Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013175
(1734 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039717.1| lipopolysaccharide-induced TNF factor [Bos t... 228 1e-59
Alignment gi|NP_001014892.1| LITAF-like protein [Bos taurus]. 67 4e-11
>ref|NP_001039717.1| lipopolysaccharide-induced TNF factor [Bos taurus].
Length = 161
Score = 228 bits (581), Expect = 1e-59
Identities = 110/161 (68%), Positives = 115/161 (71%)
Frame = +1
Query: 43 MSAPGAYQXXXXXXXXXXXXXXYEETLAVNSYYXXXXXXXXXXXXXLMTGPDGKGMNPPG 222
MS PG+YQ YEET+AVNSYY LMTGPDGKGMNPP
Sbjct: 1 MSVPGSYQAAAGPSAVPTAPPSYEETVAVNSYYPTPPAPTPGPNTGLMTGPDGKGMNPPA 60
Query: 223 YYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWXXXX 402
YYTQPVPVPNANAIAVQTVYVQQP+SF+DRPVQMCCPSCNKMIVTQLSYNAG LTW
Sbjct: 61 YYTQPVPVPNANAIAVQTVYVQQPISFYDRPVQMCCPSCNKMIVTQLSYNAGALTWLSCG 120
Query: 403 XXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
FIPFCVDALQDVDH+CPNCKALLGTYKRL
Sbjct: 121 SLCLLGCIAGCCFIPFCVDALQDVDHHCPNCKALLGTYKRL 161
>ref|NP_001014892.1| LITAF-like protein [Bos taurus].
Length = 208
Score = 67.4 bits (163), Expect = 4e-11
Identities = 38/103 (36%), Positives = 50/103 (48%)
Frame = +1
Query: 217 PGYYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWXX 396
PG +T V VP+ A TV V Q F PVQ CP C + I T++SY G + +
Sbjct: 108 PGGHTATVLVPSG---AATTVTVLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVL 164
Query: 397 XXXXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
IP ++ +DV H CP+CKA + TYKRL
Sbjct: 165 GFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 207
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,698,517
Number of extensions: 2098606
Number of successful extensions: 6950
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6944
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 470
Effective length of database: 14,107,870
Effective search space: 6630698900
Effective search space used: 6630698900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013175
(1734 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547124.2| PREDICTED: similar to LPS-induced TN factor [Ca... 228 2e-59
Alignment gi|XP_546321.1| PREDICTED: similar to LPS-induced TN factor [Ca... 187 2e-49
Alignment gi|XP_547145.2| PREDICTED: similar to CG32280-PA, isoform A [Ca... 69 1e-11
>ref|XP_547124.2| PREDICTED: similar to LPS-induced TN factor [Canis familiaris].
Length = 161
Score = 228 bits (580), Expect = 2e-59
Identities = 109/161 (67%), Positives = 115/161 (71%)
Frame = +1
Query: 43 MSAPGAYQXXXXXXXXXXXXXXYEETLAVNSYYXXXXXXXXXXXXXLMTGPDGKGMNPPG 222
MS PG+YQ YEET+AVNSY+ L+TGPDGKGMNPP
Sbjct: 1 MSVPGSYQAAAGPSSVPTAPPSYEETVAVNSYFPMPPAPAPGPTTGLVTGPDGKGMNPPA 60
Query: 223 YYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWXXXX 402
YYTQPVPVPNANAIAVQTVYVQQP+SFFDRP+QMCCPSCNKMIVTQLSYNAG LTW
Sbjct: 61 YYTQPVPVPNANAIAVQTVYVQQPISFFDRPIQMCCPSCNKMIVTQLSYNAGALTWLSCG 120
Query: 403 XXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
FIPFCVDALQDVDHYCPNCKALLGTYKRL
Sbjct: 121 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCKALLGTYKRL 161
>ref|XP_546321.1| PREDICTED: similar to LPS-induced TN factor [Canis familiaris].
Length = 172
Score = 187 bits (474), Expect(2) = 2e-49
Identities = 91/139 (65%), Positives = 99/139 (71%)
Frame = +1
Query: 109 YEETLAVNSYYXXXXXXXXXXXXXLMTGPDGKGMNPPGYYTQPVPVPNANAIAVQTVYVQ 288
YEE +AVNSY+ L+TG DGKGMNPP YYTQPVPVP+ANAIA+QTVYVQ
Sbjct: 34 YEEMVAVNSYFPMPPGPAPGSTPGLVTGLDGKGMNPPAYYTQPVPVPSANAIAMQTVYVQ 93
Query: 289 QPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWXXXXXXXXXXXXXXXXFIPFCVDALQ 468
QP+ FDR +QMCCPSCNKMI TQLSY+AG LTW FIPFCVDALQ
Sbjct: 94 QPIFLFDRLIQMCCPSCNKMIETQLSYDAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQ 153
Query: 469 DVDHYCPNCKALLGTYKRL 525
DVD CPNCKALLGTYK L
Sbjct: 154 DVDLSCPNCKALLGTYKCL 172
Score = 29.3 bits (64), Expect(2) = 2e-49
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 48 CSRSLPGGRWAFLGTHLAP 104
CSR L G RWAFLG P
Sbjct: 14 CSRILAGSRWAFLGAICTP 32
>ref|XP_547145.2| PREDICTED: similar to CG32280-PA, isoform A [Canis familiaris].
Length = 208
Score = 68.9 bits (167), Expect = 1e-11
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = +1
Query: 190 GPDGKGMNP-PGYYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLS 366
GP G P PG +T V VP+ A TV V Q F PVQ CP C + I T++S
Sbjct: 98 GPYPPGPYPGPGGHTATVLVPSG---AATTVTVLQGEIFEGAPVQTVCPHCQQAITTKIS 154
Query: 367 YNAGTLTWXXXXXXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
Y G + + IP ++ +DV H CP+CKA + TYKRL
Sbjct: 155 YEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 207
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,927,881
Number of extensions: 2037342
Number of successful extensions: 6780
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6775
Number of HSP's successfully gapped: 4
Length of query: 578
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 470
Effective length of database: 15,274,216
Effective search space: 7178881520
Effective search space used: 7178881520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013175
(1734 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124641.1| PREDICTED: lipopolysaccharide-induced tumor ... 239 3e-63
Alignment gi|XP_003124685.1| PREDICTED: LITAF-like protein-like [Sus scro... 69 8e-12
>ref|XP_003124641.1| PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha
factor homolog [Sus scrofa].
Length = 161
Score = 239 bits (611), Expect = 3e-63
Identities = 118/161 (73%), Positives = 118/161 (73%)
Frame = +1
Query: 43 MSAPGAYQXXXXXXXXXXXXXXYEETLAVNSYYXXXXXXXXXXXXXLMTGPDGKGMNPPG 222
MSAPGAYQ YEETLAVNSYY LMTGPDGKGMNPPG
Sbjct: 1 MSAPGAYQAAAGPSSAPTSPPSYEETLAVNSYYPTPPAPVPGPTTGLMTGPDGKGMNPPG 60
Query: 223 YYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWXXXX 402
YYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTW
Sbjct: 61 YYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWLSCG 120
Query: 403 XXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
FIPFCVDALQDVDHYCPNCKALLGTYKRL
Sbjct: 121 SLCLLGCVAGCCFIPFCVDALQDVDHYCPNCKALLGTYKRL 161
>ref|XP_003124685.1| PREDICTED: LITAF-like protein-like [Sus scrofa].
Length = 208
Score = 68.9 bits (167), Expect = 8e-12
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = +1
Query: 190 GPDGKGMNP-PGYYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLS 366
GP G P PG +T V VP+ A TV V Q F PVQ CP C + I T++S
Sbjct: 98 GPYPPGPYPGPGGHTATVLVPSG---AATTVTVLQGEIFEGAPVQTVCPHCQQAITTKIS 154
Query: 367 YNAGTLTWXXXXXXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
Y G + + IP ++ +DV H CP+CKA + TYKRL
Sbjct: 155 YEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 207
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,823,528
Number of extensions: 1533500
Number of successful extensions: 4571
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4561
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 474
Effective length of database: 8,754,644
Effective search space: 4149701256
Effective search space used: 4149701256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013175
(1734 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064364.1| lipopolysaccharide-induced tumor necrosis facto... 226 4e-59
Alignment gi|NP_079946.2| LITAF-like protein [Mus musculus]. 69 1e-11
Alignment gi|XP_489506.3| PREDICTED: lipopolysaccharide-induced tumor nec... 58 2e-08
Alignment gi|XP_622598.3| PREDICTED: lipopolysaccharide-induced tumor nec... 58 2e-08
>ref|NP_064364.1| lipopolysaccharide-induced tumor necrosis factor-alpha factor
homolog [Mus musculus].
Length = 161
Score = 226 bits (576), Expect = 4e-59
Identities = 110/161 (68%), Positives = 114/161 (70%)
Frame = +1
Query: 43 MSAPGAYQXXXXXXXXXXXXXXYEETLAVNSYYXXXXXXXXXXXXXLMTGPDGKGMNPPG 222
MSAPG YQ YEET+ VNSYY L+TGPDGKGMNPP
Sbjct: 1 MSAPGPYQAAAGPSVVPTAPPTYEETVGVNSYYPTPPAPMPGPATGLITGPDGKGMNPPS 60
Query: 223 YYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWXXXX 402
YYTQPVPVPNANAIAVQTVYVQQPVSF+DRPVQMCCPSC+KMIVTQLSYNAG LTW
Sbjct: 61 YYTQPVPVPNANAIAVQTVYVQQPVSFYDRPVQMCCPSCSKMIVTQLSYNAGALTWLSCG 120
Query: 403 XXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
FIPFCVDALQDVDHYCPNCKALLGTYKRL
Sbjct: 121 SLCLLGCVAGCCFIPFCVDALQDVDHYCPNCKALLGTYKRL 161
>ref|NP_079946.2| LITAF-like protein [Mus musculus].
Length = 208
Score = 68.9 bits (167), Expect = 1e-11
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = +1
Query: 190 GPDGKGMNP-PGYYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLS 366
GP G P PG +T V VP+ A TV V Q F PVQ CP C + I T++S
Sbjct: 98 GPYPPGPYPGPGGHTATVLVPSG---AATTVTVLQGEIFEGAPVQTVCPHCQQAITTKIS 154
Query: 367 YNAGTLTWXXXXXXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
Y G + + IP ++ +DV H CP+CKA + TYKRL
Sbjct: 155 YEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYICTYKRL 207
>ref|XP_489506.3| PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha
factor homolog [Mus musculus].
Length = 129
Score = 58.2 bits (139), Expect = 2e-08
Identities = 36/111 (32%), Positives = 43/111 (38%)
Frame = +1
Query: 193 PDGKGMNPPGYYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYN 372
P +G PG Y PV N T P S PVQ CP C I+T +Y
Sbjct: 24 PSSRGPGSPGVY----PVYNQVPPGPFTGIPYMPTSI---PVQAVCPYCGNRIMTVTTYT 76
Query: 373 AGTLTWXXXXXXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
G LTW IPFC+ + DV H CP C + + RL
Sbjct: 77 PGLLTWLLCSGLFVFGCFLGCCLIPFCIRSTMDVTHSCPMCHHQIYYFHRL 127
>ref|XP_622598.3| PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha
factor homolog [Mus musculus].
Length = 129
Score = 58.2 bits (139), Expect = 2e-08
Identities = 36/111 (32%), Positives = 43/111 (38%)
Frame = +1
Query: 193 PDGKGMNPPGYYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYN 372
P +G PG Y PV N T P S PVQ CP C I+T +Y
Sbjct: 24 PSSRGPGSPGVY----PVYNQVPPGPFTGIPYMPTSI---PVQAVCPYCGNRIMTVTTYT 76
Query: 373 AGTLTWXXXXXXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
G LTW IPFC+ + DV H CP C + + RL
Sbjct: 77 PGLLTWLLCSGLFVFGCFLGCCLIPFCIRSTMDVTHSCPMCHHQIYYFHRL 127
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,700,833
Number of extensions: 1655096
Number of successful extensions: 5534
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5522
Number of HSP's successfully gapped: 4
Length of query: 578
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 471
Effective length of database: 12,403,707
Effective search space: 5842145997
Effective search space used: 5842145997
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013175
(1734 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129944.1| lipopolysaccharide-induced tumor necrosis fa... 213 6e-55
Alignment gi|NP_004853.2| lipopolysaccharide-induced tumor necrosis facto... 213 6e-55
Alignment gi|NP_001129945.1| lipopolysaccharide-induced tumor necrosis fa... 156 6e-38
Alignment gi|NP_037531.2| LITAF-like protein isoform a [Homo sapiens]. 69 1e-11
Alignment gi|NP_001185983.1| LITAF-like protein isoform a [Homo sapiens]. 69 1e-11
Alignment gi|NP_001185984.1| LITAF-like protein isoform b [Homo sapiens]. 63 1e-09
Alignment gi|NP_001185985.1| LITAF-like protein isoform c [Homo sapiens]. 62 2e-09
>ref|NP_001129944.1| lipopolysaccharide-induced tumor necrosis factor-alpha factor
isoform 1 [Homo sapiens].
Length = 161
Score = 213 bits (541), Expect = 6e-55
Identities = 100/161 (62%), Positives = 108/161 (67%)
Frame = +1
Query: 43 MSAPGAYQXXXXXXXXXXXXXXYEETLAVNSYYXXXXXXXXXXXXXLMTGPDGKGMNPPG 222
MS PG YQ YEET+AVNSYY L+TGPDGKGMNPP
Sbjct: 1 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 60
Query: 223 YYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWXXXX 402
YYTQP P+PN N I VQTVYVQ P++F DRP+QMCCPSCNKMIV+QLSYNAG LTW
Sbjct: 61 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 120
Query: 403 XXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
FIPFCVDALQDVDHYCPNC+ALLGTYKRL
Sbjct: 121 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 161
>ref|NP_004853.2| lipopolysaccharide-induced tumor necrosis factor-alpha factor
isoform 1 [Homo sapiens].
Length = 161
Score = 213 bits (541), Expect = 6e-55
Identities = 100/161 (62%), Positives = 108/161 (67%)
Frame = +1
Query: 43 MSAPGAYQXXXXXXXXXXXXXXYEETLAVNSYYXXXXXXXXXXXXXLMTGPDGKGMNPPG 222
MS PG YQ YEET+AVNSYY L+TGPDGKGMNPP
Sbjct: 1 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 60
Query: 223 YYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWXXXX 402
YYTQP P+PN N I VQTVYVQ P++F DRP+QMCCPSCNKMIV+QLSYNAG LTW
Sbjct: 61 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCG 120
Query: 403 XXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
FIPFCVDALQDVDHYCPNC+ALLGTYKRL
Sbjct: 121 SLCLLGCIAGCCFIPFCVDALQDVDHYCPNCRALLGTYKRL 161
>ref|NP_001129945.1| lipopolysaccharide-induced tumor necrosis factor-alpha factor
isoform 2 [Homo sapiens].
Length = 152
Score = 156 bits (394), Expect = 6e-38
Identities = 72/116 (62%), Positives = 79/116 (68%)
Frame = +1
Query: 43 MSAPGAYQXXXXXXXXXXXXXXYEETLAVNSYYXXXXXXXXXXXXXLMTGPDGKGMNPPG 222
MS PG YQ YEET+AVNSYY L+TGPDGKGMNPP
Sbjct: 1 MSVPGPYQAATGPSSAPSAPPSYEETVAVNSYYPTPPAPMPGPTTGLVTGPDGKGMNPPS 60
Query: 223 YYTQPVPVPNANAIAVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTW 390
YYTQP P+PN N I VQTVYVQ P++F DRP+QMCCPSCNKMIV+QLSYNAG LTW
Sbjct: 61 YYTQPAPIPNNNPITVQTVYVQHPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTW 116
>ref|NP_037531.2| LITAF-like protein isoform a [Homo sapiens].
Length = 208
Score = 68.9 bits (167), Expect = 1e-11
Identities = 41/115 (35%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Frame = +1
Query: 205 GMNPPGYYTQ-PVPVPNANAIAV-------QTVYVQQPVSFFDRPVQMCCPSCNKMIVTQ 360
G PPG YT P P P + V TV V Q F PVQ CP C + I T+
Sbjct: 93 GYYPPGPYTPGPYPGPGGHTATVLVPSGAATTVTVLQGEIFEGAPVQTVCPHCQQAITTK 152
Query: 361 LSYNAGTLTWXXXXXXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
+SY G + + IP ++ +DV H CP+CKA + TYKRL
Sbjct: 153 ISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 207
>ref|NP_001185983.1| LITAF-like protein isoform a [Homo sapiens].
Length = 208
Score = 68.9 bits (167), Expect = 1e-11
Identities = 41/115 (35%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Frame = +1
Query: 205 GMNPPGYYTQ-PVPVPNANAIAV-------QTVYVQQPVSFFDRPVQMCCPSCNKMIVTQ 360
G PPG YT P P P + V TV V Q F PVQ CP C + I T+
Sbjct: 93 GYYPPGPYTPGPYPGPGGHTATVLVPSGAATTVTVLQGEIFEGAPVQTVCPHCQQAITTK 152
Query: 361 LSYNAGTLTWXXXXXXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
+SY G + + IP ++ +DV H CP+CKA + TYKRL
Sbjct: 153 ISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 207
>ref|NP_001185984.1| LITAF-like protein isoform b [Homo sapiens].
Length = 169
Score = 62.8 bits (151), Expect = 1e-09
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Frame = +1
Query: 208 MNPPGYYTQPVPVPNANAI--------------AVQTVYVQQPVSFFDRPVQMCCPSCNK 345
+ PP Y P+P I A TV V Q F PVQ CP C +
Sbjct: 49 IGPPPYEPPGHPMPQPGFIPPHMSADGTYMPPGAATTVTVLQGEIFEGAPVQTVCPHCQQ 108
Query: 346 MIVTQLSYNAGTLTWXXXXXXXXXXXXXXXXFIPFCVDALQDVDHYCPNCKALLGTYKRL 525
I T++SY G + + IP ++ +DV H CP+CKA + TYKRL
Sbjct: 109 AITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRL 168
>ref|NP_001185985.1| LITAF-like protein isoform c [Homo sapiens].
Length = 129
Score = 62.0 bits (149), Expect = 2e-09
Identities = 32/87 (36%), Positives = 42/87 (48%)
Frame = +1
Query: 265 AVQTVYVQQPVSFFDRPVQMCCPSCNKMIVTQLSYNAGTLTWXXXXXXXXXXXXXXXXFI 444
A TV V Q F PVQ CP C + I T++SY G + + I
Sbjct: 42 AATTVTVLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLI 101
Query: 445 PFCVDALQDVDHYCPNCKALLGTYKRL 525
P ++ +DV H CP+CKA + TYKRL
Sbjct: 102 PCLINDFKDVTHTCPSCKAYIYTYKRL 128
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,379,269
Number of extensions: 1982525
Number of successful extensions: 6732
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6722
Number of HSP's successfully gapped: 7
Length of query: 578
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 470
Effective length of database: 14,737,052
Effective search space: 6926414440
Effective search space used: 6926414440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013175
(1734 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1296 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 1296 bits (654), Expect = 0.0
Identities = 668/675 (98%)
Strand = Plus / Minus
Query: 419 ggtgcgtcgcgggctgctgcttcatccctttctgtgtggacgccctgcaggacgtggacc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32321221 ggtgcgtcgcgggctgctgcttcatccctttctgtgtggacgccctgcaggacgtggacc 32321162
Query: 479 actactgtcccaactgcaaagctctcctgggcacctacaagcgtttgtaggactcgactg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32321161 actactgtcccaactgcaaagctctcctgggcacctacaagcgtttgtaggactcgactg 32321102
Query: 539 gactggagggagccacgagccacaggaacgcctggccgactgtcaccccgcccgggccct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32321101 gactggagggagccacgagccacaggaacgcctggccgactgtcaccccgcccgggccct 32321042
Query: 599 ggtgggacctccaccttggcggtgtcacctcaccaggggctccgccttcgtgtcttcttt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32321041 ggtgggacctccaccttggcggtgtcacctcaccaggggctccgccttcgtgtcttcttt 32320982
Query: 659 tggggggaaaagatcgcaaaagtaacacacctccaaacaccagaaagttgctgcttggag 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320981 tggggggaaaagatcgcaaaagtaacacacctccaaacaccagaaagttgctgcttggag 32320922
Query: 719 tcgtgcacaggacatgcaaagacattctccttgagcgctgggtcaaggctttcctgcctg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320921 tcgtgcacaggacatgcaaagacattctccttgagcgctgggtcaaggctttcctgcctg 32320862
Query: 779 cccggggcccaggtcttctcatgtagctgtgatcattgtcccgtctgaataatctcctgg 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320861 cccggggcccaggtcttctcatgtagctgtgatcattgtcccgtctgaataatctcctgg 32320802
Query: 839 ggagttgccactggctggcttttgttctggcctccgtgggcccttctctctgtggtctga 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320801 ggagttgccactggctggcttttgttctggcctccgtgggcccttctctctgtggtctga 32320742
Query: 899 aactgagacgtccccagattgccttannnnnnngaaagtgttctggccctggtttggctg 958
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 32320741 aactgagacgtccccagattgccttatttttttgaaagtgttctggccctggtttggctg 32320682
Query: 959 aaccagcctttagtgcctagcgtcacatccatctgtccccacttgcgatgacaaaaatct 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320681 aaccagcctttagtgcctagcgtcacatccatctgtccccacttgcgatgacaaaaatct 32320622
Query: 1019 tgccttatcaaccaagggcttggctctcagattctgtaaccacaggcttttaattagcac 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320621 tgccttatcaaccaagggcttggctctcagattctgtaaccacaggcttttaattagcac 32320562
Query: 1079 acaaattcactttaa 1093
|||||||||||||||
Sbjct: 32320561 acaaattcactttaa 32320547
Score = 860 bits (434), Expect = 0.0
Identities = 470/483 (97%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 1252 tagtctcttcattcacttttaagtccaaggaagggttattcacaccccccaggcacatag 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320387 tagtctcttcattcacttttaagtccaaggaagggttattcacaccccccaggcacatag 32320328
Query: 1312 ccctgaggtcataaacgcaggggataaataggaagctagatcttatcactgacctgcctt 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320327 ccctgaggtcataaacgcaggggataaataggaagctagatcttatcactgacctgcctt 32320268
Query: 1372 ctaggtaccaaatccgcagtcactttccaggaagggcttttttctcagagaggaattgtt 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320267 ctaggtaccaaatccgcagtcactttccaggaagggcttttttctcagagaggaattgtt 32320208
Query: 1432 tgtattcacagtttttgtgacctccttttggtcttaaacccctttgaacataatttcgaa 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320207 tgtattcacagtttttgtgacctccttttggtcttaaacccctttgaacataatttcgaa 32320148
Query: 1492 aggaggaattgatagaactgttttctggaacccttcagctggtgtcattctctcatctgc 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320147 aggaggaattgatagaactgttttctggaacccttcagctggtgtcattctctcatctgc 32320088
Query: 1552 caatgcgctcttgtttgttttgctgggtnnnnnnnnttgccgtaagagaaaaagtaatgg 1611
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 32320087 caatgcgctcttgtttgttttgctgggt-gggggggttgccgtaagagaaaaagtaatgg 32320029
Query: 1612 ataatttcatccactgcctttacttgggttgagtgtggttcttcaaaacctccataatgg 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32320028 ataatttcatccactgcctttacttgggttgagtgtggttcttcaaaacctccataatgg 32319969
Query: 1672 gactcaaagtggggccccttttgggttcccggaggcatgtttggaaagaccaacgacgta 1731
|||||||||||||||||||||||||||||||| || |||||||||||||| || || |||
Sbjct: 32319968 gactcaaagtggggccccttttgggttcccggtggtatgtttggaaagacaaaggaagta 32319909
Query: 1732 tgt 1734
|||
Sbjct: 32319908 tgt 32319906
Score = 448 bits (226), Expect = e-123
Identities = 226/226 (100%)
Strand = Plus / Minus
Query: 37 ggtaccatgtctgctccaggagcctaccaggcggccgctgggccttcctcggcacccacc 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32329743 ggtaccatgtctgctccaggagcctaccaggcggccgctgggccttcctcggcacccacc 32329684
Query: 97 tcgcccccgtcctatgaagagacactggccgtaaacagttactaccccacgcctccagca 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32329683 tcgcccccgtcctatgaagagacactggccgtaaacagttactaccccacgcctccagca 32329624
Query: 157 cctgtgcctgggccaaccacggggctcatgactggcccggacggaaagggcatgaatcct 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32329623 cctgtgcctgggccaaccacggggctcatgactggcccggacggaaagggcatgaatcct 32329564
Query: 217 cctgggtactatacccagccagtgcccgtccccaatgccaacgcaa 262
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32329563 cctgggtactatacccagccagtgcccgtccccaatgccaacgcaa 32329518
Score = 315 bits (159), Expect = 4e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 263 ttgccgtgcagacggtctacgtgcaacagcctgtctccttttttgaccgcccggtccaga 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32325652 ttgccgtgcagacggtctacgtgcaacagcctgtctccttttttgaccgcccggtccaga 32325593
Query: 323 tgtgctgtccctcctgcaacaagatgattgtgactcagctgtcctataatgctggcaccc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32325592 tgtgctgtccctcctgcaacaagatgattgtgactcagctgtcctataatgctggcaccc 32325533
Query: 383 tcacctggctctcctgtgggagcctctgcctgctggggt 421
|||||||||||||||||||||||||||||||||||||||
Sbjct: 32325532 tcacctggctctcctgtgggagcctctgcctgctggggt 32325494
Score = 71.9 bits (36), Expect = 1e-09
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 4 agacctcccggctcgactggcggcgcaggctgtggt 39
||||||||||||||||||||||||||||||||||||
Sbjct: 32355927 agacctcccggctcgactggcggcgcaggctgtggt 32355892
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,719,008
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 6
Length of query: 1734
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1712
Effective length of database: 2,808,408,574
Effective search space: 4807995478688
Effective search space used: 4807995478688
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)