Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013188
(1093 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069852.1| tetraspanin-7 [Bos taurus]. 501 e-142
Alignment gi|NP_001033198.1| tetraspanin-6 [Bos taurus]. 303 2e-82
Alignment gi|NP_991372.1| CD63 antigen [Bos taurus]. 141 9e-34
Alignment gi|NP_001030564.1| tetraspanin-3 [Bos taurus]. 129 6e-30
Alignment gi|NP_001030424.1| CD151 antigen [Bos taurus]. 126 4e-29
Alignment gi|XP_002689666.1| PREDICTED: tetraspanin 3-like [Bos taurus]. 124 1e-28
Alignment gi|XP_591732.1| PREDICTED: tetraspanin 3 isoform 1 [Bos taurus]. 124 1e-28
Alignment gi|NP_001073794.1| tetraspanin-11 [Bos taurus]. 117 2e-26
Alignment gi|NP_001091459.1| CD82 molecule [Bos taurus]. 113 3e-25
Alignment gi|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos... 113 3e-25
>ref|NP_001069852.1| tetraspanin-7 [Bos taurus].
Length = 249
Score = 501 bits (1290), Expect = e-142
Identities = 244/249 (97%), Positives = 246/249 (98%)
Frame = +1
Query: 82 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 261
MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY
Sbjct: 1 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 60
Query: 262 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 441
VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF
Sbjct: 61 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 120
Query: 442 LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD 621
LRTYTDAMQNYNGNDERSRAVDHVQ SLSCCGVQNYTNWSTSPYFLEHG+P SCCMN+T
Sbjct: 121 LRTYTDAMQNYNGNDERSRAVDHVQLSLSCCGVQNYTNWSTSPYFLEHGVPSSCCMNDTY 180
Query: 622 CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 801
CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF
Sbjct: 181 CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 240
Query: 802 ITANQYEMV 828
ITANQYEMV
Sbjct: 241 ITANQYEMV 249
>ref|NP_001033198.1| tetraspanin-6 [Bos taurus].
Length = 245
Score = 303 bits (776), Expect = 2e-82
Identities = 146/248 (58%), Positives = 185/248 (74%), Gaps = 1/248 (0%)
Frame = +1
Query: 88 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 267
SRR++TKPVITC K++L+IY+F+FWITGVILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 5 SRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVL 64
Query: 268 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 447
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEIK++
Sbjct: 65 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIIGFVFRHEIKNSLKN 124
Query: 448 TYTDAMQNYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDC 624
Y A++ YN D RS AVD +Q L CCGV NY +W + Y+ E G P SCC E DC
Sbjct: 125 NYEKALKQYNATGDYRSDAVDKIQSMLHCCGVTNYRDWKDTNYYSEKGFPESCCKLE-DC 183
Query: 625 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 804
+PQ A KVN +GC+ +V + +E+ MG++AG++FG+A QLIG+ LA CLSR I
Sbjct: 184 SPQR------DADKVNNEGCFIMVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 237
Query: 805 TANQYEMV 828
T NQYE+V
Sbjct: 238 TNNQYEIV 245
>ref|NP_991372.1| CD63 antigen [Bos taurus].
Length = 237
Score = 141 bits (356), Expect = 9e-34
Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 2/238 (0%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFG 300
C+K LL + VF V L+AVGV L L I+ A S P V+I G + +
Sbjct: 9 CVKFLLYVLLLVFCACAVGLIAVGVGTHLVLNQTITHGATPSFLLPVVIIAVGAFLFLVA 68
Query: 301 LFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNG 480
GC C+ + ++ +A+FLSL+ L E+ A I+G+VFR +++ F + + M+NY
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVRSEFNKDFRQQMKNYPK 128
Query: 481 NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHN--LTV 654
+++ + +D +Q+ CCG NYT+W + + +P SCC+N T HN +
Sbjct: 129 DNQTASILDKMQKDFECCGAANYTDWE-KILAVTNKVPDSCCVNIT-------HNCGINF 180
Query: 655 AATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 828
++ +GC + + +++ N+ ++ A GIAF +++G++LACCL + I + YE++
Sbjct: 181 VVKDIHTEGCVEKIAAWLRKNVLVVVAAALGIAFVEILGIVLACCLVKSIRSG-YEVM 237
>ref|NP_001030564.1| tetraspanin-3 [Bos taurus].
Length = 253
Score = 129 bits (323), Expect = 6e-30
Identities = 80/236 (33%), Positives = 118/236 (50%), Gaps = 12/236 (5%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIV 291
IT KT+L+ + +FW IL VG + +T Y + T P V+I G +
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 292 VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQN 471
+ GL GC AT R S L + + L LVF+ E+V + G+V+R ++++ R+ +
Sbjct: 66 IIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT 125
Query: 472 YNGN--DERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE---HGIPPSCC------MNET 618
YNG D SRA+D+VQR L CCG+ NY++W + +F E +P SCC N +
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETASSCNGS 185
Query: 619 DCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLAC 786
NP DL+ +GC LV ++ M + A A QL+GML AC
Sbjct: 186 LANPSDLY----------AEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCAC 231
>ref|NP_001030424.1| CD151 antigen [Bos taurus].
Length = 253
Score = 126 bits (316), Expect = 4e-29
Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 15/248 (6%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL ++ FW+ G+ ++AVG+W YISL+A + A Y+L+ G ++V
Sbjct: 15 CLKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGIVVMVT 74
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVF--------RHEIKDTFLRTY 453
G GC AT + +L+LY L ++FL E++AG +++ + +KDT R Y
Sbjct: 75 GALGCCATFKERRNLLRLYFGLLLIIFLLEIIAGALAYIYYQQLNAELKENLKDTMTRRY 134
Query: 454 TDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFL--EHG---IPPSCCMNET 618
+ G++ + AVD +Q+ CCG N +W S + E G +P SCC
Sbjct: 135 -----HQPGHEGVTSAVDKLQQEFHCCGSNNSRDWQDSEWIHSGEAGGRVVPDSCCKTVV 189
Query: 619 -DCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLS 795
C +D H + + GC + +F++ ++ II V GIA Q+ GML CCL
Sbjct: 190 PGCGRRD-HASNIYKV---EGGCITKLETFIQEHLRIIGAVGLGIACVQVFGMLFTCCLY 245
Query: 796 RFITANQY 819
+ + Y
Sbjct: 246 KSLKLEHY 253
>ref|XP_002689666.1| PREDICTED: tetraspanin 3-like [Bos taurus].
Length = 252
Score = 124 bits (311), Expect = 1e-28
Identities = 79/236 (33%), Positives = 116/236 (49%), Gaps = 12/236 (5%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIV 291
IT KT+L+ + +FW IL VG + +T Y + T P V+I G +
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITHDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 292 VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQN 471
+ GL GC A R S L + + L LVF+ E+V + G+V+R ++++ R+ +
Sbjct: 66 IIGLIGCCAPIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVCKT 125
Query: 472 YNGN--DERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE---HGIPPSCC------MNET 618
YNG D SRA+D+VQR L CCG+ NY++W + +F E IP SCC N +
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSIPVSCCRETASSCNGS 185
Query: 619 DCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLAC 786
NP DL+ +GC LV ++ + A A QL+GML AC
Sbjct: 186 LANPSDLY----------AEGCKALVVKKLQEIKMHVIWAALAFAAIQLLGMLCAC 231
>ref|XP_591732.1| PREDICTED: tetraspanin 3 isoform 1 [Bos taurus].
Length = 252
Score = 124 bits (311), Expect = 1e-28
Identities = 79/236 (33%), Positives = 116/236 (49%), Gaps = 12/236 (5%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIV 291
IT KT+L+ + +FW IL VG + +T Y + T P V+I G +
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITHDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 292 VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQN 471
+ GL GC A R S L + + L LVF+ E+V + G+V+R ++++ R+ +
Sbjct: 66 IIGLIGCCAPIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVCKT 125
Query: 472 YNGN--DERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE---HGIPPSCC------MNET 618
YNG D SRA+D+VQR L CCG+ NY++W + +F E IP SCC N +
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSIPVSCCRETASSCNGS 185
Query: 619 DCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLAC 786
NP DL+ +GC LV ++ + A A QL+GML AC
Sbjct: 186 LANPSDLY----------AEGCKALVVKKLQEIKMHVIWAALAFAAIQLLGMLCAC 231
>ref|NP_001073794.1| tetraspanin-11 [Bos taurus].
Length = 253
Score = 117 bits (293), Expect = 2e-26
Identities = 77/256 (30%), Positives = 121/256 (47%), Gaps = 10/256 (3%)
Frame = +1
Query: 82 MASRRMETKPVITC-LKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNA- 255
MA ++E +T LK LL I++F FW+ G ++AVGVW + Y+ ++A ++ A
Sbjct: 1 MAHYKVEQDDWLTVYLKYLLFIFNFFFWVGGAAVMAVGVWTLVEKSGYLGVLASSTFAAS 60
Query: 256 PYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKD 435
Y+LI G ++V G G A R L Y L +FL ELVAG+ V+ + D
Sbjct: 61 AYILIFAGALVMVTGFLGFGAVIREDRGCLSAYFCLLLAIFLVELVAGVLAHVYYQRLSD 120
Query: 436 TFLRTYTDAM-QNYN--GNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE-----HGI 591
+ T + +NY G E + +VD +Q+ CCG + +W S Y L +
Sbjct: 121 ELKQHLTRTLAENYRQPGAAEITASVDRLQQDFKCCGSNSSADWLQSSYILSPEAEGRRV 180
Query: 592 PPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIG 771
P SCC Q H + + GC + F+ ++ ++ V G+A Q+ G
Sbjct: 181 PDSCCKTVVARCGQRAHPSNIYKV---EGGCISKLEQFLADHLLLMGAVGIGVACLQICG 237
Query: 772 MLLACCLSRFITANQY 819
M+L C L R + + Y
Sbjct: 238 MILTCGLHRRLQLHFY 253
>ref|NP_001091459.1| CD82 molecule [Bos taurus].
Length = 268
Score = 113 bits (283), Expect = 3e-25
Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 22/260 (8%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTN---APYVLIGTGTT 285
I K L +++ +F++ G ++L G+W + ++IS++ +ST+ A YV I G
Sbjct: 6 IKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISILQTSSTSFKVAAYVFISVGAL 65
Query: 286 IVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAM 465
++ G GC + +L +Y FL L+ +A++ AG+ + ++K T +
Sbjct: 66 TMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSIVTKLI 125
Query: 466 QNYN--GNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHG---IPPSCCMNETD--- 621
NY D A D+VQ + CCG +Y NW+ + + P SC ++ D
Sbjct: 126 HNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSCKKSDEDDAL 185
Query: 622 CNPQD------LHNLTVAATK-----VNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLI 768
PQ N T + V Q+GC + V +++ N+G+I GV G+A +L+
Sbjct: 186 MMPQKGFCEVPFGNKTQSGNNPKDWPVYQEGCMEKVQGWLQENLGVILGVCVGVAVIELL 245
Query: 769 GMLLACCLSRFITANQYEMV 828
GM L+ L R + + Y V
Sbjct: 246 GMFLSMFLCRRVHSEDYSKV 265
>ref|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos taurus].
Length = 268
Score = 113 bits (283), Expect = 3e-25
Identities = 71/260 (27%), Positives = 123/260 (47%), Gaps = 22/260 (8%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTN---APYVLIGTGTT 285
I K L +++ +F++ G ++L G+W + ++IS++ +ST+ A YV I G
Sbjct: 6 IKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISILQTSSTSFKVAAYVFISVGAL 65
Query: 286 IVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAM 465
++ G GC + +L +Y FL L+ +A++ AG+ + ++K T +
Sbjct: 66 TMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSIVTKLI 125
Query: 466 QNYN--GNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHG---IPPSCCMNETD--- 621
NY D A D+VQ + CCG +Y NW+ + + P SC ++ D
Sbjct: 126 HNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSCKKSDEDDAL 185
Query: 622 CNPQD------LHNLTVAATK-----VNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLI 768
PQ N T + V Q+GC + V +++ N+G+I GV G+A +L+
Sbjct: 186 MMPQKGFCEVPFGNKTQSGNNPKDWPVYQEGCMEKVQGWLQENLGVILGVCVGVAVIELL 245
Query: 769 GMLLACCLSRFITANQYEMV 828
GM L+ L R + + Y V
Sbjct: 246 GMFLSMFLCRRVHSEDYSKV 265
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,969,147
Number of extensions: 1192187
Number of successful extensions: 4695
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 4620
Number of HSP's successfully gapped: 37
Length of query: 364
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,240,222
Effective search space: 3702457720
Effective search space used: 3702457720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013188
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013188
(1093 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537996.1| PREDICTED: similar to Tetraspanin-7 (Tspan-7) (... 512 e-145
Alignment gi|XP_538102.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (... 295 7e-80
Alignment gi|XP_850353.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (... 295 7e-80
Alignment gi|XP_861353.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (... 167 2e-41
Alignment gi|XP_861269.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (... 167 2e-41
Alignment gi|XP_531624.2| PREDICTED: similar to CD63 antigen (Melanoma-as... 147 2e-35
Alignment gi|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [... 128 1e-29
Alignment gi|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [... 128 1e-29
Alignment gi|XP_544788.2| PREDICTED: similar to Tetraspanin-3 (Tspan-3) (... 118 9e-27
Alignment gi|XP_865890.1| PREDICTED: similar to transmembrane 4 superfami... 112 5e-25
>ref|XP_537996.1| PREDICTED: similar to Tetraspanin-7 (Tspan-7) (Transmembrane 4
superfamily member 2) (Cell surface glycoprotein A15)
(T-cell acute lymphoblastic leukemia associated antigen
1) (TALLA-1) (Membrane component, X chromosome, surface
marker 1) (CD231 antigen)... [Canis familiaris].
Length = 249
Score = 512 bits (1318), Expect = e-145
Identities = 249/249 (100%), Positives = 249/249 (100%)
Frame = +1
Query: 82 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 261
MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY
Sbjct: 1 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 60
Query: 262 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 441
VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF
Sbjct: 61 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 120
Query: 442 LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD 621
LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD
Sbjct: 121 LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD 180
Query: 622 CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 801
CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF
Sbjct: 181 CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 240
Query: 802 ITANQYEMV 828
ITANQYEMV
Sbjct: 241 ITANQYEMV 249
>ref|XP_538102.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (Transmembrane 4
superfamily member 6) (T245 protein) (Tetraspanin TM4-D)
(A15 homolog) isoform 1 [Canis familiaris].
Length = 245
Score = 295 bits (754), Expect = 7e-80
Identities = 140/248 (56%), Positives = 185/248 (74%), Gaps = 1/248 (0%)
Frame = +1
Query: 88 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 267
SRR++TKPVITC K++L+IY+F+FWITG+ILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 5 SRRLQTKPVITCFKSVLLIYTFIFWITGLILLAVGIWGKVSLENYFSLLNEKATNVPFVL 64
Query: 268 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 447
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEI+++F
Sbjct: 65 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIRNSFKS 124
Query: 448 TYTDAMQNYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDC 624
Y ++ YN D RS AVD +Q +L CCGV +Y +W + Y+ E G P SCC E +C
Sbjct: 125 NYERTLKQYNSTGDYRSDAVDKIQNTLHCCGVTDYRDWRDTNYYSEKGFPKSCCKLE-NC 183
Query: 625 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 804
+PQ A KVN +GC+ V + +E+ MG++AG++FG+A QL+G+ L+ CLSR I
Sbjct: 184 SPQR------DADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLVGIFLSYCLSRAI 237
Query: 805 TANQYEMV 828
T NQYE+V
Sbjct: 238 TNNQYEIV 245
>ref|XP_850353.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (Transmembrane 4
superfamily member 6) (T245 protein) (Tetraspanin TM4-D)
(A15 homolog) isoform 2 [Canis familiaris].
Length = 245
Score = 295 bits (754), Expect = 7e-80
Identities = 140/248 (56%), Positives = 185/248 (74%), Gaps = 1/248 (0%)
Frame = +1
Query: 88 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 267
SRR++TKPVITC K++L+IY+F+FWITG+ILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 5 SRRLQTKPVITCFKSVLLIYTFIFWITGLILLAVGIWGKVSLENYFSLLNEKATNVPFVL 64
Query: 268 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 447
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEI+++F
Sbjct: 65 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIRNSFKS 124
Query: 448 TYTDAMQNYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDC 624
Y ++ YN D RS AVD +Q +L CCGV +Y +W + Y+ E G P SCC E +C
Sbjct: 125 NYERTLKQYNSTGDYRSDAVDKIQNTLHCCGVTDYRDWRDTNYYSEKGFPKSCCKLE-NC 183
Query: 625 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 804
+PQ A KVN +GC+ V + +E+ MG++AG++FG+A QL+G+ L+ CLSR I
Sbjct: 184 SPQR------DADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLVGIFLSYCLSRAI 237
Query: 805 TANQYEMV 828
T NQYE+V
Sbjct: 238 TNNQYEIV 245
>ref|XP_861353.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (Transmembrane 4
superfamily member 6) (T245 protein) (Tetraspanin TM4-D)
(A15 homolog) isoform 4 [Canis familiaris].
Length = 157
Score = 167 bits (422), Expect = 2e-41
Identities = 84/164 (51%), Positives = 113/164 (68%), Gaps = 1/164 (0%)
Frame = +1
Query: 340 MLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGN-DERSRAVDHVQ 516
MLKLYAMFL+L+FL ELVA I GFVFRHEI+++F Y ++ YN D RS AVD +Q
Sbjct: 1 MLKLYAMFLTLIFLVELVAAIVGFVFRHEIRNSFKSNYERTLKQYNSTGDYRSDAVDKIQ 60
Query: 517 RSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLV 696
+L CCGV +Y +W + Y+ E G P SCC E +C+PQ A KVN +GC+ V
Sbjct: 61 NTLHCCGVTDYRDWRDTNYYSEKGFPKSCCKLE-NCSPQR------DADKVNNEGCFIKV 113
Query: 697 TSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 828
+ +E+ MG++AG++FG+A QL+G+ L+ CLSR IT NQYE+V
Sbjct: 114 MTIIESEMGVVAGISFGVACFQLVGIFLSYCLSRAITNNQYEIV 157
>ref|XP_861269.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (Transmembrane 4
superfamily member 6) (T245 protein) (Tetraspanin TM4-D)
(A15 homolog) isoform 3 [Canis familiaris].
Length = 157
Score = 167 bits (422), Expect = 2e-41
Identities = 84/164 (51%), Positives = 113/164 (68%), Gaps = 1/164 (0%)
Frame = +1
Query: 340 MLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGN-DERSRAVDHVQ 516
MLKLYAMFL+L+FL ELVA I GFVFRHEI+++F Y ++ YN D RS AVD +Q
Sbjct: 1 MLKLYAMFLTLIFLVELVAAIVGFVFRHEIRNSFKSNYERTLKQYNSTGDYRSDAVDKIQ 60
Query: 517 RSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLV 696
+L CCGV +Y +W + Y+ E G P SCC E +C+PQ A KVN +GC+ V
Sbjct: 61 NTLHCCGVTDYRDWRDTNYYSEKGFPKSCCKLE-NCSPQR------DADKVNNEGCFIKV 113
Query: 697 TSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 828
+ +E+ MG++AG++FG+A QL+G+ L+ CLSR IT NQYE+V
Sbjct: 114 MTIIESEMGVVAGISFGVACFQLVGIFLSYCLSRAITNNQYEIV 157
>ref|XP_531624.2| PREDICTED: similar to CD63 antigen (Melanoma-associated antigen
ME491) (Lysosome-associated membrane glycoprotein 3)
(LAMP-3) (Ocular melanoma-associated antigen) (OMA81H)
(Granulophysin) (Tetraspanin-30) (Tspan-30) [Canis
familiaris].
Length = 238
Score = 147 bits (370), Expect = 2e-35
Identities = 75/237 (31%), Positives = 128/237 (54%), Gaps = 1/237 (0%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFG 300
C+K LL + F V L+AVGV +L L I A + P V+I G + +
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIVQGATPGSLLPVVIIAVGAFLFLVA 68
Query: 301 LFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNG 480
GC C+ + ++ +A+FLSL+ L E+ A I+G+VFR ++ F + + + M+NY
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNKDFREQMKNYQK 128
Query: 481 NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNET-DCNPQDLHNLTVA 657
N+ + +D +Q CCG NYT+W T + +P SCC+N T DC ++
Sbjct: 129 NNHTASILDRMQEDFKCCGAANYTDWQTVSLMPKGQVPDSCCINVTKDC------GISFN 182
Query: 658 ATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 828
+ +GC + + ++ +N+ ++A A GIAF +++G++ ACCL + I + YE++
Sbjct: 183 VKNIYSEGCVEKIGGWLRSNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSG-YEVM 238
>ref|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [Canis familiaris].
Length = 259
Score = 128 bits (321), Expect = 1e-29
Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 14/247 (5%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL ++ FW+ G+ ++AVG+W YISL+A + A Y+L+ G ++V
Sbjct: 14 CLKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGVVVMVT 73
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVF----RHEIKDTFLRTYTDAM 465
G+ GC AT + +L+LY + L ++FL E++AGI +++ E+KD T T
Sbjct: 74 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNLKDTMT-KR 132
Query: 466 QNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE-----HGIPPSCCMNETDCNP 630
+ G++ + AVD +Q+ CCG N +W S + +P SCC
Sbjct: 133 YHQPGHEGVTSAVDKLQQEFHCCGSNNSQDWRDSEWIRSGQAGGRVVPDSCCKTVVPGCG 192
Query: 631 QDLHNLTVAATKVN----QKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSR 798
Q H + +V GC + +F++ ++ +I V GIA Q+ GM+ CCL +
Sbjct: 193 QRDHASNIYKVEVGWWMPGGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYK 252
Query: 799 FITANQY 819
+ Y
Sbjct: 253 SLKLEHY 259
>ref|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [Canis familiaris].
Length = 252
Score = 128 bits (321), Expect = 1e-29
Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 10/243 (4%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL ++ FW+ G+ ++AVG+W YISL+A + A Y+L+ G ++V
Sbjct: 14 CLKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGVVVMVT 73
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVF----RHEIKDTFLRTYTDAM 465
G+ GC AT + +L+LY + L ++FL E++AGI +++ E+KD T T
Sbjct: 74 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNLKDTMT-KR 132
Query: 466 QNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE-----HGIPPSCCMNETDCNP 630
+ G++ + AVD +Q+ CCG N +W S + +P SCC
Sbjct: 133 YHQPGHEGVTSAVDKLQQEFHCCGSNNSQDWRDSEWIRSGQAGGRVVPDSCCKTVVPGCG 192
Query: 631 QDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITA 810
Q H + + GC + +F++ ++ +I V GIA Q+ GM+ CCL + +
Sbjct: 193 QRDHASNIYKV---EGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYKSLKL 249
Query: 811 NQY 819
Y
Sbjct: 250 EHY 252
>ref|XP_544788.2| PREDICTED: similar to Tetraspanin-3 (Tspan-3) (Transmembrane 4
superfamily member 8) (Tetraspanin TM4-A) [Canis
familiaris].
Length = 424
Score = 118 bits (296), Expect = 9e-27
Identities = 73/218 (33%), Positives = 109/218 (50%), Gaps = 7/218 (3%)
Frame = +1
Query: 154 VFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVFGLFGCFATCRG 330
++W IL VG + +T Y + T P V+I G + + GL GC AT R
Sbjct: 190 IYWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLFIIGLIGCCATIRE 249
Query: 331 SPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGN--DERSRAV 504
S L + + L LVF+ E+V + G+V+R ++++ R+ + YNG D SRA+
Sbjct: 250 SRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAI 309
Query: 505 DHVQRSLSCCGVQNYTNWSTSPYFLE---HGIPPSCCM-NETDCNPQDLHNLTVAATKVN 672
D+VQR L CCG+ NY++W + +F E +P SCC + CN H + A
Sbjct: 310 DYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETASSCNGSLAHPSNLYA---- 365
Query: 673 QKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLAC 786
+GC LV ++ M + A A QL+GML AC
Sbjct: 366 -EGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCAC 402
>ref|XP_865890.1| PREDICTED: similar to transmembrane 4 superfamily member 17 isoform
b isoform 3 [Canis familiaris].
Length = 281
Score = 112 bits (281), Expect = 5e-25
Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 20/241 (8%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWG---KLTLGTYISLIAENSTNAPYVLIGTGTTIV 291
C K L ++ VFW+ G + LA+G+W K L +L + ++ I G +
Sbjct: 16 CGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFIVVGGVMS 75
Query: 292 VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQN 471
V G GC R + ++LK +++FL L+F EL GI FVF+ I+D + ++
Sbjct: 76 VLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNFFINNNVKA 135
Query: 472 YNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYF---------LEHGIPPSCCMNE--- 615
Y + + +D Q SCCG + +W+ + YF G+P SCC+ +
Sbjct: 136 YRDDIDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAE 195
Query: 616 ----TDCNPQDLHNLTVAAT-KVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLL 780
T C L + ++ KGC +++ N+ I+AGV GIA Q+ G+ L
Sbjct: 196 DVLNTQCGYDVRLRLELEQQGSIHTKGCVGQFEKWLQENLIIVAGVFVGIALLQIFGICL 255
Query: 781 A 783
A
Sbjct: 256 A 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,524,661
Number of extensions: 1200542
Number of successful extensions: 4523
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 4454
Number of HSP's successfully gapped: 35
Length of query: 364
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 260
Effective length of database: 15,407,560
Effective search space: 4005965600
Effective search space used: 4005965600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013188
(1093 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135059.1| PREDICTED: tetraspanin-7-like [Sus scrofa]. 512 e-145
Alignment gi|XP_001928715.1| PREDICTED: tetraspanin-6-like [Sus scrofa]. 300 7e-82
Alignment gi|XP_003355519.1| PREDICTED: CD63 antigen [Sus scrofa]. 148 6e-36
Alignment gi|XP_001929074.2| PREDICTED: tetraspanin-3 isoform 1 [Sus scro... 129 2e-30
Alignment gi|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrof... 128 5e-30
Alignment gi|NP_001138690.1| CD82 antigen [Sus scrofa]. 115 6e-26
Alignment gi|XP_003123704.1| PREDICTED: tetraspanin-17-like [Sus scrofa]. 112 5e-25
Alignment gi|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa]. 109 3e-24
Alignment gi|XP_003134729.1| PREDICTED: tetraspanin-33-like [Sus scrofa]. 108 4e-24
Alignment gi|NP_001070694.1| tetraspanin-9 [Sus scrofa]. 108 4e-24
>ref|XP_003135059.1| PREDICTED: tetraspanin-7-like [Sus scrofa].
Length = 249
Score = 512 bits (1318), Expect = e-145
Identities = 249/249 (100%), Positives = 249/249 (100%)
Frame = +1
Query: 82 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 261
MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY
Sbjct: 1 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 60
Query: 262 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 441
VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF
Sbjct: 61 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 120
Query: 442 LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD 621
LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD
Sbjct: 121 LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD 180
Query: 622 CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 801
CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF
Sbjct: 181 CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 240
Query: 802 ITANQYEMV 828
ITANQYEMV
Sbjct: 241 ITANQYEMV 249
>ref|XP_001928715.1| PREDICTED: tetraspanin-6-like [Sus scrofa].
Length = 245
Score = 300 bits (769), Expect = 7e-82
Identities = 145/248 (58%), Positives = 185/248 (74%), Gaps = 1/248 (0%)
Frame = +1
Query: 88 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 267
SRR++TKPVITC K++L+IY+F+FWITGVILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 5 SRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVL 64
Query: 268 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 447
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEIK++F
Sbjct: 65 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKN 124
Query: 448 TYTDAMQNYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDC 624
Y A++ YN D RS AVD +Q +L CCGV +Y +W + Y+ E G P SCC E C
Sbjct: 125 NYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKLE-GC 183
Query: 625 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 804
+PQ A KVN +GC+ V + +E+ MG++AG++FG+A QLIG+ LA CLSR I
Sbjct: 184 SPQR------DADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 237
Query: 805 TANQYEMV 828
T NQYE+V
Sbjct: 238 TNNQYEIV 245
>ref|XP_003355519.1| PREDICTED: CD63 antigen [Sus scrofa].
Length = 237
Score = 148 bits (373), Expect = 6e-36
Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 5/241 (2%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFG 300
C+K LL + F V L+AVG+W +L L I+ A + P V+I G + +
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAVGIWVQLVLNQTITQGATPGSLLPVVIIAVGAFLFLVA 68
Query: 301 LFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNG 480
GC TC+ + ++ +A+FLSL+ L E+ A I+G+VFR ++K F + + MQNY
Sbjct: 69 FVGCCGTCKENYCLMVTFAIFLSLIMLVEVAAAIAGYVFRDKVKAEFNKDFQQQMQNYPK 128
Query: 481 NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNET-----DCNPQDLHN 645
N+ + +D +Q CCG NYT+W +P SCC+N T + N +++HN
Sbjct: 129 NNHTALILDRMQEDFKCCGAANYTDWE-KILLSPKRVPDSCCVNVTQHCGVNFNVKEIHN 187
Query: 646 LTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEM 825
+GC + + S++ +N+ + A A GIAF +++G++ ACCL + I + YE+
Sbjct: 188 ----------EGCVEKIGSWLRSNVLVAAAAALGIAFVEVLGIVFACCLVKSIRSG-YEV 236
Query: 826 V 828
+
Sbjct: 237 M 237
>ref|XP_001929074.2| PREDICTED: tetraspanin-3 isoform 1 [Sus scrofa].
Length = 253
Score = 129 bits (325), Expect = 2e-30
Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 12/236 (5%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIV 291
IT KT+L+ + +FW IL VG + +T Y + T P V+I G +
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 292 VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQN 471
V GL GC AT R S L + + L LVF+ E+V + G+V+R ++++ R+ +
Sbjct: 66 VIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT 125
Query: 472 YNGN--DERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE---HGIPPSCCM-NETDCN-- 627
YNG D SRA+D+VQR L CCG+ NY++W + +F E +P SCC ++CN
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETSSNCNGS 185
Query: 628 ---PQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLAC 786
P DL++ +GC LV ++ M + A A QL+GML AC
Sbjct: 186 LAYPSDLYS----------EGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCAC 231
>ref|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrofa].
Length = 253
Score = 128 bits (322), Expect = 5e-30
Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 15/248 (6%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL ++ FW+ G+ ++AVG+W YISL+A + A Y+L+ G ++V
Sbjct: 15 CLKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGIVVMVT 74
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVF--------RHEIKDTFLRTY 453
G+ GC AT + +L+LY + L L+FL E++AG+ +V+ + +KDT + Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLLIFLLEIIAGVLAYVYYQQLSAELKANLKDTLSKRY 134
Query: 454 TDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFL-----EHGIPPSCCMN-E 615
G++ + A D +Q+ CCG N +W S + L + +P SCC
Sbjct: 135 RQP-----GHEGVTSATDKLQQEFHCCGSNNSQDWRDSEWILSGEAGDRVVPDSCCKTVV 189
Query: 616 TDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLS 795
C +D H + + GC + +F+ ++ II V GIA Q+ GM+ CCL
Sbjct: 190 AGCGRRD-HASNIYKV---EGGCITRLETFIREHLRIIGAVGIGIACVQVFGMIFTCCLY 245
Query: 796 RFITANQY 819
+ + Y
Sbjct: 246 KSLKLEHY 253
>ref|NP_001138690.1| CD82 antigen [Sus scrofa].
Length = 266
Score = 115 bits (287), Expect = 6e-26
Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 20/258 (7%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTN---APYVLIGTGTT 285
I K L +++ +F++ G ++L GVW ++IS++ +ST+ Y+ I G
Sbjct: 6 IKVTKYFLFLFNLLFFVLGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAF 65
Query: 286 IVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAM 465
++ G GC +L LY FL L+ +A++ AG+ + ++K T+ +
Sbjct: 66 TMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELI 125
Query: 466 QNYNGN--DERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHG---IPPSCCMNETDCNP 630
Q Y D A D+VQ + CCG ++ NW+ +P + H P SC + +
Sbjct: 126 QKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSS 185
Query: 631 QDL-----HNLTVA-------ATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGM 774
L H+L A V +GC + V ++++ N+GII GV G+A +L+GM
Sbjct: 186 LPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGM 245
Query: 775 LLACCLSRFITANQYEMV 828
LL+ L R I + Y V
Sbjct: 246 LLSMFLCRSIHSEDYSKV 263
>ref|XP_003123704.1| PREDICTED: tetraspanin-17-like [Sus scrofa].
Length = 281
Score = 112 bits (279), Expect = 5e-25
Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 20/241 (8%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWG---KLTLGTYISLIAENSTNAPYVLIGTGTTIV 291
C K L ++ VFW+ G + LA+G+W K L +L + ++ + G +
Sbjct: 16 CGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGLDPVWLFVVVGGIMS 75
Query: 292 VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQN 471
V G GC R + ++LK +++FL L+F EL GI FVF+ I+D + ++
Sbjct: 76 VLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNLFINNNVKA 135
Query: 472 YNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYF---------LEHGIPPSCCMNE--- 615
Y + + +D Q SCCG + +W+ + YF G+P SCC+ +
Sbjct: 136 YRDDIDLQNLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVRDPAE 195
Query: 616 ----TDCNPQDLHNLTVAAT-KVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLL 780
T C L + ++ KGC +++ N+ ++AGV GIA Q+ G+ L
Sbjct: 196 DVLNTQCGYDVRLKLELEQQGSIHTKGCVGQFEKWLQDNLIVVAGVFVGIALLQIFGICL 255
Query: 781 A 783
A
Sbjct: 256 A 256
>ref|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa].
Length = 268
Score = 109 bits (272), Expect = 3e-24
Identities = 64/254 (25%), Positives = 112/254 (44%), Gaps = 20/254 (7%)
Frame = +1
Query: 82 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWG---KLTLGTYISLIAENSTN 252
M+ + + V C+K + ++ +FW G+ L +G+W K L S+ +
Sbjct: 1 MSGKHYKGPEVSCCIKYFIFGFNVIFWFLGIAFLGIGLWAWNEKGVLSNISSITDLGGFD 60
Query: 253 APYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIK 432
++ + G + + G GC R + ++LK +++FL ++F EL AG+ FVF+ IK
Sbjct: 61 PVWLFLVVGGVMFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIK 120
Query: 433 DTFLRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYF---------LEH 585
D + ++ Y + + +D Q CCG +W+ + YF
Sbjct: 121 DQLYFFINNNIRAYRDDIDLQNLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASRERC 180
Query: 586 GIPPSCCMNE-------TDCNPQDLHNLTV-AATKVNQKGCYDLVTSFMETNMGIIAGVA 741
G+P SCC + T C V + KGC +++ N+ I+AG+
Sbjct: 181 GVPFSCCTKDPAEDVINTQCGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIF 240
Query: 742 FGIAFSQLIGMLLA 783
GIA Q+ G+ LA
Sbjct: 241 IGIALLQIFGICLA 254
>ref|XP_003134729.1| PREDICTED: tetraspanin-33-like [Sus scrofa].
Length = 283
Score = 108 bits (271), Expect = 4e-24
Identities = 65/240 (27%), Positives = 124/240 (51%), Gaps = 17/240 (7%)
Frame = +1
Query: 124 LKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGL 303
+K LL ++ +FW+ ++++AVG++ +L +L A + + +LI G + +
Sbjct: 22 VKYLLFFFNMLFWVISMVMVAVGIYARLMKHAEAAL-ACLAVDPAILLIVVGVLMFLLTF 80
Query: 304 FGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGN 483
GC + R + +L+ +++ L++VFL +L AG+ GFVF + + +A+ +Y +
Sbjct: 81 CGCIGSLRENICLLQTFSLCLTIVFLLQLAAGVLGFVFSDKARGKVNEIINNAIVHYRDD 140
Query: 484 DERSRAVDHVQRSLSCCGVQNYTNWSTSPYF---------LEHGIPPSCCM---NETDCN 627
+ +D Q+ CCG +Y +WS + YF +P SCC+ N+ N
Sbjct: 141 LDLQNLIDFGQKKFGCCGGISYKDWSLNMYFNCSEDNPSRERCSVPYSCCLPVPNQAVIN 200
Query: 628 P---QDLHNLTV--AATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCL 792
Q + L A+ + GC D + +++ +N+ ++ GVA G+A QL+G+LL+ L
Sbjct: 201 TMCGQGMQALDYLEASKIIYTNGCIDRLVNWIHSNLFVLGGVALGLAIPQLVGILLSMIL 260
>ref|NP_001070694.1| tetraspanin-9 [Sus scrofa].
Length = 239
Score = 108 bits (271), Expect = 4e-24
Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 6/242 (2%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAE-NSTNAPYVLIGTGTTIV 291
+ CLK ++ +++ +FW+ G LL VG+W ++ G + + S +A ++I GT ++
Sbjct: 6 LCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVM 65
Query: 292 VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQN 471
V G GC + + +L + + L ++ LAEL+ I FV+ ++ + + + +
Sbjct: 66 VTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENARKDLKEGLLL 125
Query: 472 YN--GNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCM-NETDCNPQDLH 642
YN N A + +Q + CCGV +YT+W P E+ +P CCM N C
Sbjct: 126 YNSENNVGLKNAWNIIQAEMHCCGVTDYTDW--YPVLGENTVPDRCCMENSQGCGRN--- 180
Query: 643 NLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI--TANQ 816
+ T + + GCY+ V + + N ++ V I Q++GM + L + I T +
Sbjct: 181 ----STTPLWKTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGKK 236
Query: 817 YE 822
Y+
Sbjct: 237 YD 238
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,208,971
Number of extensions: 792019
Number of successful extensions: 3152
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 3101
Number of HSP's successfully gapped: 27
Length of query: 364
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,854,232
Effective search space: 2337517248
Effective search space used: 2337517248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013188
(1093 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062608.2| tetraspanin-7 [Mus musculus]. 506 e-144
Alignment gi|NP_062630.2| tetraspanin-6 [Mus musculus]. 302 3e-82
Alignment gi|NP_001036045.1| CD63 antigen [Mus musculus]. 141 8e-34
Alignment gi|NP_031679.1| CD63 antigen [Mus musculus]. 141 8e-34
Alignment gi|XP_003086153.1| PREDICTED: CD63 antigen-like [Mus musculus]. 139 3e-33
Alignment gi|NP_001104520.1| CD151 antigen [Mus musculus]. 135 6e-32
Alignment gi|NP_001104519.1| CD151 antigen [Mus musculus]. 135 6e-32
Alignment gi|NP_033972.2| CD151 antigen [Mus musculus]. 135 6e-32
Alignment gi|NP_062767.3| tetraspanin-3 [Mus musculus]. 127 2e-29
Alignment gi|NP_031682.1| CD82 antigen isoform 1 [Mus musculus]. 122 5e-28
>ref|NP_062608.2| tetraspanin-7 [Mus musculus].
Length = 249
Score = 506 bits (1304), Expect = e-144
Identities = 246/249 (98%), Positives = 248/249 (99%)
Frame = +1
Query: 82 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 261
MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY
Sbjct: 1 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 60
Query: 262 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 441
VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF
Sbjct: 61 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 120
Query: 442 LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD 621
LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWS+SPYFL+HGIPPSCCMNETD
Sbjct: 121 LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSSSPYFLDHGIPPSCCMNETD 180
Query: 622 CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 801
CNP DLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF
Sbjct: 181 CNPLDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 240
Query: 802 ITANQYEMV 828
ITANQYEMV
Sbjct: 241 ITANQYEMV 249
>ref|NP_062630.2| tetraspanin-6 [Mus musculus].
Length = 245
Score = 302 bits (774), Expect = 3e-82
Identities = 147/248 (59%), Positives = 187/248 (75%), Gaps = 1/248 (0%)
Frame = +1
Query: 88 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 267
SRR++TKPVITCLK++L+IY+F+FWITGVILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 5 SRRLQTKPVITCLKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVL 64
Query: 268 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 447
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEIK++F
Sbjct: 65 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKS 124
Query: 448 TYTDAMQNYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDC 624
Y +A++ YN D RS AVD +Q +L CCGV NY +W + Y+ E G P SCC E C
Sbjct: 125 NYENALKEYNSTGDYRSEAVDKIQSTLHCCGVTNYGDWKGTNYYSETGFPKSCCKLE-GC 183
Query: 625 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 804
PQ A KVN++GC+ V + +E+ MG++AG++FG+A QLIG+ LA CLSR I
Sbjct: 184 YPQR------DADKVNEEGCFIKVMTTIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 237
Query: 805 TANQYEMV 828
T NQYE+V
Sbjct: 238 TNNQYEIV 245
>ref|NP_001036045.1| CD63 antigen [Mus musculus].
Length = 238
Score = 141 bits (356), Expect = 8e-34
Identities = 71/236 (30%), Positives = 129/236 (54%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFG 300
C+K LL + F V L+A+GV ++ L I+ + P V+I G + +
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAIGVAVQVVLKQAITHETTAGSLLPVVIIAVGAFLFLVA 68
Query: 301 LFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNG 480
GC C+ + ++ +A+FLSL+ L E+ I+G+VFR ++K F +++ MQNY
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEFNKSFQQQMQNYLK 128
Query: 481 NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAA 660
+++ + +D +Q+ +CCG NYT+W P + +P SCC+N T D T
Sbjct: 129 DNKTATILDKLQKENNCCGASNYTDWENIPGMAKDRVPDSCCINITVGCGNDFKEST--- 185
Query: 661 TKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 828
++ +GC + + ++ N+ ++A A GIAF +++G++ +CCL + I + YE++
Sbjct: 186 --IHTQGCVETIAIWLRKNILLVAAAALGIAFVEVLGIIFSCCLVKSIRSG-YEVM 238
>ref|NP_031679.1| CD63 antigen [Mus musculus].
Length = 238
Score = 141 bits (356), Expect = 8e-34
Identities = 71/236 (30%), Positives = 129/236 (54%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFG 300
C+K LL + F V L+A+GV ++ L I+ + P V+I G + +
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAIGVAVQVVLKQAITHETTAGSLLPVVIIAVGAFLFLVA 68
Query: 301 LFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNG 480
GC C+ + ++ +A+FLSL+ L E+ I+G+VFR ++K F +++ MQNY
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEFNKSFQQQMQNYLK 128
Query: 481 NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAA 660
+++ + +D +Q+ +CCG NYT+W P + +P SCC+N T D T
Sbjct: 129 DNKTATILDKLQKENNCCGASNYTDWENIPGMAKDRVPDSCCINITVGCGNDFKEST--- 185
Query: 661 TKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 828
++ +GC + + ++ N+ ++A A GIAF +++G++ +CCL + I + YE++
Sbjct: 186 --IHTQGCVETIAIWLRKNILLVAAAALGIAFVEVLGIIFSCCLVKSIRSG-YEVM 238
>ref|XP_003086153.1| PREDICTED: CD63 antigen-like [Mus musculus].
Length = 238
Score = 139 bits (351), Expect = 3e-33
Identities = 68/235 (28%), Positives = 126/235 (53%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFG 300
C+K LL + F V L+A+GV ++ L I+ + P ++I G + +
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAIGVAVQVVLKQAITHETTAGSLLPVIIIAVGAFLFLVA 68
Query: 301 LFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNG 480
GC C+ + ++ +A+FLSL+ L E+ I+G+VFR ++K F +++ MQNY
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEFNKSFQQQMQNYLK 128
Query: 481 NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAA 660
+++ + +D +Q+ +CCG NYT+W P + +P +CC+N T D T
Sbjct: 129 DNKTATILDKLQKENNCCGASNYTDWENIPGMAKDRVPDACCINITVGCGNDFKEST--- 185
Query: 661 TKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEM 825
++ +GC + + ++ N+ ++A A GIAF +++G++ +CCL + I + M
Sbjct: 186 --IHTQGCVETIAIWLRKNILLVAAAALGIAFVEVLGIIFSCCLVKSIRSGHEVM 238
>ref|NP_001104520.1| CD151 antigen [Mus musculus].
Length = 253
Score = 135 bits (340), Expect = 6e-32
Identities = 78/248 (31%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL Y+ FW+ G+ ++AVG+W YISL+A ++ A Y+L+ G ++V
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYILVVAGVVVMVT 74
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVF--------RHEIKDTFLRTY 453
G+ GC AT + +L+LY + L ++FL E++AGI +V+ + +KDT ++ Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKDTMVKRY 134
Query: 454 TDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFL-----EHGIPPSCCMN-E 615
+ +G++ S AVD +Q+ CCG N +W S + +P SCC
Sbjct: 135 -----HQSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWIRSGEADSRVVPDSCCKTMV 189
Query: 616 TDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLS 795
C +D H + + GC + +F++ ++ +I V GIA Q+ GM+ CCL
Sbjct: 190 AGCGKRD-HASNIYKV---EGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLY 245
Query: 796 RFITANQY 819
R + Y
Sbjct: 246 RSLKLEHY 253
>ref|NP_001104519.1| CD151 antigen [Mus musculus].
Length = 253
Score = 135 bits (340), Expect = 6e-32
Identities = 78/248 (31%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL Y+ FW+ G+ ++AVG+W YISL+A ++ A Y+L+ G ++V
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYILVVAGVVVMVT 74
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVF--------RHEIKDTFLRTY 453
G+ GC AT + +L+LY + L ++FL E++AGI +V+ + +KDT ++ Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKDTMVKRY 134
Query: 454 TDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFL-----EHGIPPSCCMN-E 615
+ +G++ S AVD +Q+ CCG N +W S + +P SCC
Sbjct: 135 -----HQSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWIRSGEADSRVVPDSCCKTMV 189
Query: 616 TDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLS 795
C +D H + + GC + +F++ ++ +I V GIA Q+ GM+ CCL
Sbjct: 190 AGCGKRD-HASNIYKV---EGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLY 245
Query: 796 RFITANQY 819
R + Y
Sbjct: 246 RSLKLEHY 253
>ref|NP_033972.2| CD151 antigen [Mus musculus].
Length = 253
Score = 135 bits (340), Expect = 6e-32
Identities = 78/248 (31%), Positives = 128/248 (51%), Gaps = 15/248 (6%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL Y+ FW+ G+ ++AVG+W YISL+A ++ A Y+L+ G ++V
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYILVVAGVVVMVT 74
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVF--------RHEIKDTFLRTY 453
G+ GC AT + +L+LY + L ++FL E++AGI +V+ + +KDT ++ Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKDTMVKRY 134
Query: 454 TDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFL-----EHGIPPSCCMN-E 615
+ +G++ S AVD +Q+ CCG N +W S + +P SCC
Sbjct: 135 -----HQSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWIRSGEADSRVVPDSCCKTMV 189
Query: 616 TDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLS 795
C +D H + + GC + +F++ ++ +I V GIA Q+ GM+ CCL
Sbjct: 190 AGCGKRD-HASNIYKV---EGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLY 245
Query: 796 RFITANQY 819
R + Y
Sbjct: 246 RSLKLEHY 253
>ref|NP_062767.3| tetraspanin-3 [Mus musculus].
Length = 253
Score = 127 bits (319), Expect = 2e-29
Identities = 79/236 (33%), Positives = 118/236 (50%), Gaps = 12/236 (5%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIV 291
IT KT+L+ + +FW IL VG + +T Y + T P V+I G +
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLFPAVVIIAVGALLF 65
Query: 292 VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQN 471
+ GL GC AT R S L + L LVF+ E+V + G+V+R ++++ R+ +
Sbjct: 66 IIGLIGCCATIRESRCGLATFVFILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT 125
Query: 472 YNG--NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE---HGIPPSCC------MNET 618
YNG +D SRA+D+VQR L CCG+ NY++W + +F E +P SCC N +
Sbjct: 126 YNGTNSDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAKSCNGS 185
Query: 619 DCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLAC 786
NP DL+ +GC LV ++ + + A A QL+GML AC
Sbjct: 186 LANPSDLY----------AEGCEALVVKKLQEILMHVIWAALAFAAIQLLGMLCAC 231
>ref|NP_031682.1| CD82 antigen isoform 1 [Mus musculus].
Length = 266
Score = 122 bits (306), Expect = 5e-28
Identities = 73/254 (28%), Positives = 125/254 (49%), Gaps = 20/254 (7%)
Frame = +1
Query: 127 KTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTN---APYVLIGTGTTIVVF 297
K L +++ +F+I G ++L GVW ++IS++ +S++ YV IG G +V
Sbjct: 10 KYFLFLFNLLFFILGAVILGFGVWILADKNSFISVLQTSSSSLQVGAYVFIGVGAITIVM 69
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNY- 474
G GC +L LY +FL L+ +A++ G+ + ++K T D ++NY
Sbjct: 70 GFLGCIGAVNEVRCLLGLYFVFLLLILIAQVTVGVLFYFNADKLKKEMGNTVMDIIRNYT 129
Query: 475 -NGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPY---FLEHGIPPSCCMNETDCNPQ--- 633
N R A D+VQ + CCG ++ NW+ + F + P SC + + N
Sbjct: 130 ANATSSREEAWDYVQAQVKCCGWVSHYNWTENEELMGFTKTTYPCSCEKIKEEDNQLIVK 189
Query: 634 ----DLHNLTVAATK-----VNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLAC 786
+ N TV+ VN +GC + ++++ N GI+ GV G+A +L+G+ L+
Sbjct: 190 KGFCEADNSTVSENNPEDWPVNTEGCMEKAQAWLQENFGILLGVCAGVAVIELLGLFLSI 249
Query: 787 CLSRFITANQYEMV 828
CL R+I + Y V
Sbjct: 250 CLCRYIHSEDYSKV 263
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,496,180
Number of extensions: 1009542
Number of successful extensions: 3789
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 3727
Number of HSP's successfully gapped: 33
Length of query: 364
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 261
Effective length of database: 12,523,851
Effective search space: 3268725111
Effective search space used: 3268725111
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013188
(1093 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004606.2| tetraspanin-7 [Homo sapiens]. 509 e-144
Alignment gi|NP_003261.1| tetraspanin-6 [Homo sapiens]. 302 4e-82
Alignment gi|NP_001771.1| CD63 antigen isoform A [Homo sapiens]. 144 2e-34
Alignment gi|NP_001035123.1| CD63 antigen isoform B [Homo sapiens]. 139 6e-33
Alignment gi|NP_001034579.1| CD151 antigen [Homo sapiens]. 134 2e-31
Alignment gi|NP_620598.1| CD151 antigen [Homo sapiens]. 134 2e-31
Alignment gi|NP_620599.1| CD151 antigen [Homo sapiens]. 134 2e-31
Alignment gi|NP_004348.2| CD151 antigen [Homo sapiens]. 134 2e-31
Alignment gi|NP_005715.1| tetraspanin-3 isoform 1 [Homo sapiens]. 129 6e-30
Alignment gi|NP_002222.1| CD82 antigen isoform 1 [Homo sapiens]. 118 1e-26
>ref|NP_004606.2| tetraspanin-7 [Homo sapiens].
Length = 249
Score = 509 bits (1312), Expect = e-144
Identities = 248/249 (99%), Positives = 248/249 (99%)
Frame = +1
Query: 82 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 261
MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY
Sbjct: 1 MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPY 60
Query: 262 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 441
VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF
Sbjct: 61 VLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTF 120
Query: 442 LRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD 621
LRTYTDAMQ YNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD
Sbjct: 121 LRTYTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETD 180
Query: 622 CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 801
CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF
Sbjct: 181 CNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRF 240
Query: 802 ITANQYEMV 828
ITANQYEMV
Sbjct: 241 ITANQYEMV 249
>ref|NP_003261.1| tetraspanin-6 [Homo sapiens].
Length = 245
Score = 302 bits (773), Expect = 4e-82
Identities = 146/248 (58%), Positives = 185/248 (74%), Gaps = 1/248 (0%)
Frame = +1
Query: 88 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 267
SRR++TKPVITC K++L+IY+F+FWITGVILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 5 SRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVL 64
Query: 268 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 447
I TGT I++ G FGCFATCR S WMLKLYAMFL+LVFL ELVA I GFVFRHEIK++F
Sbjct: 65 IATGTVIILLGTFGCFATCRASAWMLKLYAMFLTLVFLVELVAAIVGFVFRHEIKNSFKN 124
Query: 448 TYTDAMQNYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDC 624
Y A++ YN D RS AVD +Q +L CCGV +Y +W+ + Y+ E G P SCC E DC
Sbjct: 125 NYEKALKQYNSTGDYRSHAVDKIQNTLHCCGVTDYRDWTDTNYYSEKGFPKSCCKLE-DC 183
Query: 625 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 804
PQ A KVN +GC+ V + +E+ MG++AG++FG+A QLIG+ LA CLSR I
Sbjct: 184 TPQR------DADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 237
Query: 805 TANQYEMV 828
T NQYE+V
Sbjct: 238 TNNQYEIV 245
>ref|NP_001771.1| CD63 antigen isoform A [Homo sapiens].
Length = 238
Score = 144 bits (362), Expect = 2e-34
Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 1/237 (0%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFG 300
C+K LL + F V L+AVGV +L L I A + P V+I G + +
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVGVFLFLVA 68
Query: 301 LFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNG 480
GC C+ + ++ +A+FLSL+ L E+ A I+G+VFR ++ F + M+NY
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPK 128
Query: 481 NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNET-DCNPQDLHNLTVA 657
N+ + +D +Q CCG NYT+W P ++ +P SCC+N T C +
Sbjct: 129 NNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGC------GINFN 182
Query: 658 ATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 828
++++GC + + ++ N+ ++A A GIAF +++G++ ACCL + I + YE++
Sbjct: 183 EKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSG-YEVM 238
>ref|NP_001035123.1| CD63 antigen isoform B [Homo sapiens].
Length = 236
Score = 139 bits (349), Expect = 6e-33
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 1/237 (0%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFG 300
C+K LL + F V L+AVGV +L L I A + P V+I G + +
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVGVFLFLVA 68
Query: 301 LFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNG 480
GC C+ + ++ +A+FLSL+ L E+ A I+G+VFR ++ F + M+NY
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPK 128
Query: 481 NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNET-DCNPQDLHNLTVA 657
N+ + +D +Q CCG NYT+W P ++ +P SCC+N T C +
Sbjct: 129 NNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGC------GINFN 182
Query: 658 ATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV 828
++++GC + + ++ N+ ++A A GIAF ++G++ ACCL + I + YE++
Sbjct: 183 EKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAF--VLGIVFACCLVKSIRSG-YEVM 236
>ref|NP_001034579.1| CD151 antigen [Homo sapiens].
Length = 253
Score = 134 bits (336), Expect = 2e-31
Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL Y+ FW+ G+ ++AVG+W YISL+A + A Y+L+ GT ++V
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVVMVT 74
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAM-QNY 474
G+ GC AT + +L+LY + L ++FL E++AGI + + ++ D M + Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMTKRY 134
Query: 475 N--GNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHG-----IPPSCCMNETDCNPQ 633
+ G++ + AVD +Q+ CCG N +W S + +P SCC Q
Sbjct: 135 HQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVALCGQ 194
Query: 634 DLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITAN 813
H + + GC + +F++ ++ +I V GIA Q+ GM+ CCL R +
Sbjct: 195 RDHASNIYKV---EGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLE 251
Query: 814 QY 819
Y
Sbjct: 252 HY 253
>ref|NP_620598.1| CD151 antigen [Homo sapiens].
Length = 253
Score = 134 bits (336), Expect = 2e-31
Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL Y+ FW+ G+ ++AVG+W YISL+A + A Y+L+ GT ++V
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVVMVT 74
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAM-QNY 474
G+ GC AT + +L+LY + L ++FL E++AGI + + ++ D M + Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMTKRY 134
Query: 475 N--GNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHG-----IPPSCCMNETDCNPQ 633
+ G++ + AVD +Q+ CCG N +W S + +P SCC Q
Sbjct: 135 HQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVALCGQ 194
Query: 634 DLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITAN 813
H + + GC + +F++ ++ +I V GIA Q+ GM+ CCL R +
Sbjct: 195 RDHASNIYKV---EGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLE 251
Query: 814 QY 819
Y
Sbjct: 252 HY 253
>ref|NP_620599.1| CD151 antigen [Homo sapiens].
Length = 253
Score = 134 bits (336), Expect = 2e-31
Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL Y+ FW+ G+ ++AVG+W YISL+A + A Y+L+ GT ++V
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVVMVT 74
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAM-QNY 474
G+ GC AT + +L+LY + L ++FL E++AGI + + ++ D M + Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMTKRY 134
Query: 475 N--GNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHG-----IPPSCCMNETDCNPQ 633
+ G++ + AVD +Q+ CCG N +W S + +P SCC Q
Sbjct: 135 HQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVALCGQ 194
Query: 634 DLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITAN 813
H + + GC + +F++ ++ +I V GIA Q+ GM+ CCL R +
Sbjct: 195 RDHASNIYKV---EGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLE 251
Query: 814 QY 819
Y
Sbjct: 252 HY 253
>ref|NP_004348.2| CD151 antigen [Homo sapiens].
Length = 253
Score = 134 bits (336), Expect = 2e-31
Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Frame = +1
Query: 121 CLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 297
CLK LL Y+ FW+ G+ ++AVG+W YISL+A + A Y+L+ GT ++V
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVVMVT 74
Query: 298 GLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAM-QNY 474
G+ GC AT + +L+LY + L ++FL E++AGI + + ++ D M + Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMTKRY 134
Query: 475 N--GNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHG-----IPPSCCMNETDCNPQ 633
+ G++ + AVD +Q+ CCG N +W S + +P SCC Q
Sbjct: 135 HQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVALCGQ 194
Query: 634 DLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITAN 813
H + + GC + +F++ ++ +I V GIA Q+ GM+ CCL R +
Sbjct: 195 RDHASNIYKV---EGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLE 251
Query: 814 QY 819
Y
Sbjct: 252 HY 253
>ref|NP_005715.1| tetraspanin-3 isoform 1 [Homo sapiens].
Length = 253
Score = 129 bits (323), Expect = 6e-30
Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 7/231 (3%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIV 291
IT KT+L+ + +FW IL VG + +T Y + T P V+I G +
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 292 VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQN 471
+ GL GC AT R S L + + L LVF+ E+V + G+V+R ++++ R+ +
Sbjct: 66 IIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT 125
Query: 472 YNGN--DERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLE---HGIPPSCCM-NETDCNPQ 633
YNG D SRA+D+VQR L CCG+ NY++W + +F E +P SCC ++CN
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETASNCNGS 185
Query: 634 DLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLAC 786
H + A +GC LV ++ M + A A QL+GML AC
Sbjct: 186 LAHPSDLYA-----EGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCAC 231
>ref|NP_002222.1| CD82 antigen isoform 1 [Homo sapiens].
Length = 267
Score = 118 bits (295), Expect = 1e-26
Identities = 74/259 (28%), Positives = 128/259 (49%), Gaps = 21/259 (8%)
Frame = +1
Query: 115 ITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTN---APYVLIGTGTT 285
I K L +++ +F+I G ++L GVW ++IS++ +S++ YV IG G
Sbjct: 6 IKVTKYFLFLFNLIFFILGAVILGFGVWILADKSSFISVLQTSSSSLRMGAYVFIGVGAV 65
Query: 286 IVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAM 465
++ G GC +L LY FL L+ +A++ AG + ++K T+ +
Sbjct: 66 TMLMGFLGCIGAVNEVRCLLGLYFAFLLLILIAQVTAGALFYFNMGKLKQEMGGIVTELI 125
Query: 466 QNYNGNDERSR--AVDHVQRSLSCCGVQNYTNWSTSPYFL---EHGIPPSCCMNETDCNP 630
++YN + E S A D+VQ + CCG ++ NW+ + + E P SC + + N
Sbjct: 126 RDYNSSREDSLQDAWDYVQAQVKCCGWVSFYNWTDNAELMNRPEVTYPCSCEVKGEEDNS 185
Query: 631 QDLH--------NLTVAATK-----VNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIG 771
+ N T + V Q+GC + V ++++ N+GII GV G+A +L+G
Sbjct: 186 LSVRKGFCEAPGNRTQSGNHPEDWPVYQEGCMEKVQAWLQENLGIILGVGVGVAIIELLG 245
Query: 772 MLLACCLSRFITANQYEMV 828
M+L+ CL R + + Y V
Sbjct: 246 MVLSICLCRHVHSEDYSKV 264
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,964,841
Number of extensions: 1192152
Number of successful extensions: 4784
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 4700
Number of HSP's successfully gapped: 43
Length of query: 364
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,868,908
Effective search space: 3865916080
Effective search space used: 3865916080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013188
(1093 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 492 e-136
>Sscrofa_ChrX
|| Length = 144288218
Score = 492 bits (248), Expect = e-136
Identities = 257/260 (98%)
Strand = Plus / Plus
Query: 834 agtctttcaacaacgatggagtaagagacctgtttccaaaaggcatggcagcaatctttg 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38623184 agtctttcaacaacgatggagtaagagacctgtttccaaaaggcatggcagcaatctttg 38623243
Query: 894 aaagacctccaaagaatgttagagcacagtacctagtacacctgtcctaaccctcccacc 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38623244 aaagacctccaaagaatgttagagcacagtacctagtacacctgtcctaaccctcccacc 38623303
Query: 954 ccgcgtgcaactgactctcccacacagcctctgctccatcgttccgcctgcttcatgcat 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38623304 ccgcgtgcaactgactctcccacacagcctctgctccatcgttccgcctgcttcatgcat 38623363
Query: 1014 agcgttccattttgtgaagccctgttgtgccagaatgtaaccaggttccctgcatctagt 1073
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 38623364 agcgttccattttgtgaagccctgttgtgccagagtgtagccaggttccctgcatctagt 38623423
Query: 1074 ccaaggggaacccacctgag 1093
||||||||| ||||||||||
Sbjct: 38623424 ccaaggggaccccacctgag 38623443
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 162 gatcactggcgtgatcctgctggccgtcggagtctggggcaagctcactctgggcaccta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38599680 gatcactggcgtgatcctgctggccgtcggagtctggggcaagctcactctgggcaccta 38599739
Query: 222 tatctccctcattgccgagaactccacaaatgccccctacgtgctcatcggaactggcac 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38599740 tatctccctcattgccgagaactccacaaatgccccctacgtgctcatcggaactggcac 38599799
Query: 282 cactatcgtcgtttttggcctgttcggatgctttgccacatgccgtggtagcccatggat 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38599800 cactatcgtcgtttttggcctgttcggatgctttgccacatgccgtggtagcccatggat 38599859
Query: 342 gctgaaactg 351
||||||||||
Sbjct: 38599860 gctgaaactg 38599869
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 162 gatcactggcgtgatcctgctggccgtcggagtctggggcaagctcactctgggcaccta 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38785177 gatcactggcgtgatcctgctggccgtcggagtctggggcaagctcactctgggcaccta 38785118
Query: 222 tatctccctcattgccgagaactccacaaatgccccctacgtgctcatcggaactggcac 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38785117 tatctccctcattgccgagaactccacaaatgccccctacgtgctcatcggaactggcac 38785058
Query: 282 cactatcgtcgtttttggcctgttcggatgctttgccacatgccgtggtagcccatggat 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38785057 cactatcgtcgtttttggcctgttcggatgctttgccacatgccgtggtagcccatggat 38784998
Query: 342 gctgaaactg 351
||||||||||
Sbjct: 38784997 gctgaaactg 38784988
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 523 ctgagctgctgtggcgtgcagaactacaccaactggagcaccagcccctacttcctggag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38609220 ctgagctgctgtggcgtgcagaactacaccaactggagcaccagcccctacttcctggag 38609279
Query: 583 cacggcatccccccgagctgctgcatgaacgagaccgactgcaatccccaggacctgcac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38609280 cacggcatccccccgagctgctgcatgaacgagaccgactgcaatccccaggacctgcac 38609339
Query: 643 aacctgaccgtggctgccactaaagtgaaccagaagg 679
|||||||||||||||||||||||||||||||||||||
Sbjct: 38609340 aacctgaccgtggctgccactaaagtgaaccagaagg 38609376
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 523 ctgagctgctgtggcgtgcagaactacaccaactggagcaccagcccctacttcctggag 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38775637 ctgagctgctgtggcgtgcagaactacaccaactggagcaccagcccctacttcctggag 38775578
Query: 583 cacggcatccccccgagctgctgcatgaacgagaccgactgcaatccccaggacctgcac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38775577 cacggcatccccccgagctgctgcatgaacgagaccgactgcaatccccaggacctgcac 38775518
Query: 643 aacctgaccgtggctgccactaaagtgaaccagaagg 679
|||||||||||||||||||||||||||||||||||||
Sbjct: 38775517 aacctgaccgtggctgccactaaagtgaaccagaagg 38775481
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 425 agatcaaggacaccttcctgagaacttacacggacgccatgcagaattacaatggcaacg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38607707 agatcaaggacaccttcctgagaacttacacggacgccatgcagaattacaatggcaacg 38607766
Query: 485 acgagaggagccgggctgtggatcatgtgcagcgcagc 522
||||||||||||||||||||||||||||||||||||||
Sbjct: 38607767 acgagaggagccgggctgtggatcatgtgcagcgcagc 38607804
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 425 agatcaaggacaccttcctgagaacttacacggacgccatgcagaattacaatggcaacg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38777150 agatcaaggacaccttcctgagaacttacacggacgccatgcagaattacaatggcaacg 38777091
Query: 485 acgagaggagccgggctgtggatcatgtgcagcgcagc 522
||||||||||||||||||||||||||||||||||||||
Sbjct: 38777090 acgagaggagccgggctgtggatcatgtgcagcgcagc 38777053
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 71 agctctgtagtatggcatcgaggagaatggagaccaaacctgtgataacctgtctcaaaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38434867 agctctgtagtatggcatcgaggagaatggagaccaaacctgtgataacctgtctcaaaa 38434926
Query: 131 ccctcctcatcatctactccttcgtcttctgg 162
||||||||||||||||||||||||||||||||
Sbjct: 38434927 ccctcctcatcatctactccttcgtcttctgg 38434958
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 677 agggctgttatgatctggtgaccagtttcatggagaccaacatggggatcatcgcgggag 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38615091 agggctgttatgatctggtgaccagtttcatggagaccaacatggggatcatcgcgggag 38615150
Query: 737 tggcttttggaatcgcattctcccag 762
||||||||||||||||||||||||||
Sbjct: 38615151 tggcttttggaatcgcattctcccag 38615176
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 677 agggctgttatgatctggtgaccagtttcatggagaccaacatggggatcatcgcgggag 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38769766 agggctgttatgatctggtgaccagtttcatggagaccaacatggggatcatcgcgggag 38769707
Query: 737 tggcttttggaatcgcattctcccag 762
||||||||||||||||||||||||||
Sbjct: 38769706 tggcttttggaatcgcattctcccag 38769681
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 351 gtatgccatgtttctgtccctggtgttcctggctgagctcgtcgctggcatttcaggctt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38604408 gtatgccatgtttctgtccctggtgttcctggctgagctcgtcgctggcatttcaggctt 38604467
Query: 411 tgtgtttcgccatgag 426
||||||||||||||||
Sbjct: 38604468 tgtgtttcgccatgag 38604483
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 760 cagctgattggcatgctgctggcctgctgcctgtcccggttcatcacggccaaccagtat 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38622888 cagctgattggcatgctgctggcctgctgcctgtcccggttcatcacggccaaccagtat 38622947
Query: 820 gagatggtgtaaggag 835
||||||||||||||||
Sbjct: 38622948 gagatggtgtaaggag 38622963
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 351 gtatgccatgtttctgtccctggtgttcctggctgagctcgtcgctggcatttcaggctt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38780449 gtatgccatgtttctgtccctggtgttcctggctgagctcgtcgctggcatttcaggctt 38780390
Query: 411 tgtgtttcgccatgag 426
||||||||||||||||
Sbjct: 38780389 tgtgtttcgccatgag 38780374
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,468,471
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 13
Length of query: 1093
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1072
Effective length of database: 2,808,413,156
Effective search space: 3010618903232
Effective search space used: 3010618903232
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)