Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013179
(925 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098936.1| beta-2-syntrophin [Bos taurus]. 343 2e-94
Alignment gi|XP_002692858.1| PREDICTED: basic beta 1 syntrophin-like [Bos... 221 7e-58
Alignment gi|XP_875352.2| PREDICTED: basic beta 1 syntrophin [Bos taurus]. 221 7e-58
Alignment gi|NP_001069366.1| alpha-1-syntrophin [Bos taurus]. 176 2e-44
Alignment gi|XP_872645.2| PREDICTED: syntrophin, gamma 2 [Bos taurus]. 95 8e-20
Alignment gi|XP_595522.3| PREDICTED: syntrophin, gamma 1 [Bos taurus]. 84 1e-16
Alignment gi|NP_001193086.1| Golgi-associated PDZ and coiled-coil motif-c... 81 1e-15
Alignment gi|XP_002690139.1| PREDICTED: golgi associated PDZ and coiled-c... 81 1e-15
Alignment gi|XP_002690138.1| PREDICTED: golgi associated PDZ and coiled-c... 81 1e-15
Alignment gi|XP_614940.2| PREDICTED: golgi associated PDZ and coiled-coil... 81 1e-15
>ref|NP_001098936.1| beta-2-syntrophin [Bos taurus].
Length = 540
Score = 343 bits (879), Expect = 2e-94
Identities = 191/282 (67%), Positives = 191/282 (67%)
Frame = +2
Query: 80 WTRATKAGXXXXXXXXXXXXXXXXXSGESLSLTXXXXXXXXXXXXXXXXXXXXXXXXXXX 259
WTRATKAG SGESLSLT
Sbjct: 19 WTRATKAGLVELLLRERWVRVVAELSGESLSLTGDAAAAESEPALGPAAAAFNGLPNGGG 78
Query: 260 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRVRVVKQEAGGLGISIKGGRENRM 439
VRRVRVVKQEAGGLGISIKGGRENRM
Sbjct: 79 AGDSLPGSPSRGLGPPSPPAPPRSPAGEAGASPPVRRVRVVKQEAGGLGISIKGGRENRM 138
Query: 440 PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIR 619
PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIR
Sbjct: 139 PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIR 198
Query: 620 EVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXXXKHQNSTKDRKVIPLKMCFAARNLS 799
EVTPYIKKPSLVSDLPWEGAAPQ KHQNSTKDRKVIPLKMCFAARNLS
Sbjct: 199 EVTPYIKKPSLVSDLPWEGAAPQSPSFSGSEDSGSPKHQNSTKDRKVIPLKMCFAARNLS 258
Query: 800 MPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNIM 925
MPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNIM
Sbjct: 259 MPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNIM 300
>ref|XP_002692858.1| PREDICTED: basic beta 1 syntrophin-like [Bos taurus].
Length = 686
Score = 221 bits (563), Expect = 7e-58
Identities = 111/187 (59%), Positives = 143/187 (76%), Gaps = 1/187 (0%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V+V+KQE GGLGISIKGG+EN+MPILISKIF GLAADQ++AL +GDAILSVNG DLR
Sbjct: 259 RGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRD 318
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQALKRAG+EVLLEVK++RE TPY+ K S VS++ WE P+
Sbjct: 319 ATHDEAVQALKRAGREVLLEVKYMREATPYVTKGSPVSEIGWETPPPESPRLGAGAPDPL 378
Query: 725 XKHQNS-TKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 901
S +DR+ IPL+MCF R+L++ D E+R +E+HSPD+++T++LR KD+ATA +WF
Sbjct: 379 ASQPPSFHRDRRSIPLRMCFVTRSLALADPESRQLEIHSPDAKHTVVLRGKDSATAQAWF 438
Query: 902 VAIHTNI 922
AIH +
Sbjct: 439 SAIHATV 445
>ref|XP_875352.2| PREDICTED: basic beta 1 syntrophin [Bos taurus].
Length = 686
Score = 221 bits (563), Expect = 7e-58
Identities = 111/187 (59%), Positives = 143/187 (76%), Gaps = 1/187 (0%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V+V+KQE GGLGISIKGG+EN+MPILISKIF GLAADQ++AL +GDAILSVNG DLR
Sbjct: 259 RGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRD 318
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQALKRAG+EVLLEVK++RE TPY+ K S VS++ WE P+
Sbjct: 319 ATHDEAVQALKRAGREVLLEVKYMREATPYVTKGSPVSEIGWETPPPESPRLGAGAPDPL 378
Query: 725 XKHQNS-TKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 901
S +DR+ IPL+MCF R+L++ D E+R +E+HSPD+++T++LR KD+ATA +WF
Sbjct: 379 ASQPPSFHRDRRSIPLRMCFVTRSLALADPESRQLEIHSPDAKHTVVLRGKDSATAQAWF 438
Query: 902 VAIHTNI 922
AIH +
Sbjct: 439 SAIHATV 445
>ref|NP_001069366.1| alpha-1-syntrophin [Bos taurus].
Length = 505
Score = 176 bits (447), Expect = 2e-44
Identities = 95/186 (51%), Positives = 121/186 (65%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
RRV V K +AGGLGISIKGGREN+MPILISKIF GLAADQ+ AL +GDAILSVNG DL
Sbjct: 86 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 145
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQ LK+ GKEV+LEVK+++EV+PY K + + + W+
Sbjct: 146 ATHDEAVQVLKKTGKEVVLEVKYMKEVSPYFKNSASGTSVGWDSPPASPLQRQPSSPGPP 205
Query: 725 XKHQNSTKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFV 904
+ +D K + LKM + +R + D E R +E+ S D R+TL LR KD A+A SW
Sbjct: 206 PR---DLRDAKHMSLKMAYVSRRCTPTDPETRYLEICSADGRDTLFLRAKDEASAKSWAA 262
Query: 905 AIHTNI 922
AI +
Sbjct: 263 AIQAQV 268
>ref|XP_872645.2| PREDICTED: syntrophin, gamma 2 [Bos taurus].
Length = 893
Score = 95.1 bits (235), Expect = 8e-20
Identities = 47/94 (50%), Positives = 66/94 (70%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V + +Q GGLG+SIKGG E+ +P++ISKIF LAADQ+ L +GDA+L VNG ++
Sbjct: 426 RTVTLRRQPVGGLGLSIKGGVEHGVPVVISKIFRDLAADQTGMLFVGDALLQVNGINVES 485
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKP 646
ATH + V LK AG EV + V+++RE ++K P
Sbjct: 486 ATHKEVVHLLKNAGDEVTVTVEYLREAPSFLKLP 519
>ref|XP_595522.3| PREDICTED: syntrophin, gamma 1 [Bos taurus].
Length = 575
Score = 84.3 bits (207), Expect = 1e-16
Identities = 39/92 (42%), Positives = 61/92 (66%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V + +Q GG G+SIKGG E+ +P+++SKI A+ S L +GDAIL +NG ++R+
Sbjct: 114 RTVTIRRQAVGGFGLSIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRK 173
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIK 640
H++ VQ L+ AG+EV L V F++ ++K
Sbjct: 174 CRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLK 205
>ref|NP_001193086.1| Golgi-associated PDZ and coiled-coil motif-containing protein [Bos
taurus].
Length = 463
Score = 80.9 bits (198), Expect = 1e-15
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 287 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 346
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 347 DTKHKEAVTILSQQRGEIEFEVVYV 371
>ref|XP_002690139.1| PREDICTED: golgi associated PDZ and coiled-coil motif containing
isoform 2 [Bos taurus].
Length = 455
Score = 80.9 bits (198), Expect = 1e-15
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 279 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 338
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 339 DTKHKEAVTILSQQRGEIEFEVVYV 363
>ref|XP_002690138.1| PREDICTED: golgi associated PDZ and coiled-coil motif containing
isoform 1 [Bos taurus].
Length = 463
Score = 80.9 bits (198), Expect = 1e-15
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 287 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 346
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 347 DTKHKEAVTILSQQRGEIEFEVVYV 371
>ref|XP_614940.2| PREDICTED: golgi associated PDZ and coiled-coil motif containing
isoform 2 [Bos taurus].
Length = 455
Score = 80.9 bits (198), Expect = 1e-15
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 279 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 338
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 339 DTKHKEAVTILSQQRGEIEFEVVYV 363
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 21,258,103
Number of extensions: 420472
Number of successful extensions: 1391
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 93
Length of query: 308
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,306,398
Effective search space: 2947117988
Effective search space used: 2947117988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013179
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013179
(925 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536806.2| PREDICTED: similar to Beta-2-syntrophin (59 kDa... 339 2e-93
Alignment gi|XP_861426.1| PREDICTED: similar to basic beta 1 syntrophin i... 228 6e-60
Alignment gi|XP_539151.2| PREDICTED: similar to basic beta 1 syntrophin i... 228 6e-60
Alignment gi|XP_861385.1| PREDICTED: similar to basic beta 1 syntrophin i... 228 6e-60
Alignment gi|XP_861357.1| PREDICTED: similar to basic beta 1 syntrophin i... 228 6e-60
Alignment gi|XP_863072.1| PREDICTED: similar to Alpha-1-syntrophin (59 kD... 150 2e-36
Alignment gi|XP_542961.2| PREDICTED: similar to Alpha-1-syntrophin (59 kD... 150 2e-36
Alignment gi|XP_544072.2| PREDICTED: similar to Gamma-1-syntrophin (G1SYN... 87 3e-17
Alignment gi|XP_541217.2| PREDICTED: similar to golgi associated PDZ and ... 81 2e-15
Alignment gi|XP_549062.2| PREDICTED: similar to synapse-associated protei... 67 2e-11
>ref|XP_536806.2| PREDICTED: similar to Beta-2-syntrophin (59 kDa
dystrophin-associated protein A1, basic component 2)
(Syntrophin 3) (SNT3) (Syntrophin-like) (SNTL) [Canis
familiaris].
Length = 568
Score = 339 bits (870), Expect = 2e-93
Identities = 189/282 (67%), Positives = 191/282 (67%)
Frame = +2
Query: 80 WTRATKAGXXXXXXXXXXXXXXXXXSGESLSLTXXXXXXXXXXXXXXXXXXXXXXXXXXX 259
WTRATKAG SGESLSLT
Sbjct: 47 WTRATKAGLVELLLRERWVRVVAELSGESLSLTGDAAAAEPEAALGPAAAAFNGLPNGGG 106
Query: 260 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRVRVVKQEAGGLGISIKGGRENRM 439
VRRVRVVKQEAGGLGISIKGGRENRM
Sbjct: 107 AGDSLPGSPSRGLGPPSPPAPPRGPAGEAGASPPVRRVRVVKQEAGGLGISIKGGRENRM 166
Query: 440 PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIR 619
PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIR
Sbjct: 167 PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIR 226
Query: 620 EVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXXXKHQNSTKDRKVIPLKMCFAARNLS 799
EVTPYIKKPSLVSDLPWEGA+PQ KHQNSTKDRKVIPLKMCFAARNLS
Sbjct: 227 EVTPYIKKPSLVSDLPWEGASPQSPSFSGSEDSGSPKHQNSTKDRKVIPLKMCFAARNLS 286
Query: 800 MPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNIM 925
MPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAI+TNIM
Sbjct: 287 MPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIYTNIM 328
>ref|XP_861426.1| PREDICTED: similar to basic beta 1 syntrophin isoform 4 [Canis
familiaris].
Length = 527
Score = 228 bits (581), Expect = 6e-60
Identities = 115/187 (61%), Positives = 145/187 (77%), Gaps = 1/187 (0%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V+V+KQE GGLGISIKGG+EN+MPILISKIF GLAADQ++AL +GDAILSVNG DLR
Sbjct: 103 RGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRD 162
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQALKRAG+EVLLEVK++RE TPY+KK S VS++ WE P+
Sbjct: 163 ATHDEAVQALKRAGREVLLEVKYMREATPYVKKGSPVSEIGWETPPPESPRLGASSSDPL 222
Query: 725 XKHQNS-TKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 901
S +DRK IPLKMC+ R+++ D ENR +E+HSPD+++T+ILR KD+ATA +WF
Sbjct: 223 SSQPCSFHRDRKSIPLKMCYVTRSMASADPENRQLEIHSPDAKHTVILRSKDSATAQAWF 282
Query: 902 VAIHTNI 922
AIH+N+
Sbjct: 283 SAIHSNV 289
>ref|XP_539151.2| PREDICTED: similar to basic beta 1 syntrophin isoform 1 [Canis
familiaris].
Length = 530
Score = 228 bits (581), Expect = 6e-60
Identities = 115/187 (61%), Positives = 145/187 (77%), Gaps = 1/187 (0%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V+V+KQE GGLGISIKGG+EN+MPILISKIF GLAADQ++AL +GDAILSVNG DLR
Sbjct: 103 RGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRD 162
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQALKRAG+EVLLEVK++RE TPY+KK S VS++ WE P+
Sbjct: 163 ATHDEAVQALKRAGREVLLEVKYMREATPYVKKGSPVSEIGWETPPPESPRLGASSSDPL 222
Query: 725 XKHQNS-TKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 901
S +DRK IPLKMC+ R+++ D ENR +E+HSPD+++T+ILR KD+ATA +WF
Sbjct: 223 SSQPCSFHRDRKSIPLKMCYVTRSMASADPENRQLEIHSPDAKHTVILRSKDSATAQAWF 282
Query: 902 VAIHTNI 922
AIH+N+
Sbjct: 283 SAIHSNV 289
>ref|XP_861385.1| PREDICTED: similar to basic beta 1 syntrophin isoform 3 [Canis
familiaris].
Length = 529
Score = 228 bits (581), Expect = 6e-60
Identities = 115/187 (61%), Positives = 145/187 (77%), Gaps = 1/187 (0%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V+V+KQE GGLGISIKGG+EN+MPILISKIF GLAADQ++AL +GDAILSVNG DLR
Sbjct: 103 RGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRD 162
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQALKRAG+EVLLEVK++RE TPY+KK S VS++ WE P+
Sbjct: 163 ATHDEAVQALKRAGREVLLEVKYMREATPYVKKGSPVSEIGWETPPPESPRLGASSSDPL 222
Query: 725 XKHQNS-TKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 901
S +DRK IPLKMC+ R+++ D ENR +E+HSPD+++T+ILR KD+ATA +WF
Sbjct: 223 SSQPCSFHRDRKSIPLKMCYVTRSMASADPENRQLEIHSPDAKHTVILRSKDSATAQAWF 282
Query: 902 VAIHTNI 922
AIH+N+
Sbjct: 283 SAIHSNV 289
>ref|XP_861357.1| PREDICTED: similar to basic beta 1 syntrophin isoform 2 [Canis
familiaris].
Length = 498
Score = 228 bits (581), Expect = 6e-60
Identities = 115/187 (61%), Positives = 145/187 (77%), Gaps = 1/187 (0%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V+V+KQE GGLGISIKGG+EN+MPILISKIF GLAADQ++AL +GDAILSVNG DLR
Sbjct: 103 RGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRD 162
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQALKRAG+EVLLEVK++RE TPY+KK S VS++ WE P+
Sbjct: 163 ATHDEAVQALKRAGREVLLEVKYMREATPYVKKGSPVSEIGWETPPPESPRLGASSSDPL 222
Query: 725 XKHQNS-TKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 901
S +DRK IPLKMC+ R+++ D ENR +E+HSPD+++T+ILR KD+ATA +WF
Sbjct: 223 SSQPCSFHRDRKSIPLKMCYVTRSMASADPENRQLEIHSPDAKHTVILRSKDSATAQAWF 282
Query: 902 VAIHTNI 922
AIH+N+
Sbjct: 283 SAIHSNV 289
>ref|XP_863072.1| PREDICTED: similar to Alpha-1-syntrophin (59 kDa
dystrophin-associated protein A1, acidic component 1)
(Pro-TGF-alpha cytoplasmic domain-interacting protein 1)
(TACIP1) (Syntrophin 1) isoform 2 [Canis familiaris].
Length = 515
Score = 150 bits (378), Expect = 2e-36
Identities = 80/168 (47%), Positives = 106/168 (63%)
Frame = +2
Query: 419 GGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVL 598
GGREN+MPILISKIF GLAADQ+ AL +GDAILSVNG DL ATHD+AVQ LK+ GKEV+
Sbjct: 107 GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQVLKKTGKEVV 166
Query: 599 LEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXXXKHQNSTKDRKVIPLKMC 778
LEVK+++EV+PY K + + + W+ + D K + LKM
Sbjct: 167 LEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLPRQPSSPGPSPR---DLSDAKHMSLKMA 223
Query: 779 FAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNI 922
+ +R + D E+R +E+ S D ++TL LR KD A+A SW AI +
Sbjct: 224 YVSRRCTSTDPEHRYLEICSADGQDTLFLRAKDEASAKSWAAAIQAQV 271
>ref|XP_542961.2| PREDICTED: similar to Alpha-1-syntrophin (59 kDa
dystrophin-associated protein A1, acidic component 1)
(Pro-TGF-alpha cytoplasmic domain-interacting protein 1)
(TACIP1) (Syntrophin 1) isoform 1 [Canis familiaris].
Length = 508
Score = 150 bits (378), Expect = 2e-36
Identities = 80/168 (47%), Positives = 106/168 (63%)
Frame = +2
Query: 419 GGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVL 598
GGREN+MPILISKIF GLAADQ+ AL +GDAILSVNG DL ATHD+AVQ LK+ GKEV+
Sbjct: 107 GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQVLKKTGKEVV 166
Query: 599 LEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXXXKHQNSTKDRKVIPLKMC 778
LEVK+++EV+PY K + + + W+ + D K + LKM
Sbjct: 167 LEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLPRQPSSPGPSPR---DLSDAKHMSLKMA 223
Query: 779 FAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNI 922
+ +R + D E+R +E+ S D ++TL LR KD A+A SW AI +
Sbjct: 224 YVSRRCTSTDPEHRYLEICSADGQDTLFLRAKDEASAKSWAAAIQAQV 271
>ref|XP_544072.2| PREDICTED: similar to Gamma-1-syntrophin (G1SYN) (Syntrophin 4)
(SYN4) [Canis familiaris].
Length = 517
Score = 86.7 bits (213), Expect = 3e-17
Identities = 41/94 (43%), Positives = 62/94 (65%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V + +Q GG G+SIKGG E+ +P++ISKI A+ S L +GDAIL +NG ++R+
Sbjct: 56 RTVTIRRQTVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRK 115
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKP 646
H++ VQ L+ AG+EV L V F++ ++K P
Sbjct: 116 CRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLP 149
>ref|XP_541217.2| PREDICTED: similar to golgi associated PDZ and coiled-coil motif
containing isoform a [Canis familiaris].
Length = 380
Score = 80.9 bits (198), Expect = 2e-15
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 204 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 263
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 264 DTKHKEAVTILSQQRGEIEFEVVYV 288
>ref|XP_549062.2| PREDICTED: similar to synapse-associated protein 102 isoform 1
[Canis familiaris].
Length = 849
Score = 67.4 bits (163), Expect = 2e-11
Identities = 42/96 (43%), Positives = 57/96 (59%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHD 556
++ + + GLG +I GG + I +S I G AD S LR GD ILSVNG +LR ATH+
Sbjct: 406 ILHKGSTGLGFNIVGGEDGE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 464
Query: 557 QAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDL 664
QA ALKRAG+ V + ++ E Y + S + DL
Sbjct: 465 QAAAALKRAGQSVTIVAQYRPE--EYSRFESKIHDL 498
Score = 56.2 bits (134), Expect = 4e-08
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGREN-RMP----ILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
V+++ GLG SI GG +N +P I I+KI PG AA L + D +L VN D+
Sbjct: 151 VLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVS 210
Query: 542 QATHDQAVQALKRAGKEVLLEVK 610
+ H +AV+ALK AG V L V+
Sbjct: 211 EVVHSRAVEALKEAGPVVRLVVR 233
Score = 52.8 bits (125), Expect = 5e-07
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +2
Query: 398 GLGISIKGGRENRM-----PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQA 562
GLG SI GG N+ I I+KI G AA + L++GD +L+VN T+L+ H++A
Sbjct: 253 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 312
Query: 563 VQALKRAGKEVLLEV 607
V +LK V L+V
Sbjct: 313 VASLKNTSDMVYLKV 327
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,131,527
Number of extensions: 429588
Number of successful extensions: 1476
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 1427
Number of HSP's successfully gapped: 83
Length of query: 308
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 206
Effective length of database: 15,474,232
Effective search space: 3187691792
Effective search space used: 3187691792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013179
(925 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359993.1| PREDICTED: alpha-1-syntrophin [Sus scrofa]. 174 5e-44
Alignment gi|XP_003355820.1| PREDICTED: beta-2-syntrophin-like [Sus scrof... 156 1e-38
Alignment gi|XP_001924315.1| PREDICTED: beta-1-syntrophin [Sus scrofa]. 108 5e-24
Alignment gi|XP_003121290.1| PREDICTED: golgi-associated PDZ and coiled-c... 81 9e-16
Alignment gi|XP_003121289.1| PREDICTED: golgi-associated PDZ and coiled-c... 81 9e-16
Alignment gi|XP_003135199.2| PREDICTED: disks large homolog 3 [Sus scrofa]. 66 2e-11
Alignment gi|XP_003122952.1| PREDICTED: protein lin-7 homolog C-like [Sus... 66 2e-11
Alignment gi|XP_003127347.2| PREDICTED: protein lin-7 homolog B-like [Sus... 65 4e-11
Alignment gi|XP_003354995.1| PREDICTED: disks large homolog 4, partial [S... 65 5e-11
Alignment gi|XP_003126793.2| PREDICTED: protein lin-7 homolog A-like [Sus... 64 9e-11
>ref|XP_003359993.1| PREDICTED: alpha-1-syntrophin [Sus scrofa].
Length = 505
Score = 174 bits (442), Expect = 5e-44
Identities = 94/186 (50%), Positives = 120/186 (64%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V V K +AGGLGISIKGGREN+MPILISKIF GLAADQ+ AL +GDAILSVNG DL
Sbjct: 86 RFVTVHKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 145
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQ LK+ GKEV+LEVK+++EV+PY K + + + W+
Sbjct: 146 ATHDEAVQVLKKTGKEVVLEVKYMKEVSPYFKNSASGTSVGWDSPPASPLQRQPSSPGPL 205
Query: 725 XKHQNSTKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFV 904
+ D K + LKM + +R + DLE R +E+ S D ++TL LR KD A+A SW
Sbjct: 206 PR---DLSDAKHVSLKMAYVSRRCTPTDLETRYLEICSADGQDTLFLRAKDEASAKSWAA 262
Query: 905 AIHTNI 922
AI +
Sbjct: 263 AIQAQV 268
>ref|XP_003355820.1| PREDICTED: beta-2-syntrophin-like [Sus scrofa].
Length = 446
Score = 156 bits (395), Expect = 1e-38
Identities = 97/175 (55%), Positives = 97/175 (55%)
Frame = +2
Query: 80 WTRATKAGXXXXXXXXXXXXXXXXXSGESLSLTXXXXXXXXXXXXXXXXXXXXXXXXXXX 259
WTRATKAG SGESLSLT
Sbjct: 19 WTRATKAGLVELLLRERWVRVVAELSGESLSLTGDAAAAEPEPALGPAAAAFNGLPNGGG 78
Query: 260 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRVRVVKQEAGGLGISIKGGRENRM 439
VRRVRVVKQEAGGLGISIKGGRENRM
Sbjct: 79 AGDSLPGSPSRGLGPPSPPAPPRGPASEAGASPPVRRVRVVKQEAGGLGISIKGGRENRM 138
Query: 440 PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLE 604
PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLE
Sbjct: 139 PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLE 193
>ref|XP_001924315.1| PREDICTED: beta-1-syntrophin [Sus scrofa].
Length = 382
Score = 108 bits (269), Expect = 5e-24
Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
Frame = +2
Query: 596 LLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXXXKHQNST--KDRKVIPL 769
LL VK++RE TPY+KK S VS++ WE P+ S+ +DRK IPL
Sbjct: 31 LLAVKYMREATPYVKKGSPVSEIGWETPPPESPRLGGSSSDPPSSQSFSSFQRDRKSIPL 90
Query: 770 KMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNI 922
KMC+ R++++ D ENR +E+HSPD+++T+ILR KD+ATA WF AIH+NI
Sbjct: 91 KMCYVTRSMALADPENRQLEIHSPDAKHTVILRSKDSATAQVWFSAIHSNI 141
>ref|XP_003121290.1| PREDICTED: golgi-associated PDZ and coiled-coil motif-containing
protein isoform 2 [Sus scrofa].
Length = 463
Score = 80.9 bits (198), Expect = 9e-16
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 287 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 346
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 347 DTKHKEAVTILSQQRGEIEFEVVYV 371
>ref|XP_003121289.1| PREDICTED: golgi-associated PDZ and coiled-coil motif-containing
protein isoform 1 [Sus scrofa].
Length = 455
Score = 80.9 bits (198), Expect = 9e-16
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 279 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 338
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 339 DTKHKEAVTILSQQRGEIEFEVVYV 363
>ref|XP_003135199.2| PREDICTED: disks large homolog 3 [Sus scrofa].
Length = 992
Score = 66.2 bits (160), Expect = 2e-11
Identities = 37/79 (46%), Positives = 50/79 (63%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHD 556
++ + + GLG +I GG + I +S I G AD S LR GD ILSVNG +LR ATH+
Sbjct: 388 ILHKGSTGLGFNIVGGEDGE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 446
Query: 557 QAVQALKRAGKEVLLEVKF 613
QA ALKRAG+ V + ++
Sbjct: 447 QAAAALKRAGQSVTIVAQY 465
Score = 56.2 bits (134), Expect = 2e-08
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGREN-RMP----ILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
V+++ GLG SI GG +N +P I I+KI PG AA L + D +L VN D+
Sbjct: 133 VLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVS 192
Query: 542 QATHDQAVQALKRAGKEVLLEVK 610
+ H +AV+ALK AG V L V+
Sbjct: 193 EVVHSRAVEALKEAGPVVRLVVR 215
Score = 52.8 bits (125), Expect = 3e-07
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +2
Query: 398 GLGISIKGGRENRM-----PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQA 562
GLG SI GG N+ I I+KI G AA + L++GD +L+VN T+L+ H++A
Sbjct: 235 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 294
Query: 563 VQALKRAGKEVLLEV 607
V +LK V L+V
Sbjct: 295 VASLKNTSDMVYLKV 309
>ref|XP_003122952.1| PREDICTED: protein lin-7 homolog C-like [Sus scrofa].
Length = 197
Score = 66.2 bits (160), Expect = 2e-11
Identities = 36/86 (41%), Positives = 52/86 (60%)
Frame = +2
Query: 368 RVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQA 547
RV + + GLG +I GG+E PI IS+I PG AD+ L+ GD +LSVNG +
Sbjct: 92 RVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRHGGLKRGDQLLSVNGVSVEGE 151
Query: 548 THDQAVQALKRAGKEVLLEVKFIREV 625
H++AV+ LK A +V L V++ +V
Sbjct: 152 HHEKAVELLKAAQGKVKLVVRYTPKV 177
>ref|XP_003127347.2| PREDICTED: protein lin-7 homolog B-like [Sus scrofa].
Length = 207
Score = 65.5 bits (158), Expect = 4e-11
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +2
Query: 398 GLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 577
GLG +I GG+E PI IS++ PG AD+ L+ GD +LSVNG + H++AV+ LK
Sbjct: 102 GLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLK 161
Query: 578 RAGKEVLLEVKFIREV 625
A V L V++ V
Sbjct: 162 AAQGSVKLVVRYTPRV 177
>ref|XP_003354995.1| PREDICTED: disks large homolog 4, partial [Sus scrofa].
Length = 654
Score = 65.1 bits (157), Expect = 5e-11
Identities = 40/83 (48%), Positives = 52/83 (62%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
RR+ V+ + + GLG +I GG + I IS I G AD S LR GD ILSVNG DLR
Sbjct: 242 RRI-VIHRGSTGLGFNIVGGEDGE-GIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 299
Query: 545 ATHDQAVQALKRAGKEVLLEVKF 613
A+H+QA ALK AG+ V + ++
Sbjct: 300 ASHEQAAIALKNAGQTVTIIAQY 322
Score = 62.8 bits (151), Expect = 3e-10
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Frame = +2
Query: 398 GLGISIKGGRENRM-----PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQA 562
GLG SI GG +N I I+KI PG AA Q LR+ D+IL VN D+R+ TH A
Sbjct: 4 GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 63
Query: 563 VQALKRAGKEVLLEV 607
V+ALK AG V L V
Sbjct: 64 VEALKEAGSIVRLYV 78
Score = 48.9 bits (115), Expect = 4e-06
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +2
Query: 398 GLGISIKGGRENRM-----PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQA 562
GLG SI GG N+ I ++KI G AA + L++GD IL+VN L H+ A
Sbjct: 99 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 158
Query: 563 VQALKRAGKEVLLEV 607
V ALK V L+V
Sbjct: 159 VAALKNTYDVVYLKV 173
>ref|XP_003126793.2| PREDICTED: protein lin-7 homolog A-like [Sus scrofa].
Length = 186
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = +2
Query: 398 GLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 577
GLG ++ GG+E PI IS+I PG A++ L+ GD +LSVNG + H++AV+ LK
Sbjct: 70 GLGFNVMGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLK 129
Query: 578 RAGKEVLLEVKFIREV 625
A V L V++ +V
Sbjct: 130 AAKDSVKLVVRYTPKV 145
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 13,697,620
Number of extensions: 268156
Number of successful extensions: 898
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 56
Length of query: 308
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 209
Effective length of database: 8,879,129
Effective search space: 1855737961
Effective search space used: 1855737961
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013179
(925 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033255.1| beta-2-syntrophin [Mus musculus]. 339 2e-93
Alignment gi|NP_057876.1| beta-1-syntrophin [Mus musculus]. 231 5e-61
Alignment gi|NP_033254.2| alpha-1-syntrophin [Mus musculus]. 170 2e-42
Alignment gi|NP_766539.2| gamma-2-syntrophin [Mus musculus]. 97 2e-20
Alignment gi|NP_081947.2| gamma-1-syntrophin [Mus musculus]. 87 2e-17
Alignment gi|NP_001186201.1| Golgi-associated PDZ and coiled-coil motif-c... 81 1e-15
Alignment gi|NP_444417.2| Golgi-associated PDZ and coiled-coil motif-cont... 81 1e-15
Alignment gi|NP_001171250.1| disks large homolog 3 isoform 3 [Mus musculu... 67 1e-11
Alignment gi|NP_001171249.1| disks large homolog 3 isoform 2 [Mus musculu... 67 1e-11
Alignment gi|NP_058027.1| disks large homolog 3 isoform 1 [Mus musculus]. 67 1e-11
>ref|NP_033255.1| beta-2-syntrophin [Mus musculus].
Length = 520
Score = 339 bits (870), Expect = 2e-93
Identities = 173/188 (92%), Positives = 175/188 (93%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR
Sbjct: 93 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 152
Query: 542 QATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXX 721
QATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGA+PQ
Sbjct: 153 QATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGASPQSPSFSGSEDSG 212
Query: 722 XXKHQNSTKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 901
KHQN+TKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF
Sbjct: 213 SPKHQNTTKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 272
Query: 902 VAIHTNIM 925
VAIHTNIM
Sbjct: 273 VAIHTNIM 280
>ref|NP_057876.1| beta-1-syntrophin [Mus musculus].
Length = 537
Score = 231 bits (590), Expect = 5e-61
Identities = 117/186 (62%), Positives = 145/186 (77%), Gaps = 1/186 (0%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V+V+KQE GGLGISIKGG+EN+MPILISKIF GLAADQ++AL +GDAILSVNG DLR
Sbjct: 110 RGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRD 169
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQALKRAGKEVLLEVK++RE TPY+KK S VS++ WE P+
Sbjct: 170 ATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIGWETPPPESPRLGGGSAEPL 229
Query: 725 XKHQNS-TKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 901
S +DRK IPLKMC+ RN+++ D ENR +E+HSPD+++T+ILR KD+ATA +WF
Sbjct: 230 SSQSFSFHRDRKSIPLKMCYVTRNMTLADPENRQLEIHSPDAKHTVILRSKDSATAQAWF 289
Query: 902 VAIHTN 919
AIH+N
Sbjct: 290 SAIHSN 295
>ref|NP_033254.2| alpha-1-syntrophin [Mus musculus].
Length = 499
Score = 170 bits (430), Expect = 2e-42
Identities = 94/186 (50%), Positives = 124/186 (66%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
RRV V K +AGGLGISIKGGREN+MPILISKIF GLAADQ+ AL +GDAILSVNG DL
Sbjct: 80 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 139
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQALK+ GKEV+LEVK+++EV+PY K + + + W+ +P
Sbjct: 140 ATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWD--SPPASPLQRQPSSPG 197
Query: 725 XKHQNSTKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFV 904
+ +N + K + LKM + +R + D E R +E+ + D ++ + LR KD A+A SW
Sbjct: 198 PQPRN-LSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAG 256
Query: 905 AIHTNI 922
AI I
Sbjct: 257 AIQAQI 262
>ref|NP_766539.2| gamma-2-syntrophin [Mus musculus].
Length = 539
Score = 97.1 bits (240), Expect = 2e-20
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V + +Q GGLG+SIKGG E+ +P++ISKIF AADQ+ L +GDA+L VNG ++
Sbjct: 72 RTVTLRRQPVGGLGLSIKGGAEHGVPVVISKIFKDQAADQTEMLFIGDAVLQVNGINVEN 131
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIK----KPSLVSDLPWEGAAP--------- 685
ATH++ V L+ AG +V + V+++RE ++K P SD ++P
Sbjct: 132 ATHEEVVHLLRNAGDDVTITVEYLREAPSFLKLPLGSPGPSSDHSSRASSPLFDSGLHLN 191
Query: 686 -----QXXXXXXXXXXXXXKHQNSTKDRKVIPLKMCFAAR-NLSMPDLENRLIELHSPDS 847
K++ D +PL M +R L + +E+ + D
Sbjct: 192 GHCSHTAPSSPSSPIANEPKYEKRWLDTLSVPLSMARISRYKAGTEKLRSSALEVLALDG 251
Query: 848 RNTLILRCKDTATAHSWFVAIHTNI 922
+T +L+ W +I TNI
Sbjct: 252 ASTGVLQFSTAQDCADWLRSISTNI 276
>ref|NP_081947.2| gamma-1-syntrophin [Mus musculus].
Length = 517
Score = 86.7 bits (213), Expect = 2e-17
Identities = 41/94 (43%), Positives = 62/94 (65%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V + +Q GG G+SIKGG E+ +P++ISKI A+ S L +GDAIL +NG ++R+
Sbjct: 56 RTVTIRRQTVGGFGLSIKGGAEHNIPVVISKISKEQRAELSGLLFIGDAILQINGINVRK 115
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKP 646
H++ VQ L+ AG+EV L V F++ ++K P
Sbjct: 116 CRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLP 149
>ref|NP_001186201.1| Golgi-associated PDZ and coiled-coil motif-containing protein
isoform a [Mus musculus].
Length = 463
Score = 80.9 bits (198), Expect = 1e-15
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 287 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 346
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 347 DTKHKEAVTILSQQRGEIEFEVVYV 371
>ref|NP_444417.2| Golgi-associated PDZ and coiled-coil motif-containing protein
isoform b [Mus musculus].
Length = 455
Score = 80.9 bits (198), Expect = 1e-15
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 279 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 338
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 339 DTKHKEAVTILSQQRGEIEFEVVYV 363
>ref|NP_001171250.1| disks large homolog 3 isoform 3 [Mus musculus].
Length = 512
Score = 67.4 bits (163), Expect = 1e-11
Identities = 42/96 (43%), Positives = 57/96 (59%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHD 556
++ + + GLG +I GG + I +S I G AD S LR GD ILSVNG +LR ATH+
Sbjct: 51 ILHKGSTGLGFNIVGGEDGE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 109
Query: 557 QAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDL 664
QA ALKRAG+ V + ++ E Y + S + DL
Sbjct: 110 QAAAALKRAGQSVTIVAQYRPE--EYSRFESKIHDL 143
>ref|NP_001171249.1| disks large homolog 3 isoform 2 [Mus musculus].
Length = 835
Score = 67.4 bits (163), Expect = 1e-11
Identities = 42/96 (43%), Positives = 57/96 (59%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHD 556
++ + + GLG +I GG + I +S I G AD S LR GD ILSVNG +LR ATH+
Sbjct: 406 ILHKGSTGLGFNIVGGEDGE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 464
Query: 557 QAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDL 664
QA ALKRAG+ V + ++ E Y + S + DL
Sbjct: 465 QAAAALKRAGQSVTIVAQYRPE--EYSRFESKIHDL 498
Score = 56.2 bits (134), Expect = 3e-08
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGREN-RMP----ILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
V+++ GLG SI GG +N +P I I+KI PG AA L + D +L VN D+
Sbjct: 151 VLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVS 210
Query: 542 QATHDQAVQALKRAGKEVLLEVK 610
+ H +AV+ALK AG V L V+
Sbjct: 211 EVVHSRAVEALKEAGPVVRLVVR 233
Score = 52.8 bits (125), Expect = 4e-07
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +2
Query: 398 GLGISIKGGRENRM-----PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQA 562
GLG SI GG N+ I I+KI G AA + L++GD +L+VN T+L+ H++A
Sbjct: 253 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 312
Query: 563 VQALKRAGKEVLLEV 607
V +LK V L+V
Sbjct: 313 VASLKNTSDMVYLKV 327
>ref|NP_058027.1| disks large homolog 3 isoform 1 [Mus musculus].
Length = 849
Score = 67.4 bits (163), Expect = 1e-11
Identities = 42/96 (43%), Positives = 57/96 (59%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHD 556
++ + + GLG +I GG + I +S I G AD S LR GD ILSVNG +LR ATH+
Sbjct: 406 ILHKGSTGLGFNIVGGEDGE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 464
Query: 557 QAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDL 664
QA ALKRAG+ V + ++ E Y + S + DL
Sbjct: 465 QAAAALKRAGQSVTIVAQYRPE--EYSRFESKIHDL 498
Score = 56.2 bits (134), Expect = 3e-08
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGREN-RMP----ILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
V+++ GLG SI GG +N +P I I+KI PG AA L + D +L VN D+
Sbjct: 151 VLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVS 210
Query: 542 QATHDQAVQALKRAGKEVLLEVK 610
+ H +AV+ALK AG V L V+
Sbjct: 211 EVVHSRAVEALKEAGPVVRLVVR 233
Score = 52.8 bits (125), Expect = 4e-07
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +2
Query: 398 GLGISIKGGRENRM-----PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQA 562
GLG SI GG N+ I I+KI G AA + L++GD +L+VN T+L+ H++A
Sbjct: 253 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 312
Query: 563 VQALKRAGKEVLLEV 607
V +LK V L+V
Sbjct: 313 VASLKNTSDMVYLKV 327
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 18,422,845
Number of extensions: 359420
Number of successful extensions: 1217
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 1168
Number of HSP's successfully gapped: 112
Length of query: 308
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 207
Effective length of database: 12,583,923
Effective search space: 2604872061
Effective search space used: 2604872061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013179
(925 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006741.1| beta-2-syntrophin [Homo sapiens]. 342 2e-94
Alignment gi|NP_066301.1| beta-1-syntrophin [Homo sapiens]. 231 9e-61
Alignment gi|NP_003089.1| alpha-1-syntrophin [Homo sapiens]. 169 3e-42
Alignment gi|NP_061841.2| gamma-2-syntrophin [Homo sapiens]. 95 1e-19
Alignment gi|NP_061840.1| gamma-1-syntrophin [Homo sapiens]. 86 4e-17
Alignment gi|NP_001017408.1| Golgi-associated PDZ and coiled-coil motif-c... 81 2e-15
Alignment gi|NP_065132.1| Golgi-associated PDZ and coiled-coil motif-cont... 81 2e-15
Alignment gi|NP_065781.1| disks large homolog 3 isoform b [Homo sapiens]. 67 2e-11
Alignment gi|NP_066943.2| disks large homolog 3 isoform a [Homo sapiens]. 67 2e-11
Alignment gi|NP_060832.1| protein lin-7 homolog C [Homo sapiens]. 66 4e-11
>ref|NP_006741.1| beta-2-syntrophin [Homo sapiens].
Length = 540
Score = 342 bits (878), Expect = 2e-94
Identities = 190/282 (67%), Positives = 191/282 (67%)
Frame = +2
Query: 80 WTRATKAGXXXXXXXXXXXXXXXXXSGESLSLTXXXXXXXXXXXXXXXXXXXXXXXXXXX 259
WTRATKAG SGESLSLT
Sbjct: 19 WTRATKAGLVELLLRERWVRVVAELSGESLSLTGDAAAAELEPALGPAAAAFNGLPNGGG 78
Query: 260 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRVRVVKQEAGGLGISIKGGRENRM 439
VRRVRVVKQEAGGLGISIKGGRENRM
Sbjct: 79 AGDSLPGSPSRGLGPPSPPAPPRGPAGEAGASPPVRRVRVVKQEAGGLGISIKGGRENRM 138
Query: 440 PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIR 619
PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIR
Sbjct: 139 PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIR 198
Query: 620 EVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXXXKHQNSTKDRKVIPLKMCFAARNLS 799
EVTPYIKKPSLVSDLPWEGAAPQ KHQNSTKDRK+IPLKMCFAARNLS
Sbjct: 199 EVTPYIKKPSLVSDLPWEGAAPQSPSFSGSEDSGSPKHQNSTKDRKIIPLKMCFAARNLS 258
Query: 800 MPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNIM 925
MPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNIM
Sbjct: 259 MPDLENRLIELHSPDSRNTLILRCKDTATAHSWFVAIHTNIM 300
>ref|NP_066301.1| beta-1-syntrophin [Homo sapiens].
Length = 538
Score = 231 bits (588), Expect = 9e-61
Identities = 116/187 (62%), Positives = 146/187 (78%), Gaps = 1/187 (0%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V+V+KQE GGLGISIKGG+EN+MPILISKIF GLAADQ++AL +GDAILSVNG DLR
Sbjct: 111 RGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRD 170
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQALKRAGKEVLLEVK++RE TPY+KK S VS++ WE P+
Sbjct: 171 ATHDEAVQALKRAGKEVLLEVKYMREATPYVKKGSPVSEIGWETPPPESPRLGGSTSDPP 230
Query: 725 XKHQNS-TKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWF 901
S +DRK IPLKMC+ R++++ D ENR +E+HSPD+++T+ILR KD+ATA +WF
Sbjct: 231 SSQSFSFHRDRKSIPLKMCYVTRSMALADPENRQLEIHSPDAKHTVILRSKDSATAQAWF 290
Query: 902 VAIHTNI 922
AIH+N+
Sbjct: 291 SAIHSNV 297
>ref|NP_003089.1| alpha-1-syntrophin [Homo sapiens].
Length = 505
Score = 169 bits (428), Expect = 3e-42
Identities = 93/186 (50%), Positives = 124/186 (66%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
RRV V K +AGGLGISIKGGREN+MPILISKIF GLAADQ+ AL +GDAILSVNG DL
Sbjct: 86 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 145
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDLPWEGAAPQXXXXXXXXXXXX 724
ATHD+AVQ LK+ GKEV+LEVK++++V+PY K + + + W+ +P
Sbjct: 146 ATHDEAVQVLKKTGKEVVLEVKYMKDVSPYFKNSTGGTSVGWD--SPPASPLQRQPSSPG 203
Query: 725 XKHQNSTKDRKVIPLKMCFAARNLSMPDLENRLIELHSPDSRNTLILRCKDTATAHSWFV 904
+N + + K + LKM + ++ + D E R +E+ S D ++TL LR KD A+A SW
Sbjct: 204 PTPRNFS-EAKHMSLKMAYVSKRCTPNDPEPRYLEICSADGQDTLFLRAKDEASARSWAT 262
Query: 905 AIHTNI 922
AI +
Sbjct: 263 AIQAQV 268
>ref|NP_061841.2| gamma-2-syntrophin [Homo sapiens].
Length = 539
Score = 94.7 bits (234), Expect = 1e-19
Identities = 45/94 (47%), Positives = 65/94 (69%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V + +Q GGLG+SIKGG E+ +P++ISKIF AADQ+ L +GDA+L VNG +
Sbjct: 72 RTVTLRRQPVGGLGLSIKGGSEHNVPVVISKIFEDQAADQTGMLFVGDAVLQVNGIHVEN 131
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKP 646
ATH++ V L+ AG EV + V+++RE ++K P
Sbjct: 132 ATHEEVVHLLRNAGDEVTITVEYLREAPAFLKLP 165
>ref|NP_061840.1| gamma-1-syntrophin [Homo sapiens].
Length = 517
Score = 86.3 bits (212), Expect = 4e-17
Identities = 40/94 (42%), Positives = 62/94 (65%)
Frame = +2
Query: 365 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 544
R V + +Q GG G+SIKGG E+ +P+++SKI A+ S L +GDAIL +NG ++R+
Sbjct: 56 RTVTIRRQTVGGFGLSIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRK 115
Query: 545 ATHDQAVQALKRAGKEVLLEVKFIREVTPYIKKP 646
H++ VQ L+ AG+EV L V F++ ++K P
Sbjct: 116 CRHEEVVQVLRNAGEEVTLTVSFLKRAPAFLKLP 149
>ref|NP_001017408.1| Golgi-associated PDZ and coiled-coil motif-containing protein
isoform b [Homo sapiens].
Length = 454
Score = 80.9 bits (198), Expect = 2e-15
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 278 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 337
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 338 DTKHKEAVTILSQQRGEIEFEVVYV 362
>ref|NP_065132.1| Golgi-associated PDZ and coiled-coil motif-containing protein
isoform a [Homo sapiens].
Length = 462
Score = 80.9 bits (198), Expect = 2e-15
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = +2
Query: 362 VRRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
+R+V ++K++ GLGISI GG+E+ +PILIS+I PG AD+ L +GDAIL+VNG +LR
Sbjct: 286 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 345
Query: 542 QATHDQAVQALKRAGKEVLLEVKFI 616
H +AV L + E+ EV ++
Sbjct: 346 DTKHKEAVTILSQQRGEIEFEVVYV 370
>ref|NP_065781.1| disks large homolog 3 isoform b [Homo sapiens].
Length = 512
Score = 67.4 bits (163), Expect = 2e-11
Identities = 42/96 (43%), Positives = 57/96 (59%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHD 556
++ + + GLG +I GG + I +S I G AD S LR GD ILSVNG +LR ATH+
Sbjct: 51 ILHKGSTGLGFNIVGGEDGE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 109
Query: 557 QAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDL 664
QA ALKRAG+ V + ++ E Y + S + DL
Sbjct: 110 QAAAALKRAGQSVTIVAQYRPE--EYSRFESKIHDL 143
>ref|NP_066943.2| disks large homolog 3 isoform a [Homo sapiens].
Length = 817
Score = 67.4 bits (163), Expect = 2e-11
Identities = 42/96 (43%), Positives = 57/96 (59%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHD 556
++ + + GLG +I GG + I +S I G AD S LR GD ILSVNG +LR ATH+
Sbjct: 388 ILHKGSTGLGFNIVGGEDGE-GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 446
Query: 557 QAVQALKRAGKEVLLEVKFIREVTPYIKKPSLVSDL 664
QA ALKRAG+ V + ++ E Y + S + DL
Sbjct: 447 QAAAALKRAGQSVTIVAQYRPE--EYSRFESKIHDL 480
Score = 56.2 bits (134), Expect = 4e-08
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Frame = +2
Query: 377 VVKQEAGGLGISIKGGREN-RMP----ILISKIFPGLAADQSRALRLGDAILSVNGTDLR 541
V+++ GLG SI GG +N +P I I+KI PG AA L + D +L VN D+
Sbjct: 133 VLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVS 192
Query: 542 QATHDQAVQALKRAGKEVLLEVK 610
+ H +AV+ALK AG V L V+
Sbjct: 193 EVVHSRAVEALKEAGPVVRLVVR 215
Score = 52.8 bits (125), Expect = 4e-07
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +2
Query: 398 GLGISIKGGRENRM-----PILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQA 562
GLG SI GG N+ I I+KI G AA + L++GD +L+VN T+L+ H++A
Sbjct: 235 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 294
Query: 563 VQALKRAGKEVLLEV 607
V +LK V L+V
Sbjct: 295 VASLKNTSDMVYLKV 309
>ref|NP_060832.1| protein lin-7 homolog C [Homo sapiens].
Length = 197
Score = 66.2 bits (160), Expect = 4e-11
Identities = 36/86 (41%), Positives = 52/86 (60%)
Frame = +2
Query: 368 RVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQA 547
RV + + GLG +I GG+E PI IS+I PG AD+ L+ GD +LSVNG +
Sbjct: 92 RVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRHGGLKRGDQLLSVNGVSVEGE 151
Query: 548 THDQAVQALKRAGKEVLLEVKFIREV 625
H++AV+ LK A +V L V++ +V
Sbjct: 152 HHEKAVELLKAAQGKVKLVVRYTPKV 177
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 21,767,033
Number of extensions: 424321
Number of successful extensions: 1475
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 1428
Number of HSP's successfully gapped: 108
Length of query: 308
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,934,836
Effective search space: 3076576216
Effective search space used: 3076576216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013179
(925 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1199 0.0
gb|GL893283.2| Sus scrofa unplaced genomic scaffold ChrUScaf1168 135 5e-29
>Sscrofa_Chr06
|| Length = 157765593
Score = 1199 bits (605), Expect = 0.0
Identities = 605/605 (100%)
Strand = Plus / Minus
Query: 1 gaagcgcctaggctgcctgactggaatgagggtagctgcgccgactgcggcggcgggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16722192 gaagcgcctaggctgcctgactggaatgagggtagctgcgccgactgcggcggcgggagc 16722133
Query: 61 ggggccggccatggcggtgtggacgcgggccaccaaagcggggctggtagaactgctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16722132 ggggccggccatggcggtgtggacgcgggccaccaaagcggggctggtagaactgctcct 16722073
Query: 121 tagggagcgctgggtccgggtggtggccgagctgagcggggagagcctgagcctgacggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16722072 tagggagcgctgggtccgggtggtggccgagctgagcggggagagcctgagcctgacggg 16722013
Query: 181 cgacgccgcggcggctgaaccagagccagctctagggcccgcggcggccgccttcaacgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16722012 cgacgccgcggcggctgaaccagagccagctctagggcccgcggcggccgccttcaacgg 16721953
Query: 241 cctcccgaacggcggcggcgcgggcgattcgctgcccgggagcccgagccgcggcctggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16721952 cctcccgaacggcggcggcgcgggcgattcgctgcccgggagcccgagccgcggcctggg 16721893
Query: 301 ccccccaagtccacccgcgccgccgcgaggcccggcgagtgaggcgggcgcgtcaccgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16721892 ccccccaagtccacccgcgccgccgcgaggcccggcgagtgaggcgggcgcgtcaccgcc 16721833
Query: 361 ggtgcgccgagtgcgggtggtgaagcaggaggcgggcggcctgggcatcagcatcaaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16721832 ggtgcgccgagtgcgggtggtgaagcaggaggcgggcggcctgggcatcagcatcaaggg 16721773
Query: 421 cggccgcgagaaccggatgccgatcctcatctccaagatcttcccgggactggcggccga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16721772 cggccgcgagaaccggatgccgatcctcatctccaagatcttcccgggactggcggccga 16721713
Query: 481 ccagagccgggcgctgcggctgggcgacgccatcctgtcggtgaacggcaccgacctgcg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16721712 ccagagccgggcgctgcggctgggcgacgccatcctgtcggtgaacggcaccgacctgcg 16721653
Query: 541 ccaggccacccacgaccaggccgttcaggcactgaagcgcgcgggcaaggaggtgctgct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16721652 ccaggccacccacgaccaggccgttcaggcactgaagcgcgcgggcaaggaggtgctgct 16721593
Query: 601 ggagg 605
|||||
Sbjct: 16721592 ggagg 16721588
Score = 426 bits (215), Expect = e-117
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 605 gtcaagttcatccgagaagtaacgccatatatcaagaagccatctttagtatcagacctg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16673252 gtcaagttcatccgagaagtaacgccatatatcaagaagccatctttagtatcagacctg 16673193
Query: 665 ccatgggaaggagcagctccccagtcaccaagcttcagtggcagtgaggactctggttct 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16673192 ccatgggaaggagcagctccccagtcaccaagcttcagtggcagtgaggactctggttct 16673133
Query: 725 ccaaaacaccagaacagcaccaaggacaggaaggtcattcctcttaaaatgtgctttgct 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16673132 ccaaaacaccagaacagcaccaaggacaggaaggtcattcctcttaaaatgtgctttgct 16673073
Query: 785 gctcgaaacttaagtatgccggacctggaaaacag 819
|||||||||||||||||||||||||||||||||||
Sbjct: 16673072 gctcgaaacttaagtatgccggacctggaaaacag 16673038
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 816 acagattaatagagctacattctcctgatagcaggaacacgttgatcctacgctgcaagg 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16659360 acagattaatagagctacattctcctgatagcaggaacacgttgatcctacgctgcaagg 16659301
Query: 876 atacagccacagcacactcctggttcgtagctatccacaccaacataatg 925
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16659300 atacagccacagcacactcctggttcgtagctatccacaccaacataatg 16659251
>gb|GL893283.2| Sus scrofa unplaced genomic scaffold ChrUScaf1168
Length = 167407
Score = 135 bits (68), Expect = 5e-29
Identities = 191/232 (82%), Gaps = 4/232 (1%)
Strand = Plus / Plus
Query: 376 ggtggtgaagcaggaggcgggcggcctgggcatcagcatcaagggcggccgcgagaaccg 435
|||| ||||||||||| |||||| |||||||||||||||||||| ||| ||||||
Sbjct: 13947 ggtgctgaagcaggagctgggcgggctgggcatcagcatcaaggggggcaaggagaacaa 14006
Query: 436 gatgccgatcctcatctccaagatcttcccgggactggcggccgaccagagccgggcgct 495
|||||| ||||||||| |||||||||| ||| |||||||| ||||||| || || ||
Sbjct: 14007 gatgcccatcctcatcagcaagatcttcaaggggctggcggcggaccagacccaagccct 14066
Query: 496 gcggctgggcgacgccatcctgtcggtgaacggcaccgacctgcgccaggccacccacga 555
| ||||||||||||||||||| |||||||| |||||||||| | |||||||||||
Sbjct: 14067 gtacgtgggcgacgccatcctgtctgtgaacggggccgacctgcgggacgccacccacga 14126
Query: 556 ccaggccgtt----caggcactgaagcgcgcgggcaaggaggtgctgctgga 603
| |||| || ||||| ||||||||||| |||||||| |||||||||||
Sbjct: 14127 cgaggcggtnggtgcaggcgctgaagcgcgctggcaaggaagtgctgctgga 14178
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,239,557
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 5
Length of query: 925
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 904
Effective length of database: 2,808,413,156
Effective search space: 2538805493024
Effective search space used: 2538805493024
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)