVNALVTSFK 274
>ref|XP_587459.3| PREDICTED: cullin 5, partial [Bos taurus].
Length = 772
Score = 512 bits (1318), Expect = e-145
Identities = 254/266 (95%), Positives = 257/266 (96%)
Frame = +3
Query: 504 NKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKED 683
NKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKED
Sbjct: 1 NKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKED 60
Query: 684 ILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS 863
ILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS
Sbjct: 61 ILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS 120
Query: 864 NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLC 1043
NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLC
Sbjct: 121 NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLC 180
Query: 1044 SNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRY 1223
SNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRY
Sbjct: 181 SNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRY 240
Query: 1224 LETRRECNSVEAVSNFVIVYSLRLFK 1301
LETRRECNSVEA+ + + FK
Sbjct: 241 LETRRECNSVEALMECCVNALVTSFK 266
>ref|NP_001180162.1| cullin 1 [Bos taurus].
Length = 776
Score = 106 bits (264), Expect = 6e-23
Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 39/295 (13%)
Frame = +3
Query: 486 TSNLLKNKGSLQ---FEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG-- 650
+SN +N L+ + WD +R + ++ ++S+ K ++ +L++ V+ C +
Sbjct: 2 SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQ 61
Query: 651 -------PAKIHQA------------LKEDILEFIKQAQARVLSHQDDT---ALLKAYIV 764
P+K + L + + EF+K +L +D ++LK Y
Sbjct: 62 ARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQ 121
Query: 765 EWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRL 944
+W + +L L + ++ + + + + L L TW + +F + ++
Sbjct: 122 QWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYE--IYSLALVTWRDCLFRPLNKQV 179
Query: 945 QDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDS 1106
++ +KL+ ER GE +++L+ GV +SYV L N +D L +Y+++FE +L
Sbjct: 180 TNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLAD 239
Query: 1107 TERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL------ETRRECNSV 1253
TERFY ++ +LQQN V YMK A+A+L EE++R YL E R+C V
Sbjct: 240 TERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQV 294
>ref|XP_002687079.1| PREDICTED: cullin 1 [Bos taurus].
Length = 776
Score = 106 bits (264), Expect = 6e-23
Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 39/295 (13%)
Frame = +3
Query: 486 TSNLLKNKGSLQ---FEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG-- 650
+SN +N L+ + WD +R + ++ ++S+ K ++ +L++ V+ C +
Sbjct: 2 SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQ 61
Query: 651 -------PAKIHQA------------LKEDILEFIKQAQARVLSHQDDT---ALLKAYIV 764
P+K + L + + EF+K +L +D ++LK Y
Sbjct: 62 ARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQ 121
Query: 765 EWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRL 944
+W + +L L + ++ + + + + L L TW + +F + ++
Sbjct: 122 QWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYE--IYSLALVTWRDCLFRPLNKQV 179
Query: 945 QDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDS 1106
++ +KL+ ER GE +++L+ GV +SYV L N +D L +Y+++FE +L
Sbjct: 180 TNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLAD 239
Query: 1107 TERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL------ETRRECNSV 1253
TERFY ++ +LQQN V YMK A+A+L EE++R YL E R+C V
Sbjct: 240 TERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQV 294
>ref|XP_002686790.1| PREDICTED: cullin 1-like [Bos taurus].
Length = 767
Score = 102 bits (255), Expect = 6e-22
Identities = 73/274 (26%), Positives = 137/274 (50%), Gaps = 28/274 (10%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLW---DDKGPAKIHQALKED- 683
L ++ WD +R + ++ ++S+ K ++ +L++ ++ CL+ + +K Q L+ED
Sbjct: 15 LGIDELWDNIRAGIQQVYARQSMVKSRYIELYTLLYNHCLYVSPQAQTQSKKGQKLREDK 74
Query: 684 ---------ILEFIKQAQARVLSHQDDT---ALLKAYIVEWRKFFTQCDILPKPFCQLEI 827
I EF+K + +D +LK Y +W + +L +L
Sbjct: 75 TVGFELYKRIKEFLKNHLTNLPKDGEDLMDIGILKFYTQQWEDYQFSSKVLNGICARLNK 134
Query: 828 TLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQL 1007
L+ +N+ NV + + L + TW + +F + ++ ++ +KL+ ER GE+ +++L
Sbjct: 135 HLLNST-NNEGHNVCE--IYSLAMVTWRDCLFRPLNKQVTNAVLKLIEKERNGESINTRL 191
Query: 1008 VIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNY 1169
+ G +SY+ L N +++ L +Y++ FE +L TER+Y ++ LQQN V Y
Sbjct: 192 ISGAIQSYLELGVNEDNQFEESPMLTVYKEAFESQFLADTERYYTRKSTELLQQNPVTEY 251
Query: 1170 MKYADAKLKEEEKRALRYL------ETRRECNSV 1253
MK +A L EE +RA YL + R+C V
Sbjct: 252 MKKVEALLLEERRRARVYLHQSSKGKLARKCRQV 285
>ref|XP_589507.1| PREDICTED: cullin 1-like isoform 1 [Bos taurus].
Length = 767
Score = 102 bits (255), Expect = 6e-22
Identities = 73/274 (26%), Positives = 137/274 (50%), Gaps = 28/274 (10%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLW---DDKGPAKIHQALKED- 683
L ++ WD +R + ++ ++S+ K ++ +L++ ++ CL+ + +K Q L+ED
Sbjct: 15 LGIDELWDNIRAGIQQVYARQSMVKSRYIELYTLLYNHCLYVSPQAQTQSKKGQKLREDK 74
Query: 684 ---------ILEFIKQAQARVLSHQDDT---ALLKAYIVEWRKFFTQCDILPKPFCQLEI 827
I EF+K + +D +LK Y +W + +L +L
Sbjct: 75 TVGFELYKRIKEFLKNHLTNLPKDGEDLMDIGILKFYTQQWEDYQFSSKVLNGICARLNK 134
Query: 828 TLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQL 1007
L+ +N+ NV + + L + TW + +F + ++ ++ +KL+ ER GE+ +++L
Sbjct: 135 HLLNST-NNEGHNVCE--IYSLAMVTWRDCLFRPLNKQVTNAVLKLIEKERNGESINTRL 191
Query: 1008 VIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNY 1169
+ G +SY+ L N +++ L +Y++ FE +L TER+Y ++ LQQN V Y
Sbjct: 192 ISGAIQSYLELGVNEDNQFEESPMLTVYKEAFESQFLADTERYYTRKSTELLQQNPVTEY 251
Query: 1170 MKYADAKLKEEEKRALRYL------ETRRECNSV 1253
MK +A L EE +RA YL + R+C V
Sbjct: 252 MKKVEALLLEERRRARVYLHQSSKGKLARKCRQV 285
>ref|XP_001788831.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 272
Score = 93.2 bits (230), Expect = 5e-19
Identities = 57/123 (46%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Frame = +2
Query: 137 GATTKANPKEGVGLWGRCFLFQFRSAPVTVSPFAVCGSRGVCMRSFVRGSSGDHVGESGR 316
GATT+A+ KE G W RCFLF+F+ ++SPFA S VCM S V G GDHVG R
Sbjct: 150 GATTEAHLKEWGGSWSRCFLFRFQVGSCSLSPFAAAVSLSVCMSSLVWGGPGDHVGREER 209
Query: 317 KLQLPEGRSARSARR-----LXXXXXXXXXXXXXXXXXXXLTRSAAKSRAVSRESKLKEH 481
EGR R L RSA KSRAVSRESKLKEH
Sbjct: 210 GSSGSEGRGQRCVHAGAHLIHSAGPGPPRPRWETRACSSGLARSATKSRAVSRESKLKEH 269
Query: 482 GDV 490
GDV
Sbjct: 270 GDV 272
>ref|NP_001070377.1| cullin-2 [Bos taurus].
Length = 745
Score = 71.6 bits (174), Expect = 2e-12
Identities = 52/249 (20%), Positives = 114/249 (45%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 8 VDFDETWSKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLEN 67
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 68 HVRHLHKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQFIKKNKLTEADLQY 125
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++ L ++ + +R GE + +++ GV
Sbjct: 126 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQAILIRMLLREIKNDRGGEDPNQKVIHGVI 185
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y++ FE +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 186 NSFVHVEQYKKKFPLKFYQEIFESPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 245
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 246 EEIRCRKYL 254
>ref|XP_002699556.1| PREDICTED: cullin 4B [Bos taurus].
Length = 896
Score = 64.3 bits (155), Expect = 3e-10
Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 3/249 (1%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQ 704
++ W ++ V + S+ K +L+ V +C + K A +++ L++ + IK
Sbjct: 197 DETWQKLKEAVEAIQNSTSI-KYNLEELYQAVENLCSY--KISANLYKQLRQICEDHIKA 253
Query: 705 AQARVLSHQDDTAL-LKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSI 881
+ D+ L LK W+ Q ++ F L+ T + Q S S
Sbjct: 254 QIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYV-LQNSMLPS------ 306
Query: 882 VRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPE 1055
+ + L+ + I S+ ++N+ D + L+ ER GEA D L+ S +++ S+
Sbjct: 307 IWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLL----RSLLSMLSD-- 360
Query: 1056 DKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETR 1235
LQIY+D+FE+ +L+ T R Y + +Q+ V Y+ + + +L+EE R + YL+
Sbjct: 361 --LQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQT 418
Query: 1236 RECNSVEAV 1262
+ + + V
Sbjct: 419 TQKSLIATV 427
>ref|XP_588651.3| PREDICTED: cullin 4B [Bos taurus].
Length = 896
Score = 62.8 bits (151), Expect = 7e-10
Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 6/226 (2%)
Frame = +3
Query: 603 DLFSDVHAVCLWDDKGPAKIHQALKEDILE---FIKQAQARVLSHQDDTALLKA-YIVEW 770
+L+ + +C +D A+IHQ +ED L+ F+K+ +H ++++ ++
Sbjct: 238 NLYKQLRQIC--EDHIKAQIHQ-FREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLD 294
Query: 771 RKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSN--IKNRL 944
R + Q +LP C + MG L+ + I S+ ++N+
Sbjct: 295 RTYVLQNSMLP---CHWD---MG-------------------LELFRAHIISDQKVQNKT 329
Query: 945 QDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYR 1124
D + L+ ER GEA D L+ S +++ S+ LQIY+D+FE+ +L+ T R Y
Sbjct: 330 IDGILLLIERERNGEAIDRSLL----RSLLSMLSD----LQIYQDSFEQRFLEETNRLYA 381
Query: 1125 TQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEAV 1262
+ +Q+ V Y+ + + +L+EE R + YL+ + + + V
Sbjct: 382 AEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATV 427
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,520,547
Number of extensions: 1100615
Number of successful extensions: 4348
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4314
Number of HSP's successfully gapped: 17
Length of query: 472
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 366
Effective length of database: 14,174,046
Effective search space: 5187700836
Effective search space used: 5187700836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013159
(1416 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357323.1| PREDICTED: cullin-5-like [Sus scrofa]. 526 e-149
Alignment gi|XP_003130332.2| PREDICTED: LOW QUALITY PROTEIN: cullin-1-lik... 106 4e-23
Alignment gi|XP_003130857.2| PREDICTED: cullin-2 [Sus scrofa]. 72 6e-13
Alignment gi|XP_003135381.1| PREDICTED: cullin-4B [Sus scrofa]. 64 2e-10
Alignment gi|XP_003131149.1| PREDICTED: cullin-4A [Sus scrofa]. 59 7e-09
Alignment gi|XP_003361874.1| PREDICTED: cullin-3-like [Sus scrofa]. 49 7e-06
Alignment gi|XP_003133733.2| PREDICTED: cullin-3-like [Sus scrofa]. 49 7e-06
>ref|XP_003357323.1| PREDICTED: cullin-5-like [Sus scrofa].
Length = 780
Score = 526 bits (1355), Expect = e-149
Identities = 262/274 (95%), Positives = 265/274 (96%)
Frame = +3
Query: 480 MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAK 659
MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAK
Sbjct: 1 MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAK 60
Query: 660 IHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMG 839
IHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMG
Sbjct: 61 IHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMG 120
Query: 840 KQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV 1019
KQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV
Sbjct: 121 KQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV 180
Query: 1020 RESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
RESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE
Sbjct: 181 RESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 240
Query: 1200 EEKRALRYLETRRECNSVEAVSNFVIVYSLRLFK 1301
EEKRALRYLETRRECNSVEA+ + + FK
Sbjct: 241 EEKRALRYLETRRECNSVEALMECCVNALVTSFK 274
>ref|XP_003130332.2| PREDICTED: LOW QUALITY PROTEIN: cullin-1-like [Sus scrofa].
Length = 776
Score = 106 bits (264), Expect = 4e-23
Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 39/295 (13%)
Frame = +3
Query: 486 TSNLLKNKGSLQ---FEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG-- 650
+SN +N L+ + WD +R + ++ ++S+ K ++ +L++ V+ C +
Sbjct: 2 SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQ 61
Query: 651 -------PAKIHQA------------LKEDILEFIKQAQARVLSHQDDT---ALLKAYIV 764
P+K + L + + EF+K +L +D ++LK Y
Sbjct: 62 ARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQ 121
Query: 765 EWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRL 944
+W + +L L + ++ + + + + L L TW + +F + ++
Sbjct: 122 QWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYE--IYSLALVTWRDCLFRPLNKQV 179
Query: 945 QDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDS 1106
++ +KL+ ER GE +++L+ GV +SYV L N +D L +Y+++FE +L
Sbjct: 180 TNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLAD 239
Query: 1107 TERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL------ETRRECNSV 1253
TERFY ++ +LQQN V YMK A+A+L EE++R YL E R+C V
Sbjct: 240 TERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQV 294
>ref|XP_003130857.2| PREDICTED: cullin-2 [Sus scrofa].
Length = 745
Score = 72.4 bits (176), Expect = 6e-13
Identities = 52/249 (20%), Positives = 115/249 (46%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W+ + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 8 VDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLEN 67
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 68 HVRHLHKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQFIKKNKLTEADLQY 125
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++ L ++ + +R GE + +++ GV
Sbjct: 126 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQTILIRMLLREIKNDRGGEDPNQKVIHGVI 185
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y++ FE +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 186 NSFVHVEQYKKKFPLKFYQEIFESPFLAETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 245
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 246 EEIRCRKYL 254
>ref|XP_003135381.1| PREDICTED: cullin-4B [Sus scrofa].
Length = 897
Score = 64.3 bits (155), Expect = 2e-10
Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 3/249 (1%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQ 704
++ W ++ V + S+ K +L+ V +C + K A +++ L++ + IK
Sbjct: 198 DETWQKLKEAVEAIQNSTSI-KYNLEELYQAVENLCSY--KISANLYKQLRQICEDHIKA 254
Query: 705 AQARVLSHQDDTAL-LKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSI 881
+ D+ L LK W+ Q ++ F L+ T + Q S S
Sbjct: 255 QIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYV-LQNSMLPS------ 307
Query: 882 VRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPE 1055
+ + L+ + I S+ ++N+ D + L+ ER GEA D L+ S +++ S+
Sbjct: 308 IWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLL----RSLLSMLSD-- 361
Query: 1056 DKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETR 1235
LQIY+D+FE+ +L+ T R Y + +Q+ V Y+ + + +L+EE R + YL+
Sbjct: 362 --LQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQT 419
Query: 1236 RECNSVEAV 1262
+ + + V
Sbjct: 420 TQKSLIATV 428
>ref|XP_003131149.1| PREDICTED: cullin-4A [Sus scrofa].
Length = 761
Score = 58.9 bits (141), Expect = 7e-09
Identities = 54/244 (22%), Positives = 111/244 (45%), Gaps = 9/244 (3%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQ 704
+D W + V K ++ + + +L+ V +C K ++Q L+E +
Sbjct: 62 QDTWHKLHEAV-KAIQSSTSIRYNLEELYQAVENLC--SHKVAPTLYQQLREACESHV-- 116
Query: 705 AQARVLSHQDDTA----LLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVE 872
QA++L ++D+ LK W+ Q ++ F L+ T + ++
Sbjct: 117 -QAQILQFREDSLDSVFFLKKINTCWQDHCRQMIMVRSIFLFLDRTYV----------LQ 165
Query: 873 DSIVRKLM---LDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVN 1037
+S++ + L+ + + S+ ++ + D + L+ ER GEA D L+ G+ +
Sbjct: 166 NSLLPSIWDMGLELFRSHVISDRMVQTKTIDGILLLIARERSGEAVDRSLLRGL----LG 221
Query: 1038 LCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRAL 1217
+ S+ LQ+Y+D+FE +L+ T Y + +Q+ V Y+ + +L+EE R +
Sbjct: 222 MLSD----LQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVI 277
Query: 1218 RYLE 1229
YL+
Sbjct: 278 TYLD 281
>ref|XP_003361874.1| PREDICTED: cullin-3-like [Sus scrofa].
Length = 737
Score = 48.9 bits (115), Expect = 7e-06
Identities = 33/143 (23%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Frame = +3
Query: 855 KKSNVEDSIVRKLMLDTWNESI--FSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRES 1028
+++NVE+ V L L + + + + I++ L+ + + ++ ER GE D +R +
Sbjct: 101 QQNNVEN--VYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRG---AIRNA 155
Query: 1029 YVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEK 1208
L + +Y ++FE +L+ + F++ ++ +L +N Y+K +A++ EE +
Sbjct: 156 CQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIE 215
Query: 1209 RALRYLETRRECNSVEAVSNFVI 1277
R + L+ E V+ V +I
Sbjct: 216 RVMHCLDKSTEEPIVKVVERELI 238
>ref|XP_003133733.2| PREDICTED: cullin-3-like [Sus scrofa].
Length = 552
Score = 48.9 bits (115), Expect = 7e-06
Identities = 33/143 (23%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Frame = +3
Query: 855 KKSNVEDSIVRKLMLDTWNESI--FSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRES 1028
+++NVE+ V L L + + + + I++ L+ + + ++ ER GE D +R +
Sbjct: 65 QQNNVEN--VYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRG---AIRNA 119
Query: 1029 YVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEK 1208
L + +Y ++FE +L+ + F++ ++ +L +N Y+K +A++ EE +
Sbjct: 120 CQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIE 179
Query: 1209 RALRYLETRRECNSVEAVSNFVI 1277
R + L+ E V+ V +I
Sbjct: 180 RVMHCLDKSTEEPIVKVVERELI 202
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,241,996
Number of extensions: 704607
Number of successful extensions: 2890
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2881
Number of HSP's successfully gapped: 7
Length of query: 472
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 369
Effective length of database: 8,779,541
Effective search space: 3239650629
Effective search space used: 3239650629
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013159
(1416 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082083.2| cullin-5 isoform 1 [Mus musculus]. 517 e-154
Alignment gi|NP_001155090.1| cullin-5 isoform 2 [Mus musculus]. 465 e-139
Alignment gi|NP_036172.1| cullin-1 [Mus musculus]. 106 5e-23
Alignment gi|NP_083678.2| cullin-2 [Mus musculus]. 70 3e-12
Alignment gi|NP_001103612.1| cullin 4B [Mus musculus]. 61 2e-09
Alignment gi|NP_082564.3| cullin 4B [Mus musculus]. 61 2e-09
Alignment gi|NP_666319.2| cullin-4A [Mus musculus]. 57 5e-08
Alignment gi|NP_057925.1| cullin-3 [Mus musculus]. 50 3e-06
>ref|NP_082083.2| cullin-5 isoform 1 [Mus musculus].
Length = 855
Score = 517 bits (1332), Expect(3) = e-154
Identities = 256/275 (93%), Positives = 263/275 (95%)
Frame = +3
Query: 477 NMATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPA 656
NMATSNLLKNKGSLQFEDKWDFM PIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG +
Sbjct: 75 NMATSNLLKNKGSLQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSS 134
Query: 657 KIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLM 836
KIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLE+TL+
Sbjct: 135 KIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLL 194
Query: 837 GKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIG 1016
GKQ SNKKSN+EDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIG
Sbjct: 195 GKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIG 254
Query: 1017 VRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLK 1196
VRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLK
Sbjct: 255 VRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLK 314
Query: 1197 EEEKRALRYLETRRECNSVEAVSNFVIVYSLRLFK 1301
EEEKRALRYLETRRECNSVEA+ + + FK
Sbjct: 315 EEEKRALRYLETRRECNSVEALMECCVNALVTSFK 349
Score = 44.3 bits (103), Expect(3) = e-154
Identities = 22/30 (73%), Positives = 22/30 (73%)
Frame = +1
Query: 385 RWPRWEPGLQSRPDPERRQVSRRLARVQVE 474
R P PGL RP PERRQVS RLARVQVE
Sbjct: 45 RGPAGNPGLSRRPGPERRQVSPRLARVQVE 74
Score = 26.9 bits (58), Expect(3) = e-154
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 263 MRSFVRGSSGDHVGESGRKLQLPEGRSARSARR 361
MRS GDHV + +LP SA +ARR
Sbjct: 1 MRSLAWAGRGDHVAGKPEEARLPGTSSALTARR 33
>ref|NP_001155090.1| cullin-5 isoform 2 [Mus musculus].
Length = 828
Score = 465 bits (1196), Expect(3) = e-139
Identities = 227/234 (97%), Positives = 231/234 (98%)
Frame = +3
Query: 477 NMATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPA 656
NMATSNLLKNKGSLQFEDKWDFM PIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG +
Sbjct: 75 NMATSNLLKNKGSLQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSS 134
Query: 657 KIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLM 836
KIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLE+TL+
Sbjct: 135 KIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLL 194
Query: 837 GKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIG 1016
GKQ SNKKSN+EDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIG
Sbjct: 195 GKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIG 254
Query: 1017 VRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKY 1178
VRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKY
Sbjct: 255 VRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKY 308
Score = 44.3 bits (103), Expect(3) = e-139
Identities = 22/30 (73%), Positives = 22/30 (73%)
Frame = +1
Query: 385 RWPRWEPGLQSRPDPERRQVSRRLARVQVE 474
R P PGL RP PERRQVS RLARVQVE
Sbjct: 45 RGPAGNPGLSRRPGPERRQVSPRLARVQVE 74
Score = 26.9 bits (58), Expect(3) = e-139
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 263 MRSFVRGSSGDHVGESGRKLQLPEGRSARSARR 361
MRS GDHV + +LP SA +ARR
Sbjct: 1 MRSLAWAGRGDHVAGKPEEARLPGTSSALTARR 33
>ref|NP_036172.1| cullin-1 [Mus musculus].
Length = 776
Score = 106 bits (264), Expect = 5e-23
Identities = 76/295 (25%), Positives = 141/295 (47%), Gaps = 39/295 (13%)
Frame = +3
Query: 486 TSNLLKNKGSLQ---FEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG-- 650
+SN +N L+ + WD +R + ++ ++S+ K ++ +L++ V+ C +
Sbjct: 2 SSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQ 61
Query: 651 -------PAKIHQA------------LKEDILEFIKQAQARVLSHQDDT---ALLKAYIV 764
P+K + L + + EF+K +L +D ++LK Y
Sbjct: 62 ARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQ 121
Query: 765 EWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRL 944
+W + +L L + ++ + + + + L L TW + +F + ++
Sbjct: 122 QWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYE--IYSLALVTWRDCLFRPLNKQV 179
Query: 945 QDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDS 1106
++ +KL+ ER GE +++L+ GV +SYV L N +D L +Y+++FE +L
Sbjct: 180 TNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLAD 239
Query: 1107 TERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL------ETRRECNSV 1253
TERFY ++ +LQQN V YMK A+A+L EE++R YL E R+C V
Sbjct: 240 TERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQV 294
>ref|NP_083678.2| cullin-2 [Mus musculus].
Length = 745
Score = 70.5 bits (171), Expect = 3e-12
Identities = 52/249 (20%), Positives = 114/249 (45%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W+ + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 8 VDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYAETKIFLES 67
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 68 HVRHLYKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQYIKKNKLTEADIQY 125
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++N L ++ + +R GE + +++ GV
Sbjct: 126 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQNILIRMLLREIKNDRGGEDPNQKVIHGVI 185
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y+ F +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 186 NSFVHVEQYKKKFPLKFYQGIFVSPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 245
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 246 EEIRCRKYL 254
>ref|NP_001103612.1| cullin 4B [Mus musculus].
Length = 970
Score = 61.2 bits (147), Expect = 2e-09
Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 3/249 (1%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQ 704
++ W ++ V + S+ K +L+ V +C K A +++ L++ + IK
Sbjct: 271 DETWQKLKEAVEAIQNSTSI-KYNLEELYQAVENLC--SHKISANLYKQLRQICEDHIKA 327
Query: 705 AQARVLSHQDDTAL-LKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSI 881
+ D+ L LK W+ Q ++ F L+ T + Q S S
Sbjct: 328 QIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYV-LQNSMLPS------ 380
Query: 882 VRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPE 1055
+ + L+ + I S+ ++ + D + L+ ER GEA D L+ S +++ S+
Sbjct: 381 IWDMGLELFRAHIISDQKVQTKTIDGILLLIERERNGEAIDRSLL----RSLLSMLSD-- 434
Query: 1056 DKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETR 1235
LQIY+D+FE+ +L T R Y + +Q+ V Y+ + + +L+EE R + YL+
Sbjct: 435 --LQIYQDSFEQQFLQETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQT 492
Query: 1236 RECNSVEAV 1262
+ + + +V
Sbjct: 493 TQKSLIASV 501
>ref|NP_082564.3| cullin 4B [Mus musculus].
Length = 970
Score = 61.2 bits (147), Expect = 2e-09
Identities = 59/249 (23%), Positives = 114/249 (45%), Gaps = 3/249 (1%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQ 704
++ W ++ V + S+ K +L+ V +C K A +++ L++ + IK
Sbjct: 271 DETWQKLKEAVEAIQNSTSI-KYNLEELYQAVENLC--SHKISANLYKQLRQICEDHIKA 327
Query: 705 AQARVLSHQDDTAL-LKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSI 881
+ D+ L LK W+ Q ++ F L+ T + Q S S
Sbjct: 328 QIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYV-LQNSMLPS------ 380
Query: 882 VRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPE 1055
+ + L+ + I S+ ++ + D + L+ ER GEA D L+ S +++ S+
Sbjct: 381 IWDMGLELFRAHIISDQKVQTKTIDGILLLIERERNGEAIDRSLL----RSLLSMLSD-- 434
Query: 1056 DKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETR 1235
LQIY+D+FE+ +L T R Y + +Q+ V Y+ + + +L+EE R + YL+
Sbjct: 435 --LQIYQDSFEQQFLQETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQT 492
Query: 1236 RECNSVEAV 1262
+ + + +V
Sbjct: 493 TQKSLIASV 501
>ref|NP_666319.2| cullin-4A [Mus musculus].
Length = 759
Score = 56.6 bits (135), Expect = 5e-08
Identities = 55/241 (22%), Positives = 110/241 (45%), Gaps = 6/241 (2%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQ 704
+D W + V K ++ + + +L+ V +C K +++ L++ + +
Sbjct: 60 QDTWRKLHEAV-KAIQSSTSIRYNLEELYQAVENLC--SHKVSPTLYKQLRQVCEDHV-- 114
Query: 705 AQARVLSHQDDTA----LLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVE 872
QA++L ++D+ LK W+ Q ++ F L+ T + Q S S
Sbjct: 115 -QAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYV-LQNSMLPS--- 169
Query: 873 DSIVRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCS 1046
+ + L+ + I S+ ++++ D + L+ ER GEA D L+ S +++ S
Sbjct: 170 ---IWDMGLELFRNHIISDRMVQSKTIDGILLLIGRERSGEAVDRSLL----RSLLSMLS 222
Query: 1047 NPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL 1226
+ LQ+Y+D+FE +L+ T Y + +Q V Y+ + +L+EE R + YL
Sbjct: 223 D----LQVYKDSFELKFLEETNCLYAAEGQRLMQDREVPEYLNHVSKRLEEEADRVITYL 278
Query: 1227 E 1229
+
Sbjct: 279 D 279
>ref|NP_057925.1| cullin-3 [Mus musculus].
Length = 768
Score = 50.4 bits (119), Expect = 3e-06
Identities = 49/251 (19%), Positives = 117/251 (46%), Gaps = 3/251 (1%)
Frame = +3
Query: 534 WDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILE-FIKQAQ 710
WD ++ + ++ R+ + + + +L+ + + + L K K++ L+E + E I + +
Sbjct: 34 WDLLKNAIQEIQRKNN-SGLSFEELYRNAYTMVL--HKHGEKLYTGLREVVTEHLINKVR 90
Query: 711 ARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSIVRK 890
VL+ ++ L+ W T ++ ++ + +++NVE+ V
Sbjct: 91 EDVLNSLNNN-FLQTLNQAWNDHQTAMVMIRDILMYMDRVYV------QQNNVEN--VYN 141
Query: 891 LMLDTWNESI--FSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKL 1064
L L + + + + I++ L+ + + ++ ER GE D +R + L +
Sbjct: 142 LGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRG---AIRNACQMLMILGLEGR 198
Query: 1065 QIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRREC 1244
+Y ++FE +L+ + F++ ++ +L +N Y+K +A++ EE +R + L+ E
Sbjct: 199 SVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEE 258
Query: 1245 NSVEAVSNFVI 1277
V+ V +I
Sbjct: 259 PIVKVVERELI 269
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,741,322
Number of extensions: 941329
Number of successful extensions: 3374
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3364
Number of HSP's successfully gapped: 12
Length of query: 472
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 367
Effective length of database: 12,463,779
Effective search space: 4574206893
Effective search space used: 4574206893
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013159
(1416 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003469.2| cullin-5 [Homo sapiens]. 526 e-149
Alignment gi|NP_003583.2| cullin-1 [Homo sapiens]. 105 8e-23
Alignment gi|NP_001185708.1| cullin-2 isoform b [Homo sapiens]. 72 1e-12
Alignment gi|NP_001185707.1| cullin-2 isoform a [Homo sapiens]. 72 1e-12
Alignment gi|NP_001185706.1| cullin-2 isoform c [Homo sapiens]. 72 1e-12
Alignment gi|NP_003582.2| cullin-2 isoform c [Homo sapiens]. 72 1e-12
Alignment gi|NP_001073341.1| cullin-4B isoform 2 [Homo sapiens]. 64 3e-10
Alignment gi|NP_003579.3| cullin-4B isoform 1 [Homo sapiens]. 64 3e-10
Alignment gi|NP_001008895.1| cullin-4A isoform 1 [Homo sapiens]. 57 5e-08
Alignment gi|NP_003580.1| cullin-4A isoform 2 [Homo sapiens]. 56 9e-08
>ref|NP_003469.2| cullin-5 [Homo sapiens].
Length = 780
Score = 526 bits (1355), Expect = e-149
Identities = 262/274 (95%), Positives = 265/274 (96%)
Frame = +3
Query: 480 MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAK 659
MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAK
Sbjct: 1 MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAK 60
Query: 660 IHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMG 839
IHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMG
Sbjct: 61 IHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMG 120
Query: 840 KQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV 1019
KQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV
Sbjct: 121 KQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGV 180
Query: 1020 RESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
RESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE
Sbjct: 181 RESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 240
Query: 1200 EEKRALRYLETRRECNSVEAVSNFVIVYSLRLFK 1301
EEKRALRYLETRRECNSVEA+ + + FK
Sbjct: 241 EEKRALRYLETRRECNSVEALMECCVNALVTSFK 274
>ref|NP_003583.2| cullin-1 [Homo sapiens].
Length = 776
Score = 105 bits (263), Expect = 8e-23
Identities = 72/276 (26%), Positives = 133/276 (48%), Gaps = 36/276 (13%)
Frame = +3
Query: 534 WDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKG---------PAKIHQA----- 671
WD +R + ++ ++S+ K ++ +L++ V+ C + P+K +
Sbjct: 21 WDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGG 80
Query: 672 -------LKEDILEFIKQAQARVLSHQDDT---ALLKAYIVEWRKFFTQCDILPKPFCQL 821
L + + EF+K +L +D ++LK Y +W + +L L
Sbjct: 81 AQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYL 140
Query: 822 EITLMGKQGSNKKSNVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDS 1001
+ ++ + + + + L L TW + +F + ++ ++ +KL+ ER GE ++
Sbjct: 141 NRHWVRRECDEGRKGIYE--IYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINT 198
Query: 1002 QLVIGVRESYVNLCSNPEDK------LQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQ 1163
+L+ GV +SYV L N +D L +Y+++FE +L TERFY ++ +LQQN V
Sbjct: 199 RLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVT 258
Query: 1164 NYMKYADAKLKEEEKRALRYL------ETRRECNSV 1253
YMK A+A+L EE++R YL E R+C V
Sbjct: 259 EYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQV 294
>ref|NP_001185708.1| cullin-2 isoform b [Homo sapiens].
Length = 758
Score = 72.0 bits (175), Expect = 1e-12
Identities = 52/249 (20%), Positives = 115/249 (46%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W+ + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 21 VDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLEN 80
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 81 HVRHLHKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQFIKKNKLTEADLQY 138
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++ L ++ + +R GE + +++ GV
Sbjct: 139 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQAILIRMLLREIKNDRGGEDPNQKVIHGVI 198
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y++ FE +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 199 NSFVHVEQYKKKFPLKFYQEIFESPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 258
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 259 EEIRCRKYL 267
>ref|NP_001185707.1| cullin-2 isoform a [Homo sapiens].
Length = 764
Score = 72.0 bits (175), Expect = 1e-12
Identities = 52/249 (20%), Positives = 115/249 (46%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W+ + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 27 VDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLEN 86
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 87 HVRHLHKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQFIKKNKLTEADLQY 144
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++ L ++ + +R GE + +++ GV
Sbjct: 145 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQAILIRMLLREIKNDRGGEDPNQKVIHGVI 204
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y++ FE +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 205 NSFVHVEQYKKKFPLKFYQEIFESPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 264
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 265 EEIRCRKYL 273
>ref|NP_001185706.1| cullin-2 isoform c [Homo sapiens].
Length = 745
Score = 72.0 bits (175), Expect = 1e-12
Identities = 52/249 (20%), Positives = 115/249 (46%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W+ + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 8 VDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLEN 67
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 68 HVRHLHKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQFIKKNKLTEADLQY 125
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++ L ++ + +R GE + +++ GV
Sbjct: 126 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQAILIRMLLREIKNDRGGEDPNQKVIHGVI 185
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y++ FE +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 186 NSFVHVEQYKKKFPLKFYQEIFESPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 245
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 246 EEIRCRKYL 254
>ref|NP_003582.2| cullin-2 isoform c [Homo sapiens].
Length = 745
Score = 72.0 bits (175), Expect = 1e-12
Identities = 52/249 (20%), Positives = 115/249 (46%), Gaps = 12/249 (4%)
Frame = +3
Query: 516 LQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCL-WDDKGPAKIHQALKEDILE 692
+ F++ W+ + + ++ E V + W D FSD++A+C+ + + +++ K +
Sbjct: 8 VDFDETWNKLLTTIKAVVMLEYVERATWNDRFSDIYALCVAYPEPLGERLYTETKIFLEN 67
Query: 693 FIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKS--- 863
++ RVL ++ ++ Y W ++ D + + L + K +
Sbjct: 68 HVRHLHKRVLESEEQVLVM--YHRYWEEYSKGADYMDCLYRYLNTQFIKKNKLTEADLQY 125
Query: 864 -------NVEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVR 1022
N + +L LD W + + ++ L ++ + +R GE + +++ GV
Sbjct: 126 GYGGVDMNEPLMEIGELALDMWRKLMVEPLQAILIRMLLREIKNDRGGEDPNQKVIHGVI 185
Query: 1023 ESYVNLCSNPED-KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 1199
S+V++ + L+ Y++ FE +L T +Y+ +A + LQ++ YM+ +LK+
Sbjct: 186 NSFVHVEQYKKKFPLKFYQEIFESPFLTETGEYYKQEASNLLQESNCSQYMEKVLGRLKD 245
Query: 1200 EEKRALRYL 1226
EE R +YL
Sbjct: 246 EEIRCRKYL 254
>ref|NP_001073341.1| cullin-4B isoform 2 [Homo sapiens].
Length = 895
Score = 64.3 bits (155), Expect = 3e-10
Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 3/249 (1%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQ 704
++ W ++ V + S+ K +L+ V +C + K A +++ L++ + IK
Sbjct: 196 DETWQKLKEAVEAIQNSTSI-KYNLEELYQAVENLCSY--KISANLYKQLRQICEDHIKA 252
Query: 705 AQARVLSHQDDTAL-LKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSI 881
+ D+ L LK W+ Q ++ F L+ T + Q S S
Sbjct: 253 QIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYV-LQNSMLPS------ 305
Query: 882 VRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPE 1055
+ + L+ + I S+ ++N+ D + L+ ER GEA D L+ S +++ S+
Sbjct: 306 IWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLL----RSLLSMLSD-- 359
Query: 1056 DKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETR 1235
LQIY+D+FE+ +L+ T R Y + +Q+ V Y+ + + +L+EE R + YL+
Sbjct: 360 --LQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQT 417
Query: 1236 RECNSVEAV 1262
+ + + V
Sbjct: 418 TQKSLIATV 426
>ref|NP_003579.3| cullin-4B isoform 1 [Homo sapiens].
Length = 913
Score = 64.3 bits (155), Expect = 3e-10
Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 3/249 (1%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQ 704
++ W ++ V + S+ K +L+ V +C + K A +++ L++ + IK
Sbjct: 214 DETWQKLKEAVEAIQNSTSI-KYNLEELYQAVENLCSY--KISANLYKQLRQICEDHIKA 270
Query: 705 AQARVLSHQDDTAL-LKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVEDSI 881
+ D+ L LK W+ Q ++ F L+ T + Q S S
Sbjct: 271 QIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYV-LQNSMLPS------ 323
Query: 882 VRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPE 1055
+ + L+ + I S+ ++N+ D + L+ ER GEA D L+ S +++ S+
Sbjct: 324 IWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLL----RSLLSMLSD-- 377
Query: 1056 DKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETR 1235
LQIY+D+FE+ +L+ T R Y + +Q+ V Y+ + + +L+EE R + YL+
Sbjct: 378 --LQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQT 435
Query: 1236 RECNSVEAV 1262
+ + + V
Sbjct: 436 TQKSLIATV 444
>ref|NP_001008895.1| cullin-4A isoform 1 [Homo sapiens].
Length = 759
Score = 56.6 bits (135), Expect = 5e-08
Identities = 55/241 (22%), Positives = 109/241 (45%), Gaps = 6/241 (2%)
Frame = +3
Query: 525 EDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQ 704
+D W + V + S+ + +L+ V +C K +++ L++ + +
Sbjct: 60 QDTWRKLHEAVRAVQSSTSI-RYNLEELYQAVENLC--SHKVSPMLYKQLRQACEDHV-- 114
Query: 705 AQARVLSHQDDTA----LLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVE 872
QA++L ++D+ LK W+ Q ++ F L+ T + Q S S
Sbjct: 115 -QAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYV-LQNSTLPS--- 169
Query: 873 DSIVRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCS 1046
+ + L+ + I S+ ++++ D + L+ ER GEA D L+ S + + S
Sbjct: 170 ---IWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLL----RSLLGMLS 222
Query: 1047 NPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL 1226
+ LQ+Y+D+FE +L+ T Y + +Q+ V Y+ + +L+EE R + YL
Sbjct: 223 D----LQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYL 278
Query: 1227 E 1229
+
Sbjct: 279 D 279
>ref|NP_003580.1| cullin-4A isoform 2 [Homo sapiens].
Length = 659
Score = 55.8 bits (133), Expect = 9e-08
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Frame = +3
Query: 708 QARVLSHQDDTA----LLKAYIVEWRKFFTQCDILPKPFCQLEITLMGKQGSNKKSNVED 875
QA++L ++D+ LK W+ Q ++ F L+ T + Q S S
Sbjct: 15 QAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYV-LQNSTLPS---- 69
Query: 876 SIVRKLMLDTWNESIFSN--IKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSN 1049
+ + L+ + I S+ ++++ D + L+ ER GEA D L+ S + + S+
Sbjct: 70 --IWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLL----RSLLGMLSD 123
Query: 1050 PEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLE 1229
LQ+Y+D+FE +L+ T Y + +Q+ V Y+ + +L+EE R + YL+
Sbjct: 124 ----LQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD 179
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,575,777
Number of extensions: 1111871
Number of successful extensions: 4078
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4056
Number of HSP's successfully gapped: 11
Length of query: 472
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 366
Effective length of database: 14,802,980
Effective search space: 5417890680
Effective search space used: 5417890680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013159
(1416 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 981 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 981 bits (495), Expect = 0.0
Identities = 501/503 (99%)
Strand = Plus / Plus
Query: 1 ctctctgcccaccgaggcgtccaggctccacagctcgctcccgagcgcgcccccgcccgc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40496170 ctctctgtccaccgaggcgtccaggctccacagctcgctcccgagcgcgcccccgcccgc 40496229
Query: 61 cgcgtcacgtgatgcggccaccgaccctgagctgccgggcctaagccgagctaaattcgt 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 40496230 cgcgtcacgtgatgcggccaccgaccttgagctgccgggcctaagccgagctaaattcgt 40496289
Query: 121 tgccgggggcctctgcggtgcaaccacaaaagctaatccgaaggagggggtagggttgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40496290 tgccgggggcctctgcggtgcaaccacaaaagctaatccgaaggagggggtagggttgtg 40496349
Query: 181 gggtcgatgcttcctcttccaattcaggtcggctccggttaccgtctcacccttcgccgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40496350 gggtcgatgcttcctcttccaattcaggtcggctccggttaccgtctcacccttcgccgt 40496409
Query: 241 ttgcggctcccggggcgtttgcatgcgctctttcgtgcggggaagctccggtgaccatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40496410 ttgcggctcccggggcgtttgcatgcgctctttcgtgcggggaagctccggtgaccatgt 40496469
Query: 301 aggggaaagcgggaggaagctccagctgcctgaggggaggtcggcgcggtcggcacgccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40496470 aggggaaagcgggaggaagctccagctgcctgaggggaggtcggcgcggtcggcacgccg 40496529
Query: 361 cctggcacccaccgcctcgcgggccgctggcccaggtgggagcccggcctgcagtcgcgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40496530 cctggcacccaccgcctcgcgggccgctggcccaggtgggagcccggcctgcagtcgcgg 40496589
Query: 421 cctgacccggagcgccgccaagtctcgcgccgtctcgcgagagtccaagttgaaggaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40496590 cctgacccggagcgccgccaagtctcgcgccgtctcgcgagagtccaagttgaaggaaca 40496649
Query: 481 tggcgacgtctaatctgttaaag 503
|||||||||||||||||||||||
Sbjct: 40496650 tggcgacgtctaatctgttaaag 40496672
Score = 454 bits (229), Expect = e-125
Identities = 235/237 (99%)
Strand = Plus / Plus
Query: 1179 gcagacgctaaattaaaagaagaagaaaaacgagcactacgttatttagaaacaagacga 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40532709 gcagacgctaaattaaaagaagaagaaaaacgagcactacgttatttagaaacaagacga 40532768
Query: 1239 gaatgtaactctgttgaagcagtaagtaattttgtaattgtttattctttgagattattt 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40532769 gaatgtaactctgttgaagcagtaagtaattttgtaattgtttattctttgagattattt 40532828
Query: 1299 aaagcacagtagctgaaggttgacaaatacatgatgcaagtaacattgtttctcctttct 1358
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40532829 aaagcacagtagctgagggttgacaaatacatgatgcaagtaacattgtttctcctttct 40532888
Query: 1359 cagattctgtgaccagtattacttatagattggtagcactctttcccagtgagccaa 1415
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 40532889 cagattctgtgaccagtattacttatagattgttagcactctttcccagtgagccaa 40532945
Score = 351 bits (177), Expect = 7e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 714 cgagtattgagccatcaagatgacacagctttactaaaagcttatattgttgaatggcga 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40527988 cgagtattgagccatcaagatgacacagctttactaaaagcttatattgttgaatggcga 40528047
Query: 774 aaattctttacacagtgtgatattttaccgaagcctttttgtcagctagagattacttta 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40528048 aaattctttacacagtgtgatattttaccgaagcctttttgtcagctagagattacttta 40528107
Query: 834 atgggtaaacagggcagcaataaaaaatcaaatgtagaagacagtattgttcgaaag 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40528108 atgggtaaacagggcagcaataaaaaatcaaatgtagaagacagtattgttcgaaag 40528164
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 1032 gttaacctttgttctaatccagaggataagcttcaaatttatagggacaattttgagaag 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40532480 gttaacctttgttctaatccagaggataagcttcaaatttatagggacaattttgagaag 40532539
Query: 1092 gcatacttggattcaacagagagattttatagaacacaggcaccctcgtatttacaacaa 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40532540 gcatacttggattcaacagagagattttatagaacacaggcaccctcgtatttacaacaa 40532599
Query: 1152 aatggtgtacagaattatatgaaatatg 1179
||||||||||||||||||||||||||||
Sbjct: 40532600 aatggtgtacagaattatatgaaatatg 40532627
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 889 agctcatgcttgatacgtggaatgagtcaatcttttcaaatataaaaaacagactacaag 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40529881 agctcatgcttgatacgtggaatgagtcaatcttttcaaatataaaaaacagactacaag 40529940
Query: 949 atagtgcaatgaagctggtacatgctgaaagattaggggaagcttttgattctcagcttg 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40529941 atagtgcaatgaagctggtacatgctgaaagattaggggaagcttttgattctcagcttg 40530000
Query: 1009 tcattggagtaagagaatcctatg 1032
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Sbjct: 40530001 tcattggagtaagagaatcctatg 40530024
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 501 aagaataaaggttctcttcagtttgaagacaaatgggatttcatgcgtccaattgttttg 560
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Sbjct: 40513544 aagaataaaggttctcttcagtttgaagacaaatgggatttcatgcgtccaattgttttg 40513603
Query: 561 aagcttttacgccaggaatctgttacaaagcagcagtggtttgacctgttttcg 614
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Sbjct: 40513604 aagcttttacgccaggaatctgttacaaagcagcagtggtttgacctgttttcg 40513657
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 614 ggatgtacatgcagtctgtctctgggatgataaaggcccagcaaaaatccatcaggcttt 673
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Sbjct: 40522304 ggatgtacatgcagtctgtctctgggatgataaaggcccagcaaaaatccatcaggcttt 40522363
Query: 674 aaaagaagatattcttgaattcattaagcaagcacaggca 713
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Sbjct: 40522364 aaaagaagatattcttgaattcattaagcaagcacaggca 40522403
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,351,034
Number of extensions: 353
Number of successful extensions: 353
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 7
Length of query: 1416
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1395
Effective length of database: 2,808,413,156
Effective search space: 3917736352620
Effective search space used: 3917736352620
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)