Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013166
(981 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039449.1| replication protein A2, 32kDa [Bos taurus]. 466 e-131
Alignment gi|XP_002698419.1| PREDICTED: replication protein A2, 32kDa-lik... 449 e-126
Alignment gi|XP_873600.3| PREDICTED: replication protein A2, 32kDa-like [... 446 e-125
Alignment gi|XP_002691960.1| PREDICTED: replication protein A2, 32kDa-lik... 206 3e-53
Alignment gi|XP_002701002.1| PREDICTED: replication protein A2, 32kDa-lik... 206 3e-53
>ref|NP_001039449.1| replication protein A2, 32kDa [Bos taurus].
Length = 270
Score = 466 bits (1200), Expect = e-131
Identities = 235/270 (87%), Positives = 245/270 (90%)
Frame = +3
Query: 138 MWNXXXXXXXXXXXXXXXXXTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV 317
MWN TQSPGGFGSPT SQAEKKSRARAQHIVPCTISQLLSATLV
Sbjct: 1 MWNSGFESYSTSSFGGAGGYTQSPGGFGSPTASQAEKKSRARAQHIVPCTISQLLSATLV 60
Query: 318 DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV 497
DEVF+IGNVEISQVTIVGIIR+AEKAATNIVYKIDDMTAAPMDVRQWVDTDDAS ENTVV
Sbjct: 61 DEVFRIGNVEISQVTIVGIIRNAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASSENTVV 120
Query: 498 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQLLAGR 677
PPETYVKVAGHLRSFQNKKSLVAFKI+PLEDMNEFTTHILEVVNAHM+L+KSNSQ AGR
Sbjct: 121 PPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTTHILEVVNAHMMLSKSNSQPSAGR 180
Query: 678 VPVSNPGMGEVGSFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA 857
P+SNPGMGE G+FGGN+F+PANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA
Sbjct: 181 APISNPGMGEAGNFGGNNFIPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA 240
Query: 858 SIKPAVDFLRHEGHIYSTVDDDHFKSTDAE 947
SIK AVDFL +EGHIYSTVDDDHFKSTDAE
Sbjct: 241 SIKLAVDFLSNEGHIYSTVDDDHFKSTDAE 270
>ref|XP_002698419.1| PREDICTED: replication protein A2, 32kDa-like [Bos taurus].
Length = 270
Score = 449 bits (1156), Expect = e-126
Identities = 226/270 (83%), Positives = 238/270 (88%)
Frame = +3
Query: 138 MWNXXXXXXXXXXXXXXXXXTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV 317
MWN TQSPGGFGS T SQA+KKSRARAQHIVPCTISQLLSATLV
Sbjct: 1 MWNSGCESYSTSSFGGAGGYTQSPGGFGSSTASQAKKKSRARAQHIVPCTISQLLSATLV 60
Query: 318 DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV 497
DE+F+IGNVEIS+VTIVGIIR+AEK ATNIVYKIDDMT PMDVRQWVDTDDAS ENTVV
Sbjct: 61 DEIFRIGNVEISRVTIVGIIRNAEKPATNIVYKIDDMTTVPMDVRQWVDTDDASSENTVV 120
Query: 498 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQLLAGR 677
PPE YVKVAGHLRSFQNKKSLVAFKIMPLE MNEFTTHILEVVNAHM+L+KSNSQ AGR
Sbjct: 121 PPEAYVKVAGHLRSFQNKKSLVAFKIMPLEHMNEFTTHILEVVNAHMMLSKSNSQPSAGR 180
Query: 678 VPVSNPGMGEVGSFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA 857
P+S PGMGE G+FGGN+F+PANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA
Sbjct: 181 APISKPGMGEAGNFGGNNFIPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA 240
Query: 858 SIKPAVDFLRHEGHIYSTVDDDHFKSTDAE 947
SIK AVDFL +EGHIYSTVDDDHFKSTDAE
Sbjct: 241 SIKLAVDFLSNEGHIYSTVDDDHFKSTDAE 270
>ref|XP_873600.3| PREDICTED: replication protein A2, 32kDa-like [Bos taurus].
Length = 277
Score = 446 bits (1147), Expect = e-125
Identities = 226/277 (81%), Positives = 240/277 (86%), Gaps = 7/277 (2%)
Frame = +3
Query: 138 MWNXXXXXXXXXXXXXXXXXTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV 317
MWN TQSPGGFGSPT SQA+KKSRA+AQHIVPCTISQLLSATLV
Sbjct: 1 MWNSGCESYSTSSFGGAGGYTQSPGGFGSPTASQAKKKSRAQAQHIVPCTISQLLSATLV 60
Query: 318 DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV 497
DE+F+IGNVEIS+VT+VGIIR+AEKAATNIVYKIDDMT PMDVRQWVDTDDAS ENTVV
Sbjct: 61 DEIFRIGNVEISRVTVVGIIRNAEKAATNIVYKIDDMTTVPMDVRQWVDTDDASSENTVV 120
Query: 498 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQLLAGR 677
PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHM+L+KSNSQ AGR
Sbjct: 121 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMMLSKSNSQPSAGR 180
Query: 678 VPVSNPGMGEVGSFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA 857
P+S PGMGE G+F GN+F+PANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHM VA
Sbjct: 181 APISKPGMGEAGNFSGNNFIPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMPVA 240
Query: 858 SIK-------PAVDFLRHEGHIYSTVDDDHFKSTDAE 947
SIK AVDFL +EGHIYSTVDDDHFKSTDAE
Sbjct: 241 SIKLARNFRSLAVDFLSNEGHIYSTVDDDHFKSTDAE 277
>ref|XP_002691960.1| PREDICTED: replication protein A2, 32kDa-like [Bos taurus].
Length = 121
Score = 206 bits (523), Expect = 3e-53
Identities = 99/120 (82%), Positives = 109/120 (90%)
Frame = +3
Query: 588 DMNEFTTHILEVVNAHMLLNKSNSQLLAGRVPVSNPGMGEVGSFGGNSFMPANGLTVAQN 767
D+ EFTTHILEVVNAH +L+KSNSQ AG+ P+SNPGMGE G F GN+F+PANGLTVA+N
Sbjct: 2 DLYEFTTHILEVVNAHKMLSKSNSQPSAGKAPISNPGMGEAGDFSGNNFIPANGLTVAEN 61
Query: 768 QVLNLIKACPRPEGLNFQDLKNQLQHMSVASIKPAVDFLRHEGHIYSTVDDDHFKSTDAE 947
QVLNLIKAC RPEGLNFQDLKNQLQHMSVAS+K AVDFL +EGHIYSTVDDDHFKSTDAE
Sbjct: 62 QVLNLIKACLRPEGLNFQDLKNQLQHMSVASVKLAVDFLSNEGHIYSTVDDDHFKSTDAE 121
>ref|XP_002701002.1| PREDICTED: replication protein A2, 32kDa-like [Bos taurus].
Length = 121
Score = 206 bits (523), Expect = 3e-53
Identities = 99/120 (82%), Positives = 109/120 (90%)
Frame = +3
Query: 588 DMNEFTTHILEVVNAHMLLNKSNSQLLAGRVPVSNPGMGEVGSFGGNSFMPANGLTVAQN 767
D+ EFTTHILEVVNAH +L+KSNSQ AG+ P+SNPGMGE G F GN+F+PANGLTVA+N
Sbjct: 2 DLYEFTTHILEVVNAHKMLSKSNSQPSAGKAPISNPGMGEAGDFSGNNFIPANGLTVAEN 61
Query: 768 QVLNLIKACPRPEGLNFQDLKNQLQHMSVASIKPAVDFLRHEGHIYSTVDDDHFKSTDAE 947
QVLNLIKAC RPEGLNFQDLKNQLQHMSVAS+K AVDFL +EGHIYSTVDDDHFKSTDAE
Sbjct: 62 QVLNLIKACLRPEGLNFQDLKNQLQHMSVASVKLAVDFLSNEGHIYSTVDDDHFKSTDAE 121
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,869,656
Number of extensions: 1135365
Number of successful extensions: 2921
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2916
Number of HSP's successfully gapped: 5
Length of query: 327
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,273,310
Effective search space: 3197221440
Effective search space used: 3197221440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013166
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013166
(981 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544465.2| PREDICTED: similar to Replication protein A 32 ... 483 e-137
>ref|XP_544465.2| PREDICTED: similar to Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2) (P34) [Canis
familiaris].
Length = 368
Score = 483 bits (1244), Expect = e-137
Identities = 244/288 (84%), Positives = 256/288 (88%)
Frame = +3
Query: 84 NPPDRSLLELYTEGIVTKMWNXXXXXXXXXXXXXXXXXTQSPGGFGSPTPSQAEKKSRAR 263
+PPD S+ +L+ EGIVTKMW TQSPGGFGSPTPSQAEKKSRAR
Sbjct: 81 SPPDGSVADLFPEGIVTKMWFGGSESYGSSAFSGAGGYTQSPGGFGSPTPSQAEKKSRAR 140
Query: 264 AQHIVPCTISQLLSATLVDEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPM 443
AQHIVPCTISQLLSATLVDE+FKIGNVEISQVTIVGIIRHAEKA TNIVYKIDDMTAAPM
Sbjct: 141 AQHIVPCTISQLLSATLVDEMFKIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPM 200
Query: 444 DVRQWVDTDDASGENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEV 623
DVRQWVDTDDAS ENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFT HILEV
Sbjct: 201 DVRQWVDTDDASSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTAHILEV 260
Query: 624 VNAHMLLNKSNSQLLAGRVPVSNPGMGEVGSFGGNSFMPANGLTVAQNQVLNLIKACPRP 803
VNAHM+L+KSNSQ AGR P+SNPGMGE G+FGG S +PANGLTVAQNQVLNLIKACPRP
Sbjct: 261 VNAHMILSKSNSQPPAGRAPISNPGMGETGNFGGISSIPANGLTVAQNQVLNLIKACPRP 320
Query: 804 EGLNFQDLKNQLQHMSVASIKPAVDFLRHEGHIYSTVDDDHFKSTDAE 947
EGLNFQDLKNQLQHMSVASIK AVDFL +EGHIYSTVDDDHFKSTDA+
Sbjct: 321 EGLNFQDLKNQLQHMSVASIKQAVDFLSNEGHIYSTVDDDHFKSTDAD 368
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,387,119
Number of extensions: 1159883
Number of successful extensions: 3168
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3166
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 224
Effective length of database: 15,440,896
Effective search space: 3458760704
Effective search space used: 3458760704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013166
(981 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127786.1| PREDICTED: replication protein A 32 kDa subu... 493 e-140
Alignment gi|XP_003356281.1| PREDICTED: replication protein A 32 kDa subu... 311 5e-85
>ref|XP_003127786.1| PREDICTED: replication protein A 32 kDa subunit-like isoform 1 [Sus
scrofa].
Length = 270
Score = 493 bits (1269), Expect = e-140
Identities = 250/270 (92%), Positives = 251/270 (92%)
Frame = +3
Query: 138 MWNXXXXXXXXXXXXXXXXXTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV 317
MWN TQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV
Sbjct: 1 MWNSGFESYSSSSFGGAGGYTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV 60
Query: 318 DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV 497
DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV
Sbjct: 61 DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV 120
Query: 498 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQLLAGR 677
PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQLLAGR
Sbjct: 121 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQLLAGR 180
Query: 678 VPVSNPGMGEVGSFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA 857
VPVSNPGMGEVGSFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA
Sbjct: 181 VPVSNPGMGEVGSFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA 240
Query: 858 SIKPAVDFLRHEGHIYSTVDDDHFKSTDAE 947
SIK AVDFL +EGHIYSTVDDDHFKSTDAE
Sbjct: 241 SIKQAVDFLSNEGHIYSTVDDDHFKSTDAE 270
>ref|XP_003356281.1| PREDICTED: replication protein A 32 kDa subunit-like isoform 2 [Sus
scrofa].
Length = 212
Score = 311 bits (796), Expect = 5e-85
Identities = 159/176 (90%), Positives = 159/176 (90%)
Frame = +3
Query: 138 MWNXXXXXXXXXXXXXXXXXTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV 317
MWN TQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV
Sbjct: 1 MWNSGFESYSSSSFGGAGGYTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV 60
Query: 318 DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV 497
DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV
Sbjct: 61 DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV 120
Query: 498 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQL 665
PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQL
Sbjct: 121 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQL 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,618,877
Number of extensions: 725389
Number of successful extensions: 1809
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1804
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,879,129
Effective search space: 2024441412
Effective search space used: 2024441412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013166
(981 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035414.3| replication protein A 32 kDa subunit [Mus muscu... 442 e-124
>ref|NP_035414.3| replication protein A 32 kDa subunit [Mus musculus].
Length = 270
Score = 442 bits (1138), Expect = e-124
Identities = 222/270 (82%), Positives = 234/270 (86%)
Frame = +3
Query: 138 MWNXXXXXXXXXXXXXXXXXTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV 317
MWN TQSPGGFGSPTPSQAEKKSR RAQHIVPCTISQLLSATL
Sbjct: 1 MWNSGFESFSSSTYGGAGGYTQSPGGFGSPTPSQAEKKSRVRAQHIVPCTISQLLSATLT 60
Query: 318 DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV 497
DEVF+IG+VEISQVTIVGIIRHAEKA TNIVYKIDDMTA PMDVRQWVDTDDASGEN VV
Sbjct: 61 DEVFRIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVV 120
Query: 498 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQLLAGR 677
PPETYVKVAGHLRSFQNKKSLVAFKI+PLEDMNEFT HILEVVN+HM+L+K NSQ AGR
Sbjct: 121 PPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKPNSQASAGR 180
Query: 678 VPVSNPGMGEVGSFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA 857
+SNPGM E G+F GN+FMPANGLTV QNQVLNLIKACPRPEGLNFQDL++QLQHM V
Sbjct: 181 PSMSNPGMSEPGNFSGNNFMPANGLTVVQNQVLNLIKACPRPEGLNFQDLRSQLQHMPVP 240
Query: 858 SIKPAVDFLRHEGHIYSTVDDDHFKSTDAE 947
SIK AVDFL +EGHIYSTVDDDHFKSTDAE
Sbjct: 241 SIKQAVDFLCNEGHIYSTVDDDHFKSTDAE 270
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,710,598
Number of extensions: 978558
Number of successful extensions: 2424
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2422
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 225
Effective length of database: 12,553,887
Effective search space: 2824624575
Effective search space used: 2824624575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013166
(981 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002937.1| replication protein A 32 kDa subunit [Homo sapi... 465 e-131
Alignment gi|NP_037479.1| replication protein A 30 kDa subunit [Homo sapi... 202 4e-52
>ref|NP_002937.1| replication protein A 32 kDa subunit [Homo sapiens].
Length = 270
Score = 465 bits (1196), Expect = e-131
Identities = 232/270 (85%), Positives = 242/270 (89%)
Frame = +3
Query: 138 MWNXXXXXXXXXXXXXXXXXTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLV 317
MWN TQSPGGFGSP PSQAEKKSRARAQHIVPCTISQLLSATLV
Sbjct: 1 MWNSGFESYGSSSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLV 60
Query: 318 DEVFKIGNVEISQVTIVGIIRHAEKAATNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV 497
DEVF+IGNVEISQVTIVGIIRHAEKA TNIVYKIDDMTAAPMDVRQWVDTDD S ENTVV
Sbjct: 61 DEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVV 120
Query: 498 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVVNAHMLLNKSNSQLLAGR 677
PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEV+NAHM+L+K+NSQ AGR
Sbjct: 121 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGR 180
Query: 678 VPVSNPGMGEVGSFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLQHMSVA 857
P+SNPGM E G+FGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQL+HMSV+
Sbjct: 181 APISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVS 240
Query: 858 SIKPAVDFLRHEGHIYSTVDDDHFKSTDAE 947
SIK AVDFL +EGHIYSTVDDDHFKSTDAE
Sbjct: 241 SIKQAVDFLSNEGHIYSTVDDDHFKSTDAE 270
>ref|NP_037479.1| replication protein A 30 kDa subunit [Homo sapiens].
Length = 261
Score = 202 bits (514), Expect = 4e-52
Identities = 113/238 (47%), Positives = 149/238 (62%)
Frame = +3
Query: 228 TPSQAEKKSRARAQHIVPCTISQLLSATLVDEVFKIGNVEISQVTIVGIIRHAEKAATNI 407
TP+ ++ + R Q +VPC ++QLLS+T+ D VFK+ + +SQV+IVG+IR AEKA+ +I
Sbjct: 31 TPAIKTQRPKVRIQDVVPCNVNQLLSSTVFDPVFKVRGIIVSQVSIVGVIRGAEKASNHI 90
Query: 408 VYKIDDMTAAPMDVRQWVDTDDASGENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLE 587
YKIDDMTA P++ RQW + + T + YVKV G L+ KSL KI LE
Sbjct: 91 CYKIDDMTAKPIEARQWFGREKVK-QVTPLSVGVYVKVFGILKCPTGTKSLEVLKIHVLE 149
Query: 588 DMNEFTTHILEVVNAHMLLNKSNSQLLAGRVPVSNPGMGEVGSFGGNSFMPANGLTVAQN 767
DMNEFT HILE VNAHM+L+K+ VPVS EV G N N + Q+
Sbjct: 150 DMNEFTVHILETVNAHMMLDKARRDTTVESVPVS---PSEVNDAGDNDESHRNFI---QD 203
Query: 768 QVLNLIKACPRPEGLNFQDLKNQLQHMSVASIKPAVDFLRHEGHIYSTVDDDHFKSTD 941
+VL LI CP EG + +L+ QL +SV +IK A+D+L EGHIY TVD +HFKS D
Sbjct: 204 EVLRLIHECPHQEGKSIHELRAQLCDLSVKAIKEAIDYLTVEGHIYPTVDREHFKSAD 261
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,789,364
Number of extensions: 1156091
Number of successful extensions: 3009
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3006
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,901,872
Effective search space: 3338019328
Effective search space used: 3338019328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013166
(981 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 295 2e-77
Sscrofa_Chr01 121 8e-25
Sscrofa_ChrX 60 2e-06
>Sscrofa_Chr06
|| Length = 157765593
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 1 tccttcgcgggaaggagtttgtggctccagcgaaaagtagatacagcgcagctgcaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78586261 tccttcgcgggaaggagtttgtggctccagcgaaaagtagatacagcgcagctgcaacag 78586202
Query: 61 cggagtcctgagggggttcggctaacccaccggaccggagccttctggagctctacactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78586201 cggagtcctgagggggttcggctaacccaccggaccggagccttctggagctctacactg 78586142
Query: 121 agggaatagtgaccaagatgtggaatagt 149
|||||||||||||||||||||||||||||
Sbjct: 78586141 agggaatagtgaccaagatgtggaatagt 78586113
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 544 agaacaagaaaagcctggtcgcttttaagatcatgcccctggaggatatgaatgaattca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78579660 agaacaagaaaagcctggtcgcttttaagatcatgcccctggaggatatgaatgaattca 78579601
Query: 604 ccacacatattctagaagtagtcaatgcacacatgctgctgaacaagtctaacagccag 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78579600 ccacacatattctagaagtagtcaatgcacacatgctgctgaacaagtctaacagccag 78579542
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 355 aggtgactattgtggggataatcagacatgcagagaaggctgcaaccaacattgtttaca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78583688 aggtgactattgtggggataatcagacatgcagagaaggctgcaaccaacattgtttaca 78583629
Query: 415 aaatagatgacatgacagctgcacccatggatgtccgccagtgggttgacacagatg 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78583628 aaatagatgacatgacagctgcacccatggatgtccgccagtgggttgacacagatg 78583572
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 659 ccagctcctagcagggagagtacctgtcagcaatccaggaatgggtgaagttgggagctt 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78576702 ccagctcctagcagggagagtacctgtcagcaatccaggaatgggtgaagttgggagctt 78576643
Query: 719 tggtgggaatagcttcatgccagcaaatggcctcactgtggcccagaaccaggt 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78576642 tggtgggaatagcttcatgccagcaaatggcctcactgtggcccagaaccaggt 78576589
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 148 gtggatttgaaagctatagcagctcctcctttgggggagccggcggctacacacagtccc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78585870 gtggatttgaaagctatagcagctcctcctttgggggagccggcggctacacacagtccc 78585811
Query: 208 ctgggggctttggatcaccgacaccttcccaggctgaaaagaaatct 254
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78585810 ctgggggctttggatcaccgacaccttcccaggctgaaaagaaatct 78585764
Score = 208 bits (105), Expect = 4e-51
Identities = 111/113 (98%)
Strand = Plus / Minus
Query: 869 agctgtggattttctaaggcacgagggacacatctattcaactgtggatgatgatcattt 928
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 78573621 agctgtggattttctaagcaacgagggacacatctattcaactgtggatgatgatcattt 78573562
Query: 929 taaatccacagatgcagaataactggatctaaccgggtacctgagatattttc 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78573561 taaatccacagatgcagaataactggatctaaccgggtacctgagatattttc 78573509
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 255 agagcccgagctcagcacattgtaccctgtaccatatctcagctgctttctgctactctg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78583917 agagcccgagctcagcacattgtaccctgtaccatatctcagctgctttctgctactctg 78583858
Query: 315 gttgatgaagtgttcaaaattgggaatgttgagatttcacaggt 358
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78583857 gttgatgaagtgttcaaaattgggaatgttgagatttcacaggt 78583814
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 769 aggtgctgaatttaattaaggcttgtccccggcctgaaggactgaactttcaggatctca 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78576152 aggtgctgaatttaattaaggcttgtccccggcctgaaggactgaactttcaggatctca 78576093
Query: 829 agaaccagctccaacacatgagtgtagcctcgatcaag 866
||||||||||||||||||||||||||||||||||||||
Sbjct: 78576092 agaaccagctccaacacatgagtgtagcctcgatcaag 78576055
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 471 gatgccagtggtgaaaacactgtggttcctccagaaacatatgtgaaagtagctggtcat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78580242 gatgccagtggtgaaaacactgtggttcctccagaaacatatgtgaaagtagctggtcat 78580183
Query: 531 ctgagatcttttcag 545
|||||||||||||||
Sbjct: 78580182 ctgagatcttttcag 78580168
>Sscrofa_Chr01
|| Length = 315321322
Score = 121 bits (61), Expect = 8e-25
Identities = 225/277 (81%), Gaps = 2/277 (0%)
Strand = Plus / Minus
Query: 685 tcagcaatccaggaatgggtgaagttgggagctttggtgggaa-tagcttcatgccagca 743
|||||||||||| ||||||||| |||| ||||||| |||| ||||||||||||||||
Sbjct: 79436029 tcagcaatccagaaatgggtgactcagggaactttggtaggaagtagcttcatgccagca 79435970
Query: 744 aatggcctcactgtggcccagaaccaggtgctgaatttaattaaggcttgtccccggcct 803
|| |||||||| ||||||| ||| |||| ||| |||| | |||||||| || |||
Sbjct: 79435969 aaaggcctcaccgtggccccaaactaggttctgcatttggtcaaggcttgcccaacacct 79435910
Query: 804 gaaggactgaactttcaggatctcaagaaccagctccaacacatgagtgtagcctcgatc 863
|||||| |||||||||||||| | ||||| ||||| ||||||| || |||| | || | |
Sbjct: 79435909 gaaggattgaactttcaggatattaagaatcagct-caacacaagactgtaccatcaagc 79435851
Query: 864 aagccagctgtggattttctaaggcacgagggacacatctattcaactgtggatgatgat 923
||| || |||||| ||||| || | ||| || ||| || ||| || |||||||||| |
Sbjct: 79435850 aaggaagttgtggactttcttagcaaggagagatacacctgttctaccgtggatgatggt 79435791
Query: 924 cattttaaatccacagatgcagaataactggatctaa 960
||||| ||||||||| |||||||||| ||||||||||
Sbjct: 79435790 catttaaaatccacaaatgcagaatagctggatctaa 79435754
>Sscrofa_ChrX
|| Length = 144288218
Score = 60.0 bits (30), Expect = 2e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 591 atgaatgaattcaccacacatattctagaagtagtcaatgcacacatgctgctg 644
|||||||| |||||||||||||||||| || | |||||||||||| || |||||
Sbjct: 85893225 atgaatgagttcaccacacatattctataaatggtcaatgcacacttgatgctg 85893278
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,399,433
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 11
Length of query: 981
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 960
Effective length of database: 2,808,413,156
Effective search space: 2696076629760
Effective search space used: 2696076629760
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)