BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013177
(2432 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015677.1| hypothetical protein LOC540626 [Bos taurus]. 652 0.0
Alignment gi|NP_001015616.1| RNA pseudouridylate synthase domain-containi... 507 e-143
Alignment gi|XP_002703537.1| PREDICTED: RNA pseudouridylate synthase doma... 505 e-143
Alignment gi|XP_002699262.1| PREDICTED: hypothetical protein [Bos taurus]. 379 e-105
Alignment gi|NP_001033124.2| hypothetical protein LOC505415 [Bos taurus]. 285 1e-76
Alignment gi|NP_001033650.1| RNA pseudouridylate synthase domain-containi... 74 6e-13
Alignment gi|XP_002690866.1| PREDICTED: RNA pseudouridylate synthase doma... 69 2e-11
Alignment gi|XP_583460.4| PREDICTED: RNA pseudouridylate synthase domain ... 69 2e-11
Alignment gi|NP_001069342.1| RNA pseudouridylate synthase domain-containi... 51 5e-06
>ref|NP_001015677.1| hypothetical protein LOC540626 [Bos taurus].
Length = 351
Score = 652 bits (1683), Expect = 0.0
Identities = 331/351 (94%), Positives = 334/351 (95%)
Frame = -2
Query: 1264 MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 1085
MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP
Sbjct: 1 MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 60
Query: 1084 ALKSWKGLIQXXXXXXXXXXXXXXXESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 905
ALKSWKGLIQ ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS
Sbjct: 61 ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 120
Query: 904 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 725
TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE
Sbjct: 121 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 180
Query: 724 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 545
SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE
Sbjct: 181 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 240
Query: 544 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 365
NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV
Sbjct: 241 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 300
Query: 364 ISYGNEYADLPEYFRRLTCEISTRGRLAGMVREGQLNGSSTAHSEIRDCST 212
ISYGN+YADLPEYF+RLTCEISTRGR AG+VREGQLNGSSTAHSEIRD ST
Sbjct: 301 ISY
Animal-Genome cDNA 20110601C-013177
Animal-Genome cDNA 20110601C-013177
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013177
(2432 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857807.1| PREDICTED: hypothetical protein XP_852714 isofo... 655 0.0
Alignment gi|XP_849050.1| PREDICTED: hypothetical protein XP_843957 isofo... 650 0.0
Alignment gi|XP_546413.2| PREDICTED: similar to RNA pseudouridylate synth... 478 e-134
Alignment gi|XP_546412.2| PREDICTED: hypothetical protein XP_546412 isofo... 418 e-116
Alignment gi|XP_538329.2| PREDICTED: similar to Protein C22orf8 [Canis fa... 286 6e-77
Alignment gi|XP_541778.2| PREDICTED: similar to RNA pseudouridylate synth... 89 1e-17
Alignment gi|XP_544620.2| PREDICTED: similar to RNA pseudouridylate synth... 69 3e-11
Alignment gi|XP_547206.2| PREDICTED: similar to RNA pseudouridylate synth... 57 8e-08
>ref|XP_857807.1| PREDICTED: hypothetical protein XP_852714 isoform 3 [Canis
familiaris].
Length = 351
Score = 655 bits (1689), Expect = 0.0
Identities = 331/351 (94%), Positives = 333/351 (94%)
Frame = -2
Query: 1264 MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 1085
MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP
Sbjct: 1 MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 60
Query: 1084 ALKSWKGLIQXXXXXXXXXXXXXXXESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 905
ALKSWKGLIQ ES+KFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS
Sbjct: 61 ALKSWKGLIQALLDAAIDFDLLEDEESRKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 120
Query: 904 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 725
TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE
Sbjct: 121 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 180
Query: 724 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 545
SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE
Sbjct: 181 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 240
Query: 544 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 365
NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV
Sbjct: 241 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 300
Query: 364 ISYGNEYADLPEYFRRLTCEISTRGRLAGMVREGQLNGSSTAHSEIRDCST 212
ISYGNEYADLPEYF+RLTCEISTRGR AGMVREGQLNGSS AHSEIRDC T
Sbjct: 301 ISYGNEYADLPEYFKRLTCEISTRGRSAGMVREGQLNGSSAAHSEIRDCRT 351
>ref|XP_849050.1| PREDICTED: hyGNDYADLPEYFKRLTCEISTRGRSAGIVREGQLNGSSTAHSEIRDHST 351
>ref|NP_001015616.1| RNA pseudouridylate synthase domain-containing protein 4 [Bos
taurus].
Length = 377
Score = 507 bits (1305), Expect = e-143
Identities = 249/299 (83%), Positives = 264/299 (88%), Gaps = 1/299 (0%)
Frame = +1
Query: 1468 MAVPSCCVSGFWVRSSGQCLGSLFTFVSKRLCSAAAA-SRPMDAQQLAERLRAQKEKQKA 1644
M P C V G WVR GQCLGSLFT SK LCSAAAA S+P+DAQ+LAERLRAQK++QK
Sbjct: 1 MVAPGCSVPGLWVRGFGQCLGSLFTLFSKPLCSAAAAASQPLDAQRLAERLRAQKQQQKT 60
Query: 1645 KGPVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGG 1824
K P PTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDK+L+VINKPYGLPVHGG
Sbjct: 61 KEPAPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKELVVINKPYGLPVHGG 120
Query: 1825 PGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ 2004
PGV+LCISDVLP+LAKILHG KA+PLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ
Sbjct: 121 PGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ 180
Query: 2005 VAKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNA 2184
V KKYWAITV VPVP AGVVDIPI+EKE QGQQ HHKMTL PSYRMD+GKMVRVR+SRNA
Sbjct: 181 VTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSRNA 240
Query: 2185 HLAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 2361
LAVTQYQV QP+TGIKHQLRVH+SFGLDCPILGDHKYSDWNRLAPQK
Sbjct: 241 QLAVTQYQVLSSSLSAALLELQPITGIKHQLRVHMSFGLDCPILGDHKYSDWNRLAPQK 299
>ref|XP_002703537.1| PREDICTED: RNA pseudouridylate synthase domain containing 4-like [Bos
taurus].
Length = 377
Score = 505 bits (1301), Expect = e-143
Identities = 248/299 (82%), Positives = 264/299 (88%), Gaps = 1/299 (0%)
Frame = +1
Query: 1468 MAVPSCCVSGFWVRSSGQCLGSLFTFVSKRLCSAAAA-SRPMDAQQLAERLRAQKEKQKA 1644
M P C V G WVR GQCLGSLFT SK LCSAAAA S+P+DAQ+LAERLRAQK++QK
Sbjct: 1 MVAPGCSVPGLWVRGFGQCLGSLFTLFSKPLCSAAAAASQPLDAQRLAERLRAQKQQQKT 60
Query: 1645 KGPVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGG 1824
K P PTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDK+L+VINKPYGLPVHGG
Sbjct: 61 KEPAPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKELVVINKPYGLPVHGG 120
Query: 1825 PGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ 2004
PGV+LCISDVLP+LAKILHG KA+PLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ
Sbjct: 121 PGVKLCISDVLPVLAKILHGPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ 180
Query: 2005 VAKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNA 2184
V KKYWAITV VPVP AGVVDIPI+EKE QGQQ HHKMTL PSYRMD+GKMVRVR+SRNA
Sbjct: 181 VTKKYWAITVRVPVPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSRNA 240
Query: 2185 HLAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 2361
LAVTQY+V QP+TGIKHQLRVH+SFGLDCPILGDHKYSDWNRLAPQK
Sbjct: 241 QLAVTQYRVLSSSLSAALLELQPITGIKHQLRVHMSFGLDCPILGDHKYSDWNRLAPQK 299
>ref|XP_002699262.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 194
Score = 379 bits (974), Expect = e-105
Identities = 187/189 (98%), Positives = 189/189 (100%)
Frame = -2
Query: 853 MEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEK 674
MEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEK
Sbjct: 1 MEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEK 60
Query: 673 RKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTT 494
RKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTT
Sbjct: 61 RKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTT 120
Query: 493 FQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYFRRL 314
FQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGN+YADLPEYF+RL
Sbjct: 121 FQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNDYADLPEYFKRL 180
Query: 313 TCEISTRGR 287
TCEISTRGR
Sbjct: 181 TCEISTRGR 189
>ref|XP_546413.2| PREDICTED: similar to RNA pseudouridylate synthase domain containing
4 [Canis familiaris].
Length = 404
Score = 478 bits (1230), Expect = e-134
Identities = 237/300 (79%), Positives = 259/300 (86%), Gaps = 2/300 (0%)
Frame = +1
Query: 1468 MAVPSCCVSGFWVRSSGQC-LGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKA 1644
MA P C G W+R SG+ +G LFT VSK CSAAAA + AQ+LAE+LRAQK++QK
Sbjct: 1 MAAPVCNAPGLWLRCSGRRRVGGLFTLVSKPFCSAAAAPGTLSAQRLAEKLRAQKQEQKT 60
Query: 1645 KGPV-PTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHG 1821
K + PT+PVQRRV ELVRFT+QLQRVHPNVLAKALSRG++HQDKDL+VINKPYGLPVHG
Sbjct: 61 KKQLAPTSPVQRRVHELVRFTQQLQRVHPNVLAKALSRGVLHQDKDLVVINKPYGLPVHG 120
Query: 1822 GPGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTR 2001
GPGVQLCISDVLPILAK+LHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQE FRTR
Sbjct: 121 GPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQEFFRTR 180
Query: 2002 QVAKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRN 2181
QVAKKYWAITV VPVPSAGVVDIPI EK VQGQQQH+KMTL P YRMDNGKMVRVR++RN
Sbjct: 181 QVAKKYWAITVRVPVPSAGVVDIPITEKAVQGQQQHYKMTLSPDYRMDNGKMVRVRSNRN 240
Query: 2182 AHLAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 2361
AH+AVTQY V QP+TGIKHQLRVHLSFGL+CPILGDHKYSDWN+LAPQK
Sbjct: 241 AHIAVTQYHVLSSTLSSALVELQPITGIKHQLRVHLSFGLNCPILGDHKYSDWNKLAPQK 300
>ref|XP_546412.2| PREDICTED: hypothetical protein XP_546412 isoform 1 [Canis
familiaris].
Length = 213
Score = 418 bits (1075), Expect = e-116
Identities = 209/214 (97%), Positives = 211/214 (98%)
Frame = -2
Query: 853 MEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEK 674
MEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEK
Sbjct: 1 MEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEK 60
Query: 673 RKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTT 494
RKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTT
Sbjct: 61 RKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTT 120
Query: 493 FQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYFRRL 314
FQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYF+RL
Sbjct: 121 FQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYFKRL 180
Query: 313 TCEISTRGRLAGMVREGQLNGSSTAHSEIRDCST 2BP_Rel49_4>>ref|NP_001033124.2| hypothetical protein LOC505415 [Bos taurus].
Length = 357
Score = 285 bits (729), Expect = 1e-76
Identities = 148/296 (50%), Positives = 205/296 (69%)
Frame = -2
Query: 1189 KKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQXXXXXXXXXXXXXXX 1010
+K RK L SL K+P+EL+LVIGTG+SAAVAP +PAL SW+ I+
Sbjct: 13 QKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPG 72
Query: 1009 ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQL 830
+ +F++ + +D +L+ VAHDLI+K+SPRT + + FF+DCL EVFDDLE +++ +
Sbjct: 73 DVAEFRRKVTKDGDLLVVAHDLIRKMSPRTGDAKPNFFQDCLMEVFDDLERHIQNP--LV 130
Query: 829 LQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHI 650
LQS+L LME G +VLTTN+DNLLE++ Q K +ESLDL D+ KVL+WA+ + VLHI
Sbjct: 131 LQSILSLMERGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGNVRYGVLHI 190
Query: 649 HGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEA 470
HG+YT+P G+VL P+GY++V ++ EVM +Q LY KSFLF+GCG T+ D FQALFL +
Sbjct: 191 HGLYTDPCGMVLDPSGYKDVTQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYS 250
Query: 469 VKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYFRRLTCEI 302
V +K DLEH+MLV + D F K + +ML GIKV+SYG+ + P Y + L +I
Sbjct: 251 VPNKVDLEHYMLVLKESEDHFFKHQADMLLHGIKVVSYGDCFDYFPGYVQDLATQI 306
>ref|NP_001033650.1| RNA pseudouridylate synthase domain-containing protein 3 [Bos
taurus].
Length = 344
Score = 73.9 bits (180), Expect = 6e-13
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 4/204 (1%)
Frame = +1
Query: 1735 LAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHKAEPLHLCH 1914
L L +V L+ +NKP GLPV G PG +L + VLP L++ L G + + +
Sbjct: 68 LVDVLRAAVVDSKGPLVTLNKPQGLPVTGKPG-ELTLLSVLPELSRSL-GLGEQEVQVVR 125
Query: 1915 RLDKETTGVMVLAWEKEVAHQVQELF----RTRQVAKKYWAITVCVPVPSAGVVDIPIIE 2082
KE +G+++L+ + A ++Q+ F R R+ Y A+T +PV S G + +
Sbjct: 126 ASGKEASGLVLLSSCSQTASRLQKFFTHSRRARKPTATYCAVTDGIPVTSEGKIQAALKL 185
Query: 2083 KEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTG 2262
+ + G + L + + K + R ++ ++V QP+T
Sbjct: 186 EHIDG------VNLVVPVQSPSRKDIMEGVKR----TLSHFRVVATGSGCALVQLQPLTV 235
Query: 2263 IKHQLRVHLSFGLDCPILGDHKYS 2334
QL+ H++ L CP+LGDH YS
Sbjct: 236 FPSQLQAHMALQL-CPVLGDHTYS 258
>ref|XP_002690866.1| PREDICTED: RNA pseudouridylate synthase domain containing 2 [Bos
taurus].
Length = 518
Score = 68.9 bits (167), Expect = 2e-11
Identities = 66/212 (31%), Positives = 106/212 (50%), Gaps = 4/212 (1%)
Frame = +1
Query: 1711 LQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHK 1890
+ R P V A+ + ++ +++D++V++KP +PVH P + + V+ IL K H+
Sbjct: 184 VHRHEPPVTAEPIR--LLAENEDVVVVDKPSSIPVH--PCGRFRHNTVIFILGK---EHQ 236
Query: 1891 AEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVCVPVPSAGVVDI 2070
+ LH HRLD+ T+GV++ A V+ ++ E R RQ+ K+Y VC V ++
Sbjct: 237 LKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEY----VCRVVGEFPTEEV 292
Query: 2071 PIIEKEVQGQQQHHKMTLCPSYRMD-NGK---MVRVRTSRNAHLAVTQYQVXXXXXXXXX 2238
E + +K+ +C R+D GK V R S N H +V +
Sbjct: 293 TCKEPIL---VVSYKVGVC---RVDPQGKPCESVFQRLSYNGHSSVVR------------ 334
Query: 2239 XXXQPVTGIKHQLRVHLSFGLDCPILGDHKYS 2334
+P+TG HQ+RVHL F L PIL D Y+
Sbjct: 335 --CRPLTGRTHQIRVHLQF-LGHPILNDPIYN 363
>ref|XP_583460.4| PREDICTED: RNA pseudouridylate synthase domain containing 2 isoform 1
[Bos taurus].
Length = 505
Score = 68.9 bits (167), Expect = 2e-11
Identities = 66/212 (31%), Positives = 106/212 (50%), Gaps = 4/212 (1%)
Frame = +1
Qu12
TCEISTRGR +GMVREGQLNGSS AHSEIRDC T
Sbjct: 181 TCEISTRGR-SGMVREGQLNGSSAAHSEIRDCRT 213
>ref|XP_538329.2| PREDICTED: similar to Protein C22orf8 [Canis familiaris].
Length = 369
Score = 286 bits (732), Expect = 6e-77
Identities = 147/300 (49%), Positives = 209/300 (69%)
Frame = -2
Query: 1201 APPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQXXXXXXXXXXX 1022
AP + + RK L SL K+P+EL+LVIGTG+SAAVAP +PAL SW+ I+
Sbjct: 21 APRSSQDRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEV 80
Query: 1021 XXXXESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDS 842
+ +F++ + +D++L+ VAHDLI+K+SPRT + + FF+DCL E+FD+LE +++
Sbjct: 81 LHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEIFDNLEQHIQNP 140
Query: 841 GKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLS 662
+LQS+L LME G +VLTTN+DNLLE++ Q K +ESLDL D+ KVL+WA+ K
Sbjct: 141 --LVLQSILSLMERGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYG 198
Query: 661 VLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQAL 482
VLHIHG+YT+P G+VL P+GY++V ++ EVM +Q LY KSFLF+GCG T+ D FQAL
Sbjct: 199 VLHIHGLYTDPCGMVLDPSGYKDVTQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQAL 258
Query: 481 FLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYFRRLTCEI 302
FL +V +K +LEH+MLV + + D F K + +ML GIKV+SYG+ + P Y + L +I
Sbjct: 259 FLYSVPNKVELEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDYFPGYVQDLATQI 318
>ref|XP_541778.2| PREDICTED: similar to RNA pseudouridylate synthase domain containing
3 [Canis familiaris].
Length = 404
Score = 89.4 bits (220), Expect = 1e-17
Identities = 85/291 (29%), Positives = 125/291 (42%), Gaps = 4/291 (1%)
Frame = +1
Query: 1474 VPSCCVSGFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAKGP 1653
VP+ + G R GQ G R S AA S QL R K GP
Sbjct: 56 VPAAEMGG--CRVLGQVWGGWRRGPGVRTASRAAGSGTEARHQLRHR-----GSSKRSGP 108
Query: 1654 VPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGPGV 1833
+ P + QL+ + L AL +V Q L+ +NKP GLPV G PG
Sbjct: 109 LGDQPFPGLL--------QLEHLSREGLVDALRAAVVDQKGPLVTLNKPPGLPVTGKPG- 159
Query: 1834 QLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELF----RTR 2001
+L + VLP L++ L G + LH+ KET+G+++L+ + A +Q+ F R R
Sbjct: 160 ELTLFSVLPELSQSL-GLRDRELHVVQASGKETSGLVLLSSCPQTASHLQKFFIYSRRAR 218
Query: 2002 QVAKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRN 2181
+ YWAIT +P S G + + + + G + L + + K + R
Sbjct: 219 RPTATYWAITDGIPATSEGNIQAALKLEHIDG------VDLVIPVKSPSRKDFQEGVKR- 271
Query: 2182 AHLAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYS 2334
++ + V QP+T QL+VH+ L CP+LGDH YS
Sbjct: 272 ---TLSHFHVVAMGSGCALVQLQPLTVFPSQLQVHMVLQL-CPVLGDHTYS 318
>ref|XP_544620.2| PREDICTED: similar to RNA pseudouridylate synthase domain containing
2 [Canis familiaris].
Length = 518
Score = 68.6 bits (166), Expect = 3e-11
Identities = 59/209 (28%), Positives = 99/209 (47%)
Frame = +1
Query: 1708 QLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGH 1887
++ R P V A+ + ++ +++D++V++KP +PVH P + + V+ IL K H
Sbjct: 183 RVHRHEPPVTAEPVR--LLAENEDVVVVDKPSSIPVH--PCGRFRHNTVIFILGK---EH 235
Query: 1888 KAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVCVPVPSAGVVD 2067
+ + LH HRLD+ T+GV++ A V+ ++ E R RQ+ K+Y VC
Sbjct: 236 QLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEY----VC---------- 281
Query: 2068 IPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXX 2247
V+G+ ++T + + K+ R T +Q
Sbjct: 282 ------RVEGEFPTEEVTCKEPILVVSYKVGVCRVDTRGKPCETVFQRLSYNGHSSVVRC 335
Query: 2248 QPVTGIKHQLRVHLSFGLDCPILGDHKYS 2334
ery: 1711 LQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHK 1890
+ R P V A+ + ++ +++D++V++KP +PVH P + + V+ IL K H+
Sbjct: 171 VHRHEPPVTAEPIR--LLAENEDVVVVDKPSSIPVH--PCGRFRHNTVIFILGK---EHQ 223
Query: 1891 AEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVCVPVPSAGVVDI 2070
+ LH HRLD+ T+GV++ A V+ ++ E R RQ+ K+Y VC V ++
Sbjct: 224 LKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEY----VCRVVGEFPTEEV 279
Query: 2071 PIIEKEVQGQQQHHKMTLCPSYRMD-NGK---MVRVRTSRNAHLAVTQYQVXXXXXXXXX 2238
E + +K+ +C R+D GK V R S N H +V +
Sbjct: 280 TCKEPIL---VVSYKVGVC---RVDPQGKPCESVFQRLSYNGHSSVVR------------ 321
Query: 2239 XXXQPVTGIKHQLRVHLSFGLDCPILGDHKYS 2334
+P+TG HQ+RVHL F L PIL D Y+
Sbjct: 322 --CRPLTGRTHQIRVHLQF-LGHPILNDPIYN 350
>ref|NP_001069342.1| RNA pseudouridylate synthase domain-containing protein 1 [Bos
taurus].
Length = 308
Score = 50.8 bits (120), Expect = 5e-06
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 7/198 (3%)
Frame = +1
Query: 1759 IVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHK--AEP-----LHLCHR 1917
+V++ D LV+NK + + + + L + ++ H A+P CH+
Sbjct: 11 VVYRSHDFLVVNKHWDVRIDSKAW-----RETLTLQKQLRHRFPELADPDTYYGFRFCHQ 65
Query: 1918 LDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVCVPVPSAGVVDIPIIEKEVQG 2097
LD T+G + +A K A F+ R+V K Y A+ S + I + +G
Sbjct: 66 LDFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHVQESRMTISYAIGKNSTEG 125
Query: 2098 QQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTGIKHQL 2277
+ H M + + +N K L V ++ + QP+TG HQL
Sbjct: 126 RT--HTMCIEGTQGCENPK------PSLTELVVLEHGL-YAGDPVSKVLLQPLTGRTHQL 176
Query: 2278 RVHLSFGLDCPILGDHKY 2331
RVH S L PI+GD Y
Sbjct: 177 RVHCS-ALGHPIVGDLTY 193
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 97,066,828
Number of extensions: 2792366
Number of successful extensions: 9141
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 9106
Number of HSP's successfully gapped: 9
Length of query: 810
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 700
Effective length of database: 14,041,694
Effective search space: 9829185800
Effective search space used: 9829185800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
+P+TG HQ+RVHL F L PIL D Y+
Sbjct: 336 RPLTGRTHQIRVHLQF-LGHPILNDPIYN 363
>ref|XP_547206.2| PREDICTED: similar to RNA pseudouridylate synthase domain containing
1 [Canis familiaris].
Length = 302
Score = 57.0 bits (136), Expect = 8e-08
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 8/199 (4%)
Frame = +1
Query: 1759 IVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGH---KAEP-----LHLCH 1914
+V+Q +D LV+NK + L + + P L K L H A+P CH
Sbjct: 11 VVYQSRDFLVVNKHWDLRIDSRMWRET------PTLQKQLRHHFPELADPDTYYGFRFCH 64
Query: 1915 RLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVCVPVPSAGVVDIPIIEKEVQ 2094
+LD T+G + +A K A + F+ R+V K Y A+ S ++ I +
Sbjct: 65 QLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESRMTINYAIGRNSTE 124
Query: 2095 GQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTGIKHQ 2274
G+ H M + + +N K L V ++ + QP+TG HQ
Sbjct: 125 GRA--HTMCIEGTEGCENPK------PSLTELVVLEHGL-YAGDPVSKVLLQPLTGRTHQ 175
Query: 2275 LRVHLSFGLDCPILGDHKY 2331
LRVH S L P++GD Y
Sbjct: 176 LRVHCS-ALSHPVVGDLTY 193
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 101,375,260
Number of extensions: 2883840
Number of successful extensions: 9939
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9911
Number of HSP's successfully gapped: 8
Length of query: 810
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 699
Effective length of database: 15,174,208
Effective search space: 10606771392
Effective search space used: 10606771392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013177
(2432 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130113.2| PREDICTED: protein FAM118B-like [Sus scrofa]. 662 0.0
Alignment gi|XP_003130109.1| PREDICTED: RNA pseudouridylate synthase doma... 575 e-164
Alignment gi|XP_003130110.1| PREDICTED: RNA pseudouridylate synthase doma... 491 e-139
Alignment gi|XP_003126004.2| PREDICTED: protein FAM118A-like [Sus scrofa]. 217 2e-56
Alignment gi|XP_001928432.1| PREDICTED: RNA pseudouridylate synthase doma... 79 2e-14
Alignment gi|XP_003132405.1| PREDICTED: RNA pseudouridylate synthase doma... 57 5e-08
Alignment gi|XP_003124746.1| PREDICTED: RNA pseudouridylate synthase doma... 50 4e-06
>ref|XP_003130113.2| PREDICTED: protein FAM118B-like [Sus scrofa].
Length = 351
Score = 662 bits (1708), Expect = 0.0
Identities = 335/351 (95%), Positives = 336/351 (95%)
Frame = -2
Query: 1264 MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 1085
MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP
Sbjct: 1 MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 60
Query: 1084 ALKSWKGLIQXXXXXXXXXXXXXXXESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 905
ALKSWKGLIQ ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS
Sbjct: 61 ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 120
Query: 904 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 725
TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE
Sbjct: 121 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 180
Query: 724 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 545
SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE
Sbjct: 181 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 240
Query: 544 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 365
NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV
Sbjct: 241 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 300
Query: 364 ISYGNEYADLPEYFRRLTCEISTRGRLAGMVREGQLNGSSTAHSEIRDCST 212
ISYGNEYADLPEYFRRLTCEISTRGRLAGMVREGQLNGSSTAHS+IRDCST
Sbjct: 301 ISYGNEYADLPEYFRRLTCEISTRGRLAGMVREGQLNGSSTAHSDIRDCST 351
>ref|XP_003130109.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Sus scrofa].
Length = 376
Score = 575 bits (1481), Expect = e-164
Identities = 284/298 (95%), Positives = 284/298 (95%)
Frame = +1
Query: 1468 MAVPSCCVSGFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAK 1647
MAVPSCCV GFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAK
Sbjct: 1 MAVPSCCVPGFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAK 60
Query: 1648 GPVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGP 1827
GPVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGP
Sbjct: 61 GPVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGP 120
Query: 1828 GVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQV 2007
GVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQV
Sbjct: 121 GVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQV 180
Query: 2008 AKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAH 2187
AKKYWAITV VPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAH
Sbjct: 181 AKKYWAITVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAH 240
Query: 2188 LAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 2361
LAVTQYQV QPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK
Sbjct: 241 LAVTQYQVLSSTLSSALLELQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 298
>ref|XP_003130110.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Sus scrofa].
Length = 345
Score = 491 bits (1265), Expect = e-139
Identities = 252/298 (84%), Positives = 253/298 (84%)
Frame = +1
Query: 1468 MAVPSCCVSGFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAK 1647
MAVPSCCV GFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAK
Sbjct: 1 MAVPSCCVPGFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAK 60
Query: 1648 GPVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGP 1827
GPVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGP
Sbjct: 61 GPVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGP 120
Query: 1828 GVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQV 2007
GVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQV
Sbjct: 121 GVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQV 180
Query: 2008 AKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAH 2187
AKKYWAITV VPVPSAGVVDIPIIEKEVQ
Sbjct: 181 AKKYWAITVRVPVPSAGVVDIPIIEKEVQ------------------------------- 209
Query: 2188 LAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 2361
+AVTQYQV QPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK
Sbjct: 210 VAVTQYQVLSSTLSSALLELQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 267
>ref|XP_003126004.2| PREDICTED: protein FAM118A-like [Sus scrofa].
Length = 382
Score = 217 bits (553), Expect = 2e-56
Identities = 133/295 (45%), Positives = 184/295 (62%)
Frame = -2
Query: 1186 KPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQXXXXXXXXXXXXXXXE 1007
K RK L SL K+P+EL+LV+GTG+SAAVAP +PAL SW+ I+
Sbjct: 14 KSRKFLKSLIRKQPQELLLVMGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLXXXX 73
Query: 1006 SKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQLL 827
+ + +D++L+ VAHDLI+K+SPRT + + FF+DCL EVFDDLE +++ +L
Sbjct: 74 XXXXXRKVTKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDDLERHIQNP--LVL 131
Query: 826 QSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHIH 647
QS+L LME GA+VLTTN+DNLLE++ Q K +ESLDL D+ KV + ++
Sbjct: 132 QSILSLMERGAMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVRTAGPALPRPALPP-- 189
Query: 646 GVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEAV 467
GV+ P G P + VL+N LY KSFLF+GCG T+ D FQALFL +V
Sbjct: 190 GVW--PRG----PGSGKEVLQN---------LYRTKSFLFVGCGETLRDQIFQALFLYSV 234
Query: 466 KHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYFRRLTCEI 302
++ DLEH+M+V + D F K + +ML GIKV+SYG+ + P Y + L +I
Sbjct: 235 PNRVDLEHYMVVLKESEDHFFKHQADMLLHGIKVVSYGDCFDYFPAYVQDLASQI 289
>ref|XP_001928432.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 3
isoform 1 [Sus scrofa].
Length = 352
Score = 78.6 bits (192), Expect = 2e-14
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 4/204 (1%)
Frame = +1
Query: 1735 LAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHKAEPLHLCH 1914
L L +V Q L+ +NKP GLPV G PG +L + VLP L++ L G L +
Sbjct: 76 LVDVLREAVVDQKGPLVTLNKPQGLPVTGKPG-ELTLVSVLPELSQCL-GLGERELQVVR 133
Query: 1915 RLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKK----YWAITVCVPVPSAGVVDIPIIE 2082
KET+G+++L+ + A ++Q+ F Q A+K Y A+T +P S G + +
Sbjct: 134 ASGKETSGLVLLSSCPQTASRLQKFFTHSQRARKPTATYCAVTDGIPAASEGKIQAALKM 193
Query: 2083 KEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTG 2262
+ G + + R D K V+ ++ ++V QP+T
Sbjct: 194 EHTDGASL--VVPVKSPSRKDFLKGVK--------WTLSHFRVLASGSGCALVQLQPLTA 243
Query: 2263 IKHQLRVHLSFGLDCPILGDHKYS 2334
QL+VH+ L CP+LGDHKYS
Sbjct: 244 FPSQLQVHMVLQL-CPVLGDHKYS 266
>ref|XP_003132405.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 3
isoform 2 [Sus scrofa].
Length = 337
Score = 57.0 bits (136), Expect = 5e-08
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Frame = +1
Query: 1819 GGPGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRT 1998
G PG +L + VLP L++ L G L + KET+G+++L+ + A ++Q+ F
Sbjct: 89 GKPG-ELTLVSVLPELSQCL-GLGERELQVVRASGKETSGLVLLSSCPQTASRLQKFFTH 146
Query: 1999 RQVAKK----YWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRV 2166
Q A+K Y A+T +P S G + + + G + PS R D K V+
Sbjct: 147 SQRARKPTATYCAVTDGIPAASEGKIQAALKMEHTDGASLVVPVK-SPS-RKDFLKGVK- 203
Query: 2167 RTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYS 2334
++ ++V QP+T QL+VH+ L CP+LGDHKYS
Sbjct: 204 -------WTLSHFRVLASGSGCALVQLQPLTAFPSQLQVHMVLQL-CPVLGDHKYS 251
>ref|XP_003124746.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
1-like [Sus scrofa].
Length = 312
Score = 50.4 bits (119), Expect = 4e-06
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 7/198 (3%)
Frame = +1
Query: 1759 IVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHK--AEP-----LHLCHR 1917
+V++ D LV+NK + + + + L + ++ H A+P CH+
Sbjct: 11 VVYRSHDFLVVNKHWDVRIDSKAW-----RETLTLQKQLRHRFPELADPDTCYGFRFCHQ 65
Query: 1918 LDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVCVPVPSAGVVDIPIIEKEVQG 2097
LD T+G + +A K A F+ R+V K Y A+ S + I + +G
Sbjct: 66 LDFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHIQESRVTISYAIGKNSTEG 125
Query: 2098 QQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTGIKHQL 2277
+ H M + + +N K L V ++ + QP+TG HQL
Sbjct: 126 RT--HTMCIEGTQGCENPK------PSLTELVVLEHGL-YGGDPVSKVLLQPLTGRTHQL 176
Query: 2278 RVHLSFGLDCPILGDHKY 2331
RVH S L PI+GD Y
Sbjct: 177 RVHCS-ALGHPIVGDLTY 193
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 62,643,077
Number of extensions: 1801846
Number of successful extensions: 5918
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5902
Number of HSP's successfully gapped: 8
Length of query: 810
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 703
Effective length of database: 8,679,953
Effective search space: 6102006959
Effective search space used: 6102006959
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013177
(2432 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_919233.1| hypothetical protein LOC109229 isoform 1 [Mus m... 642 0.0
Alignment gi|NP_082316.1| RNA pseudouridylate synthase domain-containing ... 460 e-129
Alignment gi|NP_780620.1| hypothetical protein LOC109229 isoform 2 [Mus m... 319 6e-87
Alignment gi|NP_598511.1| hypothetical protein LOC73225 isoform a [Mus mu... 276 5e-74
Alignment gi|NP_796041.2| hypothetical protein LOC73225 isoform b [Mus mu... 197 2e-50
Alignment gi|NP_001028376.1| RNA pseudouridylate synthase domain-containi... 83 1e-15
Alignment gi|NP_775626.1| RNA pseudouridylate synthase domain-containing ... 67 6e-11
Alignment gi|NP_082285.1| RNA pseudouridylate synthase domain-containing ... 54 6e-07
>ref|NP_919233.1| hypothetical protein LOC109229 isoform 1 [Mus musculus].
Length = 351
Score = 642 bits (1655), Expect = 0.0
Identities = 324/351 (92%), Positives = 328/351 (93%)
Frame = -2
Query: 1264 MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 1085
MASTGSQASD +KI GFF+DG PPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP
Sbjct: 1 MASTGSQASDKNKIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 60
Query: 1084 ALKSWKGLIQXXXXXXXXXXXXXXXESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 905
ALKSWKGLIQ ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS
Sbjct: 61 ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 120
Query: 904 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 725
TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE
Sbjct: 121 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 180
Query: 724 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 545
SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE
Sbjct: 181 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 240
Query: 544 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 365
NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV
Sbjct: 241 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 300
Query: 364 ISYGNEYADLPEYFRRLTCEISTRGRLAGMVREGQLNGSSTAHSEIRDCST 212
ISYGN+YADLPEYF+RLTCEISTRGR AGM REGQLNGSS AH EIR CST
Sbjct: 301 ISYGNDYADLPEYFKRLTCEISTRGRSAGMAREGQLNGSSAAHGEIRGCST 351
>ref|NP_082316.1| RNA pseudouridylate synthase domain-containing protein 4 [Mus
musculus].
Length = 377
Score = 460 bits (1184), Expect = e-129
Identities = 232/299 (77%), Positives = 253/299 (84%), Gaps = 1/299 (0%)
Frame = +1
Query: 1468 MAVPSCCVSGFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAK 1647
MA P G + S G LFT S CS+A +SRP++AQ+LAE+LRAQK++QKAK
Sbjct: 1 MAAPCLRTPGVQLLSMSSRPGRLFTPGSWSFCSSATSSRPLNAQRLAEKLRAQKQEQKAK 60
Query: 1648 GP-VPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGG 1824
VPTNPVQRRV+ELVRFT+QLQRVHPNVLAK LSR I+HQD DL+VINKPYGLPVHGG
Sbjct: 61 EVRVPTNPVQRRVQELVRFTQQLQRVHPNVLAKELSRRILHQDNDLVVINKPYGLPVHGG 120
Query: 1825 PGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ 2004
PGVQLCISDVLPILAK+LHGHKAEPLHLCHRLDKETTGVMVLAWEK++AHQVQELFRTRQ
Sbjct: 121 PGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQ 180
Query: 2005 VAKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNA 2184
V KKYWAITV VP+PSAGVVDIPI EKEVQG QQHHKMTL PSYR+DNGKMV+VR SR+A
Sbjct: 181 VEKKYWAITVRVPLPSAGVVDIPIKEKEVQGPQQHHKMTLSPSYRLDNGKMVKVRASRDA 240
Query: 2185 HLAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 2361
H+AVTQYQV QPVTGIKHQLRVHLSFGLDCPILGDHKYSDW RLAPQK
Sbjct: 241 HVAVTQYQVLSSASSSALVELQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWTRLAPQK 299
>ref|NP_780620.1| hypothetical protein LOC109229 isoform 2 [Mus musculus].
Length = 275
Score = 319 bits (818), Expect = 6e-87
Identities = 155/162 (95%), Positives = 157/162 (96%)
Frame = -2
Query: 697 VLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGC 518
VLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGC
Sbjct: 114 VLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGC 173
Query: 517 GWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYAD 338
GWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGN+YAD
Sbjct: 174 GWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNDYAD 233
Query: 337 LPEYFRRLTCEISTRGRLAGMVREGQLNGSSTAHSEIRDCST 212
LPEYF+RLTCEISTRGR AGM REGQLNGSS AH EIR CST
Sbjct: 234 LPEYFKRLTCEISTRGRSAGMAREGQLNGSSAAHGEIRGCST 275
Score = 179 bits (454), Expect = 9e-45
Identities = 93/113 (82%), Positives = 95/113 (84%)
Frame = -2
Query: 1264 MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 1085
MASTGSQASD +KI GFF+DG PPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP
Sbjct: 1 MASTGSQASDKNKIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 60
Query: 1084 ALKSWKGLIQXXXXXXXXXXXXXXXESKKFQKCLHEDKNLVHVAHDLIQKLSP 926
ALKSWKGLIQ ESKKFQKCLHEDKNLVHVAHDLIQKLSP
Sbjct: 61 ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSP 113
>ref|NP_598511.1| hypothetical protein LOC73225 isoform a [Mus musculus].
Length = 357
Score = 276 bits (706), Expect = 5e-74
Identities = 143/296 (48%), Positives = 205/296 (69%)
Frame = -2
Query: 1189 KKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQXXXXXXXXXXXXXXX 1010
+K RK L SL K+P++L+LVIGTG+SAAVAP + AL SW+ I+
Sbjct: 13 QKCRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLHPG 72
Query: 1009 ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQL 830
+ +F++ + +D++L+ VAHDLI+K+SPRT + + FF+DCL EVFD LE +++ +
Sbjct: 73 DVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNP--VV 130
Query: 829 LQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHI 650
L+S+L LM+ G +VLTTN+DNLLE++ Q K +ESLDL D+ KVL+WA+ K VLHI
Sbjct: 131 LRSILSLMDRGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHI 190
Query: 649 HGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEA 470
HG+YT+P G+VL P+GY++V ++ EVM +Q LY KSFLF+GCG T+ D FQALFL +
Sbjct: 191 HGLYTDPCGMVLDPSGYKDVTQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYS 250
Query: 469 VKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYFRRLTCEI 302
V +K DLEH+M+V + + D F K + +ML GIKV+SYG+ + P Y + L +I
Sbjct: 251 VPNKVDLEHYMVVLKENEDHFFKHQADMLLHGIKVVSYGDCFDLFPGYVQDLATQI 306
>ref|NP_796041.2| hypothetical protein LOC73225 isoform b [Mus musculus].
Length = 250
Score = 197 bits (502), Expect = 2e-50
Identities = 100/207 (48%), Positives = 146/207 (70%)
Frame = -2
Query: 1189 KKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQXXXXXXXXXXXXXXX 1010
+K RK L SL K+P++L+LVIGTG+SAAVAP + AL SW+ I+
Sbjct: 13 QKCRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLHPG 72
Query: 1009 ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQL 830
+ +F++ + +D++L+ VAHDLI+K+SPRT + + FF+DCL EVFD LE +++ +
Sbjct: 73 DVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNP--VV 130
Query: 829 LQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHI 650
L+S+L LM+ G +VLTTN+DNLLE++ Q K +ESLDL D+ KVL+WA+ K VLHI
Sbjct: 131 LRSILSLMDRGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHI 190
Query: 649 HGVYTNPSGIVLHPAGYQNVLRNTEVM 569
HG+YT+P G+VL P+GY++V ++ EVM
Sbjct: 191 HGLYTDPCGMVLDPSGYKDVTQDPEVM 217
>ref|NP_001028376.1| RNA pseudouridylate synthase domain-containing protein 3 [Mus
musculus].
Length = 344
Score = 82.8 bits (203), Expect = 1e-15
Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 4/204 (1%)
Frame = +1
Query: 1735 LAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHKAEPLHLCH 1914
LA L +V Q L+ +NKP GLPV G PG +L + VLP L++ L G + + L +
Sbjct: 68 LAHVLRAAVVDQKGPLVTLNKPQGLPVTGRPG-ELTLLSVLPQLSQAL-GLEHQELQVVR 125
Query: 1915 RLDKETTGVMVLAWEKEVAHQVQELF----RTRQVAKKYWAITVCVPVPSAGVVDIPIIE 2082
KE +G+++L+ + A ++Q+ F R ++ Y A+T +P PS G V +P+
Sbjct: 126 APGKEASGLVLLSSCPQTASRLQKFFIHSRRAQRPTATYCAVTDGIPEPSEGTVCMPL-- 183
Query: 2083 KEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTG 2262
+Q + + L + K ++ R ++++ V QP+T
Sbjct: 184 ----KMEQMNDVDLAVPVMSPSRKDIQEGVKR----TLSRFHVMATGRGCALVQLQPLTV 235
Query: 2263 IKHQLRVHLSFGLDCPILGDHKYS 2334
+QL+VH++ L CPILGDH Y+
Sbjct: 236 FPNQLQVHMALQL-CPILGDHTYA 258
>ref|NP_775626.1| RNA pseudouridylate synthase domain-containing protein 2 [Mus
musculus].
Length = 553
Score = 67.0 bits (162), Expect = 6e-11
Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 5/213 (2%)
Frame = +1
Query: 1711 LQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHK 1890
+ R P V A+ + ++ ++ D++VI+KP +PVH P + + V+ IL K H+
Sbjct: 224 VHRHEPPVTAEPIH--LLAENNDVVVIDKPSSIPVH--PCGRFRHNTVIFILGK---EHQ 276
Query: 1891 AEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVCVPVPSAGVV-D 2067
+ LH HRLD+ T+GV++ A V+ ++ E R RQ+ K+Y V P V+
Sbjct: 277 LKELHPLHRLDRLTSGVLMFAKTAAVSEKIHEQVRDRQLEKEY-VCRVAGEFPDKEVICK 335
Query: 2068 IPIIEKEVQGQQQHHKMTLCPSYRMD-NGK---MVRVRTSRNAHLAVTQYQVXXXXXXXX 2235
PI+ +K+ +C R+D GK V R S N +V Q
Sbjct: 336 EPILVVS-------YKVGVC---RVDPRGKPCETVFQRLSYNGRSSVVQ----------- 374
Query: 2236 XXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYS 2334
+P+TG HQ+RVHL F L PIL D Y+
Sbjct: 375 ---CRPLTGRTHQIRVHLQF-LGHPILNDPIYN 403
>ref|NP_082285.1| RNA pseudouridylate synthase domain-containing protein 1 [Mus
musculus].
Length = 306
Score = 53.9 bits (128), Expect = 6e-07
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 7/198 (3%)
Frame = +1
Query: 1759 IVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHK--AEP-----LHLCHR 1917
IV+Q D LV+NK + L + + L + ++ H A+P CH+
Sbjct: 11 IVYQSSDFLVVNKHWDLRIDSKTW-----RETLTLQKQLRHHFPELADPDTCYGFRFCHQ 65
Query: 1918 LDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVCVPVPSAGVVDIPIIEKEVQG 2097
LD T+G + +A K A + F+ R+V K Y A+ S ++ I +G
Sbjct: 66 LDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNSTEG 125
Query: 2098 QQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTGIKHQL 2277
+ H M + ++ +N K L V ++ + +P+TG HQL
Sbjct: 126 RT--HTMCIEGTHGCENPK------PSLTELLVLEHGL-YAGDPVSKVLLKPLTGRTHQL 176
Query: 2278 RVHLSFGLDCPILGDHKY 2331
RVH S L PI+GD Y
Sbjct: 177 RVHCS-ALGHPIVGDLTY 193
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 83,958,408
Number of extensions: 2340338
Number of successful extensions: 7358
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7319
Number of HSP's successfully gapped: 9
Length of query: 810
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 700
Effective length of database: 12,313,599
Effective search space: 8619519300
Effective search space used: 8619519300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013177
(2432 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078832.1| hypothetical protein LOC79607 [Homo sapiens]. 644 0.0
Alignment gi|NP_116184.2| RNA pseudouridylate synthase domain-containing ... 476 e-134
Alignment gi|NP_001138299.1| RNA pseudouridylate synthase domain-containi... 406 e-113
Alignment gi|NP_060381.2| hypothetical protein LOC55007 [Homo sapiens]. 290 6e-78
Alignment gi|NP_001098065.1| hypothetical protein LOC55007 [Homo sapiens]. 290 6e-78
Alignment gi|NP_775930.2| RNA pseudouridylate synthase domain-containing ... 74 5e-13
Alignment gi|NP_689473.1| RNA pseudouridylate synthase domain-containing ... 68 3e-11
Alignment gi|NP_001136019.1| RNA pseudouridylate synthase domain-containi... 53 1e-06
>ref|NP_078832.1| hypothetical protein LOC79607 [Homo sapiens].
Length = 351
Score = 644 bits (1660), Expect = 0.0
Identities = 325/351 (92%), Positives = 330/351 (94%)
Frame = -2
Query: 1264 MASTGSQASDIDKILGFFSDGAPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 1085
MASTGSQASDID+I GFF+DG PPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP
Sbjct: 1 MASTGSQASDIDEIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 60
Query: 1084 ALKSWKGLIQXXXXXXXXXXXXXXXESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 905
ALKSWKGLIQ ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS
Sbjct: 61 ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 120
Query: 904 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 725
TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE
Sbjct: 121 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 180
Query: 724 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 545
SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE
Sbjct: 181 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 240
Query: 544 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 365
NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV
Sbjct: 241 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 300
Query: 364 ISYGNEYADLPEYFRRLTCEISTRGRLAGMVREGQLNGSSTAHSEIRDCST 212
ISYG++YADLPEYF+RLTCEISTRG AGMVREGQLNGSS AHSEIR CST
Sbjct: 301 ISYGDDYADLPEYFKRLTCEISTRGTSAGMVREGQLNGSSAAHSEIRGCST 351
>ref|NP_116184.2| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Homo sapiens].
Length = 377
Score = 476 bits (1224), Expect = e-134
Identities = 234/299 (78%), Positives = 259/299 (86%), Gaps = 1/299 (0%)
Frame = +1
Query: 1468 MAVPSCCVSGFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAK 1647
MA P SG W+R +GQ GSLFT VSK C+AAAAS ++AQ+LAE+LRAQK +Q K
Sbjct: 1 MAAPRWSASGPWIRGNGQGCGSLFTLVSKPFCAAAAASTAINAQRLAEKLRAQKREQDTK 60
Query: 1648 G-PVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGG 1824
PV TN VQRRV+E+VRFT QLQRVHPNVLAKAL+RGI+HQDK+L+VINKPYGLPVHGG
Sbjct: 61 KEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPVHGG 120
Query: 1825 PGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ 2004
PGVQLCI+DVLPILAK+LHGHKAEPLHLCHRLDKETTGVMVLAW+K++AHQVQELFRTRQ
Sbjct: 121 PGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQ 180
Query: 2005 VAKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNA 2184
V KKYWAITV VP+PSAGVVDIPI+EKE QGQQQHHKMTL PSYRMD+GKMV+VR SRNA
Sbjct: 181 VVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA 240
Query: 2185 HLAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 2361
+AVTQYQV QP+TGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK
Sbjct: 241 QVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 299
>ref|NP_001138299.1| RNA pseudouridylate synthase domain-containing protein 4 isoform b
[Homo sapiens].
Length = 346
Score = 406 bits (1043), Expect = e-113
Identities = 208/299 (69%), Positives = 231/299 (77%), Gaps = 1/299 (0%)
Frame = +1
Query: 1468 MAVPSCCVSGFWVRSSGQCLGSLFTFVSKRLCSAAAASRPMDAQQLAERLRAQKEKQKAK 1647
MA P SG W+R +GQ GSLFT VSK C+AAAAS ++AQ+LAE+LRAQK +Q K
Sbjct: 1 MAAPRWSASGPWIRGNGQGCGSLFTLVSKPFCAAAAASTAINAQRLAEKLRAQKREQDTK 60
Query: 1648 G-PVPTNPVQRRVRELVRFTEQLQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGG 1824
PV TN VQRRV+E+VRFT QLQRVHPNVLAKAL+RGI+HQDK+L+VINKPYGLPVHGG
Sbjct: 61 KEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPVHGG 120
Query: 1825 PGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ 2004
PGVQLCI+DVLPILAK+LHGHKAEPLHLCHRLDKETTGVMVLAW+K++AHQVQELFRTRQ
Sbjct: 121 PGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQ 180
Query: 2005 VAKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNA 2184
V KKYWAITV VP+PSAGVVDIPI+EKE Q
Sbjct: 181 VVKKYWAITVHVPMPSAGVVDIPIVEKEAQ------------------------------ 210
Query: 2185 HLAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 2361
+AVTQYQV QP+TGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK
Sbjct: 211 -VAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQK 268
>ref|NP_060381.2| hypothetical protein LOC55007 [Homo sapiens].
Length = 357
Score = 290 bits (741), Expect = 6e-78
Identities = 150/296 (50%), Positives = 206/296 (69%)
Frame = -2
Query: 1189 KKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQXXXXXXXXXXXXXXX 1010
+K RK L SL K+P+EL+LVIGTG+SAAVAP +PAL SW+ I+
Sbjct: 13 QKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPG 72
Query: 1009 ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQL 830
+ +F++ + +D++L+ VAHDLI+K+SPRT + + +FF+DCL EVFDDLE + +
Sbjct: 73 DVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDDLEQHIRSP--VV 130
Query: 829 LQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHI 650
LQS+L LM+ GA+VLTTN+DNLLE + Q K +ESLDL D+ KVLEWA+ K VLHI
Sbjct: 131 LQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWARGHMKYGVLHI 190
Query: 649 HGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEA 470
HG+YT+P G+VL P+GY++V ++ EVM +Q LY KSFLF+GCG T+ D FQALFL +
Sbjct: 191 HGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYS 250
Query: 469 VKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYFRRLTCEI 302
V +K DLEH+MLV + + D F K + +ML GIKV+SYG+ + P Y + L +I
Sbjct: 251 VPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQDLATQI 306
>ref|NP_001098065.1| hypothetical protein LOC55007 [Homo sapiens].
Length = 357
Score = 290 bits (741), Expect = 6e-78
Identities = 150/296 (50%), Positives = 206/296 (69%)
Frame = -2
Query: 1189 KKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQXXXXXXXXXXXXXXX 1010
+K RK L SL K+P+EL+LVIGTG+SAAVAP +PAL SW+ I+
Sbjct: 13 QKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPG 72
Query: 1009 ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQL 830
+ +F++ + +D++L+ VAHDLI+K+SPRT + + +FF+DCL EVFDDLE + +
Sbjct: 73 DVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDDLEQHIRSP--VV 130
Query: 829 LQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHI 650
LQS+L LM+ GA+VLTTN+DNLLE + Q K +ESLDL D+ KVLEWA+ K VLHI
Sbjct: 131 LQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWARGHMKYGVLHI 190
Query: 649 HGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEA 470
HG+YT+P G+VL P+GY++V ++ EVM +Q LY KSFLF+GCG T+ D FQALFL +
Sbjct: 191 HGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYS 250
Query: 469 VKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGNEYADLPEYFRRLTCEI 302
V +K DLEH+MLV + + D F K + +ML GIKV+SYG+ + P Y + L +I
Sbjct: 251 VPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQDLATQI 306
>ref|NP_775930.2| RNA pseudouridylate synthase domain-containing protein 3 isoform 1
[Homo sapiens].
Length = 351
Score = 74.3 bits (181), Expect = 5e-13
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 4/204 (1%)
Frame = +1
Query: 1735 LAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHKAEPLHLCH 1914
L AL +V + L+ +NKP GLPV G PG +L + VLP L++ L G + + L +
Sbjct: 75 LVDALRAAVVDRKGPLVTLNKPQGLPVTGKPG-ELTLFSVLPELSQSL-GLREQELQVVR 132
Query: 1915 RLDKETTGVMVLAWEKEVAHQVQELF----RTRQVAKKYWAITVCVPVPSAGVVDIPIIE 2082
KE++G+++L+ + A ++Q+ F R ++ Y A+T +P S G + +
Sbjct: 133 ASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTATYCAVTDGIPAASEGKIQAALKL 192
Query: 2083 KEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTG 2262
+ + G + L + + K + + ++ ++V QP+T
Sbjct: 193 EHIDG------VNLTVPVKAPSRKDILEGVKK----TLSHFRVVATGSGCALVQLQPLTV 242
Query: 2263 IKHQLRVHLSFGLDCPILGDHKYS 2334
QL+VH+ L CP+LGDH YS
Sbjct: 243 FSSQLQVHMVLQL-CPVLGDHMYS 265
>ref|NP_689473.1| RNA pseudouridylate synthase domain-containing protein 2 [Homo
sapiens].
Length = 545
Score = 68.2 bits (165), Expect = 3e-11
Identities = 59/208 (28%), Positives = 98/208 (47%)
Frame = +1
Query: 1711 LQRVHPNVLAKALSRGIVHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAKILHGHK 1890
+ R P V A+ + ++ +++D++V++KP +PVH P + + V+ IL K H+
Sbjct: 211 VHRHEPPVTAEPIR--LLAENEDVVVVDKPSSIPVH--PCGRFRHNTVIFILGK---EHQ 263
Query: 1891 AEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVCVPVPSAGVVDI 2070
+ LH HRLD+ T+GV++ A V+ ++ E R RQ+ K+Y VC
Sbjct: 264 LKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEY----VC----------- 308
Query: 2071 PIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVXXXXXXXXXXXXQ 2250
V+G+ ++T + + K+ R T +Q +
Sbjct: 309 -----RVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVVRCR 363
Query: 2251 PVTGIKHQLRVHLSFGLDCPILGDHKYS 2334
P+TG HQ+RVHL F L PIL D Y+
Sbjct: 364 PLTGRTHQIRVHLQF-LGHPILNDPIYN 390
>ref|NP_001136019.1| RNA pseudouridylate synthase domain-containing protein 3 isoform 2
[Homo sapiens].
Length = 336
Score = 53.1 bits (126), Expect = 1e-06
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 4/176 (2%)
Frame = +1
Query: 1819 GGPGVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELF-- 1992
G PG +L + VLP L++ L G + + L + KE++G+++L+ + A ++Q+ F
Sbjct: 88 GKPG-ELTLFSVLPELSQSL-GLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTH 145
Query: 1993 --RTRQVAKKYWAITVCVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRV 2166
R ++ Y A+T +P S G + + + + G + L + + K +
Sbjct: 146 ARRAQRPTATYCAVTDGIPAASEGKIQAALKLEHIDG------VNLTVPVKAPSRKDILE 199
Query: 2167 RTSRNAHLAVTQYQVXXXXXXXXXXXXQPVTGIKHQLRVHLSFGLDCPILGDHKYS 2334
+ ++ ++V QP+T QL+VH+ L CP+LGDH YS
Sbjct: 200 GVKKT----LSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQL-CPVLGDHMYS 250
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 99,374,782
Number of extensions: 2821237
Number of successful extensions: 9110
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9074
Number of HSP's successfully gapped: 9
Length of query: 810
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 699
Effective length of database: 14,638,160
Effective search space: 10232073840
Effective search space used: 10232073840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013177
(2432 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 755 0.0
Sscrofa_Chr07 337 2e-89
>Sscrofa_Chr09
|| Length = 153670197
Score = 755 bits (381), Expect = 0.0
Identities = 384/385 (99%)
Strand = Plus / Minus
Query: 1272 cgcgtctcctccaaacgccaccgctccagctgcagctaccggccggcgcagccgcactta 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58919713 cgcgtctcctccaaacgccaccgctccagctgcagctaccggccggcgcagccgcactta 58919654
Query: 1332 gcgcgtaccgcccccacgtgactcggccagaatcccgcccccgcccgccccacgtgacct 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58919653 gcgcgtaccgcccccacgtgactcggccagaatcccgcccccgcccgccccacgtgacct 58919594
Query: 1392 taagacacacccactcccgcctcgctctggtccctcttctgccctgggttttagctggcc 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58919593 taagacacacccactcccgcctcgctctggtccctcttctgccctgggttttagctggcc 58919534
Query: 1452 ctcccttctcggcaagatggcggtgcccagttgctgtgtgtcaggtttctgggtccggag 1511
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 58919533 ctcccttctcggcaagatggcggtgcccagttgctgtgtgccaggtttctgggtccggag 58919474
Query: 1512 ttccggacagtgtctggggagtctcttcactttcgtctcaaagcgactttgctccgctgc 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58919473 ttccggacagtgtctggggagtctcttcactttcgtctcaaagcgactttgctccgctgc 58919414
Query: 1572 tgccgcctctaggcccatggatgcccagcaactggcagagaggctccgagcccagaaaga 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58919413 tgccgcctctaggcccatggatgcccagcaactggcagagaggctccgagcccagaaaga 58919354
Query: 1632 gaaacaaaaggcgaaggggccggtg 1656
|||||||||||||||||||||||||
Sbjct: 58919353 gaaacaaaaggcgaaggggccggtg 58919329
Score = 755 bits (381), Expect = 0.0
Identities = 384/385 (99%)
Strand = Plus / Minus
Query: 1272 cgcgtctcctccaaacgccaccgctccagctgcagctaccggccggcgcagccgcactta 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59194633 cgcgtctcctccaaacgccaccgctccagctgcagctaccggccggcgcagccgcactta 59194574
Query: 1332 gcgcgtaccgcccccacgtgactcggccagaatcccgcccccgcccgccccacgtgacct 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59194573 gcgcgtaccgcccccacgtgactcggccagaatcccgcccccgcccgccccacgtgacct 59194514
Query: 1392 taagacacacccactcccgcctcgctctggtccctcttctgccctgggttttagctggcc 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59194513 taagacacacccactcccgcctcgctctggtccctcttctgccctgggttttagctggcc 59194454
Query: 1452 ctcccttctcggcaagatggcggtgcccagttgctgtgtgtcaggtttctgggtccggag 1511
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 59194453 ctcccttctcggcaagatggcggtgcccagttgctgtgtgccaggtttctgggtccggag 59194394
Query: 1512 ttccggacagtgtctggggagtctcttcactttcgtctcaaagcgactttgctccgctgc 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59194393 ttccggacagtgtctggggagtctcttcactttcgtctcaaagcgactttgctccgctgc 59194334
Query: 1572 tgccgcctctaggcccatggatgcccagcaactggcagagaggctccgagcccagaaaga 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59194333 tgccgcctctaggcccatggatgcccagcaactggcagagaggctccgagcccagaaaga 59194274
Query: 1632 gaaacaaaaggcgaaggggccggtg 1656
|||||||||||||||||||||||||
Sbjct: 59194273 gaaacaaaaggcgaaggggccggtg 59194249
Score = 561 bits (283), Expect = e-157
Identities = 286/287 (99%)
Strand = Plus / Minus
Query: 283 ctaatcttccccttgtggagatctcacaggtcagccgcctgaaatattctggaaggtcgg 342
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 58963245 ctaatcttccccttgtggagatctcacatgtcagccgcctgaaatattctggaaggtcgg 58963186
Query: 343 catattcatttccataggagatgaccttaatccctttgtccagcatgttttctcgaagct 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58963185 catattcatttccataggagatgaccttaatccctttgtccagcatgttttctcgaagct 58963126
Query: 403 tcttgaactcatccacatctcctctccgaaccagcatgaaatgttctaggtcagatttat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58963125 tcttgaactcatccacatctcctctccgaaccagcatgaaatgttctaggtcagatttat 58963066
Query: 463 gcttgacagcctccagaaaaagggcttggaaagtggtgtcatccactgtccagccgcaac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58963065 gcttgacagcctccagaaaaagggcttggaaagtggtgtcatccactgtccagccgcaac 58963006
Query: 523 ccaggaaaaggaatgacttgttttcatagagtttctgaatctctctc 569
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58963005 ccaggaaaaggaatgacttgttttcatagagtttctgaatctctctc 58962959
Score = 561 bits (283), Expect = e-157
Identities = 286/287 (99%)
Strand = Plus / Minus
Query: 283 ctaatcttccccttgtggagatctcacaggtcagccgcctgaaatattctggaaggtcgg 342
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 59238164 ctaatcttccccttgtggagatctcacatgtcagccgcctgaaatattctggaaggtcgg 59238105
Query: 343 catattcatttccataggagatgaccttaatccctttgtccagcatgttttctcgaagct 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59238104 catattcatttccataggagatgaccttaatccctttgtccagcatgttttctcgaagct 59238045
Query: 403 tcttgaactcatccacatctcctctccgaaccagcatgaaatgttctaggtcagatttat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59238044 tcttgaactcatccacatctcctctccgaaccagcatgaaatgttctaggtcagatttat 59237985
Query: 463 gcttgacagcctccagaaaaagggcttggaaagtggtgtcatccactgtccagccgcaac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59237984 gcttgacagcctccagaaaaagggcttggaaagtggtgtcatccactgtccagccgcaac 59237925
Query: 523 ccaggaaaaggaatgacttgttttcatagagtttctgaatctctctc 569
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59237924 ccaggaaaaggaatgacttgttttcatagagtttctgaatctctctc 59237878
Score = 500 bits (252), Expect = e-138
Identities = 255/256 (99%)
Strand = Plus / Minus
Query: 926 aggagagagtttctggataaggtcatgagcaacatggacaaggttcttgtcttcatggag 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58947161 aggagagagtttctggataaggtcatgagcaacatggacaaggttcttgtcttcatggag 58947102
Query: 986 acatttctgaaattttttgctctcctcatcttctagcagatcaaagtcaatggcagcatc 1045
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 58947101 acatttctgaaattttttgctctcctcatcttctagaagatcaaagtcaatggcagcatc 58947042
Query: 1046 cagtaaggcctgaatcaaccccttccaggatttcagggctgggacctggggtgcgaccgc 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58947041 cagtaaggcctgaatcaaccccttccaggatttcagggctgggacctggggtgcgaccgc 58946982
Query: 1106 agcactgatgcctgttccaatcaccagcacaagctcccgaggcttcttagttttcaggct 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58946981 agcactgatgcctgttccaatcaccagcacaagctcccgaggcttcttagttttcaggct 58946922
Query: 1166 tgggagcagcttcctg 1181
||||||||||||||||
Sbjct: 58946921 tgggagcagcttcctg 58946906
Score = 500 bits (252), Expect = e-138
Identities = 255/256 (99%)
Strand = Plus / Minus
Query: 926 aggagagagtttctggataaggtcatgagcaacatggacaaggttcttgtcttcatggag 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59222079 aggagagagtttctggataaggtcatgagcaacatggacaaggttcttgtcttcatggag 59222020
Query: 986 acatttctgaaattttttgctctcctcatcttctagcagatcaaagtcaatggcagcatc 1045
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 59222019 acatttctgaaattttttgctctcctcatcttctagaagatcaaagtcaatggcagcatc 59221960
Query: 1046 cagtaaggcctgaatcaaccccttccaggatttcagggctgggacctggggtgcgaccgc 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59221959 cagtaaggcctgaatcaaccccttccaggatttcagggctgggacctggggtgcgaccgc 59221900
Query: 1106 agcactgatgcctgttccaatcaccagcacaagctcccgaggcttcttagttttcaggct 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59221899 agcactgatgcctgttccaatcaccagcacaagctcccgaggcttcttagttttcaggct 59221840
Query: 1166 tgggagcagcttcctg 1181
||||||||||||||||
Sbjct: 59221839 tgggagcagcttcctg 59221824
Score = 448 bits (226), Expect = e-123
Identities = 229/230 (99%)
Strand = Plus / Minus
Query: 696 accttcttttcatcagtgaggtcaagggattcaagttgttttccctggtctgctgcatac 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58958512 accttcttttcatcagtgaggtcaagggattcaagttgttttccctggtctgctgcatac 58958453
Query: 756 aattccaggagattgtcaaagttcgtagttaataccagggctccattttccatcaggtgg 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58958452 aattccaggagattgtcaaagttcgtagttaataccagggctccattttccatcaggtgg 58958393
Query: 816 agaactgactgaagtagctgttttccagaatcttccatctttgactccaagtcatcaaat 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58958392 agaactgactgaagtagctgttttccagaatcttccatctttgactccaagtcatcaaat 58958333
Query: 876 acttcatataaacagtccttgaaaaatgtggatcgcacattactagttcg 925
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 58958332 acttcatataaacagtccttgaaaaatgtggatcgtacattactagttcg 58958283
Score = 448 bits (226), Expect = e-123
Identities = 229/230 (99%)
Strand = Plus / Minus
Query: 696 accttcttttcatcagtgaggtcaagggattcaagttgttttccctggtctgctgcatac 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59233430 accttcttttcatcagtgaggtcaagggattcaagttgttttccctggtctgctgcatac 59233371
Query: 756 aattccaggagattgtcaaagttcgtagttaataccagggctccattttccatcaggtgg 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59233370 aattccaggagattgtcaaagttcgtagttaataccagggctccattttccatcaggtgg 59233311
Query: 816 agaactgactgaagtagctgttttccagaatcttccatctttgactccaagtcatcaaat 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59233310 agaactgactgaagtagctgttttccagaatcttccatctttgactccaagtcatcaaat 59233251
Query: 876 acttcatataaacagtccttgaaaaatgtggatcgcacattactagttcg 925
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 59233250 acttcatataaacagtccttgaaaaatgtggatcgtacattactagttcg 59233201
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 1819 ggtggccctggggtccagctctgcatcagtgatgtattacccatcctggcaaagattctt 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58917360 ggtggccctggggtccagctctgcatcagtgatgtattacccatcctggcaaagattctt 58917301
Query: 1879 catggccacaaggcagagcccctgcatctctgccatcgtctagacaaggaaactacaggc 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58917300 catggccacaaggcagagcccctgcatctctgccatcgtctagacaaggaaactacaggc 58917241
Query: 1939 gtaatggtgttggcttgggaaaaagaagtggcacatcaagtccaagagttgtttagaacc 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58917240 gtaatggtgttggcttgggaaaaagaagtggcacatcaagtccaagagttgtttagaacc 58917181
Query: 1999 cgtcaggtggcaaagaagtactgg 2022
||||||||||||||||||||||||
Sbjct: 58917180 cgtcaggtggcaaagaagtactgg 58917157
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 1819 ggtggccctggggtccagctctgcatcagtgatgtattacccatcctggcaaagattctt 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59192280 ggtggccctggggtccagctctgcatcagtgatgtattacccatcctggcaaagattctt 59192221
Query: 1879 catggccacaaggcagagcccctgcatctctgccatcgtctagacaaggaaactacaggc 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59192220 catggccacaaggcagagcccctgcatctctgccatcgtctagacaaggaaactacaggc 59192161
Query: 1939 gtaatggtgttggcttgggaaaaagaagtggcacatcaagtccaagagttgtttagaacc 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59192160 gtaatggtgttggcttgggaaaaagaagtggcacatcaagtccaagagttgtttagaacc 59192101
Query: 1999 cgtcaggtggcaaagaagtactgg 2022
||||||||||||||||||||||||
Sbjct: 59192100 cgtcaggtggcaaagaagtactgg 59192077
Score = 394 bits (199), Expect = e-107
Identities = 214/218 (98%), Gaps = 1/218 (0%)
Strand = Plus / Minus
Query: 7 tgagttttctnngaactgaaccaggccgcagagttatcgagaaccagctggcatgaagtt 66
|||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 58968099 tgagttttctt-gaactggaacaggccgcagagttatcgagaaccagctggcatgaagtt 58968041
Query: 67 aagttggaatacccccaattctaaccccaaccttcaacctctgggttttggtacttggag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58968040 aagttggaatacccccaattctaaccccaaccttcaacctctgggttttggtacttggag 58967981
Query: 127 gagcttgtaagtttacttgttagaaattgtccatggtaggccctttccgcttggtctaag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58967980 gagcttgtaagtttacttgttagaaattgtccatggtaggccctttccgcttggtctaag 58967921
Query: 187 gctggggattcctctagccctctcatgtactacagtct 224
||||||||||||||||||||||||||||||||||||||
Sbjct: 58967920 gctggggattcctctagccctctcatgtactacagtct 58967883
Score = 335 bits (169), Expect = 7e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 1653 ggtgcccacgaaccctgttcagcggagagtacgagaactagtgcggttcacagagcagct 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58918976 ggtgcccacgaaccctgttcagcggagagtacgagaactagtgcggttcacagagcagct 58918917
Query: 1713 gcagcgagtccaccccaatgtgcttgctaaggcgctgagccgaggaattgtccaccagga 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58918916 gcagcgagtccaccccaatgtgcttgctaaggcgctgagccgaggaattgtccaccagga 58918857
Query: 1773 caaggacctgctggtcatcaataagccttatggtctccctgtgcatggt 1821
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58918856 caaggacctgctggtcatcaataagccttatggtctccctgtgcatggt 58918808
Score = 335 bits (169), Expect = 7e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 1653 ggtgcccacgaaccctgttcagcggagagtacgagaactagtgcggttcacagagcagct 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59193896 ggtgcccacgaaccctgttcagcggagagtacgagaactagtgcggttcacagagcagct 59193837
Query: 1713 gcagcgagtccaccccaatgtgcttgctaaggcgctgagccgaggaattgtccaccagga 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59193836 gcagcgagtccaccccaatgtgcttgctaaggcgctgagccgaggaattgtccaccagga 59193777
Query: 1773 caaggacctgctggtcatcaataagccttatggtctccctgtgcatggt 1821
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59193776 caaggacctgctggtcatcaataagccttatggtctccctgtgcatggt 59193728
Score = 278 bits (140), Expect = 1e-71
Identities = 146/148 (98%)
Strand = Plus / Minus
Query: 2114 agatgacgctatgcccgagctaccgcatggacaacgggaagatggtgagagtacggacca 2173
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 58915216 agatgacgctatgcccgagctaccgcatggacaatgggaagatggtgagagtacggacca 58915157
Query: 2174 gccggaacgcacatctggccgtaactcagtaccaggtgctaagcagcaccctctcctctg 2233
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 58915156 gccggaacgcacatctggccgtaactcagtaccaggtgctaagcagtaccctctcctctg 58915097
Query: 2234 ctctcttggagctccagcctgttactgg 2261
||||||||||||||||||||||||||||
Sbjct: 58915096 ctctcttggagctccagcctgttactgg 58915069
Score = 278 bits (140), Expect = 1e-71
Identities = 146/148 (98%)
Strand = Plus / Minus
Query: 2114 agatgacgctatgcccgagctaccgcatggacaacgggaagatggtgagagtacggacca 2173
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 59190136 agatgacgctatgcccgagctaccgcatggacaatgggaagatggtgagagtacggacca 59190077
Query: 2174 gccggaacgcacatctggccgtaactcagtaccaggtgctaagcagcaccctctcctctg 2233
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 59190076 gccggaacgcacatctggccgtaactcagtaccaggtgctaagcagtaccctctcctctg 59190017
Query: 2234 ctctcttggagctccagcctgttactgg 2261
||||||||||||||||||||||||||||
Sbjct: 59190016 ctctcttggagctccagcctgttactgg 59189989
Score = 252 bits (127), Expect = 8e-64
Identities = 130/131 (99%)
Strand = Plus / Minus
Query: 569 cataacttcagtgttcctgagcacattctgatacccagccggatgaaggacgatgccact 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58961700 cataacttcagtgttcctgagcacattctgatacccagccggatgaaggacgatgccact 58961641
Query: 629 agggttggtgtagaccccatggatgtgtaagacgctcagcttcctcttctcctgagccca 688
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58961640 aggattggtgtagaccccatggatgtgtaagacgctcagcttcctcttctcctgagccca 58961581
Query: 689 ctccaggacct 699
|||||||||||
Sbjct: 58961580 ctccaggacct 58961570
Score = 252 bits (127), Expect = 8e-64
Identities = 130/131 (99%)
Strand = Plus / Minus
Query: 569 cataacttcagtgttcctgagcacattctgatacccagccggatgaaggacgatgccact 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59236619 cataacttcagtgttcctgagcacattctgatacccagccggatgaaggacgatgccact 59236560
Query: 629 agggttggtgtagaccccatggatgtgtaagacgctcagcttcctcttctcctgagccca 688
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59236559 aggattggtgtagaccccatggatgtgtaagacgctcagcttcctcttctcctgagccca 59236500
Query: 689 ctccaggacct 699
|||||||||||
Sbjct: 59236499 ctccaggacct 59236489
Score = 188 bits (95), Expect = 1e-44
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 2260 ggaataaaacatcagcttcgagttcacctgtcttttggattggattgcccaatcctcggt 2319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58913392 ggaataaaacatcagcttcgagttcacctgtcttttggattggattgcccaatcctcggt 58913333
Query: 2320 gatcataagtactcagactggaacaggctggcccc 2354
|||||||||||||||||||||||||||||||||||
Sbjct: 58913332 gatcataagtactcagactggaacaggctggcccc 58913298
Score = 188 bits (95), Expect = 1e-44
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1178 cctgggctttttggtggggggtgcgccatcactgaagaatcccaaaatcttgtctatatc 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58944697 cctgggctttttggtggggggtgcgccatcactgaagaatcccaaaatcttgtctatatc 58944638
Query: 1238 cgaggcctggctccctgtagaagccatccagtttc 1272
|||||||||||||||||||||||||||||||||||
Sbjct: 58944637 cgaggcctggctccctgtagaagccatccagtttc 58944603
Score = 188 bits (95), Expect = 1e-44
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 2260 ggaataaaacatcagcttcgagttcacctgtcttttggattggattgcccaatcctcggt 2319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59188312 ggaataaaacatcagcttcgagttcacctgtcttttggattggattgcccaatcctcggt 59188253
Query: 2320 gatcataagtactcagactggaacaggctggcccc 2354
|||||||||||||||||||||||||||||||||||
Sbjct: 59188252 gatcataagtactcagactggaacaggctggcccc 59188218
Score = 188 bits (95), Expect = 1e-44
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1178 cctgggctttttggtggggggtgcgccatcactgaagaatcccaaaatcttgtctatatc 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59219615 cctgggctttttggtggggggtgcgccatcactgaagaatcccaaaatcttgtctatatc 59219556
Query: 1238 cgaggcctggctccctgtagaagccatccagtttc 1272
|||||||||||||||||||||||||||||||||||
Sbjct: 59219555 cgaggcctggctccctgtagaagccatccagtttc 59219521
Score = 180 bits (91), Expect = 2e-42
Identities = 94/95 (98%)
Strand = Plus / Minus
Query: 2021 gggctattactgtgtgcgtcccggtgccctcagcaggagtcgtggacatccccatcatcg 2080
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58915384 gggctattactgtgcgcgtcccggtgccctcagcaggagtcgtggacatccccatcatcg 58915325
Query: 2081 agaaggaggtgcagggccagcagcagcaccacaag 2115
|||||||||||||||||||||||||||||||||||
Sbjct: 58915324 agaaggaggtgcagggccagcagcagcaccacaag 58915290
Score = 180 bits (91), Expect = 2e-42
Identities = 94/95 (98%)
Strand = Plus / Minus
Query: 2021 gggctattactgtgtgcgtcccggtgccctcagcaggagtcgtggacatccccatcatcg 2080
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59190304 gggctattactgtgcgcgtcccggtgccctcagcaggagtcgtggacatccccatcatcg 59190245
Query: 2081 agaaggaggtgcagggccagcagcagcaccacaag 2115
|||||||||||||||||||||||||||||||||||
Sbjct: 59190244 agaaggaggtgcagggccagcagcagcaccacaag 59190210
Score = 119 bits (60), Expect = 8e-24
Identities = 63/64 (98%)
Strand = Plus / Minus
Query: 223 ctcttatctcactgtgtgctgtagacgagccattgagctgaccttctctcaccatccctg 282
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58967644 ctcttatgtcactgtgtgctgtagacgagccattgagctgaccttctctcaccatccctg 58967585
Query: 283 ctaa 286
||||
Sbjct: 58967584 ctaa 58967581
>Sscrofa_Chr07
|| Length = 134764511
Score = 337 bits (170), Expect = 2e-89
Identities = 219/235 (93%), Gaps = 4/235 (1%)
Strand = Plus / Plus
Query: 865 agtcatcaaatacttcatataaacagtccttgaaaaatgtggatcgcacattactagttc 924
||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 58806753 agtcatcaaatcctttatgtaaacagtccttgaaaaatgtggatcgcacattactagttc 58806812
Query: 925 gaggagagagtttctggataaggtcatgagcaacatggacaaggttcttgtcttcatgga 984
|||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 58806813 taggagagagtatctggataaggtcatgggcaacctggacaaggttcttgtcttca---- 58806868
Query: 985 gacatttctgaaattttttgctctcctcatcttctagcagatcaaagtcaatggcagcat 1044
|||||||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 58806869 gacatttcagagattttttgctctcctcatcttctagaagatcaaagtcaagggcagcat 58806928
Query: 1045 ccagtaaggcctgaatcaaccccttccaggatttcagggctgggacctggggtgc 1099
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58806929 ccagtaaggcccgaatcaaccccttccaggatttcagggctgggacctggggtgc 58806983
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 69,359,321
Number of extensions: 441
Number of successful extensions: 441
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 25
Length of query: 2432
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2410
Effective length of database: 2,808,408,574
Effective search space: 6768264663340
Effective search space used: 6768264663340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)