Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013192
(1015 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851002.1| PREDICTED: similar to vasopressin-induced prote... 244 7e-65
Alignment gi|XP_862888.1| PREDICTED: hypothetical protein XP_857795 [Cani... 50 3e-06
>ref|XP_851002.1| PREDICTED: similar to vasopressin-induced protein, 32kDa [Canis
familiaris].
Length = 148
Score = 244 bits (624), Expect = 7e-65
Identities = 122/148 (82%), Positives = 124/148 (83%)
Frame = +3
Query: 393 MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 572
MGTPASVVSEPP WQAP EARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE
Sbjct: 1 MGTPASVVSEPPLWQAPAEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 60
Query: 573 CAGDQRVAEAXXXXXXXXXXXXXXXDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY 752
CAGD RVAEA HSLHHCSRLRIPEP APLANPQS +TETAS +QY
Sbjct: 61 CAGDHRVAEALRRLRRKRPPRLKPLAHSLHHCSRLRIPEPCAPLANPQSGSTETASGDQY 120
Query: 753 LNSRRTSARIRRNWGKPGPTGYLHQIRH 836
LNSRRTSARIRRNW KPGPT YLHQIRH
Sbjct: 121 LNSRRTSARIRRNWKKPGPTSYLHQIRH 148
>ref|XP_862888.1| PREDICTED: hypothetical protein XP_857795 [Canis familiaris].
Length = 154
Score = 50.4 bits (119), Expect = 3e-06
Identities = 26/45 (57%), Positives = 30/45 (66%)
Frame = -1
Query: 136 GPKWTWGFGSLLHPCSDGAPTHFHRSARQAADLRTWPPKAGHLGH 2
GPK T G G SDG P HRSA +A++LRTW P+AGHLGH
Sbjct: 3 GPKRTPGSGPS-GTGSDGPPARSHRSASRASELRTWLPEAGHLGH 46
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,666,758
Number of extensions: 1503943
Number of successful extensions: 8218
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7950
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013192
(1015 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029932.1| arginine vasopressin-induced protein 1 [Bos ... 218 5e-57
>ref|NP_001029932.1| arginine vasopressin-induced protein 1 [Bos taurus].
Length = 144
Score = 218 bits (556), Expect = 5e-57
Identities = 111/148 (75%), Positives = 117/148 (79%)
Frame = +3
Query: 393 MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 572
MGTPASVVSEPPPW+AP E RGRKQA+ANIFQDAELLQIQGLFQRSGDQLAEERAQI+WE
Sbjct: 1 MGTPASVVSEPPPWRAPPEVRGRKQAAANIFQDAELLQIQGLFQRSGDQLAEERAQIVWE 60
Query: 573 CAGDQRVAEAXXXXXXXXXXXXXXXDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY 752
CAGD RVAEA S+HHCSRLR EP A PQS ATETASSEQ+
Sbjct: 61 CAGDHRVAEALKRLRRKRPPRQKPLGPSVHHCSRLRTAEPCA----PQSRATETASSEQH 116
Query: 753 LNSRRTSARIRRNWGKPGPTGYLHQIRH 836
+NSRR SARIRRNW KPGPT YLHQIRH
Sbjct: 117 VNSRRASARIRRNWRKPGPTSYLHQIRH 144
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,796,181
Number of extensions: 1462660
Number of successful extensions: 7672
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7609
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013192
(1015 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359365.1| PREDICTED: arginine vasopressin-induced prot... 270 7e-73
Alignment gi|XP_001929095.1| PREDICTED: arginine vasopressin-induced prot... 270 7e-73
Alignment gi|XP_001929094.1| PREDICTED: arginine vasopressin-induced prot... 270 7e-73
>ref|XP_003359365.1| PREDICTED: arginine vasopressin-induced protein 1 [Sus scrofa].
Length = 148
Score = 270 bits (691), Expect = 7e-73
Identities = 133/148 (89%), Positives = 133/148 (89%)
Frame = +3
Query: 393 MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 572
MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE
Sbjct: 1 MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 60
Query: 573 CAGDQRVAEAXXXXXXXXXXXXXXXDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY 752
CAGDQRVAEA DHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY
Sbjct: 61 CAGDQRVAEALKRLRRKRPPRQKPLDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY 120
Query: 753 LNSRRTSARIRRNWGKPGPTGYLHQIRH 836
LNSRRTSARIRRNWGKPGPTGYLHQIRH
Sbjct: 121 LNSRRTSARIRRNWGKPGPTGYLHQIRH 148
>ref|XP_001929095.1| PREDICTED: arginine vasopressin-induced protein 1 isoform 2 [Sus
scrofa].
Length = 148
Score = 270 bits (691), Expect = 7e-73
Identities = 133/148 (89%), Positives = 133/148 (89%)
Frame = +3
Query: 393 MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 572
MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE
Sbjct: 1 MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 60
Query: 573 CAGDQRVAEAXXXXXXXXXXXXXXXDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY 752
CAGDQRVAEA DHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY
Sbjct: 61 CAGDQRVAEALKRLRRKRPPRQKPLDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY 120
Query: 753 LNSRRTSARIRRNWGKPGPTGYLHQIRH 836
LNSRRTSARIRRNWGKPGPTGYLHQIRH
Sbjct: 121 LNSRRTSARIRRNWGKPGPTGYLHQIRH 148
>ref|XP_001929094.1| PREDICTED: arginine vasopressin-induced protein 1 isoform 1 [Sus
scrofa].
Length = 148
Score = 270 bits (691), Expect = 7e-73
Identities = 133/148 (89%), Positives = 133/148 (89%)
Frame = +3
Query: 393 MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 572
MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE
Sbjct: 1 MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 60
Query: 573 CAGDQRVAEAXXXXXXXXXXXXXXXDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY 752
CAGDQRVAEA DHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY
Sbjct: 61 CAGDQRVAEALKRLRRKRPPRQKPLDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY 120
Query: 753 LNSRRTSARIRRNWGKPGPTGYLHQIRH 836
LNSRRTSARIRRNWGKPGPTGYLHQIRH
Sbjct: 121 LNSRRTSARIRRNWGKPGPTGYLHQIRH 148
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,029,550
Number of extensions: 950872
Number of successful extensions: 5155
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5111
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013192
(1015 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081382.1| arginine vasopressin-induced protein 1 [Mus mus... 204 1e-52
>ref|NP_081382.1| arginine vasopressin-induced protein 1 [Mus musculus].
Length = 142
Score = 204 bits (518), Expect = 1e-52
Identities = 106/149 (71%), Positives = 115/149 (77%), Gaps = 1/149 (0%)
Frame = +3
Query: 393 MGTPASVVSEPPPWQAPT-EARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIW 569
MGTPASVVSEPP WQ T + RGRKQASANIFQDAEL+QIQGLFQRSGDQLAEERAQIIW
Sbjct: 1 MGTPASVVSEPPLWQVSTPQTRGRKQASANIFQDAELVQIQGLFQRSGDQLAEERAQIIW 60
Query: 570 ECAGDQRVAEAXXXXXXXXXXXXXXXDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQ 749
ECAGD RVAEA +HCSRLR+PEP + ++PQ+S T+TASSEQ
Sbjct: 61 ECAGDHRVAEALRRLRRKRPP-------KQNHCSRLRVPEPGSTASDPQASTTDTASSEQ 113
Query: 750 YLNSRRTSARIRRNWGKPGPTGYLHQIRH 836
NSRRTSAR RNW KPGPTGYLHQIRH
Sbjct: 114 SGNSRRTSARAPRNWNKPGPTGYLHQIRH 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,066,589
Number of extensions: 1181382
Number of successful extensions: 5560
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5495
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013192
(1015 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068378.2| arginine vasopressin-induced protein 1 [Homo sa... 233 2e-61
>ref|NP_068378.2| arginine vasopressin-induced protein 1 [Homo sapiens].
Length = 147
Score = 233 bits (594), Expect = 2e-61
Identities = 119/148 (80%), Positives = 122/148 (82%)
Frame = +3
Query: 393 MGTPASVVSEPPPWQAPTEARGRKQASANIFQDAELLQIQGLFQRSGDQLAEERAQIIWE 572
MGTPASVVSEPPPWQAP EARGRKQASANIFQDAELLQIQ LFQRSGDQLAEERAQIIWE
Sbjct: 1 MGTPASVVSEPPPWQAPIEARGRKQASANIFQDAELLQIQALFQRSGDQLAEERAQIIWE 60
Query: 573 CAGDQRVAEAXXXXXXXXXXXXXXXDHSLHHCSRLRIPEPHAPLANPQSSATETASSEQY 752
CAGD RVAEA HSLHHCSRLRI EPH+ LANPQ SATETASSEQY
Sbjct: 61 CAGDHRVAEALKRLRRKRPPRQKPLGHSLHHCSRLRILEPHSALANPQ-SATETASSEQY 119
Query: 753 LNSRRTSARIRRNWGKPGPTGYLHQIRH 836
L+SR+ SARIRRNW K GPT YLHQIRH
Sbjct: 120 LHSRKKSARIRRNWRKSGPTSYLHQIRH 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,548,423
Number of extensions: 1447410
Number of successful extensions: 7210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7078
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013192
(1015 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 755 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 755 bits (381), Expect = 0.0
Identities = 381/381 (100%)
Strand = Plus / Minus
Query: 2 gtgaccgaggtggcccgccttgggcggccaggtacgtaggtcggcagcctgcctcgcgct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118556063 gtgaccgaggtggcccgccttgggcggccaggtacgtaggtcggcagcctgcctcgcgct 118556004
Query: 62 gcggtggaagtgggtgggcgcgccgtcagagcaagggtgcaggagggacccgaaacccca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118556003 gcggtggaagtgggtgggcgcgccgtcagagcaagggtgcaggagggacccgaaacccca 118555944
Query: 122 ggtccacttagggcccgtcgttgtgcgaagctgccacgtctgagccccgggggccgaccc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118555943 ggtccacttagggcccgtcgttgtgcgaagctgccacgtctgagccccgggggccgaccc 118555884
Query: 182 gcgcagggaatgtcgccatgtgacctcggccaggacaccccctcccaagctctcatcctg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118555883 gcgcagggaatgtcgccatgtgacctcggccaggacaccccctcccaagctctcatcctg 118555824
Query: 242 ttcatgaacgccgcctggtccttgtgagcaccgtcgcggcaggaagcccagagctgcgcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118555823 ttcatgaacgccgcctggtccttgtgagcaccgtcgcggcaggaagcccagagctgcgcc 118555764
Query: 302 caccccttcgaaggggaaggggttagagtgggcgcattttaacttgcgatttgaggtctg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118555763 caccccttcgaaggggaaggggttagagtgggcgcattttaacttgcgatttgaggtctg 118555704
Query: 362 tcgttgctgcccttcagcgtg 382
|||||||||||||||||||||
Sbjct: 118555703 tcgttgctgcccttcagcgtg 118555683
Score = 617 bits (311), Expect = e-174
Identities = 332/339 (97%)
Strand = Plus / Minus
Query: 677 cagaatcccagagccccacgctccactggccaaccctcagagcagtgccacggagacggc 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118549077 cagaatcccagagccccacgctccactggccaaccctcagagcagtgccacggagacggc 118549018
Query: 737 ttccagcgagcagtatctgaactctcggaggaccagtgccaggatccgccggaactgggg 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118549017 ttccagcgagcagtatctgaactctcggaggaccagtgccaggatccgccggaactgggg 118548958
Query: 797 gaaaccgggtcccacaggctacctccatcagatcagacactgagccggggaaggggctgg 856
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118548957 gaagccgggtcccacaggctacctccatcagatcagacactgagccggggaaggggctgg 118548898
Query: 857 agacagctctatcttccccaggattcacagggacttttgccaaagggcctgaagaggtga 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118548897 agacagctctatcttccccaggattcacagggacttttgccaaagggcctgaagaggtga 118548838
Query: 917 aaaattcttggaagaaagttgaggcaaacagccccactcaagtaaatgcaaccctgtggc 976
| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 118548837 agaattcttggaagagagttgaggcagacagccccactcaagtaaatgcaaccctgtggc 118548778
Query: 977 cactggtctgcttgaatcaaaacaggacgggaggcttcc 1015
||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 118548777 cactggtctgcttgagtcagaacaggactggaggcttcc 118548739
Score = 591 bits (298), Expect = e-166
Identities = 298/298 (100%)
Strand = Plus / Minus
Query: 382 gagcacccaggatgggcacccccgcctctgtggtgagtgagccgcccccctggcaggccc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118550186 gagcacccaggatgggcacccccgcctctgtggtgagtgagccgcccccctggcaggccc 118550127
Query: 442 cgacagaggcccggggccgcaagcaggcctcagccaacatcttccaggatgccgaactgc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118550126 cgacagaggcccggggccgcaagcaggcctcagccaacatcttccaggatgccgaactgc 118550067
Query: 502 tgcagatccagggcctgtttcagcgcagcggggatcagctggcagaggaacgggcgcaga 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118550066 tgcagatccagggcctgtttcagcgcagcggggatcagctggcagaggaacgggcgcaga 118550007
Query: 562 tcatctgggagtgcgcaggggaccagcgcgtggcggaggccttgaagaggctgcgcagga 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118550006 tcatctgggagtgcgcaggggaccagcgcgtggcggaggccttgaagaggctgcgcagga 118549947
Query: 622 agaggcctcctcggcagaagcccttggaccactcgctgcaccactgcagccggctcag 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118549946 agaggcctcctcggcagaagcccttggaccactcgctgcaccactgcagccggctcag 118549889
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,163,671
Number of extensions: 131
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 3
Length of query: 1015
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 994
Effective length of database: 2,808,413,156
Effective search space: 2791562677064
Effective search space used: 2791562677064
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)