Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013185
(1086 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033183.1| nucleosome assembly protein 1-like 4 [Bos ta... 556 e-164
Alignment gi|NP_001092685.1| nucleosome assembly protein 1-like 1 [Bos ta... 384 e-112
Alignment gi|XP_877406.1| PREDICTED: nucleosome assembly protein 1-like 1... 384 e-112
Alignment gi|XP_002694266.1| PREDICTED: nucleosome assembly protein 1-lik... 384 e-112
Alignment gi|XP_869379.2| PREDICTED: nucleosome assembly protein 1-like 1... 383 e-112
Alignment gi|XP_001250602.1| PREDICTED: rCG48740-like [Bos taurus]. 383 e-112
Alignment gi|XP_870151.2| PREDICTED: nucleosome assembly protein 1-like 1... 383 e-112
Alignment gi|XP_002688363.1| PREDICTED: nucleosome assembly protein 1-lik... 382 e-111
Alignment gi|XP_001249945.1| PREDICTED: nucleosome assembly protein 1-lik... 382 e-110
Alignment gi|XP_002707858.1| PREDICTED: nucleosome assembly protein 1-lik... 377 e-109
>ref|NP_001033183.1| nucleosome assembly protein 1-like 4 [Bos taurus].
Length = 386
Score = 556 bits (1434), Expect(2) = e-164
Identities = 275/318 (86%), Positives = 290/318 (91%)
Frame = +2
Query: 77 MADNSFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLP 256
MADNSFSDGVPS+SLEAAKNASNTEKLTDQVMQNPQVLAALQERLD+VSHTPSSYIETLP
Sbjct: 1 MADNSFSDGVPSDSLEAAKNASNTEKLTDQVMQNPQVLAALQERLDNVSHTPSSYIETLP 60
Query: 257 KAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAX 436
KAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDA
Sbjct: 61 KAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAE 120
Query: 437 XXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEY 616
DKLAGD+K+K VI P P+GIPEFWFTIFRNVDMLSELVQEY
Sbjct: 121 SEWHSETEEEDKLAGDMKNKAVIAEKEAAAAEEPAPRGIPEFWFTIFRNVDMLSELVQEY 180
Query: 617 DEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFE 796
DEPILKHLQDIKVKFS+PGQPMSFVLEFHFEP+DYF+N VLTKTYKMKSEPDKADPFSFE
Sbjct: 181 DEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPDDYFTNPVLTKTYKMKSEPDKADPFSFE 240
Query: 797 GPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASG 976
GPEIVDCDGC IDWKK +NVTVKT++KKQKHKGRGTVRTITKQVP+DSF +FFSPL+ASG
Sbjct: 241 GPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNDSFFNFFSPLRASG 300
Query: 977 DGESLDEDSEFTLASDLK 1030
DGESLDEDSEFTLASD +
Sbjct: 301 DGESLDEDSEFTLASDFE 318
Score = 40.0 bits (92), Expect(2) = e-164
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHF RERIV RAVLYFTG
Sbjct: 318 EIGHFFRERIVPRAVLYFTG 337
>ref|NP_001092685.1| nucleosome assembly protein 1-like 1 [Bos taurus].
Length = 391
Score = 384 bits (985), Expect(2) = e-112
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K + +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKVEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
SE LA+D +
Sbjct: 316 SEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-112
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_877406.1| PREDICTED: nucleosome assembly protein 1-like 1 isoform 4 [Bos
taurus].
Length = 391
Score = 384 bits (985), Expect(2) = e-112
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K + +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKVEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
SE LA+D +
Sbjct: 316 SEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-112
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_002694266.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Bos taurus].
Length = 370
Score = 384 bits (985), Expect(2) = e-112
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K + +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKVEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
SE LA+D +
Sbjct: 316 SEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-112
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_869379.2| PREDICTED: nucleosome assembly protein 1-like 1 isoform 6 [Bos
taurus].
Length = 391
Score = 383 bits (984), Expect(2) = e-112
Identities = 190/310 (61%), Positives = 237/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT QVMQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQVMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K + +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKVEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSF LEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFALEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
SE LA+D +
Sbjct: 316 SEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-112
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_001250602.1| PREDICTED: rCG48740-like [Bos taurus].
Length = 383
Score = 383 bits (984), Expect(2) = e-112
Identities = 190/310 (61%), Positives = 237/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT QVMQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQVMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K + +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKVEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSF LEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFALEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
SE LA+D +
Sbjct: 316 SEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-112
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_870151.2| PREDICTED: nucleosome assembly protein 1-like 1 isoform 1 [Bos
taurus].
Length = 370
Score = 383 bits (984), Expect(2) = e-112
Identities = 190/310 (61%), Positives = 237/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT QVMQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQVMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K + +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKVEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSF LEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFALEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
SE LA+D +
Sbjct: 316 SEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-112
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_002688363.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Bos taurus].
Length = 391
Score = 382 bits (981), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 237/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K + +PKGIPEFW TIF+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKVEDEKKDEEKE-DPKGIPEFWLTIFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKV FS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVNFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
SE LA+D +
Sbjct: 316 SEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_001249945.1| PREDICTED: nucleosome assembly protein 1-like 1 [Bos taurus].
Length = 391
Score = 382 bits (980), Expect(2) = e-110
Identities = 189/317 (59%), Positives = 236/317 (74%), Gaps = 1/317 (0%)
Frame = +2
Query: 83 DNSFSDGVPSESLEAAKNAS-NTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPK 259
D D E E + + +LT Q+MQNPQ+LAALQERLD + TP+ Y+E+LP+
Sbjct: 13 DQDLDDAEEVEEEETGEETNIKARQLTVQMMQNPQILAALQERLDGLVETPTGYVESLPR 72
Query: 260 AVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXX 439
VKRR+NALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 73 VVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEEC 132
Query: 440 XXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYD 619
D+++ ++K+K + +PKGIPEFW T+F+NVD+LS++VQE+D
Sbjct: 133 EWKPDEE--DEISEELKEKAKVEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHD 189
Query: 620 EPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEG 799
EPILKHL+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSFEG
Sbjct: 190 EPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFEG 249
Query: 800 PEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGD 979
PE + C GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +D F +FF+P +
Sbjct: 250 PEFMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDCFCNFFAPPEVPES 309
Query: 980 GESLDEDSEFTLASDLK 1030
G+ LD+DSE LA+D +
Sbjct: 310 GD-LDDDSEAILAADFE 325
Score = 36.2 bits (82), Expect(2) = e-110
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFL E I+ R+VLYFTG
Sbjct: 325 EIGHFLHEHIIPRSVLYFTG 344
>ref|XP_002707858.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Bos taurus].
Length = 391
Score = 377 bits (968), Expect(2) = e-109
Identities = 188/317 (59%), Positives = 234/317 (73%), Gaps = 1/317 (0%)
Frame = +2
Query: 83 DNSFSDGVPSESLEAAKNAS-NTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPK 259
D D E E + + +LT Q+MQNPQ+LAALQERLD + TP+ Y+E+LP+
Sbjct: 13 DQDLDDAEEVEEEETGEETNIKARQLTVQMMQNPQILAALQERLDGLVETPTGYVESLPR 72
Query: 260 AVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXX 439
VKRR+NALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 73 VVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEEC 132
Query: 440 XXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYD 619
D+++ ++K+K I +PKGIPE W T+F+NVD+LS++VQE+D
Sbjct: 133 EWKPDEE--DEISEELKEKAKIEDEKKDEEKE-DPKGIPEVWLTVFKNVDLLSDMVQEHD 189
Query: 620 EPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEG 799
EPIL HL+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSFEG
Sbjct: 190 EPILXHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFEG 249
Query: 800 PEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGD 979
PE + C GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +D F +FF+P +
Sbjct: 250 PEFMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDCFCNFFAPPEVPES 309
Query: 980 GESLDEDSEFTLASDLK 1030
G+ LD+DSE LA+D +
Sbjct: 310 GD-LDDDSEAILAADFE 325
Score = 36.2 bits (82), Expect(2) = e-109
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFL E I+ R+VLYFTG
Sbjct: 325 EIGHFLHEHIIPRSVLYFTG 344
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,750,422
Number of extensions: 827297
Number of successful extensions: 3248
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3222
Number of HSP's successfully gapped: 26
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013185
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013185
(1086 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540791.2| PREDICTED: similar to nucleosome assembly prote... 566 e-167
Alignment gi|XP_864714.1| PREDICTED: similar to Nucleosome assembly prote... 383 e-111
Alignment gi|XP_864616.1| PREDICTED: similar to Nucleosome assembly prote... 383 e-111
Alignment gi|XP_864595.1| PREDICTED: similar to Nucleosome assembly prote... 383 e-111
Alignment gi|XP_851940.1| PREDICTED: similar to Nucleosome assembly prote... 383 e-111
Alignment gi|XP_864753.1| PREDICTED: similar to Nucleosome assembly prote... 383 e-111
Alignment gi|XP_864731.1| PREDICTED: similar to Nucleosome assembly prote... 383 e-111
Alignment gi|XP_864630.1| PREDICTED: similar to Nucleosome assembly prote... 383 e-111
Alignment gi|XP_864660.1| PREDICTED: similar to Nucleosome assembly prote... 377 e-110
Alignment gi|XP_864647.1| PREDICTED: similar to Nucleosome assembly prote... 363 e-106
>ref|XP_540791.2| PREDICTED: similar to nucleosome assembly protein 1-like 4
(predicted) [Canis familiaris].
Length = 386
Score = 567 bits (1460), Expect(2) = e-167
Identities = 280/318 (88%), Positives = 294/318 (92%)
Frame = +2
Query: 77 MADNSFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLP 256
MADNSFSDGVPS++LEAAKNASNTEKLTDQVMQNPQVLAALQERLD+V+HTPSSYIETLP
Sbjct: 1 MADNSFSDGVPSDALEAAKNASNTEKLTDQVMQNPQVLAALQERLDNVAHTPSSYIETLP 60
Query: 257 KAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAX 436
KAVKRRINALKQLQV+CAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDA
Sbjct: 61 KAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAE 120
Query: 437 XXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEY 616
DKLAGDVK+KVVI PNPKGIPEFWFTIFRNVDMLSELVQEY
Sbjct: 121 SEWHSENEEEDKLAGDVKNKVVIAEKEAATAEEPNPKGIPEFWFTIFRNVDMLSELVQEY 180
Query: 617 DEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFE 796
DEPILKHLQDIKVKFS+PGQPMSFVLEFHFEPNDYF+NSVLTKTYKMKSEPDKADPFSFE
Sbjct: 181 DEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNSVLTKTYKMKSEPDKADPFSFE 240
Query: 797 GPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASG 976
GPEIVDCDGCAIDWKK +NVTVKT++KKQKHKGRGTVRTITKQVP+DSF +FFSPLKASG
Sbjct: 241 GPEIVDCDGCAIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNDSFFNFFSPLKASG 300
Query: 977 DGESLDEDSEFTLASDLK 1030
DGESLDEDSEFTLASD +
Sbjct: 301 DGESLDEDSEFTLASDFE 318
Score = 40.0 bits (92), Expect(2) = e-167
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHF RERIV RAVLYFTG
Sbjct: 318 EIGHFFRERIVPRAVLYFTG 337
>ref|XP_864714.1| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1
related protein) (hNRP) isoform 8 [Canis familiaris].
Length = 391
Score = 383 bits (983), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_864616.1| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1
related protein) (hNRP) isoform 4 [Canis familiaris].
Length = 391
Score = 383 bits (983), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_864595.1| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1
related protein) (hNRP) isoform 3 [Canis familiaris].
Length = 391
Score = 383 bits (983), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_851940.1| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1
related protein) (hNRP) isoform 2 [Canis familiaris].
Length = 383
Score = 383 bits (983), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_864753.1| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1
related protein) (hNRP) isoform 10 [Canis familiaris].
Length = 368
Score = 383 bits (983), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_864731.1| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1
related protein) (hNRP) isoform 9 [Canis familiaris].
Length = 368
Score = 383 bits (983), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_864630.1| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1
related protein) (hNRP) isoform 5 [Canis familiaris].
Length = 368
Score = 383 bits (983), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_864660.1| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1
related protein) (hNRP) isoform 7 [Canis familiaris].
Length = 397
Score = 377 bits (968), Expect(2) = e-110
Identities = 189/314 (60%), Positives = 236/314 (75%), Gaps = 8/314 (2%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAG----DVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPI 628
++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPI
Sbjct: 140 DEISVSTNFNEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPI 198
Query: 629 LKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEI 808
LKHL+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI
Sbjct: 199 LKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEI 258
Query: 809 VDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGES 988
+ C GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+
Sbjct: 259 MGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD- 317
Query: 989 LDEDSEFTLASDLK 1030
LD+D+E LA+D +
Sbjct: 318 LDDDAEAILAADFE 331
Score = 40.0 bits (92), Expect(2) = e-110
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 331 EIGHFLRERIIPRSVLYFTG 350
>ref|XP_864647.1| PREDICTED: similar to Nucleosome assembly protein 1-like 1 (NAP-1
related protein) (hNRP) isoform 6 [Canis familiaris].
Length = 394
Score = 363 bits (933), Expect(2) = e-106
Identities = 184/314 (58%), Positives = 233/314 (74%), Gaps = 8/314 (2%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAG----DVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPI 628
++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPI
Sbjct: 140 DEISVSTNFNEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPI 198
Query: 629 LKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEI 808
LKHL+DIKVKFS+ GQPM ++FHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI
Sbjct: 199 LKHLKDIKVKFSDAGQPM---VKFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEI 255
Query: 809 VDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGES 988
+ C GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+
Sbjct: 256 MGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD- 314
Query: 989 LDEDSEFTLASDLK 1030
LD+D+E LA+D +
Sbjct: 315 LDDDAEAILAADFE 328
Score = 40.0 bits (92), Expect(2) = e-106
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 328 EIGHFLRERIIPRSVLYFTG 347
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,374,786
Number of extensions: 854364
Number of successful extensions: 3441
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3423
Number of HSP's successfully gapped: 37
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013185
(1086 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126438.1| PREDICTED: nucleosome assembly protein 1-lik... 383 e-112
Alignment gi|XP_003135233.1| PREDICTED: nucleosome assembly protein 1-lik... 210 1e-56
Alignment gi|XP_003135234.1| PREDICTED: nucleosome assembly protein 1-lik... 187 1e-48
Alignment gi|XP_003360439.1| PREDICTED: nucleosome assembly protein 1-lik... 159 3e-40
Alignment gi|NP_001193822.1| nucleosome assembly protein 1-like 5 [Sus sc... 58 8e-09
Alignment gi|XP_003122251.2| PREDICTED: protein SET-like isoform 1 [Sus s... 55 5e-08
>ref|XP_003126438.1| PREDICTED: nucleosome assembly protein 1-like 1 [Sus scrofa].
Length = 391
Score = 383 bits (983), Expect(2) = e-112
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-112
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|XP_003135233.1| PREDICTED: nucleosome assembly protein 1-like 2-like [Sus scrofa].
Length = 389
Score = 210 bits (535), Expect(2) = 1e-56
Identities = 122/322 (37%), Positives = 176/322 (54%), Gaps = 38/322 (11%)
Frame = +2
Query: 149 EKLTDQVMQNPQVLAALQERLDSVS--HTPSSYIETLPKAVKRRINALKQLQVKCAHIEA 322
E+ +Q P + AA+Q ++ +IE+LP AVK R+ ALK+LQVK A +EA
Sbjct: 3 EEFGEQGAAGPLIGAAVQASPQALMGYSLDEDFIESLPLAVKYRVYALKKLQVKSAGLEA 62
Query: 323 KFYEEVHDLERKYA---------------ALYQPLFD------KRREFITGDVEPT---- 427
K+ E H +ERK+A ALY+P + K ++ +VE
Sbjct: 63 KYLREFHSIERKFAGIYGPLLEKRRQIINALYEPTKEECEVKSKAEDYDANEVEDDCNAQ 122
Query: 428 -----------DAXXXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTI 574
D ++ G+ + P GIP FW
Sbjct: 123 MQGPEENPEYEDLEEYCEQDFEDMEEHFGEYEG----LQGHNVDGEKEEPTGIPNFWLMA 178
Query: 575 FRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYK 754
+NV+ +S L+Q+YDEPILK L+D+KVKFS+P +P SF LEFHFEPNDYF+N VLTKTY
Sbjct: 179 LKNVEEVSPLIQKYDEPILKLLRDMKVKFSKPNEPPSFTLEFHFEPNDYFTNEVLTKTYT 238
Query: 755 MKSEPDKADPFSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPS 934
+KS+ +DP F G + C+GC IDWK+ +N+TV+ + KKQ+HK G +RT+T+++P
Sbjct: 239 LKSKLHYSDPHPFRGSAVEHCNGCKIDWKEGKNITVQRVLKKQRHKFWGLMRTVTQEIPR 298
Query: 935 DSFLHFFSPLKASGDGESLDED 1000
+SF +FFS L+ D + +ED
Sbjct: 299 ESFFNFFSALRWGLDADEDEED 320
Score = 28.1 bits (61), Expect(2) = 1e-56
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 1030 IGHFLRERIVXRAVLYFTG 1086
I H LR ++ RAVLYFTG
Sbjct: 323 IAHTLRTFVIPRAVLYFTG 341
>ref|XP_003135234.1| PREDICTED: nucleosome assembly protein 1-like 2-like [Sus scrofa].
Length = 473
Score = 187 bits (476), Expect(2) = 1e-48
Identities = 83/154 (53%), Positives = 115/154 (74%)
Frame = +2
Query: 539 NPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPND 718
+PKGIP+FW T+ +NVD L+ L+++YDEPILK L DIKVK S+PG+P+SF LEFHF+PN+
Sbjct: 249 DPKGIPDFWLTVLKNVDTLTPLIKKYDEPILKLLTDIKVKLSDPGEPLSFTLEFHFKPNE 308
Query: 719 YFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGR 898
YF N +LTKTY +KS DP + G I C GC IDW + +NVT+KT++KKQKH+
Sbjct: 309 YFKNDLLTKTYVLKSRLAYYDPHPYRGTAIEYCIGCKIDWNEGKNVTLKTIKKKQKHRIW 368
Query: 899 GTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GT+RT+T+ P +SF +FF+P + DG+ ++D
Sbjct: 369 GTIRTVTEDFPKESFFNFFTPQGINSDGKDGNDD 402
Score = 24.3 bits (51), Expect(2) = 1e-48
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 1030 IGHFLRERIVXRAVLYFTG 1086
+GH R I+ R+VL+F+G
Sbjct: 405 LGHNFRTYIIPRSVLFFSG 423
Score = 72.0 bits (175), Expect = 5e-13
Identities = 32/65 (49%), Positives = 47/65 (72%)
Frame = +2
Query: 233 SSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITG 412
+ ++E+LP VK R+ ALK+LQ + A++E+KF E H +ERK+A +YQPL +KRR+ I
Sbjct: 98 TDFVESLPVKVKYRVLALKKLQTRVANLESKFLREFHGIERKFAEMYQPLLEKRRQIINA 157
Query: 413 DVEPT 427
EPT
Sbjct: 158 IYEPT 162
>ref|XP_003360439.1| PREDICTED: nucleosome assembly protein 1-like 3-like [Sus scrofa].
Length = 480
Score = 159 bits (402), Expect(2) = 3e-40
Identities = 80/163 (49%), Positives = 107/163 (65%), Gaps = 7/163 (4%)
Frame = +2
Query: 539 NPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPND 718
+PKGIP++W T+ +NVD L ++Q+YDEPILK L D+ +KFS+PG+P+S+ EF F PN
Sbjct: 282 DPKGIPDYWLTVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGRPISYTFEFCFLPNP 341
Query: 719 YFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGR 898
YF N VLTKTY +KS+PD DPF G EI DC GC IDW++ ++VTV T + +
Sbjct: 342 YFRNEVLTKTYIIKSKPDHNDPFFSWGWEIQDCKGCKIDWRRGKDVTVTT--ARSRTTAT 399
Query: 899 GTVRTITKQVPSDSFLHFFSPLKASGDGE-------SLDEDSE 1006
G V T + VP+ SF +FFSP + G+ LDED E
Sbjct: 400 GEVATQPRVVPNASFFNFFSPPEIPTIGKLEPREDAILDEDFE 442
Score = 24.6 bits (52), Expect(2) = 3e-40
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIG L + ++ +++ Y+TG
Sbjct: 442 EIGQILHDNVILKSIYYYTG 461
Score = 70.5 bits (171), Expect = 2e-12
Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Frame = +2
Query: 80 ADNSFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPS--SYIETL 253
+D+S S S S + ++S++ + + + R PS S+++ L
Sbjct: 33 SDSSSSSSSSSSSTSCSSSSSSSSSNSRSRFYRKKRVPGPSRR---ARRAPSGRSFVDQL 89
Query: 254 PKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTD 430
P+AV+ R+ AL+ +Q +C ++A F + +H+LERKYA L +PL+D+R + I + EPT+
Sbjct: 90 PRAVRNRVQALRNIQDECDKVDALFLKAIHELERKYAELNRPLYDRRFQIINAEYEPTE 148
>ref|NP_001193822.1| nucleosome assembly protein 1-like 5 [Sus scrofa].
Length = 192
Score = 58.2 bits (139), Expect = 8e-09
Identities = 34/95 (35%), Positives = 56/95 (58%)
Frame = +2
Query: 137 ASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRINALKQLQVKCAHI 316
+ +++ Q + PQ A ++ + +I +LP +VK R+ ALK+LQ +C I
Sbjct: 46 SGDSDGAVGQTAEEPQAPA------ENAPKPRNDFIGSLPNSVKCRVLALKKLQKRCDKI 99
Query: 317 EAKFYEEVHDLERKYAALYQPLFDKRREFITGDVE 421
EAKF +E LE+KY +Y+PL K +E +TG++E
Sbjct: 100 EAKFDKEFQALEKKYNDIYKPLLAKIQE-LTGEME 133
>ref|XP_003122251.2| PREDICTED: protein SET-like isoform 1 [Sus scrofa].
Length = 235
Score = 55.5 bits (132), Expect = 5e-08
Identities = 56/225 (24%), Positives = 83/225 (36%), Gaps = 2/225 (0%)
Frame = +2
Query: 332 EEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXXXXDKLAGDVKDKVVIXX 511
EE+ +E+KY L QP F KR E I
Sbjct: 9 EEILKVEQKYNKLRQPFFQKRSELIAK--------------------------------- 35
Query: 512 XXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFV 691
IP FW T F N +S L+ E DE L +L ++V E + +
Sbjct: 36 -------------IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIK-SGYR 81
Query: 692 LEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKRQNVTVKTL 871
++F+F+ N YF N VL+K + + + DP S I WK +++T ++
Sbjct: 82 IDFYFDENPYFENKVLSKEFHLN---ESGDPSS---------KSTEIKWKSGKDLTKRSS 129
Query: 872 QKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGD--GESLDED 1000
Q + K R + P F F A D GE + +D
Sbjct: 130 QTQNK-----ASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDD 169
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,360,157
Number of extensions: 530614
Number of successful extensions: 2114
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2106
Number of HSP's successfully gapped: 13
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013185
(1086 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032698.1| nucleosome assembly protein 1-like 4 [Mus muscu... 550 e-162
Alignment gi|NP_001140179.1| nucleosome assembly protein 1-like 1 isoform... 385 e-112
Alignment gi|NP_056596.1| nucleosome assembly protein 1-like 1 isoform 2 ... 385 e-112
Alignment gi|NP_032697.2| nucleosome assembly protein 1-like 2 [Mus muscu... 209 2e-55
Alignment gi|NP_620081.1| nucleosome assembly protein 1-like 3 [Mus muscu... 149 1e-37
Alignment gi|NP_067407.1| nucleosome assembly protein 1-like 5 [Mus muscu... 61 2e-09
Alignment gi|NP_001191804.1| protein SET isoform 2 [Mus musculus]. 60 2e-09
Alignment gi|XP_001472086.2| PREDICTED: protein SET-like isoform 2 [Mus m... 60 3e-09
Alignment gi|NP_076360.1| protein SET isoform 1 [Mus musculus]. 60 3e-09
Alignment gi|XP_003086792.1| PREDICTED: protein SET-like, partial [Mus mu... 59 7e-09
>ref|NP_032698.1| nucleosome assembly protein 1-like 4 [Mus musculus].
Length = 375
Score = 550 bits (1417), Expect(2) = e-162
Identities = 272/318 (85%), Positives = 289/318 (90%)
Frame = +2
Query: 77 MADNSFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLP 256
MA+NS SDG P++S+EAAKNASNTEKLTDQVMQNPQVLAALQERLD+VSHTPSSYIETLP
Sbjct: 1 MAENSLSDGGPADSVEAAKNASNTEKLTDQVMQNPQVLAALQERLDNVSHTPSSYIETLP 60
Query: 257 KAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAX 436
KAVKRRINALKQLQV+CAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDA
Sbjct: 61 KAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAE 120
Query: 437 XXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEY 616
DKLAGD+K+KVVI NPKGIPEFWFTIFRNVDMLSELVQEY
Sbjct: 121 SAWHSENEEEDKLAGDMKNKVVIAEKEAATVEELNPKGIPEFWFTIFRNVDMLSELVQEY 180
Query: 617 DEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFE 796
DEPILKHLQDIKVKFS+PGQPMSFVLEFHFEPNDYF+N VLTKTYKMKSEPDKADPFSFE
Sbjct: 181 DEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNPVLTKTYKMKSEPDKADPFSFE 240
Query: 797 GPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASG 976
GPEIVDCDGC IDWKK +NVTVKT++KKQKHKGRGTVRTITKQVP++SF +FFSPLKASG
Sbjct: 241 GPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFSPLKASG 300
Query: 977 DGESLDEDSEFTLASDLK 1030
DGESLDEDSEFTLASD +
Sbjct: 301 DGESLDEDSEFTLASDFE 318
Score = 40.0 bits (92), Expect(2) = e-162
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHF RERIV RAVLYFTG
Sbjct: 318 EIGHFFRERIVPRAVLYFTG 337
>ref|NP_001140179.1| nucleosome assembly protein 1-like 1 isoform 1 [Mus musculus].
Length = 418
Score = 385 bits (989), Expect(2) = e-112
Identities = 192/310 (61%), Positives = 239/310 (77%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LPK VKRR+N
Sbjct: 47 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVN 106
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 107 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 166
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 167 --DEVSEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 223
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPNDYF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 224 KDIKVKFSDAGQPMSFVLEFHFEPNDYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 283
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + +G+ LD+D
Sbjct: 284 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPENGD-LDDD 342
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 343 AEAILAADFE 352
Score = 40.0 bits (92), Expect(2) = e-112
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 352 EIGHFLRERIIPRSVLYFTG 371
>ref|NP_056596.1| nucleosome assembly protein 1-like 1 isoform 2 [Mus musculus].
Length = 391
Score = 385 bits (989), Expect(2) = e-112
Identities = 192/310 (61%), Positives = 239/310 (77%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LPK VKRR+N
Sbjct: 20 EEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEVSEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPNDYF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNDYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + +G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPENGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-112
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|NP_032697.2| nucleosome assembly protein 1-like 2 [Mus musculus].
Length = 460
Score = 209 bits (532), Expect(2) = 2e-55
Identities = 116/302 (38%), Positives = 170/302 (56%), Gaps = 36/302 (11%)
Frame = +2
Query: 233 SSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYA---------------A 367
+ ++E+LP VK R+ ALK+LQ + AH+E+KF E HD+ERK+A A
Sbjct: 98 TDFVESLPVKVKCRVLALKKLQTRAAHLESKFLREFHDIERKFAEMYQPLLEKRRQIINA 157
Query: 368 LYQPLFDK----------------RREFITGDV-----EPTDAXXXXXXXXXXXDKLAGD 484
+Y+P ++ E G+ E D D +
Sbjct: 158 VYEPTEEECEYKSDCEDYFEEEMDEEEETNGNEDGMVHEYVDEDDGYEDCYYDYDDEEEE 217
Query: 485 VKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFS 664
++ +PKGIP+FW T+ +NV+ L+ ++++YDEPILK L DIKVK S
Sbjct: 218 EEEDDSAGATGGEEVNEEDPKGIPDFWLTVLKNVEALTPMIKKYDEPILKLLTDIKVKLS 277
Query: 665 EPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKK 844
+PG+P+SF LEFHF+PN+YF N +LTKTY +KS+ DP + G I GC IDW +
Sbjct: 278 DPGEPLSFTLEFHFKPNEYFKNELLTKTYVLKSKLACYDPHPYRGTAIEYATGCDIDWNE 337
Query: 845 RQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDEDSEFTLASD 1024
+NVT++T++KKQ+H+ GTVRT+T+ P DSF +FFSP S +G DE+ +F L +
Sbjct: 338 GKNVTLRTIKKKQRHRVWGTVRTVTEDFPKDSFFNFFSPHGISLNGG--DENDDFLLGHN 395
Query: 1025 LK 1030
L+
Sbjct: 396 LR 397
Score = 25.8 bits (55), Expect(2) = 2e-55
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 1030 IGHFLRERIVXRAVLYFTG 1086
+GH LR I+ R+VL+F+G
Sbjct: 392 LGHNLRTYIIPRSVLFFSG 410
>ref|NP_620081.1| nucleosome assembly protein 1-like 3 [Mus musculus].
Length = 544
Score = 149 bits (377), Expect(2) = 1e-37
Identities = 68/141 (48%), Positives = 95/141 (67%)
Frame = +2
Query: 539 NPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPND 718
+PKGIP++W T+ +NVD L ++Q+ DEPILK L D+ +KFS PGQP+ + EFHF PN
Sbjct: 345 DPKGIPDYWLTVLKNVDKLGPMIQKCDEPILKFLSDVSLKFSNPGQPIGYTFEFHFLPNP 404
Query: 719 YFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGR 898
YF N +L KTY ++S+PD DPF G EI +C GC IDW++ ++VTV T + + G
Sbjct: 405 YFRNELLMKTYIIRSKPDHYDPFFAWGWEIEECKGCKIDWRRGKDVTVTTTRSRPGITGE 464
Query: 899 GTVRTITKQVPSDSFLHFFSP 961
+ + VP+ SF +FFSP
Sbjct: 465 --IEVQPRVVPNASFFNFFSP 483
Score = 25.8 bits (55), Expect(2) = 1e-37
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIG L + ++ +++ YFTG
Sbjct: 505 EIGQILHDNVILKSIYYFTG 524
Score = 68.9 bits (167), Expect = 6e-12
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Frame = +2
Query: 80 ADNSFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSS--YIETL 253
+ +S S S S + +S+ ++ + P+ Q R PS +++ L
Sbjct: 59 SSSSSSSSSSSSSSSGSSGSSSNGSHLNRKKRVPEPSRRAQRR-------PSGKLFLDKL 111
Query: 254 PKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTD 430
P+AV+ R+ AL+ +Q +C ++ F +HDLERKYA L +PL+DKR + I + EPT+
Sbjct: 112 PQAVRNRVQALRNIQNECDKVDTLFLRAIHDLERKYAELNKPLYDKRFQIINAEYEPTE 170
>ref|NP_067407.1| nucleosome assembly protein 1-like 5 [Mus musculus].
Length = 156
Score = 60.8 bits (146), Expect = 2e-09
Identities = 35/103 (33%), Positives = 58/103 (56%)
Frame = +2
Query: 113 ESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRINALKQ 292
E + ++A+ + + PQ A ++ ++E+LP +VK R+ ALK+
Sbjct: 20 EGAQGGEDAATGDSAAAPAAEEPQAPA------ENAPKPKKDFMESLPNSVKCRVLALKK 73
Query: 293 LQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVE 421
LQ +C IEAKF +E LE+KY +Y+PL K +E +TG++E
Sbjct: 74 LQKRCDKIEAKFDKEFQALEKKYNDIYKPLLAKIQE-LTGEME 115
>ref|NP_001191804.1| protein SET isoform 2 [Mus musculus].
Length = 277
Score = 60.5 bits (145), Expect = 2e-09
Identities = 61/254 (24%), Positives = 95/254 (37%), Gaps = 2/254 (0%)
Frame = +2
Query: 245 ETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEP 424
ET K + I + ++Q + + + EE+ +E+KY L QP F KR E I
Sbjct: 22 ETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK---- 77
Query: 425 TDAXXXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSEL 604
IP FW T F N +S L
Sbjct: 78 ------------------------------------------IPNFWVTTFVNHPQVSAL 95
Query: 605 VQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADP 784
+ E DE L +L ++V E + + ++F+F+ N YF N VL+K + + + DP
Sbjct: 96 LGEEDEEALHYLTRVEVTEFEDIK-SGYRIDFYFDENPYFENKVLSKEFHLN---ESGDP 151
Query: 785 FSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPL 964
S I WK +++T ++ Q + K R + P F F
Sbjct: 152 SS---------KSTEIKWKSGKDLTKRSSQTQNK-----ASRKRQHEEPESFFTWFTDHS 197
Query: 965 KASGD--GESLDED 1000
A D GE + +D
Sbjct: 198 DAGADELGEVIKDD 211
>ref|XP_001472086.2| PREDICTED: protein SET-like isoform 2 [Mus musculus].
Length = 289
Score = 60.1 bits (144), Expect = 3e-09
Identities = 66/274 (24%), Positives = 104/274 (37%), Gaps = 5/274 (1%)
Frame = +2
Query: 194 ALQERLDSVSHTPSSYIETLPKAVKRRINALK---QLQVKCAHIEAKFYEEVHDLERKYA 364
A +L+ S +P LPK K + A++ ++Q + + + EE+ +E+KY
Sbjct: 19 AAAPKLEDKSASPG-----LPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYN 73
Query: 365 ALYQPLFDKRREFITGDVEPTDAXXXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNP 544
L QP F KR E I
Sbjct: 74 KLRQPFFQKRSELIAK-------------------------------------------- 89
Query: 545 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYF 724
IP FW T F N +S L+ E DE L +L ++V E + + ++F+F+ N YF
Sbjct: 90 --IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIK-SGYRIDFYFDENPYF 146
Query: 725 SNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGT 904
N VL+K + + + DP S I WK +++T ++ Q + K
Sbjct: 147 ENKVLSKEFHLN---ESGDPSS---------KSTEIKWKSGKDLTKRSSQTQNK-----A 189
Query: 905 VRTITKQVPSDSFLHFFSPLKASGD--GESLDED 1000
R + P F F A D GE + +D
Sbjct: 190 SRKRQHEEPESFFTWFTDHSDAGADELGEVIKDD 223
>ref|NP_076360.1| protein SET isoform 1 [Mus musculus].
Length = 289
Score = 60.1 bits (144), Expect = 3e-09
Identities = 66/274 (24%), Positives = 104/274 (37%), Gaps = 5/274 (1%)
Frame = +2
Query: 194 ALQERLDSVSHTPSSYIETLPKAVKRRINALK---QLQVKCAHIEAKFYEEVHDLERKYA 364
A +L+ S +P LPK K + A++ ++Q + + + EE+ +E+KY
Sbjct: 19 AAAPKLEDKSASPG-----LPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYN 73
Query: 365 ALYQPLFDKRREFITGDVEPTDAXXXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNP 544
L QP F KR E I
Sbjct: 74 KLRQPFFQKRSELIAK-------------------------------------------- 89
Query: 545 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYF 724
IP FW T F N +S L+ E DE L +L ++V E + + ++F+F+ N YF
Sbjct: 90 --IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIK-SGYRIDFYFDENPYF 146
Query: 725 SNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGT 904
N VL+K + + + DP S I WK +++T ++ Q + K
Sbjct: 147 ENKVLSKEFHLN---ESGDPSS---------KSTEIKWKSGKDLTKRSSQTQNK-----A 189
Query: 905 VRTITKQVPSDSFLHFFSPLKASGD--GESLDED 1000
R + P F F A D GE + +D
Sbjct: 190 SRKRQHEEPESFFTWFTDHSDAGADELGEVIKDD 223
>ref|XP_003086792.1| PREDICTED: protein SET-like, partial [Mus musculus].
Length = 188
Score = 58.9 bits (141), Expect = 7e-09
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 3/234 (1%)
Frame = +2
Query: 194 ALQERLDSVSHTPSSYIETLPKAVKRRINALK---QLQVKCAHIEAKFYEEVHDLERKYA 364
A +L+ S +P LPK K + A++ ++Q + + + EE+ +E+KY
Sbjct: 19 AAAPKLEDKSASPG-----LPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYN 73
Query: 365 ALYQPLFDKRREFITGDVEPTDAXXXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNP 544
L QP F KR E I
Sbjct: 74 KLRQPFFQKRSELIAK-------------------------------------------- 89
Query: 545 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYF 724
IP FW T F N +S L+ E DE L +L ++V E + + ++F+F+ N YF
Sbjct: 90 --IPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIK-SGYRIDFYFDENPYF 146
Query: 725 SNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQK 886
N VL+K + + + DP S I WK +++T ++ Q + K
Sbjct: 147 ENKVLSKEFHLN---ESGDPSS---------KSTEIKWKSGKDLTKRSSQTQNK 188
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,235,473
Number of extensions: 706966
Number of successful extensions: 2793
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2779
Number of HSP's successfully gapped: 19
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013185
(1086 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005960.1| nucleosome assembly protein 1-like 4 [Homo sapi... 553 e-162
Alignment gi|NP_631946.1| nucleosome assembly protein 1-like 1 [Homo sapi... 383 e-111
Alignment gi|NP_004528.1| nucleosome assembly protein 1-like 1 [Homo sapi... 383 e-111
Alignment gi|NP_068798.1| nucleosome assembly protein 1-like 2 [Homo sapi... 211 4e-56
Alignment gi|NP_004529.2| nucleosome assembly protein 1-like 3 [Homo sapi... 158 7e-40
Alignment gi|NP_715638.1| nucleosome assembly protein 1-like 5 [Homo sapi... 63 5e-10
Alignment gi|NP_003002.2| protein SET isoform 2 [Homo sapiens]. 60 3e-09
Alignment gi|NP_001116293.1| protein SET isoform 1 [Homo sapiens]. 58 2e-08
Alignment gi|NP_003300.1| testis-specific Y-encoded-like protein 1 [Homo ... 50 5e-06
Alignment gi|NP_001003937.2| testis-specific Y-encoded-like protein 6 [Ho... 49 8e-06
>ref|NP_005960.1| nucleosome assembly protein 1-like 4 [Homo sapiens].
Length = 375
Score = 553 bits (1424), Expect(2) = e-162
Identities = 271/318 (85%), Positives = 291/318 (91%)
Frame = +2
Query: 77 MADNSFSDGVPSESLEAAKNASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLP 256
MAD+SFSDGVPS+S+EAAKNASNTEKLTDQVMQNP+VLAALQERLD+V HTPSSYIETLP
Sbjct: 1 MADHSFSDGVPSDSVEAAKNASNTEKLTDQVMQNPRVLAALQERLDNVPHTPSSYIETLP 60
Query: 257 KAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAX 436
KAVKRRINALKQLQV+CAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDA
Sbjct: 61 KAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAE 120
Query: 437 XXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEY 616
+KLAGD+K KVV+ P+PKGIPEFWFTIFRNVDMLSELVQEY
Sbjct: 121 SEWHSENEEEEKLAGDMKSKVVVTEKAAATAEEPDPKGIPEFWFTIFRNVDMLSELVQEY 180
Query: 617 DEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFE 796
DEPILKHLQDIKVKFS+PGQPMSFVLEFHFEPNDYF+NSVLTKTYKMKSEPDKADPFSFE
Sbjct: 181 DEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNSVLTKTYKMKSEPDKADPFSFE 240
Query: 797 GPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASG 976
GPEIVDCDGC IDWKK +NVTVKT++KKQKHKGRGTVRTITKQVP++SF +FF+PLKASG
Sbjct: 241 GPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFNPLKASG 300
Query: 977 DGESLDEDSEFTLASDLK 1030
DGESLDEDSEFTLASD +
Sbjct: 301 DGESLDEDSEFTLASDFE 318
Score = 40.0 bits (92), Expect(2) = e-162
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHF RERIV RAVLYFTG
Sbjct: 318 EIGHFFRERIVPRAVLYFTG 337
>ref|NP_631946.1| nucleosome assembly protein 1-like 1 [Homo sapiens].
Length = 391
Score = 383 bits (983), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKLKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|NP_004528.1| nucleosome assembly protein 1-like 1 [Homo sapiens].
Length = 391
Score = 383 bits (983), Expect(2) = e-111
Identities = 190/310 (61%), Positives = 238/310 (76%), Gaps = 4/310 (1%)
Frame = +2
Query: 113 ESLEAAKNASNTE----KLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRIN 280
E +E + T+ +LT Q+MQNPQ+LAALQERLD + TP+ YIE+LP+ VKRR+N
Sbjct: 20 EEVEEEETGEETKLKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVN 79
Query: 281 ALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAXXXXXXXXX 460
ALK LQVKCA IEAKFYEEVHDLERKYA LYQPLFDKR E I EPT+
Sbjct: 80 ALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEE 139
Query: 461 XXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHL 640
D+++ ++K+K I +PKGIPEFW T+F+NVD+LS++VQE+DEPILKHL
Sbjct: 140 --DEISEELKEKAKIEDEKKDEEKE-DPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHL 196
Query: 641 QDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCD 820
+DIKVKFS+ GQPMSFVLEFHFEPN+YF+N VLTKTY+M+SEPD +DPFSF+GPEI+ C
Sbjct: 197 KDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCT 256
Query: 821 GCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDED 1000
GC IDWKK +NVT+KT++KKQKHKGRGTVRT+TK V +DSF +FF+P + G+ LD+D
Sbjct: 257 GCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGD-LDDD 315
Query: 1001 SEFTLASDLK 1030
+E LA+D +
Sbjct: 316 AEAILAADFE 325
Score = 40.0 bits (92), Expect(2) = e-111
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIGHFLRERI+ R+VLYFTG
Sbjct: 325 EIGHFLRERIIPRSVLYFTG 344
>ref|NP_068798.1| nucleosome assembly protein 1-like 2 [Homo sapiens].
Length = 460
Score = 211 bits (538), Expect(2) = 4e-56
Identities = 115/304 (37%), Positives = 170/304 (55%), Gaps = 38/304 (12%)
Frame = +2
Query: 233 SSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYA---------------A 367
+ ++E+LP VK R+ ALK+LQ + A++E+KF E HD+ERK+A A
Sbjct: 98 TDFVESLPVKVKYRVLALKKLQTRAANLESKFLREFHDIERKFAEMYQPLLEKRRQIINA 157
Query: 368 LYQP-----------------------LFDKRREFITGDVEPTDAXXXXXXXXXXXDKLA 478
+Y+P ++ + V+ D ++
Sbjct: 158 IYEPTEEECEYKSDSEDCDDEEMCHEEMYGNEEGMVHEYVDEDDGYEDYYYDYAVEEEEE 217
Query: 479 GDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVK 658
+ +D I +PKGIP+FW T+ +NVD L+ L+++YDEPILK L DIKVK
Sbjct: 218 EEEEDD--IEATGEENKEEEDPKGIPDFWLTVLKNVDTLTPLIKKYDEPILKLLTDIKVK 275
Query: 659 FSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDW 838
S+PG+P+SF LEFHF+PN+YF N +LTKTY +KS+ DP + G I GC IDW
Sbjct: 276 LSDPGEPLSFTLEFHFKPNEYFKNELLTKTYVLKSKLAYYDPHPYRGTAIEYSTGCEIDW 335
Query: 839 KKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASGDGESLDEDSEFTLA 1018
+ +NVT+KT++KKQKH+ GT+RT+T+ P DSF +FFSP + +G D + +F L
Sbjct: 336 NEGKNVTLKTIKKKQKHRIWGTIRTVTEDFPKDSFFNFFSPHGITSNGR--DGNDDFLLG 393
Query: 1019 SDLK 1030
+L+
Sbjct: 394 HNLR 397
Score = 25.8 bits (55), Expect(2) = 4e-56
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 1030 IGHFLRERIVXRAVLYFTG 1086
+GH LR I+ R+VL+F+G
Sbjct: 392 LGHNLRTYIIPRSVLFFSG 410
>ref|NP_004529.2| nucleosome assembly protein 1-like 3 [Homo sapiens].
Length = 506
Score = 158 bits (400), Expect(2) = 7e-40
Identities = 78/163 (47%), Positives = 105/163 (64%), Gaps = 7/163 (4%)
Frame = +2
Query: 539 NPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPND 718
+PKGIP++W + +NVD L ++Q+YDEPILK L D+ +KFS+PGQP+S+ EFHF PN
Sbjct: 307 DPKGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNP 366
Query: 719 YFSNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGR 898
YF N VL KTY +K++PD DPF G EI DC GC IDW++ ++VTV T Q +
Sbjct: 367 YFRNEVLVKTYIIKAKPDHNDPFFSWGWEIEDCKGCKIDWRRGKDVTVTTTQSRT--TAT 424
Query: 899 GTVRTITKQVPSDSFLHFFSPLKASGDGE-------SLDEDSE 1006
G + + VP+ SF +FFSP + G+ LDED E
Sbjct: 425 GEIEIQPRVVPNASFFNFFSPPEIPMIGKLEPREDAILDEDFE 467
Score = 24.6 bits (52), Expect(2) = 7e-40
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 1027 EIGHFLRERIVXRAVLYFTG 1086
EIG L + ++ +++ Y+TG
Sbjct: 467 EIGQILHDNVILKSIYYYTG 486
Score = 68.9 bits (167), Expect = 8e-12
Identities = 27/66 (40%), Positives = 48/66 (72%)
Frame = +2
Query: 233 SSYIETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITG 412
+++++ LP+AV+ R+ AL+ +Q +C ++ F + +HDLERKYA L +PL+D+R + I
Sbjct: 94 TNFVDRLPQAVRNRVQALRNIQDECDKVDTLFLKAIHDLERKYAELNKPLYDRRFQIINA 153
Query: 413 DVEPTD 430
+ EPT+
Sbjct: 154 EYEPTE 159
>ref|NP_715638.1| nucleosome assembly protein 1-like 5 [Homo sapiens].
Length = 182
Score = 62.8 bits (151), Expect = 5e-10
Identities = 36/95 (37%), Positives = 57/95 (60%)
Frame = +2
Query: 137 ASNTEKLTDQVMQNPQVLAALQERLDSVSHTPSSYIETLPKAVKRRINALKQLQVKCAHI 316
A + + Q+ + PQ A ++ + +IE+LP +VK R+ ALK+LQ +C I
Sbjct: 41 AGDPDSAAGQMAEEPQTPA------ENAPKPKNDFIESLPNSVKCRVLALKKLQKRCDKI 94
Query: 317 EAKFYEEVHDLERKYAALYQPLFDKRREFITGDVE 421
EAKF +E LE+KY +Y+PL K +E +TG++E
Sbjct: 95 EAKFDKEFQALEKKYNDIYKPLLAKIQE-LTGEME 128
>ref|NP_003002.2| protein SET isoform 2 [Homo sapiens].
Length = 277
Score = 60.5 bits (145), Expect = 3e-09
Identities = 61/254 (24%), Positives = 95/254 (37%), Gaps = 2/254 (0%)
Frame = +2
Query: 245 ETLPKAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEP 424
ET K + I + ++Q + + + EE+ +E+KY L QP F KR E I
Sbjct: 22 ETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK---- 77
Query: 425 TDAXXXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSEL 604
IP FW T F N +S L
Sbjct: 78 ------------------------------------------IPNFWVTTFVNHPQVSAL 95
Query: 605 VQEYDEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADP 784
+ E DE L +L ++V E + + ++F+F+ N YF N VL+K + + + DP
Sbjct: 96 LGEEDEEALHYLTRVEVTEFEDIK-SGYRIDFYFDENPYFENKVLSKEFHLN---ESGDP 151
Query: 785 FSFEGPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPL 964
S I WK +++T ++ Q + K R + P F F
Sbjct: 152 SS---------KSTEIKWKSGKDLTKRSSQTQNK-----ASRKRQHEEPESFFTWFTDHS 197
Query: 965 KASGD--GESLDED 1000
A D GE + +D
Sbjct: 198 DAGADELGEVIKDD 211
>ref|NP_001116293.1| protein SET isoform 1 [Homo sapiens].
Length = 290
Score = 57.8 bits (138), Expect = 2e-08
Identities = 59/250 (23%), Positives = 93/250 (37%), Gaps = 2/250 (0%)
Frame = +2
Query: 257 KAVKRRINALKQLQVKCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAX 436
K + I + ++Q + + + EE+ +E+KY L QP F KR E I
Sbjct: 39 KEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAK-------- 90
Query: 437 XXXXXXXXXXDKLAGDVKDKVVIXXXXXXXXXXPNPKGIPEFWFTIFRNVDMLSELVQEY 616
IP FW T F N +S L+ E
Sbjct: 91 --------------------------------------IPNFWVTTFVNHPQVSALLGEE 112
Query: 617 DEPILKHLQDIKVKFSEPGQPMSFVLEFHFEPNDYFSNSVLTKTYKMKSEPDKADPFSFE 796
DE L +L ++V E + + ++F+F+ N YF N VL+K + + + DP S
Sbjct: 113 DEEALHYLTRVEVTEFEDIK-SGYRIDFYFDENPYFENKVLSKEFHLN---ESGDPSS-- 166
Query: 797 GPEIVDCDGCAIDWKKRQNVTVKTLQKKQKHKGRGTVRTITKQVPSDSFLHFFSPLKASG 976
I WK +++T ++ Q + K R + P F F A
Sbjct: 167 -------KSTEIKWKSGKDLTKRSSQTQNK-----ASRKRQHEEPESFFTWFTDHSDAGA 214
Query: 977 D--GESLDED 1000
D GE + +D
Sbjct: 215 DELGEVIKDD 224
>ref|NP_003300.1| testis-specific Y-encoded-like protein 1 [Homo sapiens].
Length = 437
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +2
Query: 545 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVK-FSEPGQPMSFVLEFHFEPNDY 721
+ IP FW T FRN LS +++ D +L+++ +++VK P F +F F N Y
Sbjct: 273 QNIPGFWMTAFRNHPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKF--KFFFRRNPY 330
Query: 722 FSNSVLTKTYKMKS 763
F N ++ K Y+++S
Sbjct: 331 FRNKLIVKEYEVRS 344
>ref|NP_001003937.2| testis-specific Y-encoded-like protein 6 [Homo sapiens].
Length = 410
Score = 48.9 bits (115), Expect = 8e-06
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +2
Query: 545 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVK-FSEPGQPMSFVLEFHFEPNDY 721
+ IP FW T FR+ LS +++ D +L +L +++VK P F +F F+ N Y
Sbjct: 246 RNIPGFWVTAFRHHPQLSAMIRGQDAEMLSYLTNLEVKELRHPRTGCKF--KFFFQRNPY 303
Query: 722 FSNSVLTKTYKMKS 763
F N ++ K Y+++S
Sbjct: 304 FRNKLIVKVYEVRS 317
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,663,804
Number of extensions: 837812
Number of successful extensions: 3487
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3478
Number of HSP's successfully gapped: 17
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013185
(1086 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 283 1e-73
>Sscrofa_Chr02
|| Length = 162569375
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 682 gtctttcgtgttagaattccactttgagcccaacgactacttcagcaactcagtcctgac 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450888 gtctttcgtgttagaattccactttgagcccaacgactacttcagcaactcagtcctgac 450829
Query: 742 caagacgtacaagatgaagtcagagccggacaaggccgatcccttttcctttgaaggccc 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450828 caagacgtacaagatgaagtcagagccggacaaggccgatcccttttcctttgaaggccc 450769
Query: 802 tgaaatagttgactgtgacgggt 824
|||||||||||||||||||||||
Sbjct: 450768 tgaaatagttgactgtgacgggt 450746
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 250 tttacctaaggcagtgaagcgaagaatcaacgcgttgaagcagctgcaggtgaagtgcgc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460928 tttacctaaggcagtgaagcgaagaatcaacgcgttgaagcagctgcaggtgaagtgcgc 460869
Query: 310 tcacatagaagccaagttctacgaggaagttcacgacttggagaggaagtacgcggcgct 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460868 tcacatagaagccaagttctacgaggaagttcacgacttggagaggaagtacgcggcgct 460809
Query: 370 gtaccagcctctctttgacaag 391
||||||||||||||||||||||
Sbjct: 460808 gtaccagcctctctttgacaag 460787
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 479 ggagacgtgaaagataaagtagtcatagcggaaaaagaagcagcagcagcagaagagcca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458994 ggagacgtgaaagataaagtagtcatagcggaaaaagaagcagcagcagcagaagagcca 458935
Query: 539 aaccccaaaggaattccggagttctggttcaccatcttcagaaacgtcgatatgctgagt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458934 aaccccaaaggaattccggagttctggttcaccatcttcagaaacgtcgatatgctgagt 458875
Query: 599 gagctagtgcagg 611
|||||||||||||
Sbjct: 458874 gagctagtgcagg 458862
Score = 228 bits (115), Expect = 5e-57
Identities = 139/147 (94%)
Strand = Plus / Minus
Query: 822 ggtgcgccattgactggaagaaaaggcagaacgtgacggtgaaaaccctccagaagaagc 881
||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||
Sbjct: 449343 ggtgcgccattgactggaagaaaggcaagaacgtgacggtgaaaaccatcaagaagaagc 449284
Query: 882 agaaacacaagggccgaggcaccgtcaggaccatcaccaagcaggtccccagcgattcct 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449283 agaaacacaagggccgaggcaccgtcaggaccatcaccaagcaggtccccagcgattcct 449224
Query: 942 tccttcacttcttcagcccgctcaaag 968
|| | |||||||||||||||||||||
Sbjct: 449223 tcttcaacttcttcagcccgctcaaag 449197
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 148 agaaaagctcacagaccaggtgatgcagaatcctcaggttctggcggctttgcaggaacg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463199 agaaaagctcacagaccaggtgatgcagaatcctcaggttctggcggctttgcaggaacg 463140
Query: 208 actcgacagcgtctcacacactccttccagctacatcgagac 249
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463139 actcgacagcgtctcacacactccttccagctacatcgagac 463098
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 390 agagaagggagttcatcacgggtgacgttgagccgacagatgcggagtcggagtggcaca 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460582 agagaagggagttcatcacgggtgacgttgagccgacagatgcggagtcggagtggcaca 460523
Query: 450 gcgagaacgaagaggaggacaaactggccg 479
||||||||||||||||||||||||||||||
Sbjct: 460522 gcgagaacgaagaggaggacaaactggccg 460493
Score = 155 bits (78), Expect = 6e-35
Identities = 93/97 (95%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 991 ggatgaagattccgagttcaccctggcctcggactt-gaaatcggccacttcctccgcga 1049
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 446658 ggatgaagattccgagttcaccctggcctcggactttgaaatcggccacttcttccgcga 446599
Query: 1050 gcggatagtccngcgcgccgtgctctacttcaccggg 1086
||||||||||| |||||| ||||||||||||||||||
Sbjct: 446598 gcggatagtcccgcgcgctgtgctctacttcaccggg 446562
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 609 aggaatatgatgagccaatcttgaaacacctgcaggatatcaaagtgaagttttcagagc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455425 aggaatatgatgagccaatcttgaaacacctgcaggatatcaaagtgaagttttcagagc 455366
Query: 669 ctggacagcctatg 682
||||||||||||||
Sbjct: 455365 ctggacagcctatg 455352
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 88 cagcttttcagatggggttccttcagagtccttggaagctgctaaaaatgcaagtaacac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467055 cagcttttcagatggggttccttcagagtccttggaagctgctaaaaatgcaagtaacac 466996
Query: 148 ag 149
||
Sbjct: 466995 ag 466994
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 1 gcactcccggagcgagcgaagcccagacggccgccgccactgctgcaggaggcgtgagg 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487212 gcactcccggagcgagcgaagcccagacggccgccgccactgctgcaggaggcgtgagg 487154
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 57 aggagataaaacacattcagatggccgataacag 90
||||||||||||||||||||||||||||||||||
Sbjct: 467731 aggagataaaacacattcagatggccgataacag 467698
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,930,274
Number of extensions: 371
Number of successful extensions: 371
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 11
Length of query: 1086
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1065
Effective length of database: 2,808,413,156
Effective search space: 2990960011140
Effective search space used: 2990960011140
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)