Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013174
(1528 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808814.1| peroxisome proliferator-activated receptor gamm... 818 0.0
>ref|NP_808814.1| peroxisome proliferator-activated receptor gamma coactivator 1-alpha
[Bos taurus].
Length = 796
Score = 818 bits (2113), Expect = 0.0
Identities = 407/473 (86%), Positives = 420/473 (88%), Gaps = 1/473 (0%)
Frame = +3
Query: 111 MAWDMCNQDSVWTDIECAALVGXXXXXXXXXXXXXXXXXXVNDLDTDSFLGGLKWCSDQS 290
MAWDMCNQDSVW+DIECAALVG VNDLDTDSFLGGLKWCSDQS
Sbjct: 1 MAWDMCNQDSVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQS 60
Query: 291 EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE 470
EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE
Sbjct: 61 EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE 120
Query: 471 ASPSSMPDGTPPPQEAEEPSXXXXXXXAPANTQLSYNECSGLSTQNHANHNHRIRTNPAV 650
ASPSSMPDGTPPPQEAEEPS APANTQLSYNECSGLSTQNHANHNHRIRTNPAV
Sbjct: 121 ASPSSMPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNPAV 180
Query: 651 VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTETRNSSRDKCTSKKKA 830
VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTE RNSSRDKCTSKKKA
Sbjct: 181 VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKKKA 240
Query: 831 HTQSQSQHLQAKPTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXXXH 1010
HTQSQ+QHLQAKPT+LSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGL H
Sbjct: 241 HTQSQTQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPH 300
Query: 1011 KANQDNPFRASPKLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTS 1190
KANQDNPFRASPKLKP CKTVVPPPSKK RYSESS T G+NSTKKGPEQSELYAQLSKTS
Sbjct: 301 KANQDNPFRASPKLKPSCKTVVPPPSKKARYSESSCTQGSNSTKKGPEQSELYAQLSKTS 360
Query: 1191 ALGGGHEERKARRPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDA-ASDWQK 1367
L GHEERKA+RPSLRLFGDHDYCQSINSK EIL++ SQELHDSRQL++KDA +S+
Sbjct: 361 VLTSGHEERKAKRPSLRLFGDHDYCQSINSKTEILVSTSQELHDSRQLENKDAPSSNGPG 420
Query: 1368 QMCSSTDSDQCYLTETSEASRQVSPGSARKQLQGQEIRGELNKHFGHPSQAVF 1526
Q+ SSTDSD CYL ET+E SRQVSPGS RKQLQ QEIR ELNKHFGHPSQAVF
Sbjct: 421 QIHSSTDSDPCYLRETAEVSRQVSPGSTRKQLQDQEIRAELNKHFGHPSQAVF 473
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,378,461
Number of extensions: 1375660
Number of successful extensions: 5360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5332
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 402
Effective length of database: 14,140,958
Effective search space: 5684665116
Effective search space used: 5684665116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013174
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013174
(1528 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851741.1| PREDICTED: similar to Peroxisome proliferator a... 827 0.0
Alignment gi|XP_864389.1| PREDICTED: similar to Peroxisome proliferator a... 793 0.0
Alignment gi|XP_864370.1| PREDICTED: similar to Peroxisome proliferator a... 534 e-151
Alignment gi|XP_864348.1| PREDICTED: similar to peroxisome proliferative ... 122 1e-27
Alignment gi|XP_546308.2| PREDICTED: similar to PGC-1-related estrogen re... 91 2e-18
>ref|XP_851741.1| PREDICTED: similar to Peroxisome proliferator activated receptor
gamma coactivator 1 alpha (PPAR gamma coactivator-1
alpha) (PPARGC-1 alpha) (PGC-1 alpha) (Ligand effect
modulator-6) isoform 1 [Canis familiaris].
Length = 796
Score = 827 bits (2137), Expect = 0.0
Identities = 409/472 (86%), Positives = 418/472 (88%)
Frame = +3
Query: 111 MAWDMCNQDSVWTDIECAALVGXXXXXXXXXXXXXXXXXXVNDLDTDSFLGGLKWCSDQS 290
MAWDMCNQDSVW+DIECAALVG VNDLDTDSFLGGLKWCSDQS
Sbjct: 1 MAWDMCNQDSVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQS 60
Query: 291 EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE 470
EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE
Sbjct: 61 EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE 120
Query: 471 ASPSSMPDGTPPPQEAEEPSXXXXXXXAPANTQLSYNECSGLSTQNHANHNHRIRTNPAV 650
ASPSS+PDGTPPPQEAEEPS APANTQLSYNECSGLSTQNHANHNHRIRTNPAV
Sbjct: 121 ASPSSVPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNPAV 180
Query: 651 VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTETRNSSRDKCTSKKKA 830
VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTE RNSSRDKCTSKKK+
Sbjct: 181 VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKKKS 240
Query: 831 HTQSQSQHLQAKPTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXXXH 1010
HTQSQSQHLQAKPT+LSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGL H
Sbjct: 241 HTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPH 300
Query: 1011 KANQDNPFRASPKLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTS 1190
KANQDNPFR SPKLK CKTVVPPPSKK RYSE SGT GN STKKGPEQSELYAQLSKTS
Sbjct: 301 KANQDNPFRTSPKLKSSCKTVVPPPSKKPRYSEPSGTQGNTSTKKGPEQSELYAQLSKTS 360
Query: 1191 ALGGGHEERKARRPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQKQ 1370
L GHEERKA+RPSLRLFGDHDYCQSINSK EILINISQEL DSRQL+ KDA+SDWQ Q
Sbjct: 361 VLTSGHEERKAKRPSLRLFGDHDYCQSINSKTEILINISQELQDSRQLEYKDASSDWQGQ 420
Query: 1371 MCSSTDSDQCYLTETSEASRQVSPGSARKQLQGQEIRGELNKHFGHPSQAVF 1526
+CSSTDSDQCYL ETS A +QVSP S RKQLQ QEIR ELNKHFGHPSQAVF
Sbjct: 421 ICSSTDSDQCYLRETSGAGKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVF 472
>ref|XP_864389.1| PREDICTED: similar to Peroxisome proliferator activated receptor
gamma coactivator 1 alpha (PPAR gamma coactivator-1
alpha) (PPARGC-1 alpha) (PGC-1 alpha) (Ligand effect
modulator-6) isoform 5 [Canis familiaris].
Length = 786
Score = 793 bits (2048), Expect = 0.0
Identities = 394/458 (86%), Positives = 404/458 (88%)
Frame = +3
Query: 153 IECAALVGXXXXXXXXXXXXXXXXXXVNDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNI 332
++CAALVG VNDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNI
Sbjct: 5 LKCAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNI 64
Query: 333 FEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENEASPSSMPDGTPPPQ 512
FEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENEASPSS+PDGTPPPQ
Sbjct: 65 FEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENEASPSSVPDGTPPPQ 124
Query: 513 EAEEPSXXXXXXXAPANTQLSYNECSGLSTQNHANHNHRIRTNPAVVKTENSWSNKAKSI 692
EAEEPS APANTQLSYNECSGLSTQNHANHNHRIRTNPAVVKTENSWSNKAKSI
Sbjct: 125 EAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNPAVVKTENSWSNKAKSI 184
Query: 693 CQQQKPQRRPCSELLKYLTTNDDPPHTKPTETRNSSRDKCTSKKKAHTQSQSQHLQAKPT 872
CQQQKPQRRPCSELLKYLTTNDDPPHTKPTE RNSSRDKCTSKKK+HTQSQSQHLQAKPT
Sbjct: 185 CQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKKKSHTQSQSQHLQAKPT 244
Query: 873 SLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXXXHKANQDNPFRASPKL 1052
+LSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGL HKANQDNPFR SPKL
Sbjct: 245 TLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPHKANQDNPFRTSPKL 304
Query: 1053 KPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTSALGGGHEERKARRP 1232
K CKTVVPPPSKK RYSE SGT GN STKKGPEQSELYAQLSKTS L GHEERKA+RP
Sbjct: 305 KSSCKTVVPPPSKKPRYSEPSGTQGNTSTKKGPEQSELYAQLSKTSVLTSGHEERKAKRP 364
Query: 1233 SLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQKQMCSSTDSDQCYLTE 1412
SLRLFGDHDYCQSINSK EILINISQEL DSRQL+ KDA+SDWQ Q+CSSTDSDQCYL E
Sbjct: 365 SLRLFGDHDYCQSINSKTEILINISQELQDSRQLEYKDASSDWQGQICSSTDSDQCYLRE 424
Query: 1413 TSEASRQVSPGSARKQLQGQEIRGELNKHFGHPSQAVF 1526
TS A +QVSP S RKQLQ QEIR ELNKHFGHPSQAVF
Sbjct: 425 TSGAGKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVF 462
>ref|XP_864370.1| PREDICTED: similar to Peroxisome proliferator activated receptor
gamma coactivator 1 alpha (PPAR gamma coactivator-1
alpha) (PPARGC-1 alpha) (PGC-1 alpha) (Ligand effect
modulator-6) isoform 4 [Canis familiaris].
Length = 359
Score = 534 bits (1375), Expect = e-151
Identities = 261/291 (89%), Positives = 265/291 (91%)
Frame = +3
Query: 111 MAWDMCNQDSVWTDIECAALVGXXXXXXXXXXXXXXXXXXVNDLDTDSFLGGLKWCSDQS 290
MAWDMCNQDSVW+DIECAALVG VNDLDTDSFLGGLKWCSDQS
Sbjct: 1 MAWDMCNQDSVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQS 60
Query: 291 EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE 470
EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE
Sbjct: 61 EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE 120
Query: 471 ASPSSMPDGTPPPQEAEEPSXXXXXXXAPANTQLSYNECSGLSTQNHANHNHRIRTNPAV 650
ASPSS+PDGTPPPQEAEEPS APANTQLSYNECSGLSTQNHANHNHRIRTNPAV
Sbjct: 121 ASPSSVPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNPAV 180
Query: 651 VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTETRNSSRDKCTSKKKA 830
VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTE RNSSRDKCTSKKK+
Sbjct: 181 VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKKKS 240
Query: 831 HTQSQSQHLQAKPTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAG 983
HTQSQSQHLQAKPT+LSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAG
Sbjct: 241 HTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAG 291
>ref|XP_864348.1| PREDICTED: similar to peroxisome proliferative activated receptor,
gamma, coactivator 1 alpha isoform 3 [Canis familiaris].
Length = 96
Score = 122 bits (305), Expect = 1e-27
Identities = 58/77 (75%), Positives = 59/77 (76%)
Frame = +3
Query: 111 MAWDMCNQDSVWTDIECAALVGXXXXXXXXXXXXXXXXXXVNDLDTDSFLGGLKWCSDQS 290
MAWDMCNQDSVW+DIECAALVG VNDLDTDSFLGGLKWCSDQS
Sbjct: 1 MAWDMCNQDSVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQS 60
Query: 291 EIISNQYNNEPSNIFEK 341
EIISNQYNNEPSNIFEK
Sbjct: 61 EIISNQYNNEPSNIFEK 77
>ref|XP_546308.2| PREDICTED: similar to PGC-1-related estrogen receptor alpha
coactivator [Canis familiaris].
Length = 1081
Score = 91.3 bits (225), Expect = 2e-18
Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Frame = +3
Query: 234 NDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDE 413
+D D+ + G L+WC + SE +QY+ + S +F+ D ENEA LLA LT+TLD +P D+
Sbjct: 103 SDFDSATCFGELQWCPENSETEPSQYSPDDSELFQITDSENEA-LLAALTKTLDDIPEDD 161
Query: 414 DGLPSFDALTDGDVTTENEASPSSMPDGTPPPQEAEEPSXXXXXXXAPANTQLSYNECSG 593
GL +F AL GD + ASP+ P +PP + PS AP LS +
Sbjct: 162 VGLAAFPALDGGDAPSCTSASPA--PSSSPP---SPSPSLERPQPPAPEVDDLSLLQKLL 216
Query: 594 LSTQNHANHNH-------------RIRTNPAVVKTENSWSNKAKSICQQQKPQRRPCSEL 734
L+T A+ + R R VK +++ KA ++ + Q R C+EL
Sbjct: 217 LATSYPASSSDTQKEGTTWRQAGLRSRNQRPCVKMDSTQDKKAPTV----QSQGRSCTEL 272
Query: 735 LKYLTTNDDPPHTK 776
K+LT+ P TK
Sbjct: 273 HKHLTSVPSCPQTK 286
Score = 72.8 bits (177), Expect = 8e-13
Identities = 55/195 (28%), Positives = 80/195 (41%)
Frame = +3
Query: 921 SPFENKTIERTLSVELSGTAGLXXXXXXXHKANQDNPFRASPKLKPPCKTVVPPPSKKTR 1100
+PF K+ E+TL+VEL GTAGL +K +++PF+ K P + PS +
Sbjct: 647 TPFGRKSFEQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDIKHSPGKDRALSLPSLEGL 706
Query: 1101 YSESSGTHGNNSTKKGPEQSELYAQLSKTSALGGGHEERKARRPSLRLFGDHDYCQSINS 1280
+ KK PE+SEL + L +A +K RP FGDHDYCQ +
Sbjct: 707 QLGPTTAAAPKLPKKHPERSELLSHLRHATAQPASQTGQK--RPFSCSFGDHDYCQVLKP 764
Query: 1281 KAEILINISQELHDSRQLDSKDAASDWQKQMCSSTDSDQCYLTETSEASRQVSPGSARKQ 1460
+ + + R + + Q + Q E + P
Sbjct: 765 EGALQRKV------LRSWEPSGVHLEDCHQQGAPRAEVQASAREEDRSCDSGGPAKDSVP 818
Query: 1461 LQGQEIRGELNKHFG 1505
L+ EIR L KHFG
Sbjct: 819 LRDHEIRASLTKHFG 833
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,780,987
Number of extensions: 1415928
Number of successful extensions: 5307
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5257
Number of HSP's successfully gapped: 6
Length of query: 509
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 402
Effective length of database: 15,307,552
Effective search space: 6153635904
Effective search space used: 6153635904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013174
(1528 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999128.1| peroxisome proliferator-activated receptor gamm... 882 0.0
Alignment gi|XP_003124141.1| PREDICTED: peroxisome proliferator-activated... 94 2e-19
>ref|NP_999128.1| peroxisome proliferator-activated receptor gamma coactivator 1-alpha
[Sus scrofa].
Length = 796
Score = 882 bits (2278), Expect = 0.0
Identities = 436/472 (92%), Positives = 437/472 (92%)
Frame = +3
Query: 111 MAWDMCNQDSVWTDIECAALVGXXXXXXXXXXXXXXXXXXVNDLDTDSFLGGLKWCSDQS 290
MAWDMCNQDSVWTDIECAALVG VNDLDTDSFLGGLKWCSDQS
Sbjct: 1 MAWDMCNQDSVWTDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQS 60
Query: 291 EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE 470
EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE
Sbjct: 61 EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE 120
Query: 471 ASPSSMPDGTPPPQEAEEPSXXXXXXXAPANTQLSYNECSGLSTQNHANHNHRIRTNPAV 650
ASPSSMPDGTPPPQEAEEPS APANTQLSYNECSGLSTQNHANHNHRIRTNPAV
Sbjct: 121 ASPSSMPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNPAV 180
Query: 651 VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTETRNSSRDKCTSKKKA 830
VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTETRNSSRDKCTSKKKA
Sbjct: 181 VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTETRNSSRDKCTSKKKA 240
Query: 831 HTQSQSQHLQAKPTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXXXH 1010
HTQSQSQHLQAKPTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGL H
Sbjct: 241 HTQSQSQHLQAKPTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPH 300
Query: 1011 KANQDNPFRASPKLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTS 1190
KANQDNPFRASPKLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTS
Sbjct: 301 KANQDNPFRASPKLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTS 360
Query: 1191 ALGGGHEERKARRPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQKQ 1370
ALGGGHEERKARRPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQ+Q
Sbjct: 361 ALGGGHEERKARRPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQRQ 420
Query: 1371 MCSSTDSDQCYLTETSEASRQVSPGSARKQLQGQEIRGELNKHFGHPSQAVF 1526
MCSSTDSDQ YLTETSEASRQVSPGSARKQLQ QEIR ELNKHFGHPSQAVF
Sbjct: 421 MCSSTDSDQSYLTETSEASRQVSPGSARKQLQDQEIRAELNKHFGHPSQAVF 472
>ref|XP_003124141.1| PREDICTED: peroxisome proliferator-activated receptor gamma
coactivator 1-beta [Sus scrofa].
Length = 1019
Score = 94.4 bits (233), Expect = 2e-19
Identities = 67/190 (35%), Positives = 98/190 (51%), Gaps = 8/190 (4%)
Frame = +3
Query: 231 VNDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVD 410
V DLD+ + L+WC + +E +QY+ + +F+ ID ENEA LLA LTE+L +P D
Sbjct: 43 VGDLDSATCFEELQWCPESAEADPSQYSPRDAELFQIIDSENEA-LLAALTESLGDIPED 101
Query: 411 EDGLPSFDALTDGDVTT-------ENEASPSSMPDGTP-PPQEAEEPSXXXXXXXAPANT 566
+ GL +F AL DGD + + A PS P+G P P EAEE S A ++
Sbjct: 102 DVGLAAFPALDDGDSPSCASASPAPSSAPPSPAPEGAPGPAPEAEELSLLQKLLLAASSP 161
Query: 567 QLSYNECSGLSTQNHANHNHRIRTNPAVVKTENSWSNKAKSICQQQKPQRRPCSELLKYL 746
L+ + + A R R+ VKT+++ KA + +PQ R C+EL K+L
Sbjct: 162 TLTSDSQKEGTAWRQA--GLRSRSQRPGVKTDSTQDRKAPT----SQPQSRACTELHKHL 215
Query: 747 TTNDDPPHTK 776
T+ P K
Sbjct: 216 TSAPSCPRAK 225
Score = 68.2 bits (165), Expect = 1e-11
Identities = 61/216 (28%), Positives = 84/216 (38%), Gaps = 3/216 (1%)
Frame = +3
Query: 867 PTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXXXHKANQDNPFRASP 1046
P L L L+ P PF K E+TL+VEL GTAGL +K + F+
Sbjct: 574 PRCLMLALSQSDP------PFGKKNCEQTLAVELCGTAGLTPPTTPPYKPADEELFKPDV 627
Query: 1047 KLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTSALGGGHEERKAR 1226
K P P + ++G + KK PE+ EL + L +A K
Sbjct: 628 KHSPGRDAAPRLPPEGLPLGAAAGA-AHTLPKKHPERRELLSHLRHVTAPPASQAGHK-- 684
Query: 1227 RPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQKQMCSSTDSDQCYL 1406
RP FGDHDYCQ + + + + + S DW +Q ++
Sbjct: 685 RPFSCSFGDHDYCQVLKPEGALQRKVLRSWEPSGA-----PPEDWPQQGAPRAEAQ---- 735
Query: 1407 TETSEASRQVSPGSARKQ---LQGQEIRGELNKHFG 1505
E G+A K L+ EIR L KHFG
Sbjct: 736 ASGREEGSGCDIGAASKDSALLRDHEIRASLTKHFG 771
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,556,958
Number of extensions: 877300
Number of successful extensions: 3308
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3284
Number of HSP's successfully gapped: 3
Length of query: 509
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 406
Effective length of database: 8,779,541
Effective search space: 3564493646
Effective search space used: 3564493646
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013174
(1528 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032930.1| peroxisome proliferator-activated receptor gamm... 798 0.0
Alignment gi|NP_573512.1| peroxisome proliferator-activated receptor gamm... 82 9e-16
>ref|NP_032930.1| peroxisome proliferator-activated receptor gamma coactivator 1-alpha
[Mus musculus].
Length = 797
Score = 798 bits (2062), Expect = 0.0
Identities = 393/473 (83%), Positives = 412/473 (87%), Gaps = 1/473 (0%)
Frame = +3
Query: 111 MAWDMCNQDSVWTDIECAALVGXXXXXXXXXXXXXXXXXXVNDLDTDSFLGGLKWCSDQS 290
MAWDMC+QDSVW+DIECAALVG VNDLDTDSFLGGLKWCSDQS
Sbjct: 1 MAWDMCSQDSVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQS 60
Query: 291 EIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTENE 470
EIISNQYNNEP+NIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDG VTT+NE
Sbjct: 61 EIISNQYNNEPANIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGAVTTDNE 120
Query: 471 ASPSSMPDGTPPPQEAEEPSXXXXXXXAPANTQLSYNECSGLSTQNHA-NHNHRIRTNPA 647
ASPSSMPDGTPPPQEAEEPS APANTQLSYNECSGLSTQNHA NH HRIRTNPA
Sbjct: 121 ASPSSMPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHAANHTHRIRTNPA 180
Query: 648 VVKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTETRNSSRDKCTSKKK 827
+VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTE RNSSRDKC SKKK
Sbjct: 181 IVKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCASKKK 240
Query: 828 AHTQSQSQHLQAKPTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXXX 1007
+HTQ QSQH QAKPT+LSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGL
Sbjct: 241 SHTQPQSQHAQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPP 300
Query: 1008 HKANQDNPFRASPKLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKT 1187
HKANQDNPF+ASPKLKP CKTVVPPP+K+ RYSE SGT G++STKKGPEQSELYAQLSK+
Sbjct: 301 HKANQDNPFKASPKLKPSCKTVVPPPTKRARYSECSGTQGSHSTKKGPEQSELYAQLSKS 360
Query: 1188 SALGGGHEERKARRPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQK 1367
S L GHEERK +RPSLRLFGDHDYCQS+NSK +ILINISQEL DSRQLD KDA+ DWQ
Sbjct: 361 SGLSRGHEERKTKRPSLRLFGDHDYCQSLNSKTDILINISQELQDSRQLDFKDASCDWQG 420
Query: 1368 QMCSSTDSDQCYLTETSEASRQVSPGSARKQLQGQEIRGELNKHFGHPSQAVF 1526
+CSSTDS QCYL ET EAS+QVSP S RKQLQ QEIR ELNKHFGHP QAVF
Sbjct: 421 HICSSTDSGQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPCQAVF 473
>ref|NP_573512.1| peroxisome proliferator-activated receptor gamma coactivator 1-beta
[Mus musculus].
Length = 1014
Score = 82.4 bits (202), Expect = 9e-16
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 8/206 (3%)
Frame = +3
Query: 234 NDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDE 413
+D D+ + G L+WC + SE +QY+ + S +F+ ID ENEA LLA LT+TLD +P D+
Sbjct: 50 SDFDSATCFGELQWCPETSETEPSQYSPDDSELFQ-IDSENEA-LLAALTKTLDDIPEDD 107
Query: 414 DGLPSFDALTDGDVTTENEASP---SSMPDGT-----PPPQEAEEPSXXXXXXXAPANTQ 569
GL +F L +GD + ASP S+ P T P + +E S A ++
Sbjct: 108 VGLAAFPELDEGDTPSCTPASPAPLSAPPSPTLERLLSPASDVDELSLLQKLLLATSSPT 167
Query: 570 LSYNECSGLSTQNHANHNHRIRTNPAVVKTENSWSNKAKSICQQQKPQRRPCSELLKYLT 749
S + +T + + + R+ VK + + K ++ + Q RPC+EL K+LT
Sbjct: 168 ASSDALKDGATWSQTSLSS--RSQRPCVKVDGTQDKKTPTL----RAQSRPCTELHKHLT 221
Query: 750 TNDDPPHTKPTETRNSSRDKCTSKKK 827
+ P K + SK++
Sbjct: 222 SVLPCPRVKACSPTPHPSPRLLSKEE 247
Score = 75.5 bits (184), Expect = 1e-13
Identities = 82/306 (26%), Positives = 119/306 (38%), Gaps = 33/306 (10%)
Frame = +3
Query: 687 SICQQQKPQRRPCSELLKYLTTNDDPPHTKP-----TETRNSSRD--KCTSKKKAHTQSQ 845
S+C ++ RR EL +LT D+P P TET N D T + Q
Sbjct: 473 SVCPVRR-SRRLNPELGPWLTFTDEPLGALPSMCLDTETHNLEEDLGSLTDSSQGRQLPQ 531
Query: 846 SQHLQA--KPTSLSLPLTPESPNDPKGSPFEN----------------KTIERTLSVELS 971
+ A P T E P+ P+ + ++ K+ E +L+VEL
Sbjct: 532 GSQIPALESPCESGCGDTDEDPSCPQPTSRDSSRCLMLALSQSDSLGKKSFEESLTVELC 591
Query: 972 GTAGLXXXXXXXHKANQDNPFRASPKLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGP 1151
GTAGL +K +++PF+ KL P T PS + ++ + K+ P
Sbjct: 592 GTAGLTPPTTPPYKPMEEDPFKPDTKLSPGQDTAPSLPSPEALPLTATPGASHKLPKRHP 651
Query: 1152 EQSELYAQLSKTSALGGGHEERKARRPSLRLFGDHDYCQSINSKAEILINISQELHDSRQ 1331
E+SEL + L + +K RP FGDHDYCQ + +A +
Sbjct: 652 ERSELLSHLQHATTQPVSQAGQK--RPFSCSFGDHDYCQVLRPEAAL------------- 696
Query: 1332 LDSKDAASDWQKQMCSSTDSDQ---CYLTETS----EASRQVSP-GSARKQLQGQEIRGE 1487
+ W+ D Q TET EA++ P QL+ EIR
Sbjct: 697 --QRKVLRSWEPIGVHLEDLAQQGAPLPTETKAPRREANQNCDPTHKDSMQLRDHEIRAS 754
Query: 1488 LNKHFG 1505
L KHFG
Sbjct: 755 LTKHFG 760
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,404,398
Number of extensions: 1194787
Number of successful extensions: 4875
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4831
Number of HSP's successfully gapped: 3
Length of query: 509
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 403
Effective length of database: 12,433,743
Effective search space: 5010798429
Effective search space used: 5010798429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013174
(1528 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037393.1| peroxisome proliferator-activated receptor gamm... 829 0.0
Alignment gi|NP_573570.3| peroxisome proliferator-activated receptor gamm... 86 7e-17
Alignment gi|NP_001166170.1| peroxisome proliferator-activated receptor g... 80 5e-15
Alignment gi|NP_001166169.1| peroxisome proliferator-activated receptor g... 80 5e-15
>ref|NP_037393.1| peroxisome proliferator-activated receptor gamma coactivator 1-alpha
[Homo sapiens].
Length = 798
Score = 829 bits (2141), Expect = 0.0
Identities = 410/474 (86%), Positives = 422/474 (89%), Gaps = 2/474 (0%)
Frame = +3
Query: 111 MAWDMCNQDS--VWTDIECAALVGXXXXXXXXXXXXXXXXXXVNDLDTDSFLGGLKWCSD 284
MAWDMCNQDS VW+DIECAALVG VNDLDTDSFLGGLKWCSD
Sbjct: 1 MAWDMCNQDSESVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSD 60
Query: 285 QSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTE 464
QSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTT+
Sbjct: 61 QSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTD 120
Query: 465 NEASPSSMPDGTPPPQEAEEPSXXXXXXXAPANTQLSYNECSGLSTQNHANHNHRIRTNP 644
NEASPSSMPDGTPPPQEAEEPS APANTQLSYNECSGLSTQNHANHNHRIRTNP
Sbjct: 121 NEASPSSMPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNP 180
Query: 645 AVVKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTETRNSSRDKCTSKK 824
A+VKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTE RNSSRDKCTSKK
Sbjct: 181 AIVKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKK 240
Query: 825 KAHTQSQSQHLQAKPTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXX 1004
K+HTQSQSQHLQAKPT+LSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGL
Sbjct: 241 KSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTP 300
Query: 1005 XHKANQDNPFRASPKLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSK 1184
HKANQDNPFRASPKLK CKTVVPPPSKK RYSESSGT GNNSTKKGPEQSELYAQLSK
Sbjct: 301 PHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQGNNSTKKGPEQSELYAQLSK 360
Query: 1185 TSALGGGHEERKARRPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQ 1364
+S L GGHEERK +RPSLRLFGDHDYCQSINSK EILINISQEL DSRQL++KD +SDWQ
Sbjct: 361 SSVLTGGHEERKTKRPSLRLFGDHDYCQSINSKTEILINISQELQDSRQLENKDVSSDWQ 420
Query: 1365 KQMCSSTDSDQCYLTETSEASRQVSPGSARKQLQGQEIRGELNKHFGHPSQAVF 1526
Q+CSSTDSDQCYL ET EAS+QVSP S RKQLQ QEIR ELNKHFGHPSQAVF
Sbjct: 421 GQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVF 474
>ref|NP_573570.3| peroxisome proliferator-activated receptor gamma coactivator 1-beta
isoform 1 [Homo sapiens].
Length = 1023
Score = 86.3 bits (212), Expect = 7e-17
Identities = 64/186 (34%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Frame = +3
Query: 234 NDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDE 413
+D D+ + G L+WC + SE NQY+ + S +F+ ID ENEA LLA LT+TLD +P D+
Sbjct: 50 SDFDSATCFGELQWCPENSETEPNQYSPDDSELFQ-IDSENEA-LLAELTKTLDDIPEDD 107
Query: 414 DGLPSFDALTDGDVTTENEASPSSMPDGTPPPQEAEEPSXXXXXXXAPANTQLSYNECSG 593
GL +F AL GD + ASP+ P PP E+PS AP +LS +
Sbjct: 108 VGLAAFPALDGGDALSCTSASPA--PSSAPPSPAPEKPS-----APAPEVDELSLLQKLL 160
Query: 594 LSTQNHANHNH-------------RIRTNPAVVKTENSWSNKAKSICQQQKPQRRPCSEL 734
L+T + + R ++ VK +++ KA + Q R C+EL
Sbjct: 161 LATSYPTSSSDTQKEGTAWRQAGLRSKSQRPCVKADSTQDKKA----PMMQSQSRSCTEL 216
Query: 735 LKYLTT 752
K+LT+
Sbjct: 217 HKHLTS 222
Score = 73.2 bits (178), Expect = 6e-13
Identities = 60/213 (28%), Positives = 91/213 (42%)
Frame = +3
Query: 867 PTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXXXHKANQDNPFRASP 1046
P L L L+ P F K+ E+TL+VEL GTAGL +K +++PF+
Sbjct: 571 PRCLMLALSQSDPT------FGKKSFEQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDI 624
Query: 1047 KLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTSALGGGHEERKAR 1226
K + + PS + +++ + KK PE+SEL + L +A +K
Sbjct: 625 KHSLGKEIALSLPSPEGLSLKATPGAAHKLPKKHPERSELLSHLRHATAQPASQAGQK-- 682
Query: 1227 RPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQKQMCSSTDSDQCYL 1406
RP FGDHDYCQ + + + + + S DW +Q ++ Q
Sbjct: 683 RPFSCSFGDHDYCQVLRPEGVLQRKVLRSWEPSGV-----HLEDWPQQGAPWAEA-QAPG 736
Query: 1407 TETSEASRQVSPGSARKQLQGQEIRGELNKHFG 1505
E + +P L+ EIR L KHFG
Sbjct: 737 REEDRSCDAGAPPKDSTLLRDHEIRASLTKHFG 769
>ref|NP_001166170.1| peroxisome proliferator-activated receptor gamma coactivator 1-beta
isoform 3 [Homo sapiens].
Length = 959
Score = 80.1 bits (196), Expect = 5e-15
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +3
Query: 234 NDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDE 413
+D D+ + G L+WC + SE NQY+ + S +F+ ID ENEA LLA LT+TLD +P D+
Sbjct: 25 SDFDSATCFGELQWCPENSETEPNQYSPDDSELFQ-IDSENEA-LLAELTKTLDDIPEDD 82
Query: 414 DGLPSFDALTDGDVTTENEASPSSMPDGTPPPQEAEEPS 530
GL +F AL GD + ASP+ P PP E+PS
Sbjct: 83 VGLAAFPALDGGDALSCTSASPA--PSSAPPSPAPEKPS 119
Score = 73.2 bits (178), Expect = 6e-13
Identities = 60/213 (28%), Positives = 91/213 (42%)
Frame = +3
Query: 867 PTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXXXHKANQDNPFRASP 1046
P L L L+ P F K+ E+TL+VEL GTAGL +K +++PF+
Sbjct: 507 PRCLMLALSQSDPT------FGKKSFEQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDI 560
Query: 1047 KLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTSALGGGHEERKAR 1226
K + + PS + +++ + KK PE+SEL + L +A +K
Sbjct: 561 KHSLGKEIALSLPSPEGLSLKATPGAAHKLPKKHPERSELLSHLRHATAQPASQAGQK-- 618
Query: 1227 RPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQKQMCSSTDSDQCYL 1406
RP FGDHDYCQ + + + + + S DW +Q ++ Q
Sbjct: 619 RPFSCSFGDHDYCQVLRPEGVLQRKVLRSWEPSGV-----HLEDWPQQGAPWAEA-QAPG 672
Query: 1407 TETSEASRQVSPGSARKQLQGQEIRGELNKHFG 1505
E + +P L+ EIR L KHFG
Sbjct: 673 REEDRSCDAGAPPKDSTLLRDHEIRASLTKHFG 705
>ref|NP_001166169.1| peroxisome proliferator-activated receptor gamma coactivator 1-beta
isoform 2 [Homo sapiens].
Length = 984
Score = 80.1 bits (196), Expect = 5e-15
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +3
Query: 234 NDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDE 413
+D D+ + G L+WC + SE NQY+ + S +F+ ID ENEA LLA LT+TLD +P D+
Sbjct: 50 SDFDSATCFGELQWCPENSETEPNQYSPDDSELFQ-IDSENEA-LLAELTKTLDDIPEDD 107
Query: 414 DGLPSFDALTDGDVTTENEASPSSMPDGTPPPQEAEEPS 530
GL +F AL GD + ASP+ P PP E+PS
Sbjct: 108 VGLAAFPALDGGDALSCTSASPA--PSSAPPSPAPEKPS 144
Score = 73.2 bits (178), Expect = 6e-13
Identities = 60/213 (28%), Positives = 91/213 (42%)
Frame = +3
Query: 867 PTSLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLXXXXXXXHKANQDNPFRASP 1046
P L L L+ P F K+ E+TL+VEL GTAGL +K +++PF+
Sbjct: 532 PRCLMLALSQSDPT------FGKKSFEQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDI 585
Query: 1047 KLKPPCKTVVPPPSKKTRYSESSGTHGNNSTKKGPEQSELYAQLSKTSALGGGHEERKAR 1226
K + + PS + +++ + KK PE+SEL + L +A +K
Sbjct: 586 KHSLGKEIALSLPSPEGLSLKATPGAAHKLPKKHPERSELLSHLRHATAQPASQAGQK-- 643
Query: 1227 RPSLRLFGDHDYCQSINSKAEILINISQELHDSRQLDSKDAASDWQKQMCSSTDSDQCYL 1406
RP FGDHDYCQ + + + + + S DW +Q ++ Q
Sbjct: 644 RPFSCSFGDHDYCQVLRPEGVLQRKVLRSWEPSGV-----HLEDWPQQGAPWAEA-QAPG 697
Query: 1407 TETSEASRQVSPGSARKQLQGQEIRGELNKHFG 1505
E + +P L+ EIR L KHFG
Sbjct: 698 REEDRSCDAGAPPKDSTLLRDHEIRASLTKHFG 730
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,881,608
Number of extensions: 1409515
Number of successful extensions: 5512
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5470
Number of HSP's successfully gapped: 7
Length of query: 509
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 402
Effective length of database: 14,770,016
Effective search space: 5937546432
Effective search space used: 5937546432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013174
(1528 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896199.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1049 0.0
Sscrofa_Chr08 313 2e-82
>gb|GL896199.1| Sus scrofa unplaced genomic scaffold chrU_scaffold563
Length = 57561
Score = 1049 bits (529), Expect = 0.0
Identities = 544/549 (99%)
Strand = Plus / Minus
Query: 980 aggcctaactccacccacaactcctcctcataaagccaaccaagataacccttttagggc 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35400 aggcctaactccacccacaactcctcctcataaagccaaccaagataacccttttagggc 35341
Query: 1040 ttctccaaagctgaagcccccttgcaagactgtggtacctccgccatcgaagaagacccg 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35340 ttctccaaagctgaagcccccttgcaagactgtggtacctccgccatcgaagaagacccg 35281
Query: 1100 gtacagtgagtcttcggggacccacggcaacaactccaccaagaaagggcccgagcagtc 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35280 gtacagtgagtcttcggggacccacggcaacaactccaccaagaaagggcccgagcagtc 35221
Query: 1160 cgagctgtacgcgcagctcagcaagacgtccgcgctcggcggcggacacgaggaacggaa 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35220 cgagctgtacgcgcagctcagcaagacgtccgcgctcggcggcggacacgaggaacggaa 35161
Query: 1220 ggccaggcggcccagtctgcggctatttggtgaccatgactattgtcagtcgattaattc 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35160 ggccaggcggcccagtctgcggctatttggtgaccatgactattgtcagtcgattaattc 35101
Query: 1280 caaagcggaaatcctcatcaatatatcgcaggagctccacgactccagacaactagactc 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35100 caaagcggaaatcctcatcaatatatcgcaggagctccacgactccagacaactagactc 35041
Query: 1340 taaagatgccgcctctgactggcagaagcagatgtgttcttccacagactcagaccagtg 1399
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 35040 taaagatgccgcctctgactggcagaggcagatgtgttcttccacagactcagaccagtg 34981
Query: 1400 ctacctgaccgagacgtcggaagcgagcaggcaggtctctccgggcagcgcccgaaaaca 1459
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 34980 ctacctgaccgagacgtcggaggcgagcaggcaggtctctccgggcagcgcccgaaaaca 34921
Query: 1460 gctccaaggacaggaaatccgaggcgagctgaacaagcacttcggtcatcccagtcaagc 1519
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 34920 gctccaagaccaggaaatccgagccgagctgaacaagcacttcggtcatcccagtcaagc 34861
Query: 1520 tgtttttga 1528
|||||||||
Sbjct: 34860 tgtttttga 34852
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Minus
Query: 337 agaagatagatgaagagaatgaggcaaacttgctagcagttctcacagagacgctggaca 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57260 agaagatagatgaagagaatgaggcaaacttgctagcagttctcacagagacgctggaca 57201
Query: 397 gtctccctgtggatgaagacggattgccctcatttgatgcactgacagatggagatgtga 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57200 gtctccctgtggatgaagacggattgccctcatttgatgcactgacagatggagatgtga 57141
Query: 457 ccactgagaatgaggctagtccttcctccatgcctgacggcacccctccgcctcaggagg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57140 ccactgagaatgaggctagtccttcctccatgcctgacggcacccctccgcctcaggagg 57081
Query: 517 cagaagagccgtctcta 533
|||||||||||||||||
Sbjct: 57080 cagaagagccgtctcta 57064
Score = 355 bits (179), Expect = 5e-95
Identities = 182/183 (99%)
Strand = Plus / Minus
Query: 679 aagcgaagagcatttgtcaacagcaaaagccacaaagacgtccatgctccgagcttctca 738
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53355 aagcgaagaggatttgtcaacagcaaaagccacaaagacgtccatgctccgagcttctca 53296
Query: 739 agtatctgaccacaaatgatgaccctcctcacaccaaacccacagagacccgaaacagta 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53295 agtatctgaccacaaatgatgaccctcctcacaccaaacccacagagacccgaaacagta 53236
Query: 799 gcagagacaagtgcacctccaaaaagaaggcccacacacaatcgcagtcgcaacatttac 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53235 gcagagacaagtgcacctccaaaaagaaggcccacacacaatcgcagtcgcaacatttac 53176
Query: 859 aag 861
|||
Sbjct: 53175 aag 53173
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 534 cttaagaagctcttactggcaccagccaacactcagctaagttataatgaatgcagtggt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54476 cttaagaagctcttactggcaccagccaacactcagctaagttataatgaatgcagtggt 54417
Query: 594 ctcagtacccagaaccatgcaaaccacaatcacaggatcagaacaaaccctgcagttgtt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54416 ctcagtacccagaaccatgcaaaccacaatcacaggatcagaacaaaccctgcagttgtt 54357
Query: 654 aag 656
|||
Sbjct: 54356 aag 54354
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 908 tgaccccaagggttccccatttgagaacaagactattgaacgaaccttaagtgtggaact 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48808 tgaccccaagggttccccatttgagaacaagactattgaacgaaccttaagtgtggaact 48749
Query: 968 ctctggaactgcagg 982
|||||||||||||||
Sbjct: 48748 ctctggaactgcagg 48734
Score = 95.6 bits (48), Expect = 7e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 860 agccaaaccaacatctttatctcttcctctgaccccagagtcaccaaa 907
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48965 agccaaaccaacatctttatctcttcctctgaccccagagtcaccaaa 48918
>Sscrofa_Chr08
|| Length = 148491826
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 1 ggtgccttcagttcactctcagtaaggggctggttgcctgcatgagtgtgtgctctgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18238795 ggtgccttcagttcactctcagtaaggggctggttgcctgcatgagtgtgtgctctgtgt 18238736
Query: 61 cactgtggattggagttgaaacagcttgacgagcgtcattcaggagctggatggcgtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18238735 cactgtggattggagttgaaacagcttgacgagcgtcattcaggagctggatggcgtggg 18238676
Query: 121 acatgtgcaaccaggactctgtatggactgacatcgag 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 18238675 acatgtgcaaccaggactctgtatggactgacatcgag 18238638
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,858,503
Number of extensions: 335
Number of successful extensions: 335
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 7
Length of query: 1528
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1507
Effective length of database: 2,808,413,156
Effective search space: 4232278626092
Effective search space used: 4232278626092
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)