Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013180
(1036 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_788828.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 451 e-138
>ref|NP_788828.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial precursor [Bos taurus].
Length = 343
Score = 451 bits (1161), Expect(2) = e-138
Identities = 221/269 (82%), Positives = 237/269 (88%)
Frame = +1
Query: 139 LGAVAQRVGGIHTGAPCRLQYGPLAFILGERTTRKLTETSKVITVDGNICSGKGRLAREI 318
L V RVGGIHT +LQYGPLA+ILGE+ T+K+TE SK+ITVDGNICSGK +LA+EI
Sbjct: 6 LRLVPPRVGGIHTSVQFKLQYGPLAYILGEKATKKMTEKSKLITVDGNICSGKSKLAKEI 65
Query: 319 AEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYA 498
AEKLGL+HFPEAGIHY DSTTGDGKPL VQ SGNCSLEKFYDDPKSNDGNSYRLQ+WLYA
Sbjct: 66 AEKLGLKHFPEAGIHYVDSTTGDGKPLPVQFSGNCSLEKFYDDPKSNDGNSYRLQAWLYA 125
Query: 499 SRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTACE 678
SRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCV+HYN+VKKVT CE
Sbjct: 126 SRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVDHYNQVKKVTICE 185
Query: 679 YLXXXXXXXXXXXXXEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQ 858
YL E+QSRIQKKGNPHEMKIT+AYLQDIENAYK TFLPEMSEKCEVLQ
Sbjct: 186 YLPPHVVVYVDVPVPEVQSRIQKKGNPHEMKITSAYLQDIENAYKGTFLPEMSEKCEVLQ 245
Query: 859 YSAREAEDAEKVVEDIEYLKCDKGPWPDR 945
YSA EA+DAEKVVEDIEYLK DKGPW D+
Sbjct: 246 YSAWEAQDAEKVVEDIEYLKYDKGPWLDQ 274
Score = 59.3 bits (142), Expect(2) = e-138
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +3
Query: 924 QGPVAGQDDRTFHKLRMLVQNKLEVLNYTTIPVYLPE 1034
+GP Q+DR HKLRMLVQ+KLEVLNYT+IPV+LPE
Sbjct: 268 KGPWLDQNDRNLHKLRMLVQDKLEVLNYTSIPVFLPE 304
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,625,466
Number of extensions: 649825
Number of successful extensions: 2321
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2319
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013180
(1036 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850303.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 447 e-125
>ref|XP_850303.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha
subcomplex, 10, 42kDa precursor [Canis familiaris].
Length = 355
Score = 447 bits (1149), Expect = e-125
Identities = 215/264 (81%), Positives = 236/264 (89%)
Frame = +1
Query: 169 IHTGAPCRLQYGPLAFILGERTTRKLTETSKVITVDGNICSGKGRLAREIAEKLGLRHFP 348
IHT A C+LQYGPLA+ILGERTT+K TE SKVITVDGNICSGK ++A+EIAEKLGLRHFP
Sbjct: 28 IHTSAQCKLQYGPLAYILGERTTKKFTERSKVITVDGNICSGKSKVAKEIAEKLGLRHFP 87
Query: 349 EAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADAL 528
EAGIHYADSTTGDG+PLDV+ SG+CS+EKFYDDP+SNDGNSYRLQSWLYA+RLLQYADAL
Sbjct: 88 EAGIHYADSTTGDGRPLDVEFSGSCSMEKFYDDPRSNDGNSYRLQSWLYANRLLQYADAL 147
Query: 529 EHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTACEYLXXXXXXXX 708
EHLLSTGQGVVLERSI+SDFVFLEAMY Q FIRKQCV+HYNEVKKVT CEYL
Sbjct: 148 EHLLSTGQGVVLERSIFSDFVFLEAMYNQQFIRKQCVDHYNEVKKVTICEYLPPHVVIYI 207
Query: 709 XXXXXEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAEDAE 888
EIQS+IQKKG+PHEMK+T+AYLQDIENAYKKTFLPEMSEKCEVLQYSAREA+DAE
Sbjct: 208 DVPVPEIQSQIQKKGDPHEMKVTSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAQDAE 267
Query: 889 KVVEDIEYLKCDKGPWPDRTTAPF 960
KV+EDIEYLK DKGPW D+ F
Sbjct: 268 KVIEDIEYLKYDKGPWLDQDDRTF 291
Score = 67.8 bits (164), Expect = 2e-11
Identities = 31/37 (83%), Positives = 33/37 (89%)
Frame = +3
Query: 924 QGPVAGQDDRTFHKLRMLVQNKLEVLNYTTIPVYLPE 1034
+GP QDDRTFH LRMLVQNKLEVLNYTTIP+YLPE
Sbjct: 280 KGPWLDQDDRTFHHLRMLVQNKLEVLNYTTIPIYLPE 316
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,891,016
Number of extensions: 673072
Number of successful extensions: 2386
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2382
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013180
(1036 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133833.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 519 e-147
>ref|XP_003133833.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 10, mitochondrial-like [Sus scrofa].
Length = 357
Score = 519 bits (1336), Expect = e-147
Identities = 256/275 (93%), Positives = 258/275 (93%)
Frame = +1
Query: 136 GLGAVAQRVGGIHTGAPCRLQYGPLAFILGERTTRKLTETSKVITVDGNICSGKGRLARE 315
GLGAVAQRVGGIHTGAPCRLQYGPLAF+LGERTTRKLTETSKVITVDGNICSGKGRLARE
Sbjct: 19 GLGAVAQRVGGIHTGAPCRLQYGPLAFVLGERTTRKLTETSKVITVDGNICSGKGRLARE 78
Query: 316 IAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLY 495
IAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLY
Sbjct: 79 IAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLY 138
Query: 496 ASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTAC 675
ASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTAC
Sbjct: 139 ASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTAC 198
Query: 676 EYLXXXXXXXXXXXXXEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVL 855
EYL EIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVL
Sbjct: 199 EYLPPHVVVYVDVPVPEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVL 258
Query: 856 QYSAREAEDAEKVVEDIEYLKCDKGPWPDRTTAPF 960
QYSAREAEDAEKVVEDIEYLKCDKGPWPD+ F
Sbjct: 259 QYSAREAEDAEKVVEDIEYLKCDKGPWPDQDDRTF 293
Score = 69.3 bits (168), Expect = 3e-12
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = +3
Query: 924 QGPVAGQDDRTFHKLRMLVQNKLEVLNYTTIPVYLPE 1034
+GP QDDRTFH+LRMLVQNKLEVLNYTTIPVYLPE
Sbjct: 282 KGPWPDQDDRTFHRLRMLVQNKLEVLNYTTIPVYLPE 318
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,097,102
Number of extensions: 419492
Number of successful extensions: 1544
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1542
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013180
(1036 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077159.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 414 e-127
>ref|NP_077159.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial precursor [Mus musculus].
Length = 355
Score = 414 bits (1063), Expect(2) = e-127
Identities = 199/267 (74%), Positives = 230/267 (86%)
Frame = +1
Query: 136 GLGAVAQRVGGIHTGAPCRLQYGPLAFILGERTTRKLTETSKVITVDGNICSGKGRLARE 315
GL A AQRVG IHT C+L+YG LA ILG++TT+KL E S+VITVDGNICSGK +LA+E
Sbjct: 17 GLAAGAQRVGRIHTSVHCKLRYGLLAAILGDKTTKKLHEYSRVITVDGNICSGKNKLAKE 76
Query: 316 IAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLY 495
IA++LG++H+PEAGI Y+ +TTGDG+PLD++ SG+CSLEKFYDDPKSNDGNSYRLQSWLY
Sbjct: 77 IAQQLGMKHYPEAGIQYSSTTTGDGRPLDIEFSGSCSLEKFYDDPKSNDGNSYRLQSWLY 136
Query: 496 ASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTAC 675
ASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMY QG+IRKQCV+HYNE+K++T
Sbjct: 137 ASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGYIRKQCVDHYNEIKRLTLP 196
Query: 676 EYLXXXXXXXXXXXXXEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVL 855
EYL E+QSRIQKKG+PHEMK+T+AYLQDIENAYKKTFLP+MSE CEVL
Sbjct: 197 EYLPPHAVIYIDVPVPEVQSRIQKKGDPHEMKVTSAYLQDIENAYKKTFLPKMSEMCEVL 256
Query: 856 QYSAREAEDAEKVVEDIEYLKCDKGPW 936
Y + EAED KVVEDIEYLK +KGPW
Sbjct: 257 VYDSWEAEDPTKVVEDIEYLKYNKGPW 283
Score = 60.5 bits (145), Expect(2) = e-127
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = +3
Query: 924 QGPVAGQDDRTFHKLRMLVQNKLEVLNYTTIPVYLPE 1034
+GP QDD TFH LRMLVQ+K EVLNYTTIPVYLPE
Sbjct: 280 KGPWLKQDDWTFHYLRMLVQDKTEVLNYTTIPVYLPE 316
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,642,319
Number of extensions: 549989
Number of successful extensions: 1988
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1986
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013180
(1036 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004535.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 424 e-128
>ref|NP_004535.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial precursor [Homo sapiens].
Length = 355
Score = 424 bits (1091), Expect(2) = e-128
Identities = 202/266 (75%), Positives = 231/266 (86%)
Frame = +1
Query: 139 LGAVAQRVGGIHTGAPCRLQYGPLAFILGERTTRKLTETSKVITVDGNICSGKGRLAREI 318
+ A AQRV GIH+ C+L+YG F+LG++ +++LTE S+VITVDGNIC+GKG+LA+EI
Sbjct: 18 VAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEI 77
Query: 319 AEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYA 498
AEKLG +HFPEAGIHY DSTTGDGKPL +GNCSLEKFYDDP+SNDGNSYRLQSWLY+
Sbjct: 78 AEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRLQSWLYS 137
Query: 499 SRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTACE 678
SRLLQY+DALEHLL+TGQGVVLERSI+SDFVFLEAMY QGFIRKQCV+HYNEVK VT C+
Sbjct: 138 SRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIRKQCVDHYNEVKSVTICD 197
Query: 679 YLXXXXXXXXXXXXXEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQ 858
YL E+Q RIQKKG+PHEMKIT+AYLQDIENAYKKTFLPEMSEKCEVLQ
Sbjct: 198 YLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENAYKKTFLPEMSEKCEVLQ 257
Query: 859 YSAREAEDAEKVVEDIEYLKCDKGPW 936
YSAREA+D++KVVEDIEYLK DKGPW
Sbjct: 258 YSAREAQDSKKVVEDIEYLKFDKGPW 283
Score = 53.1 bits (126), Expect(2) = e-128
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +3
Query: 924 QGPVAGQDDRTFHKLRMLVQNKLEVLNYTTIPVYLPE 1034
+GP QD+RT + LR+LVQ+K EVLNYT+IP++LPE
Sbjct: 280 KGPWLKQDNRTLYHLRLLVQDKFEVLNYTSIPIFLPE 316
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,288,593
Number of extensions: 658594
Number of successful extensions: 2303
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2302
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013180
(1036 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 434 e-119
>Sscrofa_Chr15
|| Length = 157681621
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Minus
Query: 330 aggcctgaggcacttccccgaggccgggatccactacgccgacagcaccaccggcgacgg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153822106 aggcctgaggcacttccccgaggccgggatccactacgccgacagcaccaccggcgacgg 153822047
Query: 390 gaagcccctggacgtacagctcagcggcaactgcagtttggagaagttctatgacgaccc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153822046 gaagcccctggacgtacagctcagcggcaactgcagtttggagaagttctatgacgaccc 153821987
Query: 450 gaaaagtaacgacggcaacagctaccgcctgcagtcctggctgtacgccagccgcctcct 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153821986 gaaaagtaacgacggcaacagctaccgcctgcagtcctggctgtacgccagccgcctcct 153821927
Query: 510 gcagtacgcggacgccctggagcacctgctgagcacagg 548
|||||||||||||||||||||||||||||||||||||||
Sbjct: 153821926 gcagtacgcggacgccctggagcacctgctgagcacagg 153821888
Score = 331 bits (167), Expect = 4e-88
Identities = 170/171 (99%)
Strand = Plus / Minus
Query: 162 gggcggaatccacacgggcgccccgtgcaggctgcagtatggccctctggccttcatcct 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 153823163 gggcggaatccacacgggcgccccgtgcaggctgcagtatggccctctggccttcgtcct 153823104
Query: 222 tggggaaagaacgaccaggaagctgacggaaaccagcaaagtgataactgtggacggcaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153823103 tggggaaagaacgaccaggaagctgacggaaaccagcaaagtgataactgtggacggcaa 153823044
Query: 282 catatgttccggaaagggcaggctggcgagagaaatagccgagaagctagg 332
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153823043 catatgttccggaaagggcaggctggcgagagaaatagccgagaagctagg 153822993
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1 cgacggcgcgacggccgcgggagaggaccccggcgcgaccgcgtcccctcgggtccttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154133140 cgacggcgcgacggccgcgggagaggaccccggcgcgaccgcgtcccctcgggtccttga 154133199
Query: 61 gccggtgcagaccgcggagccatggccttgaggctgctgagactggcccccgcgtccgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154133200 gccggtgcagaccgcggagccatggccttgaggctgctgagactggcccccgcgtccgcg 154133259
Query: 121 tccgcggtcccgcggggcctcggggcggtcgcccagcgcgtgg 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154133260 tccgcggtcccgcggggcctcggggcggtcgcccagcgcgtgg 154133302
Score = 315 bits (159), Expect = 3e-83
Identities = 162/163 (99%)
Strand = Plus / Minus
Query: 1 cgacggcgcgacggccgcgggagaggaccccggcgcgaccgcgtcccctcgggtccttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153825378 cgacggcgcgacggccgcgggagaggaccccggcgcgaccgcgtcccctcgggtccttga 153825319
Query: 61 gccggtgcagaccgcggagccatggccttgaggctgctgagactggcccccgcgtccgcg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153825318 gccggcgcagaccgcggagccatggccttgaggctgctgagactggcccccgcgtccgcg 153825259
Query: 121 tccgcggtcccgcggggcctcggggcggtcgcccagcgcgtgg 163
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153825258 tccgcggtcccgcggggcctcggggcggtcgcccagcgcgtgg 153825216
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 635 gcgtggagcactacaacgaggtgaagaaggtcaccgcctgcgagtacctgcccccgcacg 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153819511 gcgtggagcactacaacgaggtgaagaaggtcaccgcctgcgagtacctgcccccgcacg 153819452
Query: 695 tggtcgtctacgtggacgtgcccgtccccgagatccagagccgcatccagaagaagggca 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153819451 tggtcgtctacgtggacgtgcccgtccccgagatccagagccgcatccagaagaagggca 153819392
Query: 755 ac 756
||
Sbjct: 153819391 ac 153819390
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 544 acaggacaaggcgtggtgctggagcgctccatctacagtgactttgtgttcttggaggcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153820693 acaggacaaggcgtggtgctggagcgctccatctacagtgactttgtgttcttggaggcc 153820634
Query: 604 atgtacagacagggcttcatccggaagcagtg 635
||||||||||||||||||||||||||||||||
Sbjct: 153820633 atgtacagacagggcttcatccggaagcagtg 153820602
Score = 151 bits (76), Expect = 9e-34
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 757 ccgcacgagatgaagatcaccgccgcctacctgcaggacatcgagaacgcctacaagaag 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153817738 ccgcacgagatgaagatcaccgccgcctacctgcaggacatcgagaacgcctacaagaag 153817679
Query: 817 accttcctgcccgagatgag 836
||||||||||| ||||||||
Sbjct: 153817678 accttcctgcctgagatgag 153817659
Score = 145 bits (73), Expect = 6e-32
Identities = 86/89 (96%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 890 aggtggtcgaggacatcgagtacctgaagtgcgacaagggcccgtggccgga-caggacg 948
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 153814226 aggtggtcgaggacatcgagtacctgaagtgcgacaagggcccgtggccggaccaggacg 153814167
Query: 949 accgcacctttcacaagctgaggatgctg 977
|||||||||| |||| |||||||||||||
Sbjct: 153814166 accgcaccttccacaggctgaggatgctg 153814138
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 977 ggttcagaataagctggaggtgctgaattacacgaccattcccgtctatctcccggaaat 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153807674 ggttcagaataagctggaggtgctgaattacacgaccattcccgtctatctcccggaaat 153807615
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 835 agcgaaaaatgtgaggtgttacagtacagtgcgagggaagccgaagatgcagaaaaggt 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153816242 agcgaaaaatgtgaggtgttacagtacagtgcgagggaagccgaagatgcagaaaaggt 153816184
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,493,040
Number of extensions: 79
Number of successful extensions: 79
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 10
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)