Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013183
(1037 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860319.1| PREDICTED: similar to CG2616-PA isoform 5 [Cani... 371 e-112
Alignment gi|XP_534227.2| PREDICTED: similar to CG2616-PA isoform 1 [Cani... 371 e-112
Alignment gi|XP_860280.1| PREDICTED: similar to CG2616-PA isoform 4 [Cani... 371 e-112
Alignment gi|XP_860242.1| PREDICTED: similar to CG2616-PA isoform 3 [Cani... 371 e-110
Alignment gi|XP_547978.2| PREDICTED: similar to Mitchondrial carnitine/ac... 74 3e-13
Alignment gi|XP_544307.1| PREDICTED: similar to Mitochondrial ornithine t... 74 3e-13
Alignment gi|XP_543118.1| PREDICTED: similar to Mitochondrial ornithine t... 73 4e-13
Alignment gi|XP_851341.1| PREDICTED: similar to solute carrier family 25,... 72 7e-13
Alignment gi|XP_532450.2| PREDICTED: similar to mitochondrial carrier fam... 72 1e-12
Alignment gi|XP_856457.1| PREDICTED: similar to Mitochondrial carrier pro... 72 1e-12
>ref|XP_860319.1| PREDICTED: similar to CG2616-PA isoform 5 [Canis familiaris].
Length = 304
Score = 371 bits (952), Expect(2) = e-112
Identities = 182/205 (88%), Positives = 196/205 (95%)
Frame = +1
Query: 340 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 519
M+QKSRPALLQPQDVGD+VETLML PV+KAFLCGSISGT S LLFQPLDLLKTRLQT+QP
Sbjct: 1 MLQKSRPALLQPQDVGDKVETLMLHPVIKAFLCGSISGTCSTLLFQPLDLLKTRLQTLQP 60
Query: 520 SAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 699
SAHGS R+GMLALLL VVRTES+LGLWKG+SPSIVRCVPG+GIYFG+LYSLKQYFLRGHP
Sbjct: 61 SAHGSGRIGMLALLLKVVRTESILGLWKGISPSIVRCVPGIGIYFGTLYSLKQYFLRGHP 120
Query: 700 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 879
PTALESVILGVGSRS+AGVCMSPITVIKTRYESGRYGYESIY+ALRSIY SEG+RGLFSG
Sbjct: 121 PTALESVILGVGSRSVAGVCMSPITVIKTRYESGRYGYESIYTALRSIYRSEGHRGLFSG 180
Query: 880 LTATLLRDAPFSGIYLMFYTRPKTL 954
LTATLLRDAPFSGIYLMFY + K +
Sbjct: 181 LTATLLRDAPFSGIYLMFYNQTKNI 205
Score = 52.8 bits (125), Expect(2) = e-112
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +3
Query: 936 HQTKNIVLHDQLDAVLVPVANFSCGIFAG 1022
+QTKNI+ HDQLDA L+PV NFSCGIFAG
Sbjct: 200 NQTKNIMTHDQLDANLIPVVNFSCGIFAG 228
>ref|XP_534227.2| PREDICTED: similar to CG2616-PA isoform 1 [Canis familiaris].
Length = 304
Score = 371 bits (952), Expect(2) = e-112
Identities = 182/205 (88%), Positives = 196/205 (95%)
Frame = +1
Query: 340 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 519
M+QKSRPALLQPQDVGD+VETLML PV+KAFLCGSISGT S LLFQPLDLLKTRLQT+QP
Sbjct: 1 MLQKSRPALLQPQDVGDKVETLMLHPVIKAFLCGSISGTCSTLLFQPLDLLKTRLQTLQP 60
Query: 520 SAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 699
SAHGS R+GMLALLL VVRTES+LGLWKG+SPSIVRCVPG+GIYFG+LYSLKQYFLRGHP
Sbjct: 61 SAHGSGRIGMLALLLKVVRTESILGLWKGISPSIVRCVPGIGIYFGTLYSLKQYFLRGHP 120
Query: 700 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 879
PTALESVILGVGSRS+AGVCMSPITVIKTRYESGRYGYESIY+ALRSIY SEG+RGLFSG
Sbjct: 121 PTALESVILGVGSRSVAGVCMSPITVIKTRYESGRYGYESIYTALRSIYRSEGHRGLFSG 180
Query: 880 LTATLLRDAPFSGIYLMFYTRPKTL 954
LTATLLRDAPFSGIYLMFY + K +
Sbjct: 181 LTATLLRDAPFSGIYLMFYNQTKNI 205
Score = 52.8 bits (125), Expect(2) = e-112
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +3
Query: 936 HQTKNIVLHDQLDAVLVPVANFSCGIFAG 1022
+QTKNI+ HDQLDA L+PV NFSCGIFAG
Sbjct: 200 NQTKNIMTHDQLDANLIPVVNFSCGIFAG 228
>ref|XP_860280.1| PREDICTED: similar to CG2616-PA isoform 4 [Canis familiaris].
Length = 301
Score = 371 bits (952), Expect(2) = e-112
Identities = 182/205 (88%), Positives = 196/205 (95%)
Frame = +1
Query: 340 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 519
M+QKSRPALLQPQDVGD+VETLML PV+KAFLCGSISGT S LLFQPLDLLKTRLQT+QP
Sbjct: 1 MLQKSRPALLQPQDVGDKVETLMLHPVIKAFLCGSISGTCSTLLFQPLDLLKTRLQTLQP 60
Query: 520 SAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 699
SAHGS R+GMLALLL VVRTES+LGLWKG+SPSIVRCVPG+GIYFG+LYSLKQYFLRGHP
Sbjct: 61 SAHGSGRIGMLALLLKVVRTESILGLWKGISPSIVRCVPGIGIYFGTLYSLKQYFLRGHP 120
Query: 700 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 879
PTALESVILGVGSRS+AGVCMSPITVIKTRYESGRYGYESIY+ALRSIY SEG+RGLFSG
Sbjct: 121 PTALESVILGVGSRSVAGVCMSPITVIKTRYESGRYGYESIYTALRSIYRSEGHRGLFSG 180
Query: 880 LTATLLRDAPFSGIYLMFYTRPKTL 954
LTATLLRDAPFSGIYLMFY + K +
Sbjct: 181 LTATLLRDAPFSGIYLMFYNQTKNI 205
Score = 52.8 bits (125), Expect(2) = e-112
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +3
Query: 936 HQTKNIVLHDQLDAVLVPVANFSCGIFAG 1022
+QTKNI+ HDQLDA L+PV NFSCGIFAG
Sbjct: 200 NQTKNIMTHDQLDANLIPVVNFSCGIFAG 228
>ref|XP_860242.1| PREDICTED: similar to CG2616-PA isoform 3 [Canis familiaris].
Length = 311
Score = 371 bits (952), Expect(2) = e-110
Identities = 182/205 (88%), Positives = 196/205 (95%)
Frame = +1
Query: 340 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 519
M+QKSRPALLQPQDVGD+VETLML PV+KAFLCGSISGT S LLFQPLDLLKTRLQT+QP
Sbjct: 1 MLQKSRPALLQPQDVGDKVETLMLHPVIKAFLCGSISGTCSTLLFQPLDLLKTRLQTLQP 60
Query: 520 SAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 699
SAHGS R+GMLALLL VVRTES+LGLWKG+SPSIVRCVPG+GIYFG+LYSLKQYFLRGHP
Sbjct: 61 SAHGSGRIGMLALLLKVVRTESILGLWKGISPSIVRCVPGIGIYFGTLYSLKQYFLRGHP 120
Query: 700 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 879
PTALESVILGVGSRS+AGVCMSPITVIKTRYESGRYGYESIY+ALRSIY SEG+RGLFSG
Sbjct: 121 PTALESVILGVGSRSVAGVCMSPITVIKTRYESGRYGYESIYTALRSIYRSEGHRGLFSG 180
Query: 880 LTATLLRDAPFSGIYLMFYTRPKTL 954
LTATLLRDAPFSGIYLMFY + K +
Sbjct: 181 LTATLLRDAPFSGIYLMFYNQTKNI 205
Score = 45.8 bits (107), Expect(2) = e-110
Identities = 23/36 (63%), Positives = 26/36 (72%), Gaps = 7/36 (19%)
Frame = +3
Query: 936 HQTKNIVLH-------DQLDAVLVPVANFSCGIFAG 1022
+QTKNI+ H DQLDA L+PV NFSCGIFAG
Sbjct: 200 NQTKNIMTHGMDKRRSDQLDANLIPVVNFSCGIFAG 235
>ref|XP_547978.2| PREDICTED: similar to Mitchondrial carnitine/acylcarnitine carrier
protein CACL (CACT-like) [Canis familiaris].
Length = 519
Score = 73.6 bits (179), Expect = 3e-13
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Frame = +1
Query: 385 GDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLL 564
G+ + L + F+ G+ +G ++ P++L KTRLQ A + R G L L
Sbjct: 225 GNTLRALGRDSPLNQFVAGAAAGAIQCVICCPMELAKTRLQLQDAGAARAYR-GSLHCLA 283
Query: 565 NVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP--PTALESVILGVGS 738
++ R E L G+ +GM+ +++R P G+YF S Y + L P P + ++L G+
Sbjct: 284 HIYRREGLRGVNRGMASTLLRETPSFGVYFLS-YDVLTRALGCEPGAPLLVPKLLLAGGT 342
Query: 739 RSIAG-VCMSPITVIKTRYES----GRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRD 903
I + P+ V+K+R ++ G Y I R Y +EG+R GL +TLLR
Sbjct: 343 SGILSWLSTYPVDVVKSRLQADGLRGAPRYGGIADCARQSYRAEGWRVFTRGLASTLLRA 402
Query: 904 AP 909
P
Sbjct: 403 FP 404
Score = 67.8 bits (164), Expect = 2e-11
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 4/166 (2%)
Frame = +1
Query: 451 GTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRC 630
G L+ P D +K RLQ SA + G L ++++ ES+LGL+KG+ ++
Sbjct: 156 GVAGVLVGHPFDTVKVRLQV--QSAEKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLLGL 213
Query: 631 VPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYG 810
+ FG + + R P L + G + +I V P+ + KTR + G
Sbjct: 214 TFINALVFGVQGNTLRALGRDSP---LNQFVAGAAAGAIQCVICCPMELAKTRLQLQDAG 270
Query: 811 ----YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
Y L IY EG RG+ G+ +TLLR+ P G+Y + Y
Sbjct: 271 AARAYRGSLHCLAHIYRREGLRGVNRGMASTLLRETPSFGVYFLSY 316
>ref|XP_544307.1| PREDICTED: similar to Mitochondrial ornithine transporter 1 (Solute
carrier family 25, member 15) [Canis familiaris].
Length = 301
Score = 73.6 bits (179), Expect = 3e-13
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 12/184 (6%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSR----RVGMLALLLNVVRTESL 588
++A GS + F+AL P +L+K RLQT+ + + + +++ +++R E
Sbjct: 107 LQAAAAGSFASAFAALALCPTELVKCRLQTMYEMEMSGKIAKSQNTIWSVVKSILRKEGP 166
Query: 589 LGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCM-- 762
LG + G+S ++++ VPG +F + +F G L V L + S IAG+C+
Sbjct: 167 LGFYHGLSSTLLQEVPGYFFFFCGYELSRSFFASGRSKDELGPVPLML-SGGIAGICLWL 225
Query: 763 --SPITVIKTRYE----SGRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIY 924
P+ IK+R + SG+ L S+ +EG L+SGLTAT++R P +G
Sbjct: 226 VIYPVDCIKSRIQVLSISGKQA--GFLGTLLSVVKNEGTAALYSGLTATMIRAFPANGSL 283
Query: 925 LMFY 936
+ Y
Sbjct: 284 FLAY 287
Score = 54.7 bits (130), Expect = 1e-07
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Frame = +1
Query: 415 PVVKAFL---CGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTES 585
P V+A + G++ GT L QP D +K ++QT P + G++ L
Sbjct: 5 PAVQAAIDLTAGAVGGTACVLTGQPFDTVKVKMQTF-PGLY----KGLVDCCLKTYSQVG 59
Query: 586 LLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLR-------GHPPTALESVILGVGSRS 744
G +KG P+++ V + F Y Q +R T L++ G + +
Sbjct: 60 FRGFYKGTGPALMAYVAENSVLF-MCYGFCQQLVRKVVGLDEQEKLTDLQAAAAGSFASA 118
Query: 745 IAGVCMSPITVIKTRYE-------SGRY--GYESIYSALRSIYHSEGYRGLFSGLTATLL 897
A + + P ++K R + SG+ +I+S ++SI EG G + GL++TLL
Sbjct: 119 FAALALCPTELVKCRLQTMYEMEMSGKIAKSQNTIWSVVKSILRKEGPLGFYHGLSSTLL 178
Query: 898 RDAPFSGIYLMF 933
++ P G + F
Sbjct: 179 QEVP--GYFFFF 188
>ref|XP_543118.1| PREDICTED: similar to Mitochondrial ornithine transporter 1 (Solute
carrier family 25, member 15) [Canis familiaris].
Length = 301
Score = 73.2 bits (178), Expect = 4e-13
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 12/184 (6%)
Frame = +1
Query: 439 GSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRT----ESLLGLWKG 606
GS + F+AL+ P +L+K RLQT+ A + + +VV+T + LG + G
Sbjct: 113 GSFASAFAALVLCPTELVKCRLQTMHEMASSGKIANSQNTVWSVVKTVLRKDGPLGFYHG 172
Query: 607 MSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCM----SPIT 774
+S +++R VPG +FG + +F G L V L + S + GVC+ P+
Sbjct: 173 LSSTLLREVPGYFFFFGGYELSRSFFASGKSKDELGPVPLML-SGGVGGVCLWLAVYPVD 231
Query: 775 VIKTRYE----SGRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFYTR 942
+K+R + SG+ SI +EG L+SGL T++R P +G + Y
Sbjct: 232 CVKSRIQVLSMSGKQA--GFIGTFISIVKNEGITALYSGLKPTMIRAFPANGALFLAYEY 289
Query: 943 PKTL 954
+ L
Sbjct: 290 SRKL 293
Score = 50.8 bits (120), Expect = 2e-06
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Frame = +1
Query: 415 PVVKAFL---CGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTES 585
P ++A + G+ GT L QP D LK ++QT P + G+ L
Sbjct: 5 PAIQAAIDLTAGAAGGTACVLTGQPFDTLKVKMQTF-PDLYR----GLTDCCLKTYSQVG 59
Query: 586 LLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLR---GHPPTA----LESVILGVGSRS 744
G +KG SP+++ + + F Y Q +R G A L++ G + +
Sbjct: 60 FRGFYKGTSPALIANIAENSVLF-MCYGFCQQVVRKVVGLEKQAKLSDLQNAAAGSFASA 118
Query: 745 IAGVCMSPITVIKTRYE-------SGRY--GYESIYSALRSIYHSEGYRGLFSGLTATLL 897
A + + P ++K R + SG+ +++S ++++ +G G + GL++TLL
Sbjct: 119 FAALVLCPTELVKCRLQTMHEMASSGKIANSQNTVWSVVKTVLRKDGPLGFYHGLSSTLL 178
Query: 898 RDAPFSGIYLMF 933
R+ P G + F
Sbjct: 179 REVP--GYFFFF 188
>ref|XP_851341.1| PREDICTED: similar to solute carrier family 25, member 28 [Canis
familiaris].
Length = 536
Score = 72.4 bits (176), Expect = 7e-13
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 4/198 (2%)
Frame = +1
Query: 355 RPALLQPQDVGDRVETLMLQPVVKAFL-CGSISGTFSALLFQPLDLLKTRLQTVQPSAHG 531
RP + Q D G E L V + G+++G + P+D +KTR+Q++QP
Sbjct: 222 RPPVRQDPDSGPDYEALPAGATVTTHMVAGAVAGILEHCVMYPIDCVKTRMQSLQPDP-A 280
Query: 532 SRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTAL 711
+R +L L ++RTE L +G++ + P +YF LK+ P
Sbjct: 281 ARYRNVLEALWRIIRTEGLWRPMRGLNVTATGAGPAHALYFACYEKLKKTLSDVIHPGGN 340
Query: 712 ESVILGVG---SRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGL 882
+ G + + M+P V+K R + Y + +R+++ +EG +
Sbjct: 341 SHIANGAAGCVATLLHDAAMNPAEVVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRSY 400
Query: 883 TATLLRDAPFSGIYLMFY 936
T L + PF I+ M Y
Sbjct: 401 TTQLTMNVPFQAIHFMTY 418
>ref|XP_532450.2| PREDICTED: similar to mitochondrial carrier family protein [Canis
familiaris].
Length = 338
Score = 71.6 bits (174), Expect = 1e-12
Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 33/224 (14%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQ-PSAHGS--------------------- 534
V+ L ++L+ PLD++K RLQ P G
Sbjct: 16 VQQMLASCTGAILTSLMVTPLDVVKIRLQAQNNPFPKGKCFVYSNGLMDHLCVCEEEGNK 75
Query: 535 -------RRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLR- 690
R G L +VR E + LW G+ P++V VP IYF + Y LR
Sbjct: 76 AWYKKPGRFQGTLDAFFKIVRNEGIKSLWSGLPPTLVMAVPATVIYF-TCYDQLSALLRS 134
Query: 691 --GHPPTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYR 864
G + + +I G+ +R A +SP+ +I+T+ +S ++ + ++ + +G+
Sbjct: 135 KLGENESRIP-IIAGIVARFGAVTVISPLELIRTKMQSKKFSSKELHRFVSKKVSEDGWI 193
Query: 865 GLFSGLTATLLRDAPFSGIYLMFY-TRPKTLCSMTSWMQSLYLL 993
L+ G T+LRD PFS +Y Y K LC+ + + +++
Sbjct: 194 SLWKGWAPTILRDVPFSAMYWYNYEVLKKWLCAKSGLYEPTFMI 237
Score = 70.5 bits (171), Expect = 3e-12
Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Frame = +1
Query: 433 LCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMS 612
+ G ++ + + PL+L++T++Q+ + S+ R + V + + LWKG +
Sbjct: 146 IAGIVARFGAVTVISPLELIRTKMQSKKFSSKELHR-----FVSKKVSEDGWISLWKGWA 200
Query: 613 PSIVRCVPGVGIYFGSLYSLKQYFLRG---HPPTALESVILGVGSRSIAGVCMSPITVIK 783
P+I+R VP +Y+ + LK++ + PT + + G S SIA V P V+K
Sbjct: 201 PTILRDVPFSAMYWYNYEVLKKWLCAKSGLYEPTFMINFTSGALSGSIAAVATLPFDVVK 260
Query: 784 TRYESGRYGYE----------SIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMF 933
T+ ++ + YE S ++ +++I G+ GLF+GL L++ AP I +
Sbjct: 261 TQKQTQLWIYESHKISMPLHMSTWAIMKNIVAKNGFAGLFTGLIPRLIKIAPACAIMIST 320
Query: 934 YTRPKT 951
Y KT
Sbjct: 321 YEFGKT 326
>ref|XP_856457.1| PREDICTED: similar to Mitochondrial carrier protein CGI-69 isoform 2
[Canis familiaris].
Length = 345
Score = 71.6 bits (174), Expect = 1e-12
Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 7/236 (2%)
Frame = +1
Query: 343 IQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLF-----QPLDLLKTRLQ 507
+Q RP++ R+ +L P K L S+ T LL+ +PL L +
Sbjct: 25 LQSQRPSMASELMPPSRLWSL---PYAK--LPSSLQSTGKCLLYCNGVLEPLYLCPNGAR 79
Query: 508 TVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFL 687
+R G + + +VR E LW G+ ++V VP IYF + LK FL
Sbjct: 80 CATWFQDPTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKT-FL 138
Query: 688 RGHPPTA--LESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGY 861
G T+ ++ G +R +SP+ +++T+ ++ Y + + +R+ G+
Sbjct: 139 CGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQHVSYRELGACVRAAVAQGGW 198
Query: 862 RGLFSGLTATLLRDAPFSGIYLMFYTRPKTLCSMTSWMQSLYLLQTSAVGYLLDSG 1029
R L+ G T LRD PFS +Y Y K SW+ L ++VG +G
Sbjct: 199 RSLWLGWGPTALRDVPFSALYWFNYELVK------SWLSGLRPKDQTSVGMSFVAG 248
Score = 55.5 bits (132), Expect = 8e-08
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 28/200 (14%)
Frame = +1
Query: 421 VKAFLCGS----------ISGTFSAL----LFQPLDLLKTRLQTVQPSAHGSRRVGMLAL 558
+K FLCG ++G + L + PL+L++T+LQ S R +G A
Sbjct: 134 LKTFLCGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQHVSY---RELG--AC 188
Query: 559 LLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESV----IL 726
+ V LW G P+ +R VP +Y+ + Y L + +L G P SV +
Sbjct: 189 VRAAVAQGGWRSLWLGWGPTALRDVPFSALYWFN-YELVKSWLSGLRPKDQTSVGMSFVA 247
Query: 727 GVGSRSIAGVCMSPITVIKTRYESGRYGYESI----------YSALRSIYHSEGYRGLFS 876
G S ++A + P V+KT+ + E++ + LR I G RGLF+
Sbjct: 248 GGISGTVAAILTLPFDVVKTQRQVALGAVEAVRVTPPRADSTWLLLRRIRAESGTRGLFA 307
Query: 877 GLTATLLRDAPFSGIYLMFY 936
G +++ AP I + Y
Sbjct: 308 GFLPRIIKAAPSCAIMISTY 327
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,370,791
Number of extensions: 1548458
Number of successful extensions: 7019
Number of sequences better than 1.0e-05: 67
Number of HSP's gapped: 6853
Number of HSP's successfully gapped: 113
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013183
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013183
(1037 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014905.2| solute carrier family 25 member 38 [Bos taur... 371 e-112
Alignment gi|NP_001192769.1| solute carrier family 25 member 45 [Bos taur... 76 6e-14
Alignment gi|XP_002699388.1| PREDICTED: CG4995-like [Bos taurus]. 76 6e-14
Alignment gi|NP_001069767.1| solute carrier family 25 member 40 [Bos taur... 75 9e-14
Alignment gi|NP_001092365.1| kidney mitochondrial carrier protein 1 [Bos ... 72 6e-13
Alignment gi|NP_001192481.1| mitoferrin-2 [Bos taurus]. 71 1e-12
Alignment gi|XP_002698470.1| PREDICTED: solute carrier family 25, member ... 71 1e-12
Alignment gi|NP_001071404.1| mitochondrial carnitine/acylcarnitine carrie... 71 2e-12
Alignment gi|NP_001071339.1| mitochondrial carnitine/acylcarnitine carrie... 70 2e-12
Alignment gi|NP_001137558.1| mitochondrial ornithine transporter 2 [Bos t... 70 3e-12
>ref|NP_001014905.2| solute carrier family 25 member 38 [Bos taurus].
Length = 306
Score = 371 bits (953), Expect(2) = e-112
Identities = 185/205 (90%), Positives = 196/205 (95%)
Frame = +1
Query: 340 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 519
MIQKSRPALLQ QDVGDRVETLMLQPV+KAFLCGSISGT S LLFQPLDLLKTRLQT+QP
Sbjct: 1 MIQKSRPALLQHQDVGDRVETLMLQPVIKAFLCGSISGTCSTLLFQPLDLLKTRLQTLQP 60
Query: 520 SAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 699
SA GSRRVGMLALLLNVVRTES LGLWKGMSPSIVRCVPGVGIYFG+LYSLKQYFLRGHP
Sbjct: 61 SARGSRRVGMLALLLNVVRTESPLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHP 120
Query: 700 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 879
PTALES+ILG GSRS+AGVCMSPITVIKTRYESGRYGYES+Y+ALRSI HSEG+RGLFSG
Sbjct: 121 PTALESIILGAGSRSVAGVCMSPITVIKTRYESGRYGYESVYAALRSICHSEGFRGLFSG 180
Query: 880 LTATLLRDAPFSGIYLMFYTRPKTL 954
LTATLLRDAPFSGIYLMFY++ K +
Sbjct: 181 LTATLLRDAPFSGIYLMFYSQTKNV 205
Score = 52.0 bits (123), Expect(2) = e-112
Identities = 25/30 (83%), Positives = 27/30 (90%), Gaps = 2/30 (6%)
Frame = +3
Query: 939 QTKNIVLH--DQLDAVLVPVANFSCGIFAG 1022
QTKN+VLH DQLDAVLVP+ NFSCGIFAG
Sbjct: 201 QTKNVVLHRTDQLDAVLVPLVNFSCGIFAG 230
Score = 49.3 bits (116), Expect = 6e-06
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 7/167 (4%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLW 600
+++ + G+ S + + + P+ ++KTR ++ +G V A L ++ +E GL+
Sbjct: 124 LESIILGAGSRSVAGVCMSPITVIKTRYES---GRYGYESV--YAALRSICHSEGFRGLF 178
Query: 601 KGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVIL-------GVGSRSIAGVC 759
G++ +++R P GIY K L H L++V++ G+ + +A +
Sbjct: 179 SGLTATLLRDAPFSGIYLMFYSQTKNVVL--HRTDQLDAVLVPLVNFSCGIFAGILASLV 236
Query: 760 MSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGLTATLLR 900
P VIKT + + I ++ I+ G RG F G LR
Sbjct: 237 TQPADVIKTHMQLFPMKFRWIGQSVTLIFKDYGLRGFFQGSVPRALR 283
>ref|NP_001192769.1| solute carrier family 25 member 45 [Bos taurus].
Length = 288
Score = 75.9 bits (185), Expect = 6e-14
Identities = 61/186 (32%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Frame = +1
Query: 430 FLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGM 609
F+ G ISG +L P D +K RLQT G++ ++ R ESLLG +KGM
Sbjct: 6 FVAGWISGALGLVLGHPFDTVKVRLQTQTTYR------GIVDCMVKTYRHESLLGFFKGM 59
Query: 610 SPSI--VRCVPGV--GIYFGSLYSL---KQYFLRGHPPTALESVILGVGSRSIAGVCMSP 768
S I + V V G+Y +L +L R PP+ I G + C++P
Sbjct: 60 SFPIASIAVVNSVLFGVYSNALLALTATSHQERRAQPPSYTHVFIAGCTGGFLQAYCLAP 119
Query: 769 ITVIKTRYES-----GRYG-----YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSG 918
+IK R ++ + G Y SI+ +EG RGLF G A LRD P G
Sbjct: 120 FDLIKVRLQNQTEPRAKPGSPPPRYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTLG 179
Query: 919 IYLMFY 936
IY + Y
Sbjct: 180 IYFVTY 185
>ref|XP_002699388.1| PREDICTED: CG4995-like [Bos taurus].
Length = 288
Score = 75.9 bits (185), Expect = 6e-14
Identities = 61/186 (32%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Frame = +1
Query: 430 FLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGM 609
F+ G ISG +L P D +K RLQT G++ ++ R ESLLG +KGM
Sbjct: 6 FVAGWISGALGLVLGHPFDTVKVRLQTQTTYR------GIVDCMVKTYRHESLLGFFKGM 59
Query: 610 SPSI--VRCVPGV--GIYFGSLYSL---KQYFLRGHPPTALESVILGVGSRSIAGVCMSP 768
S I + V V G+Y +L +L R PP+ I G + C++P
Sbjct: 60 SFPIASIAVVNSVLFGVYSNALLALTATSHQERRAQPPSYTHVFIAGCTGGFLQAYCLAP 119
Query: 769 ITVIKTRYES-----GRYG-----YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSG 918
+IK R ++ + G Y SI+ +EG RGLF G A LRD P G
Sbjct: 120 FDLIKVRLQNQTEPRAKPGSPPPRYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTLG 179
Query: 919 IYLMFY 936
IY + Y
Sbjct: 180 IYFVTY 185
>ref|NP_001069767.1| solute carrier family 25 member 40 [Bos taurus].
Length = 338
Score = 75.1 bits (183), Expect = 9e-14
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Frame = +1
Query: 544 GMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLR---GHPPTALE 714
G L L ++R E + LW G+ P++V VP IYF + Y LR G + +
Sbjct: 86 GTLDAFLKIIRNEGIKSLWSGLPPTLVMAVPATVIYF-TCYDQLTALLRSKLGENESRIP 144
Query: 715 SVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGLTATL 894
++ G+ +R A +SP+ +I+T+ +S ++ YE ++ + +G+ L+ G T+
Sbjct: 145 -IVAGIVARLGAVTVISPLELIRTKMQSKKFSYEELHRFVSKKVSEDGWISLWRGWAPTI 203
Query: 895 LRDAPFSGIYLMFY-TRPKTLCSMTSWMQSLYLL 993
LRD PFS +Y Y K LC+ + + +++
Sbjct: 204 LRDVPFSAMYWYNYEVLKKWLCAKSGLYEPTFMI 237
Score = 64.7 bits (156), Expect = 1e-10
Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Frame = +1
Query: 433 LCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMS 612
+ G ++ + + PL+L++T++Q+ + S R + V + + LW+G +
Sbjct: 146 VAGIVARLGAVTVISPLELIRTKMQSKKFSYEELHR-----FVSKKVSEDGWISLWRGWA 200
Query: 613 PSIVRCVPGVGIYFGSLYSLKQYFLRG---HPPTALESVILGVGSRSIAGVCMSPITVIK 783
P+I+R VP +Y+ + LK++ + PT + + G S S A V P V+K
Sbjct: 201 PTILRDVPFSAMYWYNYEVLKKWLCAKSGLYEPTFMINFTSGALSGSFAAVVTLPFDVVK 260
Query: 784 TRYESGRYGYE----------SIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMF 933
T+ ++ + YE S ++ +++I G+ GLF+GL L++ AP + +
Sbjct: 261 TQKQTQLWIYESQKISMPLQMSTWTIMKNIVAKNGFSGLFTGLIPRLIKIAPACAVMIST 320
Query: 934 Y 936
Y
Sbjct: 321 Y 321
>ref|NP_001092365.1| kidney mitochondrial carrier protein 1 [Bos taurus].
Length = 291
Score = 72.4 bits (176), Expect = 6e-13
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 10/196 (5%)
Frame = +1
Query: 397 ETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVR 576
ETL++ V CG +SG S+ + P D+LK R+Q + G GM+ +N+ +
Sbjct: 104 ETLLINVV-----CGILSGVISSSIANPTDVLKIRMQAQSSTLQG----GMIGNFINIYQ 154
Query: 577 TESLLGLWKGMSPSIVRCVPGVGIYFGSLYSL--KQYFLRGHPPTALESVILGVGSRSIA 750
E GLWKG+S + R VG+ +Y L K L G + + L + +A
Sbjct: 155 QEGTRGLWKGVSLTAQRAAIVVGVEL-PVYDLTKKHLILSGLMGDTVYTHFLSSFTCGLA 213
Query: 751 GVCMS-PITVIKTRYESGRY-------GYESIYSALRSIYHSEGYRGLFSGLTATLLRDA 906
G S P+ V++TR + R GY+ L + +EG+ L+ G LR
Sbjct: 214 GALASNPVDVVRTRMMNQRVLRDGKCPGYKGTLDCLLQTWKNEGFFALYKGFWPNWLRLG 273
Query: 907 PFSGIYLMFYTRPKTL 954
P++ I+ + Y + K L
Sbjct: 274 PWNIIFFVAYEQLKKL 289
Score = 68.9 bits (167), Expect = 7e-12
Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 7/182 (3%)
Frame = +1
Query: 424 KAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGS-----RRVGMLALLLNVVRTESL 588
K F+ G ++ + P+DL KTRLQ +Q + + R GML L+ + R E L
Sbjct: 7 KPFVYGGLASITAECGTFPIDLTKTRLQ-IQGQKNDANFKEIRYRGMLHALVRIGREEGL 65
Query: 589 LGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFL-RGHPPTALESVILGVGSRSIAGVCMS 765
L+ G++P+++R I G+ SLK+ F+ R T L +V+ G+ S I+ +
Sbjct: 66 KALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVERPEDETLLINVVCGILSGVISSSIAN 125
Query: 766 PITVIKTRYESGRYGYE-SIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFYTR 942
P V+K R ++ + + +IY EG RGL+ G++ T R A G+ L Y
Sbjct: 126 PTDVLKIRMQAQSSTLQGGMIGNFINIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYDL 185
Query: 943 PK 948
K
Sbjct: 186 TK 187
>ref|NP_001192481.1| mitoferrin-2 [Bos taurus].
Length = 364
Score = 71.2 bits (173), Expect = 1e-12
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 4/198 (2%)
Frame = +1
Query: 355 RPALLQPQDVGDRVETLMLQPVVKAFL-CGSISGTFSALLFQPLDLLKTRLQTVQPSAHG 531
RP + Q D E L V + G+++G + P+D +KTR+Q++QP
Sbjct: 50 RPPVRQDPDSSPDYEALPAGATVTTHMVAGAVAGILEHCVMYPVDCVKTRMQSLQPDP-A 108
Query: 532 SRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTAL 711
+R +L L ++RTE L +G++ + P +YF LK+ P
Sbjct: 109 ARYRNVLEALWRIIRTEGLWRPMRGLNVTATGAGPAHALYFACYEKLKKTLSDVIHPGGN 168
Query: 712 ESVILGVG---SRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGL 882
+ G + + M+P+ V+K R + Y + +R+++ +EG +
Sbjct: 169 SHIANGAAGCVATLLHDAAMNPVEVVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRSY 228
Query: 883 TATLLRDAPFSGIYLMFY 936
T L + PF I+ M Y
Sbjct: 229 TTQLTMNVPFQAIHFMTY 246
>ref|XP_002698470.1| PREDICTED: solute carrier family 25, member 28-like [Bos taurus].
Length = 364
Score = 71.2 bits (173), Expect = 1e-12
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 4/198 (2%)
Frame = +1
Query: 355 RPALLQPQDVGDRVETLMLQPVVKAFL-CGSISGTFSALLFQPLDLLKTRLQTVQPSAHG 531
RP + Q D E L V + G+++G + P+D +KTR+Q++QP
Sbjct: 50 RPPVRQDPDSSPDYEALPAGATVTTHMVAGAVAGILEHCVMYPVDCVKTRMQSLQPDP-A 108
Query: 532 SRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTAL 711
+R +L L ++RTE L +G++ + P +YF LK+ P
Sbjct: 109 ARYRNVLEALWRIIRTEGLWRPMRGLNVTATGAGPAHALYFACYEKLKKTLSDVIHPGGN 168
Query: 712 ESVILGVG---SRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGL 882
+ G + + M+P+ V+K R + Y + +R+++ +EG +
Sbjct: 169 SHIANGAAGCVATLLHDAAMNPVEVVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRSY 228
Query: 883 TATLLRDAPFSGIYLMFY 936
T L + PF I+ M Y
Sbjct: 229 TTQLTMNVPFQAIHFMTY 246
>ref|NP_001071404.1| mitochondrial carnitine/acylcarnitine carrier protein [Bos taurus].
Length = 301
Score = 70.9 bits (172), Expect = 2e-12
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 10/209 (4%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRV--GMLALLLNVVRTESLLG 594
+K L G G + PLD +K RLQT PS G + G + E + G
Sbjct: 11 LKNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLMREGIRG 70
Query: 595 LWKGMSPSIVRCVPGVGI-YFGSLYSLKQYFLRGHPPTALE-------SVILGVGSRSIA 750
L++GM+ IV P + +FG + L + + HP L ++ GV + I
Sbjct: 71 LYRGMAAPIVGVTPMFAVCFFG--FGLGKKLQQKHPEDVLSYPQIFAAGMLSGVFTTGIM 128
Query: 751 GVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLM 930
+++ + SG Y + +Y G RG++ G TL+RD P SG+Y M
Sbjct: 129 TPGERIKCLLQIQASSGETKYTGPLDCAKKLYKEAGVRGIYKGTVLTLMRDVPASGMYFM 188
Query: 931 FYTRPKTLCSMTSWMQSLYLLQTSAVGYL 1017
Y W+++++ + +V L
Sbjct: 189 TY----------EWLKNIFTPEGKSVNEL 207
>ref|NP_001071339.1| mitochondrial carnitine/acylcarnitine carrier protein CACL [Bos
taurus].
Length = 298
Score = 70.5 bits (171), Expect = 2e-12
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 4/173 (2%)
Frame = +1
Query: 430 FLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGM 609
FL G G L+ P D +K RLQ S + G L +++ ES+LGL++G+
Sbjct: 5 FLAGCAGGVAGVLVGHPFDTVKVRLQV--QSVEKPQYRGTLHCFQAIIKQESVLGLYRGL 62
Query: 610 SPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCMSPITVIKTR 789
++ + FG + + R P L + G + +I V P+ + KTR
Sbjct: 63 GSPLLGLTFINALVFGVQGNTLRALGRDSP---LNQFLAGAAAGAIQCVICCPMELAKTR 119
Query: 790 YESGRYG----YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
+ G Y L IY EG RG+ G+ +TLLR+ P G+Y + Y
Sbjct: 120 LQLQEAGPARTYRGPLDCLAQIYRQEGLRGVNRGMVSTLLRETPSFGVYFLTY 172
Score = 70.1 bits (170), Expect = 3e-12
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 7/182 (3%)
Frame = +1
Query: 385 GDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLL 564
G+ + L + FL G+ +G ++ P++L KTRLQ + + R G L L
Sbjct: 81 GNTLRALGRDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQEAGPARTYR-GPLDCLA 139
Query: 565 NVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTAL--ESVILGVGS 738
+ R E L G+ +GM +++R P G+YF + Y + L P L ++L G+
Sbjct: 140 QIYRQEGLRGVNRGMVSTLLRETPSFGVYFLT-YDVLTRALGCEPGDRLLVPKLLLAGGT 198
Query: 739 RSIAG-VCMSPITVIKTRYES----GRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRD 903
IA + P+ V+K+R ++ G Y I ++ Y EG+R GL +TLLR
Sbjct: 199 SGIASWLSTYPVDVVKSRLQADGLQGAPRYRGIVDCVQQSYREEGWRVFTRGLASTLLRA 258
Query: 904 AP 909
P
Sbjct: 259 FP 260
>ref|NP_001137558.1| mitochondrial ornithine transporter 2 [Bos taurus].
Length = 301
Score = 70.1 bits (170), Expect = 3e-12
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 10/176 (5%)
Frame = +1
Query: 439 GSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVG----MLALLLNVVRTESLLGLWKG 606
GSI+ F+AL P +L+K RLQT+ R + +++ +++R + G + G
Sbjct: 113 GSIASAFAALALCPTELVKCRLQTMHELEMSGRIAKSHDTVWSVVKSILRKDGPWGFYHG 172
Query: 607 MSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCM----SPIT 774
++ ++ + VPG +FG + +F G L V L + S IAG+C+ P+
Sbjct: 173 LTSTLFQVVPGYFFFFGGYELSRSFFASGGSKDELGPVPLML-SGGIAGICLWFVIYPVD 231
Query: 775 VIKTRYES-GRYGYESIY-SALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
IK+R + +G ++ + L S+ +EG L+SGL ATL+R P + + Y
Sbjct: 232 CIKSRIQVLSMFGKQTGFIRTLLSVVRTEGIAALYSGLKATLIRAFPANAALFLAY 287
Score = 55.8 bits (133), Expect = 6e-08
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Frame = +1
Query: 415 PVVKAFL---CGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTES 585
P ++A + G++ GT L QP D +K ++QT P + G+ L
Sbjct: 5 PAIQAAIDLTAGALGGTACVLTGQPFDTMKVKMQTF-PGLY----KGLTDCALKTYSQVG 59
Query: 586 LLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLR---GHPPTA----LESVILGVGSRS 744
L G +KG P+++ V + F Y Q+F+R G A L++ G + +
Sbjct: 60 LRGFYKGTGPALMAYVAENSVLF-MCYGFCQHFVRKVAGLDEQAKLNDLQTAAAGSIASA 118
Query: 745 IAGVCMSPITVIKTRYE-------SGRY--GYESIYSALRSIYHSEGYRGLFSGLTATLL 897
A + + P ++K R + SGR +++++S ++SI +G G + GLT+TL
Sbjct: 119 FAALALCPTELVKCRLQTMHELEMSGRIAKSHDTVWSVVKSILRKDGPWGFYHGLTSTLF 178
Query: 898 RDAPFSGIYLMF 933
+ P G + F
Sbjct: 179 QVVP--GYFFFF 188
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,323,063
Number of extensions: 1512119
Number of successful extensions: 6782
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 6651
Number of HSP's successfully gapped: 76
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013183
(1037 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358423.1| PREDICTED: solute carrier family 25 member 3... 396 e-122
Alignment gi|XP_003358424.1| PREDICTED: solute carrier family 25 member 3... 396 e-120
Alignment gi|XP_003122611.1| PREDICTED: solute carrier family 25 member 4... 80 2e-15
Alignment gi|XP_003128768.2| PREDICTED: hypothetical protein LOC100513364... 79 4e-15
Alignment gi|XP_003133213.2| PREDICTED: mitoferrin-2 [Sus scrofa]. 72 4e-13
Alignment gi|XP_003360489.1| PREDICTED: brain mitochondrial carrier prote... 69 3e-12
Alignment gi|XP_003135426.2| PREDICTED: brain mitochondrial carrier prote... 69 3e-12
Alignment gi|XP_003128771.1| PREDICTED: mitochondrial carnitine/acylcarni... 69 4e-12
Alignment gi|NP_001230839.1| solute carrier family 25 (mitochondrial carr... 69 4e-12
Alignment gi|XP_003131413.2| PREDICTED: solute carrier family 25 member 3... 69 6e-12
>ref|XP_003358423.1| PREDICTED: solute carrier family 25 member 38-like isoform 1 [Sus
scrofa].
Length = 304
Score = 396 bits (1018), Expect(2) = e-122
Identities = 199/205 (97%), Positives = 202/205 (98%)
Frame = +1
Query: 340 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 519
MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP
Sbjct: 1 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 60
Query: 520 SAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 699
SAHGSRR+GMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP
Sbjct: 61 SAHGSRRIGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 120
Query: 700 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 879
PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG
Sbjct: 121 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 180
Query: 880 LTATLLRDAPFSGIYLMFYTRPKTL 954
LTATLLRDAPFSGIYLMFY + K +
Sbjct: 181 LTATLLRDAPFSGIYLMFYNQTKNI 205
Score = 60.5 bits (145), Expect(2) = e-122
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +3
Query: 936 HQTKNIVLHDQLDAVLVPVANFSCGIFAG 1022
+QTKNIVLHDQLDAVLVPVANFSCGIFAG
Sbjct: 200 NQTKNIVLHDQLDAVLVPVANFSCGIFAG 228
>ref|XP_003358424.1| PREDICTED: solute carrier family 25 member 38-like isoform 2 [Sus
scrofa].
Length = 311
Score = 396 bits (1018), Expect(2) = e-120
Identities = 199/205 (97%), Positives = 202/205 (98%)
Frame = +1
Query: 340 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 519
MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP
Sbjct: 1 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 60
Query: 520 SAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 699
SAHGSRR+GMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP
Sbjct: 61 SAHGSRRIGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 120
Query: 700 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 879
PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG
Sbjct: 121 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 180
Query: 880 LTATLLRDAPFSGIYLMFYTRPKTL 954
LTATLLRDAPFSGIYLMFY + K +
Sbjct: 181 LTATLLRDAPFSGIYLMFYNQTKNI 205
Score = 53.5 bits (127), Expect(2) = e-120
Identities = 28/36 (77%), Positives = 29/36 (80%), Gaps = 7/36 (19%)
Frame = +3
Query: 936 HQTKNIVLH-------DQLDAVLVPVANFSCGIFAG 1022
+QTKNIVLH DQLDAVLVPVANFSCGIFAG
Sbjct: 200 NQTKNIVLHGTVKGRCDQLDAVLVPVANFSCGIFAG 235
>ref|XP_003122611.1| PREDICTED: solute carrier family 25 member 45-like [Sus scrofa].
Length = 288
Score = 79.7 bits (195), Expect = 2e-15
Identities = 63/189 (33%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLW 600
V+ F+ G ISG +L P D +K RLQT G++ ++ R ESLLG +
Sbjct: 3 VEEFVAGWISGALGLVLGHPFDTVKVRLQTQTTYR------GIVDCMVKTYRHESLLGFF 56
Query: 601 KGMSPSI--VRCVPGV--GIYFGSLYSL---KQYFLRGHPPTALESVILGVGSRSIAGVC 759
KGMS I + V V G+Y +L +L R PP+ I G + C
Sbjct: 57 KGMSFPIASIAVVNSVLFGVYSNALLALTATSHQERRAQPPSYTHVFIAGCTGGFLQAYC 116
Query: 760 MSPITVIKTRYES-----GRYG-----YESIYSALRSIYHSEGYRGLFSGLTATLLRDAP 909
+SP+ IK R ++ + G Y SI+ +EG RGLF G A LRD P
Sbjct: 117 LSPLDFIKVRLQNQTEPRAKLGSPPPRYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTP 176
Query: 910 FSGIYLMFY 936
GIY + Y
Sbjct: 177 TMGIYFVTY 185
>ref|XP_003128768.2| PREDICTED: hypothetical protein LOC100513364 [Sus scrofa].
Length = 772
Score = 79.0 bits (193), Expect = 4e-15
Identities = 78/287 (27%), Positives = 117/287 (40%), Gaps = 5/287 (1%)
Frame = +1
Query: 91 GHDGQDSRAAESAKRVKRGAWSTQGQWARRPGPLTGADYKEAPAVERVAWLPPSSCLLQD 270
G G++ A+ A R A S GQ R+ GP + AP+V A +P C+
Sbjct: 245 GDAGREETPAQQAWRRMLTAASRTGQGTRQLGPFQAVGKQLAPSVGLRAKVP---CVTNS 301
Query: 271 LQGRT*VPTVGNPGPVHSQA-SPPMIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSI 447
L + + TV GP H+ A SPP + S P P G
Sbjct: 302 LDKQ--LVTVKERGPAHNPAWSPPSVTSSAPL---PGTNGS----------------SPA 340
Query: 448 SGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVR 627
G L+ P D +K RLQ S + G L +++ ES+LGL+KG+ ++
Sbjct: 341 RGVAGVLVGHPFDTVKVRLQV--QSMEKPQYRGTLHCFQAIIKQESVLGLYKGLGSPLMG 398
Query: 628 CVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCMSPITVIKTRYESGRY 807
+ FG + + + P + G + +I V P+ + KTR +
Sbjct: 399 LTFINALVFGVQGNTLRALGQDSPRNQF---LAGAAAGAIQCVVCCPMELAKTRLQLQDA 455
Query: 808 G----YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
G Y L IY EG RG+ G+ +TLLR+ P G+Y + Y
Sbjct: 456 GPARTYRGSLDCLAQIYRREGLRGVNRGMISTLLRETPSFGVYFLTY 502
>ref|XP_003133213.2| PREDICTED: mitoferrin-2 [Sus scrofa].
Length = 364
Score = 72.4 bits (176), Expect = 4e-13
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 4/198 (2%)
Frame = +1
Query: 355 RPALLQPQDVGDRVETLMLQPVVKAFL-CGSISGTFSALLFQPLDLLKTRLQTVQPSAHG 531
RP + Q D G E L V + G+++G + P+D +KTR+Q++QP
Sbjct: 50 RPPVRQDPDSGPDYEALPAGATVTTHMVAGAVAGILEHCVMYPIDCVKTRMQSLQPDP-A 108
Query: 532 SRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTAL 711
+R +L L ++RTE L +G++ + P +YF LK+ P
Sbjct: 109 ARYRNVLEALWRIIRTEGLWRPMRGLNVTATGAGPAHALYFACYEKLKKTLSDVIHPGGN 168
Query: 712 ESVILGVG---SRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGL 882
+ G + + M+P V+K R + Y + +R+++ +EG +
Sbjct: 169 SHIANGAAGCVATLLHDAAMNPAEVVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRSY 228
Query: 883 TATLLRDAPFSGIYLMFY 936
T L + PF I+ M Y
Sbjct: 229 TTQLTMNVPFQAIHFMTY 246
>ref|XP_003360489.1| PREDICTED: brain mitochondrial carrier protein 1-like isoform 2
[Sus scrofa].
Length = 325
Score = 69.3 bits (168), Expect = 3e-12
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 6/177 (3%)
Frame = +1
Query: 424 KAFLCGSISGTFSALLFQPLDLLKTRL----QTVQPSAHGSRRVGMLALLLNVVRTESLL 591
K F+ G ++ + P+DL KTRL Q++ + GM L + + E +L
Sbjct: 42 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGVL 101
Query: 592 GLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFL-RGHPPTALESVILGVGSRSIAGVCMSP 768
L+ G++P+++R I G SLK+ F+ R T L ++I GV S I+ +P
Sbjct: 102 ALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANP 161
Query: 769 ITVIKTRYES-GRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
V+K R ++ G S+ + IY EG RGL+ G+ T R A G+ L Y
Sbjct: 162 TDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVY 218
Score = 63.9 bits (154), Expect = 1e-10
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 9/196 (4%)
Frame = +1
Query: 394 VETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVV 573
VE L + ++ +CG +SG S+ + P D+LK R+Q GS M+ +++
Sbjct: 133 VERLEDETLLINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGS----MIGSFIDIY 188
Query: 574 RTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSL--KQYFLRGHPPTALESVILGVGSRSI 747
+ E GLW+G+ P+ R VG+ +Y + K L G + + + + +
Sbjct: 189 QQEGTRGLWRGVVPTAQRAAIVVGVEL-PVYDITKKHLILSGVLGDTILTHFVSSFTCGL 247
Query: 748 AGVCMS-PITVIKTRYESGR--YGYESIY----SALRSIYHSEGYRGLFSGLTATLLRDA 906
AG S P+ V++TR + R G+ +Y + ++ EG+ L+ G LR
Sbjct: 248 AGALASNPVDVVRTRMMNQRAIVGHVDLYKGTLDGILKMWKHEGFFALYKGFWPNWLRLG 307
Query: 907 PFSGIYLMFYTRPKTL 954
P++ I+ + Y + K L
Sbjct: 308 PWNIIFFITYEQLKRL 323
>ref|XP_003135426.2| PREDICTED: brain mitochondrial carrier protein 1-like isoform 1
[Sus scrofa].
Length = 325
Score = 69.3 bits (168), Expect = 3e-12
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 6/177 (3%)
Frame = +1
Query: 424 KAFLCGSISGTFSALLFQPLDLLKTRL----QTVQPSAHGSRRVGMLALLLNVVRTESLL 591
K F+ G ++ + P+DL KTRL Q++ + GM L + + E +L
Sbjct: 42 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGVL 101
Query: 592 GLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFL-RGHPPTALESVILGVGSRSIAGVCMSP 768
L+ G++P+++R I G SLK+ F+ R T L ++I GV S I+ +P
Sbjct: 102 ALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANP 161
Query: 769 ITVIKTRYES-GRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
V+K R ++ G S+ + IY EG RGL+ G+ T R A G+ L Y
Sbjct: 162 TDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVY 218
Score = 63.9 bits (154), Expect = 1e-10
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 9/196 (4%)
Frame = +1
Query: 394 VETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVV 573
VE L + ++ +CG +SG S+ + P D+LK R+Q GS M+ +++
Sbjct: 133 VERLEDETLLINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGS----MIGSFIDIY 188
Query: 574 RTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSL--KQYFLRGHPPTALESVILGVGSRSI 747
+ E GLW+G+ P+ R VG+ +Y + K L G + + + + +
Sbjct: 189 QQEGTRGLWRGVVPTAQRAAIVVGVEL-PVYDITKKHLILSGVLGDTILTHFVSSFTCGL 247
Query: 748 AGVCMS-PITVIKTRYESGR--YGYESIY----SALRSIYHSEGYRGLFSGLTATLLRDA 906
AG S P+ V++TR + R G+ +Y + ++ EG+ L+ G LR
Sbjct: 248 AGALASNPVDVVRTRMMNQRAIVGHVDLYKGTLDGILKMWKHEGFFALYKGFWPNWLRLG 307
Query: 907 PFSGIYLMFYTRPKTL 954
P++ I+ + Y + K L
Sbjct: 308 PWNIIFFITYEQLKRL 323
>ref|XP_003128771.1| PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein
CACL-like [Sus scrofa].
Length = 310
Score = 68.9 bits (167), Expect = 4e-12
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Frame = +1
Query: 430 FLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGM 609
FL G+ +G ++ P++L KTRLQ +Q + G L L + R E L G+ +GM
Sbjct: 103 FLPGAAAGAIQCVVCCPMELAKTRLQ-LQDAGPARTYRGSLDCLAQIYRREGLRGVNRGM 161
Query: 610 SPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTAL---ESVILGVGSRSIAGVCMSPITVI 780
+++R P G+YF + Y + L P L + ++ G S ++ + P+ V+
Sbjct: 162 ISTLLRETPSFGVYFLT-YDVLTRALGCEPGDRLLVPKLLLAGGTSGIMSWLSTYPVDVV 220
Query: 781 KTRYES----GRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAP 909
K+R ++ G Y+ I +R Y +EG+R GL +TLLR P
Sbjct: 221 KSRLQADGLRGAPRYQGILDCVRQSYRAEGWRVFTRGLASTLLRAFP 267
Score = 62.0 bits (149), Expect = 5e-10
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 5/169 (2%)
Frame = +1
Query: 445 ISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIV 624
++G L+ P D +K RLQ S + G L +++ ES+LGL+KG+ ++
Sbjct: 17 LAGVAGVLVGHPFDTVKVRLQV--QSMEKPQYRGTLHCFQAIIKQESVLGLYKGLGSPLM 74
Query: 625 RCVPGVGIYFGSLYSLKQYFLRGHPPTALESVIL-GVGSRSIAGVCMSPITVIKTRYESG 801
G+ ++ ++ LR + + L G + +I V P+ + KTR +
Sbjct: 75 ----GLTFINALVFGVQGNTLRALGQDSPRNQFLPGAAAGAIQCVVCCPMELAKTRLQLQ 130
Query: 802 RYG----YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
G Y L IY EG RG+ G+ +TLLR+ P G+Y + Y
Sbjct: 131 DAGPARTYRGSLDCLAQIYRREGLRGVNRGMISTLLRETPSFGVYFLTY 179
>ref|NP_001230839.1| solute carrier family 25 (mitochondrial carrier; ornithine
transporter) member 15 [Sus scrofa].
Length = 301
Score = 68.9 bits (167), Expect = 4e-12
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Frame = +1
Query: 439 GSISGTFSALLFQPLDLLKTRLQTVQPSAHGSR----RVGMLALLLNVVRTESLLGLWKG 606
GS + F+AL+ P +L+K RLQT+ + + + +++ +++R + LG + G
Sbjct: 113 GSFASAFAALVLCPTELVKCRLQTMYEMETSGKIAKSQNTVWSVVKSILRKDGPLGFYHG 172
Query: 607 MSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCM----SPIT 774
+S +++R VPG +FG + +F G L V L + S G+C+ P+
Sbjct: 173 LSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPVPLML-SGGFGGICLWLAVYPVD 231
Query: 775 VIKTRYE----SGRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFYTR 942
IK+R + SG+ S+ +EG L+SGL T++R P +G + Y
Sbjct: 232 CIKSRIQVLSMSGKQA--GFIGTFISVVKNEGITALYSGLKPTMIRAFPANGALFLAYEY 289
Query: 943 PKTL 954
+ L
Sbjct: 290 SRKL 293
Score = 51.2 bits (121), Expect = 9e-07
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Frame = +1
Query: 415 PVVKAFL---CGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTES 585
P ++A + G+ GT L QP D +K ++QT P + G+ L
Sbjct: 5 PAIQAAIDLTAGAAGGTACVLTGQPFDTMKVKMQTF-PDLYR----GLTDCCLKTYSQVG 59
Query: 586 LLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLR---GHPPTA----LESVILGVGSRS 744
G +KG SP+++ + + F Y Q +R G A L++ G + +
Sbjct: 60 FRGFYKGTSPALIANIAENSVLF-MCYGFCQQVVRKVAGLDRQAKLSDLQNAAAGSFASA 118
Query: 745 IAGVCMSPITVIKTRYE-------SGRY--GYESIYSALRSIYHSEGYRGLFSGLTATLL 897
A + + P ++K R + SG+ +++S ++SI +G G + GL++TLL
Sbjct: 119 FAALVLCPTELVKCRLQTMYEMETSGKIAKSQNTVWSVVKSILRKDGPLGFYHGLSSTLL 178
Query: 898 RDAPFSGIYLMF 933
R+ P G + F
Sbjct: 179 REVP--GYFFFF 188
>ref|XP_003131413.2| PREDICTED: solute carrier family 25 member 39-like [Sus scrofa].
Length = 408
Score = 68.6 bits (166), Expect = 6e-12
Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 14/254 (5%)
Frame = +1
Query: 310 GPVHS-QASPPM------IQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSAL 468
GP S Q PP + K R +P + + L + A L S+ T
Sbjct: 65 GPARSDQTCPPPPVTPLDVVKVRLQSQRPSVASELMPPSRLWSLSYAKLPSSLQSTGKCF 124
Query: 469 LF-----QPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCV 633
L+ +PL L + +R G + + +VR E LW G+ ++V V
Sbjct: 125 LYCNGVLEPLYLCPNGTRCATWFQDPTRFTGTVDAFVKIVRHEGTRTLWSGLPATLVMTV 184
Query: 634 PGVGIYFGSLYSLKQYFLRGHPPTA--LESVILGVGSRSIAGVCMSPITVIKTRYESGRY 807
P +YF + LK FL G T+ ++ G +R +SP+ +++T+ ++
Sbjct: 185 PATAVYFTAYDQLKA-FLCGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQHL 243
Query: 808 GYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFYTRPKTLCSMTSWMQSLY 987
Y + + +R+ G+R L+ G T LRD PFS +Y Y K SW+ +
Sbjct: 244 SYRELGTCVRAAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVK------SWLTAFR 297
Query: 988 LLQTSAVGYLLDSG 1029
++VG +G
Sbjct: 298 PKDPTSVGISFVAG 311
Score = 53.1 bits (126), Expect = 2e-07
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 27/199 (13%)
Frame = +1
Query: 421 VKAFLCGS----------ISGTFSAL----LFQPLDLLKTRLQTVQPSAHGSRRVGMLAL 558
+KAFLCG ++G + L + PL+L++T+LQ S R +G
Sbjct: 197 LKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQHLSY---RELG--TC 251
Query: 559 LLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP--PTALE-SVILG 729
+ V LW G P+ +R VP +Y+ + +K + P PT++ S + G
Sbjct: 252 VRAAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLTAFRPKDPTSVGISFVAG 311
Query: 730 VGSRSIAGVCMSPITVIKTRYESGRYGYESI----------YSALRSIYHSEGYRGLFSG 879
S ++A + P V+KT+ + E++ + L+ I G RGLF+G
Sbjct: 312 GISGTVAAILTLPFDVVKTQRQVALGAVEAVRVTPPRAISTWLLLQRIRAESGTRGLFAG 371
Query: 880 LTATLLRDAPFSGIYLMFY 936
+++ AP I + Y
Sbjct: 372 FLPRIVKAAPSCAIMISTY 390
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,245,692
Number of extensions: 976279
Number of successful extensions: 4398
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 4312
Number of HSP's successfully gapped: 60
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013183
(1037 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659042.1| solute carrier family 25 member 38 [Mus musculu... 341 e-100
Alignment gi|NP_848881.2| solute carrier family 25 member 40 [Mus musculu... 78 1e-14
Alignment gi|NP_598915.1| solute carrier family 25 member 45 [Mus musculu... 74 1e-13
Alignment gi|NP_080347.1| mitochondrial thiamine pyrophosphate carrier [M... 73 4e-13
Alignment gi|NP_080508.1| kidney mitochondrial carrier protein 1 [Mus mus... 72 5e-13
Alignment gi|NP_851845.1| mitochondrial carnitine/acylcarnitine carrier p... 72 7e-13
Alignment gi|NP_766165.2| mitochondrial 2-oxodicarboxylate carrier isofor... 71 1e-12
Alignment gi|NP_080818.1| solute carrier family 25 member 39 [Mus musculu... 71 1e-12
Alignment gi|NP_001161448.1| mitochondrial 2-oxodicarboxylate carrier iso... 70 3e-12
Alignment gi|NP_780403.1| graves disease carrier protein homolog [Mus mus... 70 3e-12
>ref|NP_659042.1| solute carrier family 25 member 38 [Mus musculus].
Length = 326
Score = 341 bits (875), Expect(2) = e-100
Identities = 171/205 (83%), Positives = 186/205 (90%)
Frame = +1
Query: 337 PMIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQ 516
P+I+K+R ALLQ QDV D VETLML PV+KAFLCGSISGT S LLFQPLDLLKTRLQ +Q
Sbjct: 20 PVIEKARSALLQSQDVEDTVETLMLHPVIKAFLCGSISGTCSTLLFQPLDLLKTRLQALQ 79
Query: 517 PSAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGH 696
PS G RRVGMLA+ L VVRTESLLGLWKGMSPSIVRCVPGVGIYFG+LYS KQYFLRGH
Sbjct: 80 PSDLGPRRVGMLAVFLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSSKQYFLRGH 139
Query: 697 PPTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFS 876
PPTALESVILG+GSRS+AGVCMSPITVIKTRYESG Y YESIY+ALRSIY SEG+RGLF
Sbjct: 140 PPTALESVILGMGSRSVAGVCMSPITVIKTRYESGTYSYESIYAALRSIYCSEGHRGLFR 199
Query: 877 GLTATLLRDAPFSGIYLMFYTRPKT 951
GLTATLLRDAPFSG+YLMFY++ +T
Sbjct: 200 GLTATLLRDAPFSGLYLMFYSQTRT 224
Score = 42.0 bits (97), Expect(2) = e-100
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Frame = +3
Query: 939 QTKNIVLHD--QLDAVLVPVANFSCGIFAG 1022
QT+ VLH QLDA L+P+ NFSCGIFAG
Sbjct: 221 QTRTAVLHGTAQLDAALIPLINFSCGIFAG 250
>ref|NP_848881.2| solute carrier family 25 member 40 [Mus musculus].
Length = 337
Score = 77.8 bits (190), Expect = 1e-14
Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Frame = +1
Query: 544 GMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLR---GHPPTALE 714
G L L ++R E + LW G+ P++V +P IYF + Y FL+ G T +
Sbjct: 87 GTLDAFLKILRNEGIKSLWSGLPPTLVMAIPATVIYF-TCYEQLSAFLKTKLGENETRIP 145
Query: 715 SVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGLTATL 894
++ GV +R A +SP+ +I+T+ +S ++ Y+ +Y + +G+ L+ G T+
Sbjct: 146 -IVAGVVARFGAVTVISPLELIRTKVQSKKFSYKELYQFVSMRVSEDGWISLWKGWAPTI 204
Query: 895 LRDAPFSGIYLMFYTRPKT-LCSMTSWMQSLYLL 993
LRD PFS +Y Y K LC + + +++
Sbjct: 205 LRDVPFSAMYWYNYENLKRWLCEKSGLYEPTFMI 238
>ref|NP_598915.1| solute carrier family 25 member 45 [Mus musculus].
Length = 288
Score = 74.3 bits (181), Expect = 1e-13
Identities = 61/189 (32%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLW 600
V+ F+ G ISG +L P D +K RLQT S G++ ++ R ES+LG +
Sbjct: 3 VEEFVAGWISGAVGLVLGHPFDTVKVRLQTQ------STYQGIVDCVVKTYRHESVLGFF 56
Query: 601 KGMSPSI--VRCVPGV--GIYFGSLYSL---KQYFLRGHPPTALESVILGVGSRSIAGVC 759
KGMS I V V V G+Y +L +L R PP+ I G + C
Sbjct: 57 KGMSFPIASVALVNSVLFGVYSNTLLALTATSHQERRAQPPSYTNIFIAGCTGGLLQAYC 116
Query: 760 MSPITVIKTRYESGRYGYESIYSAL----------RSIYHSEGYRGLFSGLTATLLRDAP 909
++P +IK R ++ I S++ SI EG +GLF G A +LRD P
Sbjct: 117 LAPFDLIKVRLQNQTEPRMQISSSMPRYRGPVHCAASILREEGPQGLFRGSWALVLRDTP 176
Query: 910 FSGIYLMFY 936
G+Y + Y
Sbjct: 177 TLGMYFVTY 185
Score = 63.5 bits (153), Expect = 3e-10
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 9/178 (5%)
Frame = +1
Query: 430 FLCGSISGTFSALLFQPLDLLKTRLQT-----VQPSAHGSRRVGMLALLLNVVRTESLLG 594
F+ G G A P DL+K RLQ +Q S+ R G + +++R E G
Sbjct: 103 FIAGCTGGLLQAYCLAPFDLIKVRLQNQTEPRMQISSSMPRYRGPVHCAASILREEGPQG 162
Query: 595 LWKGMSPSIVRCVPGVGIYFGSLYSL-KQYFLRGHPPTALESVILGVGSRSIAGVCMSPI 771
L++G ++R P +G+YF + L +QY G P++ ++ G + + + +P
Sbjct: 163 LFRGSWALVLRDTPTLGMYFVTYEGLCRQYTPEGQNPSSATVLVAGGFAGIASWITATPF 222
Query: 772 TVIKTRYE-SGRYG--YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
VIK+R + G G Y + + S + EG F G+T R P + + Y
Sbjct: 223 DVIKSRMQMDGLKGRKYGGMLDCMASSFRQEGIGVFFKGMTLNSARAFPVNAATFLSY 280
>ref|NP_080347.1| mitochondrial thiamine pyrophosphate carrier [Mus musculus].
Length = 318
Score = 72.8 bits (177), Expect = 4e-13
Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Frame = +1
Query: 430 FLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRV--GMLALLLNVVRTESLLGLWK 603
F+CG +S + L P+D+L+TRL +A G ++ + + + +TE +K
Sbjct: 122 FVCGGLSAGTATLTVHPVDVLRTRL-----AAQGEPKIYNNLREAIRTMYKTEGPFVFYK 176
Query: 604 GMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTA-----LESVILGVGSRSIAGVCMSP 768
G++P+++ P G+ F SLK+ + PP L++++ G GS I+ P
Sbjct: 177 GLTPTVIAIFPYAGLQFSCYRSLKRAYDWLIPPDGKQTGNLKNLLCGCGSGVISKTFTYP 236
Query: 769 ITVIKTRYESGRY-----------GYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFS 915
+ +IK R + G + Y + + + EG RG F GL+ +L++ A +
Sbjct: 237 LDLIKKRLQVGGFEHARSAFGQVRSYRGLLDLTQQVLQEEGTRGFFKGLSPSLMKAALST 296
Query: 916 GIYLMFY 936
G +Y
Sbjct: 297 GFMFFWY 303
Score = 56.2 bits (134), Expect = 4e-08
Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Frame = +1
Query: 433 LCGSISGTFSALLFQPLDLLKTRLQT----VQPSAHGSRRVGMLALLLNVVRTESLLGLW 600
+ GS+SG + L PLD++K R Q + PS ++ G+ +++ E W
Sbjct: 20 VAGSVSGFVTRALISPLDVIKIRFQLQIERLCPSDPNAKYHGIFQAAKQILQEEGPRAFW 79
Query: 601 KGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALE---SVILGVGSRSIAGVCMSPI 771
KG P+ + + + F + L + + + + + G S A + + P+
Sbjct: 80 KGHVPAQILSIGYGAVQFLAFEELTELLYQANLYQTHQFSAHFVCGGLSAGTATLTVHPV 139
Query: 772 TVIKTRYESGRYG--YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
V++TR + Y ++ A+R++Y +EG + GLT T++ P++G+ Y
Sbjct: 140 DVLRTRLAAQGEPKIYNNLREAIRTMYKTEGPFVFYKGLTPTVIAIFPYAGLQFSCY 196
>ref|NP_080508.1| kidney mitochondrial carrier protein 1 [Mus musculus].
Length = 291
Score = 72.4 bits (176), Expect = 5e-13
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 6/177 (3%)
Frame = +1
Query: 424 KAFLCGSISGTFSALLFQPLDLLKTRL----QTVQPSAHGSRRVGMLALLLNVVRTESLL 591
K F+ G ++ + P+DL KTRL QT + R GML L+ + R E L
Sbjct: 7 KPFVYGGLASITAECGTFPIDLTKTRLQIQGQTNDANFREIRYRGMLHALMRIGREEGLK 66
Query: 592 GLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFL-RGHPPTALESVILGVGSRSIAGVCMSP 768
L+ G++P+++R I G+ SLK+ + R T L +V+ G+ S I+ +P
Sbjct: 67 ALYSGIAPAMLRQASYGTIKIGTYQSLKRLAVERPEDETLLVNVVCGILSGVISSAIANP 126
Query: 769 ITVIKTRYESGRYGYE-SIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
V+K R ++ + + + SIY EG RGL+ G++ T R A G+ L Y
Sbjct: 127 TDVLKIRMQAQNSAVQGGMIDSFMSIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVY 183
Score = 70.1 bits (170), Expect = 3e-12
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 10/210 (4%)
Frame = +1
Query: 355 RPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGS 534
R A+ +P+D ETL++ V CG +SG S+ + P D+LK R+Q + G
Sbjct: 95 RLAVERPED-----ETLLVNVV-----CGILSGVISSAIANPTDVLKIRMQAQNSAVQG- 143
Query: 535 RRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSL--KQYFLRGHPPTA 708
GM+ +++ + E GLWKG+S + R VG+ +Y + K L G
Sbjct: 144 ---GMIDSFMSIYQQEGTRGLWKGVSLTAQRAAIVVGVEL-PVYDITKKHLILSGLMGDT 199
Query: 709 LESVILGVGSRSIAGVCMS-PITVIKTRYESGR-------YGYESIYSALRSIYHSEGYR 864
+ + L + + G S P+ V++TR + R GY+ L + +EG+
Sbjct: 200 VATHFLSSFTCGLVGALASNPVDVVRTRMMNQRALRDGRCAGYKGTLDCLLQTWKNEGFF 259
Query: 865 GLFSGLTATLLRDAPFSGIYLMFYTRPKTL 954
L+ G LR P++ I+ + Y + K L
Sbjct: 260 ALYKGFWPNWLRLGPWNIIFFLTYEQLKKL 289
>ref|NP_851845.1| mitochondrial carnitine/acylcarnitine carrier protein CACL [Mus
musculus].
Length = 306
Score = 72.0 bits (175), Expect = 7e-13
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 4/173 (2%)
Frame = +1
Query: 430 FLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGM 609
FL G G ++ P D++K RLQ VQ + R G L ++++ ES+LGL+KG+
Sbjct: 5 FLAGCAGGVAGVIVGHPFDIVKVRLQ-VQSTEKPQYR-GTLHCFQSIIKQESVLGLYKGL 62
Query: 610 SPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCMSPITVIKTR 789
++ + FG + + + P L + G + +I V P+ + KTR
Sbjct: 63 GSPLMGLTFINALVFGVQGNTLRALGQDSP---LNQFLAGAAAGAIQCVICCPMELAKTR 119
Query: 790 YESGRYG----YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
+ G Y+ L IY EG RG+ G+ +TLLR+ P G+Y + Y
Sbjct: 120 LQLQAVGPARTYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTY 172
Score = 68.6 bits (166), Expect = 8e-12
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 7/182 (3%)
Frame = +1
Query: 385 GDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLL 564
G+ + L + FL G+ +G ++ P++L KTRLQ +Q G L L+
Sbjct: 81 GNTLRALGQDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQ-LQAVGPARTYKGSLDCLV 139
Query: 565 NVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTAL--ESVILGVGS 738
+ R E L G+ +GM +++R P G+YF + Y + + P L ++L G+
Sbjct: 140 QIYRHEGLRGINRGMVSTLLRETPSFGVYFLT-YDVMTRAMGCEPGDRLLVPKLLLAGGT 198
Query: 739 RSIAG-VCMSPITVIKTRYES----GRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRD 903
I + P+ V+K+R ++ G Y I +R Y +EG++ GL +TLLR
Sbjct: 199 SGITSWLSTYPMDVVKSRLQADGLQGTPRYRGIVDCMRQSYQAEGWQVFTRGLASTLLRA 258
Query: 904 AP 909
P
Sbjct: 259 FP 260
>ref|NP_766165.2| mitochondrial 2-oxodicarboxylate carrier isoform 1 [Mus musculus].
Length = 298
Score = 71.2 bits (173), Expect = 1e-12
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 5/209 (2%)
Frame = +1
Query: 406 MLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTES 585
+L + G +G L PLD++KTR Q + + + RTE
Sbjct: 8 LLHETSRQVAAGGSAGLVEICLMHPLDVVKTRFQVQRSVTDPQSYRTVRGSFQMIFRTEG 67
Query: 586 LLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCMS 765
L G +KG+ P I+ P + F + K++ L +I G+GS V ++
Sbjct: 68 LFGFYKGIIPPILAETPKRAVKFSTFELYKKFLGYMSLSPGLTFLIAGLGSGLTEAVVVN 127
Query: 766 PITVIKTRYESGRYGYE---SIYSALRSIYHSE--GYRGLFSGLTATLLRDAPFSGIYLM 930
P V+K + R ++ S ++ R I E G++GL GLTATL R F+ +Y
Sbjct: 128 PFEVVKVGLQVNRNLFKEQPSTFAYARQIIKKEGLGFQGLNKGLTATLGRHGIFNMVYFG 187
Query: 931 FYTRPKTLCSMTSWMQSLYLLQTSAVGYL 1017
FY K + +S +L L+ +G++
Sbjct: 188 FYHNVKNIIP-SSKDPTLEFLRKFGIGFV 215
>ref|NP_080818.1| solute carrier family 25 member 39 [Mus musculus].
Length = 359
Score = 71.2 bits (173), Expect = 1e-12
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 532 SRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTA- 708
+R G L + +VR E LW G+ ++V VP IYF + LK FL G T+
Sbjct: 102 TRFTGTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKA-FLCGQSLTSD 160
Query: 709 -LESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGLT 885
++ G +R +SP+ +++T+ ++ Y + S++++ G+R L+ G
Sbjct: 161 LYAPMVAGALARMGTVTVVSPLELVRTKLQAQHVSYRELASSVQAAVTQGGWRSLWLGWG 220
Query: 886 ATLLRDAPFSGIYLMFYTRPKTLCSMTSWMQSLYLLQTSAVGYLLDSG 1029
T LRD PFS +Y Y K SW+ L ++VG +G
Sbjct: 221 PTALRDVPFSALYWFNYELVK------SWLSGLRPKDQTSVGISFVAG 262
Score = 53.9 bits (128), Expect = 2e-07
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Frame = +1
Query: 421 VKAFLCGS----------ISGTFSAL----LFQPLDLLKTRLQTVQPSAHGSRRVGMLAL 558
+KAFLCG ++G + + + PL+L++T+LQ + H S R + +
Sbjct: 148 LKAFLCGQSLTSDLYAPMVAGALARMGTVTVVSPLELVRTKLQ----AQHVSYRE-LASS 202
Query: 559 LLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESV----IL 726
+ V LW G P+ +R VP +Y+ + Y L + +L G P SV +
Sbjct: 203 VQAAVTQGGWRSLWLGWGPTALRDVPFSALYWFN-YELVKSWLSGLRPKDQTSVGISFVA 261
Query: 727 GVGSRSIAGVCMSPITVIKTRYESGRYGYESI----------YSALRSIYHSEGYRGLFS 876
G S +A P V+KT+ + E++ + LR I G RGLF+
Sbjct: 262 GGISGMVAATLTLPFDVVKTQRQMSLGAVEAVRVKPPRVDSTWLLLRRIRAESGTRGLFA 321
Query: 877 GLTATLLRDAPFSGIYLMFYTRPKTLCSMTSWMQSL 984
G +++ AP I + Y K+ + Q L
Sbjct: 322 GFLPRIIKAAPSCAIMISTYEFGKSFFQRLNQEQPL 357
>ref|NP_001161448.1| mitochondrial 2-oxodicarboxylate carrier isoform 2 [Mus musculus].
Length = 305
Score = 70.1 bits (170), Expect = 3e-12
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 5/195 (2%)
Frame = +1
Query: 448 SGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVR 627
SG L PLD++KTR Q + + + RTE L G +KG+ P I+
Sbjct: 29 SGLVEICLMHPLDVVKTRFQVQRSVTDPQSYRTVRGSFQMIFRTEGLFGFYKGIIPPILA 88
Query: 628 CVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCMSPITVIKTRYESGRY 807
P + F + K++ L +I G+GS V ++P V+K + R
Sbjct: 89 ETPKRAVKFSTFELYKKFLGYMSLSPGLTFLIAGLGSGLTEAVVVNPFEVVKVGLQVNRN 148
Query: 808 GYE---SIYSALRSIYHSE--GYRGLFSGLTATLLRDAPFSGIYLMFYTRPKTLCSMTSW 972
++ S ++ R I E G++GL GLTATL R F+ +Y FY K + +S
Sbjct: 149 LFKEQPSTFAYARQIIKKEGLGFQGLNKGLTATLGRHGIFNMVYFGFYHNVKNIIP-SSK 207
Query: 973 MQSLYLLQTSAVGYL 1017
+L L+ +G++
Sbjct: 208 DPTLEFLRKFGIGFV 222
>ref|NP_780403.1| graves disease carrier protein homolog [Mus musculus].
Length = 332
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGS--RRVGMLALLLNVVRTESLLG 594
+++FL G I+G + PLD +K LQ AH + +G+L+ L V + E LG
Sbjct: 37 LRSFLAGGIAGCCAKTTVAPLDRVKVLLQ-----AHNRHYKHLGVLSTLRAVPQKEGYLG 91
Query: 595 LWKGMSPSIVRCVPGVGIYFGSLYSLKQYF-----LRGHPPTALESVILGVGSRSIAGVC 759
L+KG ++R P I F + K + + GH + ++ G + A +C
Sbjct: 92 LYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGH----VHRLMAGSMAGMTAVIC 147
Query: 760 MSPITVIKTRYE---SGRYGYESIYSALRSIYHSE-GYRGLFSGLTATLLRDAPFSGI 921
P+ V++ R G + Y I A ++IY E G+ G + GL T+L AP++G+
Sbjct: 148 TYPLDVVRVRLAFQVKGEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGV 205
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,448,219
Number of extensions: 1253476
Number of successful extensions: 5337
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 5223
Number of HSP's successfully gapped: 76
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013183
(1037 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060345.2| solute carrier family 25 member 38 [Homo sapien... 370 e-112
Alignment gi|NP_872362.2| solute carrier family 25 member 45 isoform a [H... 78 1e-14
Alignment gi|NP_112489.3| mitoferrin-2 [Homo sapiens]. 72 6e-13
Alignment gi|NP_114153.1| mitochondrial ornithine transporter 2 [Homo sap... 72 8e-13
Alignment gi|NP_061331.2| solute carrier family 25 member 40 [Homo sapien... 72 8e-13
Alignment gi|NP_001034444.1| mitochondrial carnitine/acylcarnitine carrie... 72 1e-12
Alignment gi|NP_001010875.1| kidney mitochondrial carrier protein 1 [Homo... 70 3e-12
Alignment gi|NP_003942.1| brain mitochondrial carrier protein 1 isoform U... 70 3e-12
Alignment gi|NP_073721.1| brain mitochondrial carrier protein 1 isoform U... 70 3e-12
Alignment gi|NP_000378.1| mitochondrial carnitine/acylcarnitine carrier p... 70 3e-12
>ref|NP_060345.2| solute carrier family 25 member 38 [Homo sapiens].
Length = 304
Score = 370 bits (951), Expect(2) = e-112
Identities = 183/205 (89%), Positives = 195/205 (95%)
Frame = +1
Query: 340 MIQKSRPALLQPQDVGDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQP 519
MIQ SRP+LLQPQDVGD VETLML PV+KAFLCGSISGT S LLFQPLDLLKTRLQT+QP
Sbjct: 1 MIQNSRPSLLQPQDVGDTVETLMLHPVIKAFLCGSISGTCSTLLFQPLDLLKTRLQTLQP 60
Query: 520 SAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHP 699
S HGSRRVGMLA+LL VVRTESLLGLWKGMSPSIVRCVPGVGIYFG+LYSLKQYFLRGHP
Sbjct: 61 SDHGSRRVGMLAVLLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHP 120
Query: 700 PTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSG 879
PTALESV+LGVGSRS+AGVCMSPITVIKTRYESG+YGYESIY+ALRSIYHSEG+RGLFSG
Sbjct: 121 PTALESVMLGVGSRSVAGVCMSPITVIKTRYESGKYGYESIYAALRSIYHSEGHRGLFSG 180
Query: 880 LTATLLRDAPFSGIYLMFYTRPKTL 954
LTATLLRDAPFSGIYLMFY + K +
Sbjct: 181 LTATLLRDAPFSGIYLMFYNQTKNI 205
Score = 52.8 bits (125), Expect(2) = e-112
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 936 HQTKNIVLHDQLDAVLVPVANFSCGIFAG 1022
+QTKNIV HDQ+DA L+P+ NFSCGIFAG
Sbjct: 200 NQTKNIVPHDQVDATLIPITNFSCGIFAG 228
>ref|NP_872362.2| solute carrier family 25 member 45 isoform a [Homo sapiens].
Length = 288
Score = 78.2 bits (191), Expect = 1e-14
Identities = 60/190 (31%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLW 600
V+ F+ G ISG +L P D +K RLQT G++ ++ + R ESLLG +
Sbjct: 3 VEEFVAGWISGALGLVLGHPFDTVKVRLQTQTTYR------GIVDCMVKIYRHESLLGFF 56
Query: 601 KGMSPSIVRCVPGVGIYFGSLYSLKQYFL--------RGHPPTALESVILGVGSRSIAGV 756
KGMS I + FG +YS L R PP+ + + G +
Sbjct: 57 KGMSFPIASIAVVNSVLFG-VYSNTLLVLTATSHQERRAQPPSYMHIFLAGCTGGFLQAY 115
Query: 757 CMSPITVIKTRYE----------SGRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDA 906
C++P +IK R + S Y+ SI+ EG RGLF G A LRD
Sbjct: 116 CLAPFDLIKVRLQNQTEPRAQPGSPPPRYQGPVHCAASIFREEGPRGLFRGAWALTLRDT 175
Query: 907 PFSGIYLMFY 936
P GIY + Y
Sbjct: 176 PTVGIYFITY 185
>ref|NP_112489.3| mitoferrin-2 [Homo sapiens].
Length = 364
Score = 72.4 bits (176), Expect = 6e-13
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 4/198 (2%)
Frame = +1
Query: 355 RPALLQPQDVGDRVETLMLQPVVKAFL-CGSISGTFSALLFQPLDLLKTRLQTVQPSAHG 531
RP + Q D G E L V + G+++G + P+D +KTR+Q++QP
Sbjct: 50 RPPVRQDPDSGPDYEALPAGATVTTHMVAGAVAGILEHCVMYPIDCVKTRMQSLQPDP-A 108
Query: 532 SRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTAL 711
+R +L L ++RTE L +G++ + P +YF LK+ P
Sbjct: 109 ARYRNVLEALWRIIRTEGLWRPMRGLNVTATGAGPAHALYFACYEKLKKTLSDVIHPGGN 168
Query: 712 ESVILGVG---SRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGL 882
+ G + + M+P V+K R + Y + +R+++ +EG +
Sbjct: 169 SHIANGAAGCVATLLHDAAMNPAEVVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRSY 228
Query: 883 TATLLRDAPFSGIYLMFY 936
T L + PF I+ M Y
Sbjct: 229 TTQLTMNVPFQAIHFMTY 246
>ref|NP_114153.1| mitochondrial ornithine transporter 2 [Homo sapiens].
Length = 301
Score = 72.0 bits (175), Expect = 8e-13
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Frame = +1
Query: 439 GSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVG----MLALLLNVVRTESLLGLWKG 606
GS + F+AL P +L+K RLQT+ + + +++ +++ + LG + G
Sbjct: 113 GSFASAFAALALCPTELVKCRLQTMYEMEMSGKIAKSHNTIWSVVKGILKKDGPLGFYHG 172
Query: 607 MSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCM----SPIT 774
+S ++++ VPG +FG + +F G L V L + S +AG+C+ P+
Sbjct: 173 LSSTLLQEVPGYFFFFGGYELSRSFFASGRSKDELGPVHLML-SGGVAGICLWLVVFPVD 231
Query: 775 VIKTRYES-GRYGYESIY-SALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
IK+R + YG ++ + L S+ +EG L+SGL AT++R P +G + Y
Sbjct: 232 CIKSRIQVLSMYGKQAGFIGTLLSVVRNEGIVALYSGLKATMIRAIPANGALFVAY 287
Score = 53.1 bits (126), Expect = 4e-07
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 16/181 (8%)
Frame = +1
Query: 439 GSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMSPS 618
G+ GT L QP D +K ++QT P + G+ L L G +KG P+
Sbjct: 16 GAAGGTACVLTGQPFDTIKVKMQTF-PDLY----KGLTDCFLKTYAQVGLRGFYKGTGPA 70
Query: 619 IVRCVPGVGIYFGSLYSLKQYFLR---GHPPTA----LESVILGVGSRSIAGVCMSPITV 777
++ V + F Y Q F+R G A L++ G + + A + + P +
Sbjct: 71 LMAYVAENSVLF-MCYGFCQQFVRKVAGMDKQAKLSDLQTAAAGSFASAFAALALCPTEL 129
Query: 778 IKTRYE-------SGRY--GYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLM 930
+K R + SG+ + +I+S ++ I +G G + GL++TLL++ P G +
Sbjct: 130 VKCRLQTMYEMEMSGKIAKSHNTIWSVVKGILKKDGPLGFYHGLSSTLLQEVP--GYFFF 187
Query: 931 F 933
F
Sbjct: 188 F 188
Score = 48.5 bits (114), Expect = 1e-05
Identities = 25/78 (32%), Positives = 46/78 (58%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLW 600
V L G ++G L+ P+D +K+R+Q + S +G ++ G + LL+VVR E ++ L+
Sbjct: 210 VHLMLSGGVAGICLWLVVFPVDCIKSRIQVL--SMYG-KQAGFIGTLLSVVRNEGIVALY 266
Query: 601 KGMSPSIVRCVPGVGIYF 654
G+ +++R +P G F
Sbjct: 267 SGLKATMIRAIPANGALF 284
>ref|NP_061331.2| solute carrier family 25 member 40 [Homo sapiens].
Length = 338
Score = 72.0 bits (175), Expect = 8e-13
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Frame = +1
Query: 544 GMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLR---GHPPTALE 714
G L ++R E + LW G+ P++V VP IYF + Y LR G T +
Sbjct: 86 GTLDAFFKIIRNEGIKSLWSGLPPTLVMAVPATVIYF-TCYDQLSALLRSKLGENETCIP 144
Query: 715 SVILGVGSRSIAGVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGLTATL 894
++ G+ +R A +SP+ +I+T+ +S ++ Y ++ + +G+ L+ G T+
Sbjct: 145 -IVAGIVARFGAVTVISPLELIRTKMQSKKFSYVELHRFVSKKVSEDGWISLWRGWAPTV 203
Query: 895 LRDAPFSGIYLMFY-TRPKTLCSMTSWMQSLYLL 993
LRD PFS +Y Y K LC + + +++
Sbjct: 204 LRDVPFSAMYWYNYEILKKWLCEKSGLYEPTFMI 237
Score = 66.6 bits (161), Expect = 4e-11
Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 18/219 (8%)
Frame = +1
Query: 334 PPMIQKSRPALLQPQDVGDRVETLMLQPVVKAFLC-----GSISGTFSALLFQPLDLLKT 498
PP + + PA + D++ L+ + + C G ++ + + PL+L++T
Sbjct: 108 PPTLVMAVPATVIYFTCYDQLSALLRSKLGENETCIPIVAGIVARFGAVTVISPLELIRT 167
Query: 499 RLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQ 678
++Q+ + S V + + V + + LW+G +P+++R VP +Y+ + LK+
Sbjct: 168 KMQSKKFSY-----VELHRFVSKKVSEDGWISLWRGWAPTVLRDVPFSAMYWYNYEILKK 222
Query: 679 YFLRG---HPPTALESVILGVGSRSIAGVCMSPITVIKTRYESGRYGYES---------- 819
+ + PT + + G S S A V P V+KT+ ++ + YES
Sbjct: 223 WLCEKSGLYEPTFMINFTSGALSGSFAAVATLPFDVVKTQKQTQLWTYESHKISMPLHMS 282
Query: 820 IYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
+ +++I G+ GLFSGL L++ AP I + Y
Sbjct: 283 TWIIMKNIVAKNGFSGLFSGLIPRLIKIAPACAIMISTY 321
>ref|NP_001034444.1| mitochondrial carnitine/acylcarnitine carrier protein CACL [Homo
sapiens].
Length = 303
Score = 71.6 bits (174), Expect = 1e-12
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 6/175 (3%)
Frame = +1
Query: 430 FLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGM 609
FL G G L+ P D +K RLQ S + G L ++++ ES+LGL+KG+
Sbjct: 5 FLAGCAGGVAGVLVGHPFDTVKVRLQV--QSVEKPQYRGTLHCFKSIIKQESVLGLYKGL 62
Query: 610 SPSIVRCVPGVGIYFGSLYSLKQYFLR--GHPPTALESVILGVGSRSIAGVCMSPITVIK 783
++ G+ ++ ++ LR GH + L + G + +I V P+ + K
Sbjct: 63 GSPLM----GLTFINALVFGVQGNTLRALGHD-SPLNQFLAGAAAGAIQCVICCPMELAK 117
Query: 784 TRYESGRYG----YESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
TR + G Y+ L IY EG RG+ G+ +TLLR+ P G+Y + Y
Sbjct: 118 TRLQLQDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTY 172
Score = 65.9 bits (159), Expect = 6e-11
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 7/182 (3%)
Frame = +1
Query: 385 GDRVETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLL 564
G+ + L + FL G+ +G ++ P++L KTRLQ +Q + G L L
Sbjct: 81 GNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQ-LQDAGPARTYKGSLDCLA 139
Query: 565 NVVRTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTAL---ESVILGVG 735
+ E L G+ +GM +++R P G+YF + +L + L P L + ++ G
Sbjct: 140 QIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRA-LGCEPGDRLLVPKLLLAGGT 198
Query: 736 SRSIAGVCMSPITVIKTRYES----GRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRD 903
S ++ + P+ V+K+R ++ G Y I + Y +EG+R GL +TLLR
Sbjct: 199 SGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRA 258
Query: 904 AP 909
P
Sbjct: 259 FP 260
>ref|NP_001010875.1| kidney mitochondrial carrier protein 1 [Homo sapiens].
Length = 291
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 10/184 (5%)
Frame = +1
Query: 433 LCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGMS 612
+CG +SG S+ + P D+LK R+Q + G GM+ +N+ + E GLWKG+S
Sbjct: 111 ICGILSGVISSTIANPTDVLKIRMQAQSNTIQG----GMIGNFMNIYQQEGTRGLWKGVS 166
Query: 613 PSIVRCVPGVGIYFGSLYSL--KQYFLRGHPPTALESVILGVGSRSIAGVCMS-PITVIK 783
+ R VG+ +Y + K L G + + L + +AG S P+ V++
Sbjct: 167 LTAQRAAIVVGVEL-PVYDITKKHLILSGLMGDTVYTHFLSSFTCGLAGALASNPVDVVR 225
Query: 784 TRYESGRY-------GYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFYTR 942
TR + R GY L + +EG+ L+ G LR P++ I+ + Y +
Sbjct: 226 TRMMNQRVLRDGRCSGYTGTLDCLLQTWKNEGFFALYKGFWPNWLRLGPWNIIFFVTYEQ 285
Query: 943 PKTL 954
K L
Sbjct: 286 LKKL 289
Score = 68.6 bits (166), Expect = 9e-12
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 6/177 (3%)
Frame = +1
Query: 424 KAFLCGSISGTFSALLFQPLDLLKTRL----QTVQPSAHGSRRVGMLALLLNVVRTESLL 591
K F+ G ++ + P+DL KTRL QT R GML L+ + R E L
Sbjct: 7 KPFVYGGLASITAECGTFPIDLTKTRLQIQGQTNDAKFKEIRYRGMLHALVRIGREEGLK 66
Query: 592 GLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFL-RGHPPTALESVILGVGSRSIAGVCMSP 768
L+ G++P+++R I G+ SLK+ F+ R T +VI G+ S I+ +P
Sbjct: 67 ALYSGIAPAMLRQASYGTIKIGTYQSLKRLFIERPEDETLPINVICGILSGVISSTIANP 126
Query: 769 ITVIKTRYESGRYGYE-SIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
V+K R ++ + + +IY EG RGL+ G++ T R A G+ L Y
Sbjct: 127 TDVLKIRMQAQSNTIQGGMIGNFMNIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVY 183
>ref|NP_003942.1| brain mitochondrial carrier protein 1 isoform UCP5L [Homo sapiens].
Length = 325
Score = 70.1 bits (170), Expect = 3e-12
Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Frame = +1
Query: 424 KAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGS----RRVGMLALLLNVVRTESLL 591
K F+ G ++ + P+DL KTRLQ S + GM L + + E +L
Sbjct: 42 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDARFKEIKYRGMFHALFRICKEEGVL 101
Query: 592 GLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFL-RGHPPTALESVILGVGSRSIAGVCMSP 768
L+ G++P+++R I G SLK+ F+ R T L ++I GV S I+ +P
Sbjct: 102 ALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANP 161
Query: 769 ITVIKTRYES-GRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
V+K R ++ G S+ + IY EG RGL+ G+ T R A G+ L Y
Sbjct: 162 TDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVY 218
Score = 64.7 bits (156), Expect = 1e-10
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 9/196 (4%)
Frame = +1
Query: 394 VETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVV 573
VE L + ++ +CG +SG S+ + P D+LK R+Q GS M+ +++
Sbjct: 133 VERLEDETLLINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGS----MIGSFIDIY 188
Query: 574 RTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSL--KQYFLRGHPPTALESVILGVGSRSI 747
+ E GLW+G+ P+ R VG+ +Y + K L G + + + + +
Sbjct: 189 QQEGTRGLWRGVVPTAQRAAIVVGVEL-PVYDITKKHLILSGMMGDTILTHFVSSFTCGL 247
Query: 748 AGVCMS-PITVIKTRYESGR--YGYESIY----SALRSIYHSEGYRGLFSGLTATLLRDA 906
AG S P+ V++TR + R G+ +Y + ++ EG+ L+ G LR
Sbjct: 248 AGALASNPVDVVRTRMMNQRAIVGHVDLYKGTVDGILKMWKHEGFFALYKGFWPNWLRLG 307
Query: 907 PFSGIYLMFYTRPKTL 954
P++ I+ + Y + K L
Sbjct: 308 PWNIIFFITYEQLKRL 323
>ref|NP_073721.1| brain mitochondrial carrier protein 1 isoform UCP5S [Homo sapiens].
Length = 322
Score = 70.1 bits (170), Expect = 3e-12
Identities = 55/177 (31%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Frame = +1
Query: 424 KAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGS----RRVGMLALLLNVVRTESLL 591
K F+ G ++ + P+DL KTRLQ S + GM L + + E +L
Sbjct: 39 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDARFKEIKYRGMFHALFRICKEEGVL 98
Query: 592 GLWKGMSPSIVRCVPGVGIYFGSLYSLKQYFL-RGHPPTALESVILGVGSRSIAGVCMSP 768
L+ G++P+++R I G SLK+ F+ R T L ++I GV S I+ +P
Sbjct: 99 ALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANP 158
Query: 769 ITVIKTRYES-GRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLMFY 936
V+K R ++ G S+ + IY EG RGL+ G+ T R A G+ L Y
Sbjct: 159 TDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVY 215
Score = 64.7 bits (156), Expect = 1e-10
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 9/196 (4%)
Frame = +1
Query: 394 VETLMLQPVVKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVV 573
VE L + ++ +CG +SG S+ + P D+LK R+Q GS M+ +++
Sbjct: 130 VERLEDETLLINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGS----MIGSFIDIY 185
Query: 574 RTESLLGLWKGMSPSIVRCVPGVGIYFGSLYSL--KQYFLRGHPPTALESVILGVGSRSI 747
+ E GLW+G+ P+ R VG+ +Y + K L G + + + + +
Sbjct: 186 QQEGTRGLWRGVVPTAQRAAIVVGVEL-PVYDITKKHLILSGMMGDTILTHFVSSFTCGL 244
Query: 748 AGVCMS-PITVIKTRYESGR--YGYESIY----SALRSIYHSEGYRGLFSGLTATLLRDA 906
AG S P+ V++TR + R G+ +Y + ++ EG+ L+ G LR
Sbjct: 245 AGALASNPVDVVRTRMMNQRAIVGHVDLYKGTVDGILKMWKHEGFFALYKGFWPNWLRLG 304
Query: 907 PFSGIYLMFYTRPKTL 954
P++ I+ + Y + K L
Sbjct: 305 PWNIIFFITYEQLKRL 320
>ref|NP_000378.1| mitochondrial carnitine/acylcarnitine carrier protein [Homo
sapiens].
Length = 301
Score = 70.1 bits (170), Expect = 3e-12
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 10/182 (5%)
Frame = +1
Query: 421 VKAFLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRV--GMLALLLNVVRTESLLG 594
+K L G G + PLD +K RLQT PS G + G + E + G
Sbjct: 11 LKNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGITG 70
Query: 595 LWKGMSPSIVRCVPGVGI-YFGSLYSLKQYFLRGHPPTALE-------SVILGVGSRSIA 750
L++GM+ I+ P + +FG + L + + HP L ++ GV + I
Sbjct: 71 LYRGMAAPIIGVTPMFAVCFFG--FGLGKKLQQKHPEDVLSYPQLFAAGMLSGVFTTGIM 128
Query: 751 GVCMSPITVIKTRYESGRYGYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFSGIYLM 930
+++ + SG Y + +Y G RG++ G TL+RD P SG+Y M
Sbjct: 129 TPGERIKCLLQIQASSGESKYTGTLDCAKKLYQEFGIRGIYKGTVLTLMRDVPASGMYFM 188
Query: 931 FY 936
Y
Sbjct: 189 TY 190
Score = 56.2 bits (134), Expect = 5e-08
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 10/170 (5%)
Frame = +1
Query: 430 FLCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRVGMLALLLNVVRTESLLGLWKGM 609
F G +SG F+ + P + +K LQ +Q S+ S+ G L + + + G++KG
Sbjct: 114 FAAGMLSGVFTTGIMTPGERIKCLLQ-IQASSGESKYTGTLDCAKKLYQEFGIRGIYKGT 172
Query: 610 SPSIVRCVPGVGIYFGSLYSLKQYFL-RGHPPTALESVILGVGSRSIAGV----CMSPIT 774
+++R VP G+YF + LK F G + L + + V IAG+ P
Sbjct: 173 VLTLMRDVPASGMYFMTYEWLKNIFTPEGKRVSELSAPRILVAG-GIAGIFNWAVAIPPD 231
Query: 775 VIKTRYES---GRY--GYESIYSALRSIYHSEGYRGLFSGLTATLLRDAP 909
V+K+R+++ G+Y G+ + LR + EG L+ G A ++R P
Sbjct: 232 VLKSRFQTAPPGKYPNGFRDV---LRELIRDEGVTSLYKGFNAVMIRAFP 278
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,254,140
Number of extensions: 1508088
Number of successful extensions: 6403
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 6278
Number of HSP's successfully gapped: 98
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013183
(1037 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 807 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 807 bits (407), Expect = 0.0
Identities = 407/407 (100%)
Strand = Plus / Plus
Query: 2 aaatccagctgttctatccagttcctcccgctttctccacctcccggtcgcacccaggct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26291259 aaatccagctgttctatccagttcctcccgctttctccacctcccggtcgcacccaggct 26291318
Query: 62 aatattctcaagtcatcaagtcggcagcagggcatgatgggcaggacagcagggccgcag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26291319 aatattctcaagtcatcaagtcggcagcagggcatgatgggcaggacagcagggccgcag 26291378
Query: 122 agtctgcgaagcgagtgaagagaggcgcctggagcacacaagggcagtgggctcgcaggc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26291379 agtctgcgaagcgagtgaagagaggcgcctggagcacacaagggcagtgggctcgcaggc 26291438
Query: 182 cgggacccctgactggcgcagactacaaagaggcccccgcagtagaacgcgtcgcctggc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26291439 cgggacccctgactggcgcagactacaaagaggcccccgcagtagaacgcgtcgcctggc 26291498
Query: 242 taccgccatcgagttgtcttctccaggacctccagggtcggacctgagttcccacggtcg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26291499 taccgccatcgagttgtcttctccaggacctccagggtcggacctgagttcccacggtcg 26291558
Query: 302 gcaacccgggcccagtacactcgcaggcctcccctccaatgatccagaagtcacgcccgg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26291559 gcaacccgggcccagtacactcgcaggcctcccctccaatgatccagaagtcacgcccgg 26291618
Query: 362 cgctgctgcagcctcaggatgttggagacagagtggaaactcttatg 408
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26291619 cgctgctgcagcctcaggatgttggagacagagtggaaactcttatg 26291665
Score = 315 bits (159), Expect = 3e-83
Identities = 173/180 (96%)
Strand = Plus / Plus
Query: 616 tccattgtcaggtgtgtccctggagttggaatctacttcggctcgctctactctttgaag 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26299539 tccattgtcaggtgtgtccctggagttggaatctacttcggctcgctctactctttgaag 26299598
Query: 676 cagtacttcctgcgaggccannnnnnnaccgccctggagtcagttatcctgggggtgggc 735
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 26299599 cagtacttcctgcgaggccaccccccgaccgccctggagtcagttatcctgggggtgggc 26299658
Query: 736 tcccgctcaattgcaggggtctgcatgtcacccatcactgtgatcaagacacggtatgag 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26299659 tcccgctcaattgcaggggtctgcatgtcacccatcactgtgatcaagacacggtatgag 26299718
Score = 315 bits (159), Expect = 3e-83
Identities = 169/171 (98%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 794 agagtgggcggtacggctatgagagcatctactcagccctgaggagcatctatcacagcg 853
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26299972 agagtggacggtacggctatgagagcatctactcagccctgaggagcatctatcacagcg 26300031
Query: 854 aggggtaccggggcctcttcagtggcctgacagcaacactccttcgtgacgccccctttt 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26300032 aggggtaccggggcctcttcagtggcctgacagcaacactccttcgtgacgccccctttt 26300091
Query: 914 ctggaatctatctgatgttttac-accagaccaaaaacattgtgctccatg 963
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 26300092 ctggaatctatctgatgttttacaaccagaccaaaaacattgtgctccatg 26300142
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 408 gttgcagccagtggtcaaagctttcttatgtggctccatcagtgggactttctccgccct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26297991 gttgcagccagtggtcaaagctttcttatgtggctccatcagtgggactttctccgccct 26298050
Query: 468 ccttttccaacccctggatctcctcaaaacgcgcctgcagactgtccagccctcagccca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26298051 ccttttccaacccctggatctcctcaaaacgcgcctgcagactgtccagccctcagccca 26298110
Query: 528 tgg 530
|||
Sbjct: 26298111 tgg 26298113
Score = 163 bits (82), Expect = 2e-37
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 530 gatccagacgcgttgggatgttggctttgctcttgaatgtggttcgcacagagagtctgc 589
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26298827 gatccagacgcattgggatgttggctttgctcttgaatgtggttcgcacagagagtctgc 26298886
Query: 590 tgggcctttggaaagggatgtctcct 615
||||||||||||||||||||||||||
Sbjct: 26298887 tgggcctttggaaagggatgtctcct 26298912
Score = 127 bits (64), Expect = 1e-26
Identities = 74/76 (97%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 963 gaccagttggatgcagtccttgtacctgttgcaaacttcagctgtgggatatttgctgg- 1021
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26301697 gaccagttggatgcagtccttgtacctgttgcaaacttcagctgtgggatatttgctggt 26301756
Query: 1022 attctggcctccctgg 1037
||||||||||| ||||
Sbjct: 26301757 attctggcctcactgg 26301772
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,157,688
Number of extensions: 132
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 6
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)