Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013168
(1156 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867461.1| PREDICTED: similar to zinc finger protein 403 i... 356 2e-98
Alignment gi|XP_853479.1| PREDICTED: similar to gametogenetin binding pro... 356 3e-98
Alignment gi|XP_867452.1| PREDICTED: similar to zinc finger protein 403 i... 328 8e-90
>ref|XP_867461.1| PREDICTED: similar to zinc finger protein 403 isoform 5 [Canis
familiaris].
Length = 568
Score = 356 bits (914), Expect = 2e-98
Identities = 173/208 (83%), Positives = 180/208 (86%)
Frame = +1
Query: 532 MTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDVWELMSQ 711
MTDAKKLYTLF VHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDVWELMSQ
Sbjct: 1 MTDAKKLYTLFDVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDVWELMSQ 60
Query: 712 ECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYE 891
ECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYE
Sbjct: 61 ECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYE 120
Query: 892 SLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRREGMX*T*I*LKKKF*PALGFIFMK 1071
LRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRE T +++ LG +
Sbjct: 121 GLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRERHAKTIDIAQEEVLTCLGIHLYE 180
Query: 1072 DCIESGQNYXQKKRTWQMLFYLGVDALR 1155
Q +++TWQMLFYLGVDALR
Sbjct: 181 RLHRIWQKLRAEEQTWQMLFYLGVDALR 208
>ref|XP_853479.1| PREDICTED: similar to gametogenetin binding protein 2 isoform 2
[Canis familiaris].
Length = 627
Score = 356 bits (913), Expect = 3e-98
Identities = 186/267 (69%), Positives = 194/267 (72%), Gaps = 44/267 (16%)
Frame = +1
Query: 487 LTVGPKGVLSVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPK 666
+TVG KGVLSVTRSCMTDAKKLYTLF VHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPK
Sbjct: 1 MTVGRKGVLSVTRSCMTDAKKLYTLFDVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPK 60
Query: 667 PLG------------------------------------------GCWMDVWELMSQECR 720
PLG GCWMDVWELMSQECR
Sbjct: 61 PLGEGSSSSVSSEKLSTDKRSSEDHRKDSKCRIIFHYGPFQGTSRGCWMDVWELMSQECR 120
Query: 721 DEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYESLR 900
DEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYE LR
Sbjct: 121 DEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYEGLR 180
Query: 901 CCPHERHIHVCCETDFIAHLLGRAEPEFAGG--RREGMX*T*I*LKKKF*PALGFIFMKD 1074
CCPHERHIHVCCETDFIAHLLGRAEPEFAGG RRE T +++ LG +
Sbjct: 181 CCPHERHIHVCCETDFIAHLLGRAEPEFAGGYERRERHAKTIDIAQEEVLTCLGIHLYER 240
Query: 1075 CIESGQNYXQKKRTWQMLFYLGVDALR 1155
Q +++TWQMLFYLGVDALR
Sbjct: 241 LHRIWQKLRAEEQTWQMLFYLGVDALR 267
>ref|XP_867452.1| PREDICTED: similar to zinc finger protein 403 is
Animal-Genome cDNA 20110601C-013168
Animal-Genome cDNA 20110601C-013168
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013168
(1156 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193051.1| gametogenetin-binding protein 2 [Bos taurus]. 605 e-173
Alignment gi|XP_002695662.1| PREDICTED: gametogenetin binding protein 2 [... 605 e-173
>ref|NP_001193051.1| gametogenetin-binding protein 2 [Bos taurus].
Length = 696
Score = 605 bits (1559), Expect = e-173
Identities = 298/334 (89%), Positives = 306/334 (91%)
Frame = +1
Query: 154 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSM 333
RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNG QLKQFIQRHSM
Sbjct: 3 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGTQLKQFIQRHSM 62
Query: 334 LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 513
LKQQDLSIAM+VTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL
Sbjct: 63 LKQQDLSIAMVVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 122
Query: 514 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 693
SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV
Sbjct: 123 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 182
Query: 694 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 873
WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY
Sbjct: 183 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 242
Query: 874 CAALYESLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRREGMX*T*I*LKKKF*PAL 1053
CAALYE LRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRE T +++ L
Sbjct: 243 CAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRERHAKTIDIAQEEVLTCL 302
Query: 1054 GFIFMKDCIESGQNYXQKKRTWQMLFYLGVDALR 1155
G + Q +++TWQMLFYLGVDALR
Sbjct: 303 GIHLYERLHRIWQKLRAEEQTWQMLFYLGVDALR 336
>ref|XP_002695662.1| PREDICTED: gametogenetin binding protein 2 [Bos taurus].
Length = 696
Score = 605 bits (1559), Expect = e-173
Identities = 298/334 (89%), Positives = 306/334 (91%)
Frame = +1
Query: 154 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSM 333
RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNG QLKQFIQRHSM
Sbjct: 3 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGTQLKQFIQRHSM 62
Query: 334 LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 513
LKQQDLSIAM+VTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL
Sbjct: 63 LKQQDLSIAMVVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 122
Query: 514 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 693
SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV
Sbjct: 123 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 182
Query: 694 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 873
WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY
Sbjct: 183 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 242
Query: 874 CAALYESLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRREGMX*T*I*LKKKF*PAL 1053oform 4 [Canis
familiaris].
Length = 160
Score = 328 bits (840), Expect = 8e-90
Identities = 152/154 (98%), Positives = 152/154 (98%)
Frame = +1
Query: 532 MTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDVWELMSQ 711
MTDAKKLYTLF VHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDVWELMSQ
Sbjct: 1 MTDAKKLYTLFDVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDVWELMSQ 60
Query: 712 ECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYE 891
ECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYE
Sbjct: 61 ECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGYCAALYE 120
Query: 892 SLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGG 993
LRCCPHERHIHVCCETDFIAHLLGRAEPEFAGG
Sbjct: 121 GLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGG 154
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,953,353
Number of extensions: 876289
Number of successful extensions: 2329
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2325
Number of HSP's successfully gapped: 4
Length of query: 385
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 280
Effective length of database: 15,374,224
Effective search space: 4304782720
Effective search space used: 4304782720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
CAALYE LRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRE T +++ L
Sbjct: 243 CAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRERHAKTIDIAQEEVLTCL 302
Query: 1054 GFIFMKDCIESGQNYXQKKRTWQMLFYLGVDALR 1155
G + Q +++TWQMLFYLGVDALR
Sbjct: 303 GIHLYERLHRIWQKLRAEEQTWQMLFYLGVDALR 336
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,949,927
Number of extensions: 946054
Number of successful extensions: 2151
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2147
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,240,222
Effective search space: 4001502382
Effective search space used: 4001502382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013168
(1156 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358185.1| PREDICTED: gametogenetin-binding protein 2 i... 605 e-173
Alignment gi|XP_003131751.2| PREDICTED: gametogenetin-binding protein 2 i... 605 e-173
>ref|XP_003358185.1| PREDICTED: gametogenetin-binding protein 2 isoform 2 [Sus scrofa].
Length = 696
Score = 605 bits (1560), Expect = e-173
Identities = 299/334 (89%), Positives = 306/334 (91%)
Frame = +1
Query: 154 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSM 333
RLVAVCRDGEEEFPFERRQIPLYIDDTLTM MEFPDNVLNLDGHQNNGAQLKQFIQRHSM
Sbjct: 3 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMGMEFPDNVLNLDGHQNNGAQLKQFIQRHSM 62
Query: 334 LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 513
LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL
Sbjct: 63 LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 122
Query: 514 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 693
SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV
Sbjct: 123 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 182
Query: 694 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 873
WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY
Sbjct: 183 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 242
Query: 874 CAALYESLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRREGMX*T*I*LKKKF*PAL 1053
CAALYE LRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRE T +++ L
Sbjct: 243 CAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRERHAKTIDIAQEEVLTCL 302
Query: 1054 GFIFMKDCIESGQNYXQKKRTWQMLFYLGVDALR 1155
G + Q +++TWQMLFYLGVDALR
Sbjct: 303 GIHLYERLHRIWQKLRAEEQTWQMLFYLGVDALR 336
>ref|XP_003131751.2| PREDICTED: gametogenetin-binding protein 2 isoform 1 [Sus scrofa].
Length = 676
Score = 605 bits (1560), Expect = e-173
Identities = 299/334 (89%), Positives = 306/334 (91%)
Frame = +1
Query: 154 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSM 333
RLVAVCRDGEEEFPFERRQIPLYIDDTLTM MEFPDNVLNLDGHQNNGAQLKQFIQRHSM
Sbjct: 3 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMGMEFPDNVLNLDGHQNNGAQLKQFIQRHSM 62
Query: 334 LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 513
LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL
Sbjct: 63 LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 122
Query: 514 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 693
SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV
Sbjct: 123 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 182
Query: 694 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 873
WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY
Sbjct: 183 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 242
Query: 874 CAALYESLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRREGMX*T*I*LKKKF*PAL 1053
CAALYE LRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRE T +++ L
Sbjct: 243 CAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRERHAKTIDIAQEEVLTCL 302
Query: 1054 GFIFMKDCIESGQNYXQKKRTWQMLFYLGVDALR 1155
G + Q +++TWQMLFYLGVDALR
Sbjct: 303 GIHLYERLHRIWQKLRAEEQTWQMLFYLGVDALR 336
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,112,278
Number of extensions: 726412
Number of successful extensions: 1438
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1433
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 284
Effective length of database: 8,829,335
Effective search space: 2507531140
Effective search space used: 2507531140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013168
(1156 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694784.2| gametogenetin-binding protein 2 [Mus musculus]. 600 e-172
>ref|NP_694784.2| gametogenetin-binding protein 2 [Mus musculus].
Length = 698
Score = 600 bits (1547), Expect = e-172
Identities = 298/336 (88%), Positives = 307/336 (91%), Gaps = 2/336 (0%)
Frame = +1
Query: 154 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSM 333
RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSM
Sbjct: 3 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSM 62
Query: 334 LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 513
LKQQDLSIAM+VTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL
Sbjct: 63 LKQQDLSIAMVVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 122
Query: 514 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 693
S+TRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV
Sbjct: 123 SLTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 182
Query: 694 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 873
WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY
Sbjct: 183 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 242
Query: 874 CAALYESLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGG--RREGMX*T*I*LKKKF*P 1047
CAALYE LRCCPHERHIHVCCETDFIAHLLGRAEPEFAGG RRE T +++
Sbjct: 243 CAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGYERRERHAKTIDIAQEEVLT 302
Query: 1048 ALGFIFMKDCIESGQNYXQKKRTWQMLFYLGVDALR 1155
LG + Q +++TWQMLFYLGVDALR
Sbjct: 303 CLGIHLYERLHRIWQKLRAEEQTWQMLFYLGVDALR 338
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,089,500
Number of extensions: 762456
Number of successful extensions: 1994
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1991
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 282
Effective length of database: 12,523,851
Effective search space: 3531725982
Effective search space used: 3531725982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013168
(1156 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079111.1| gametogenetin-binding protein 2 [Homo sapiens]. 605 e-173
>ref|NP_079111.1| gametogenetin-binding protein 2 [Homo sapiens].
Length = 697
Score = 605 bits (1559), Expect = e-173
Identities = 298/334 (89%), Positives = 306/334 (91%)
Frame = +1
Query: 154 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHSM 333
RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRH M
Sbjct: 3 RLVAVCRDGEEEFPFERRQIPLYIDDTLTMVMEFPDNVLNLDGHQNNGAQLKQFIQRHGM 62
Query: 334 LKQQDLSIAMMVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 513
LKQQDLSIAM+VTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL
Sbjct: 63 LKQQDLSIAMVVTSREVLSALSQLVPCVGCRRSVERLFSQLVESGNPALEPLTVGPKGVL 122
Query: 514 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 693
SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV
Sbjct: 123 SVTRSCMTDAKKLYTLFYVHGSKLNDMIDAIPKSKKNKRCQLHSLDTHKPKPLGGCWMDV 182
Query: 694 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 873
WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY
Sbjct: 183 WELMSQECRDEVVLIDSSCLLETLETYLRKHRFCTDCKNKVLRAYNILIGELDCSKEKGY 242
Query: 874 CAALYESLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRREGMX*T*I*LKKKF*PAL 1053
CAALYE LRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRE T +++ L
Sbjct: 243 CAALYEGLRCCPHERHIHVCCETDFIAHLLGRAEPEFAGGRRERHAKTIDIAQEEVLTCL 302
Query: 1054 GFIFMKDCIESGQNYXQKKRTWQMLFYLGVDALR 1155
G + Q +++TWQMLFYLGVDALR
Sbjct: 303 GIHLYERLHRIWQKLRAEEQTWQMLFYLGVDALR 336
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,497,378
Number of extensions: 876243
Number of successful extensions: 2349
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2347
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,868,908
Effective search space: 4178163148
Effective search space used: 4178163148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013168
(1156 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 515 e-143
>Sscrofa_Chr12
|| Length = 63588571
Score = 515 bits (260), Expect = e-143
Identities = 260/260 (100%)
Strand = Plus / Plus
Query: 318 tcagcgacatagtatgcttaagcagcaagatctaagcattgccatgatggtgacatcacg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39704170 tcagcgacatagtatgcttaagcagcaagatctaagcattgccatgatggtgacatcacg 39704229
Query: 378 tgaagtcttgagtgcgctttctcagcttgtcccgtgtgttggttgtcgacgcagtgtgga 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39704230 tgaagtcttgagtgcgctttctcagcttgtcccgtgtgttggttgtcgacgcagtgtgga 39704289
Query: 438 gcgcctcttttcccagcttgtagagtctggaaatcctgcccttgaacccctgacagtagg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39704290 gcgcctcttttcccagcttgtagagtctggaaatcctgcccttgaacccctgacagtagg 39704349
Query: 498 gcctaagggagtcctatctgtaactcgaagctgcatgactgatgcaaagaagctttatac 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39704350 gcctaagggagtcctatctgtaactcgaagctgcatgactgatgcaaagaagctttatac 39704409
Query: 558 gttattttatgtacatgggt 577
||||||||||||||||||||
Sbjct: 39704410 gttattttatgtacatgggt 39704429
Score = 404 bits (204), Expect = e-110
Identities = 207/208 (99%)
Strand = Plus / Plus
Query: 785 acaggttttgcaccgattgcaagaataaagtcctccgagcatacaatatccttattggtg 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39719492 acaggttttgcaccgattgcaagaataaagtcctccgagcatacaatatccttattggtg 39719551
Query: 845 aacttgattgcagcaaagagaagggctactgtgctgcactttatgaaagcttgcggtgct 904
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 39719552 aacttgattgcagcaaagagaagggctactgtgctgcactttatgaaggcttgcggtgct 39719611
Query: 905 gtcctcatgagagacacatacacgtttgctgtgagacagacttcattgcacatcttttgg 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39719612 gtcctcatgagagacacatacacgtttgctgtgagacagacttcattgcacatcttttgg 39719671
Query: 965 gtcgtgctgagccagagttcgcaggagg 992
||||||||||||||||||||||||||||
Sbjct: 39719672 gtcgtgctgagccagagttcgcaggagg 39719699
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 674 gaggttgttggatggacgtatgggaactaatgtcccaagaatgcagggatgaagtcgttt 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39711756 gaggttgttggatggacgtatgggaactaatgtcccaagaatgcagggatgaagtcgttt 39711815
Query: 734 taattgactctagttgtcttttagaaacactagaaacctatctgcgaaaacacaggt 790
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39711816 taattgactctagttgtcttttagaaacactagaaacctatctgcgaaaacacaggt 39711872
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 575 ggtccaaactaaatgacatgatagatgctattccaaaaagtaaaaagaacaagagatgtc 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39707485 ggtccaaactaaatgacatgatagatgctattccaaaaagtaaaaagaacaagagatgtc 39707544
Query: 635 agttgcactccttagatacgcacaaaccaaaacctttggg 674
||||||||||||||||||||||||||||||||||||||||
Sbjct: 39707545 agttgcactccttagatacgcacaaaccaaaacctttggg 39707584
Score = 184 bits (93), Expect = 7e-44
Identities = 129/140 (92%), Gaps = 1/140 (0%)
Strand = Plus / Plus
Query: 1017 atagatatagctcaagaagaagttctgacctgctttgggattcatctttatgaaagactg 1076
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 39721623 atagatatagctcaagaagaagttctgacctgcttgggaattcatctttatgaaagactg 39721682
Query: 1077 catcgaatctgggcaaaactacnagcagaagaagcgaacttggcaaatgcttttctatct 1136
|||||||||||| |||||||| |||||||| ||| || ||||| ||||||||||||||
Sbjct: 39721683 catcgaatctggcaaaaactacgagcagaag-agcagacatggcagatgcttttctatct 39721741
Query: 1137 gggtgttgatgctttacgca 1156
|||||||||||||||||||
Sbjct: 39721742 tggtgttgatgctttacgca 39721761
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 154 cgactggtggcagtgtgcagggacggggaggaggagttccccttcgagagaaggcagatt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39695791 cgactggtggcagtgtgcagggacggggaggaggagttccccttcgagagaaggcagatt 39695850
Query: 214 cccctctacatagacgacaccctcacg 240
|||||||||||||||||||||||||||
Sbjct: 39695851 cccctctacatagacgacaccctcacg 39695877
Score = 155 bits (78), Expect = 6e-35
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 240 gatggtgatggaatttcctgacaacgtgttaaatctcgatggtcatcaaaataatggtgc 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39702230 gatggggatggaatttcctgacaacgtgttaaatctcgatggtcatcaaaataatggtgc 39702289
Query: 300 gcaactaaagcagttcattcag 321
||||||||||||||||||||||
Sbjct: 39702290 gcaactaaagcagttcattcag 39702311
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 gcgcggcggcgggtgcttacgctcgcggggtttggctgttgcaggcaggagcagggagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39695638 gcgcggcggcgggtgcttacgctcgcggggtttggctgttgcaggcaggagcagggagga 39695697
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,291,076
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 8
Length of query: 1156
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1135
Effective length of database: 2,808,413,156
Effective search space: 3187548932060
Effective search space used: 3187548932060
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)