Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013197
(1050 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853364.1| PREDICTED: similar to epithelial protein lost i... 246 2e-65
Alignment gi|XP_534804.2| PREDICTED: similar to Epithelial protein lost i... 142 5e-34
Alignment gi|XP_543888.2| PREDICTED: similar to Protein MICAL-3 [Canis fa... 67 3e-11
Alignment gi|XP_864204.1| PREDICTED: similar to flavoprotein oxidoreducta... 66 5e-11
Alignment gi|XP_864300.1| PREDICTED: similar to flavoprotein oxidoreducta... 65 8e-11
Alignment gi|XP_864279.1| PREDICTED: similar to Protein MICAL-2 isoform 6... 65 8e-11
Alignment gi|XP_864255.1| PREDICTED: similar to flavoprotein oxidoreducta... 65 8e-11
Alignment gi|XP_864232.1| PREDICTED: similar to Protein MICAL-2 isoform 4... 65 8e-11
Alignment gi|XP_864179.1| PREDICTED: similar to Protein MICAL-2 isoform 2... 65 8e-11
Alignment gi|XP_534061.2| PREDICTED: similar to Protein MICAL-2 isoform 1... 65 8e-11
>ref|XP_853364.1| PREDICTED: similar to epithelial protein lost in neoplasm [Canis
familiaris].
Length = 128
Score = 246 bits (629), Expect = 2e-65
Identities = 113/117 (96%), Positives = 114/117 (97%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
TPSHE KGGGGSSTVQRSKSFSLRAQVKE+C ACQKTVYPMERLVADKLIFHNSCFCCKH
Sbjct: 11 TPSHEAKGGGGSSTVQRSKSFSLRAQVKESCAACQKTVYPMERLVADKLIFHNSCFCCKH 70
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKT 536
CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVD GTKT
Sbjct: 71 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKT 127
>ref|XP_534804.2| PREDICTED: similar to Epithelial protein lost in neoplasm [Canis
familiaris].
Length = 761
Score = 142 bits (358), Expect = 5e-34
Identities = 60/92 (65%), Positives = 73/92 (79%)
Frame = +3
Query: 255 RAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF 434
+A +ETC CQKTVYPMERL A++ +FH SCF C +C+ KLSLG+YA+LHG YCKPHF
Sbjct: 383 QAPARETCVECQKTVYPMERLFANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHF 442
Query: 435 QQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
QLFK+KGNYDEGFG + HK+LWA K + GT
Sbjct: 443 NQLFKAKGNYDEGFGHRPHKDLWASKNENEGT 474
>ref|XP_543888.2| PREDICTED: similar to Protein MICAL-3 [Canis familiaris].
Length = 1020
Score = 67.0 bits (162), Expect = 3e-11
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F +TC C+K VY MERL A+ FH SCF C++C T L L +YA G+
Sbjct: 780 KEFPQNLGGSDTCYFCRKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGK 839
Query: 414 FYCKPHF 434
FYCKPH+
Sbjct: 840 FYCKPHY 846
>ref|XP_864204.1| PREDICTED: similar to flavoprotein oxidoreductase MICAL2 isoform 3
[Canis familiaris].
Length = 939
Score = 66.2 bits (160), Expect = 5e-11
Identities = 43/115 (37%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Frame = +3
Query: 192 SHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCH 371
SH+ K F L +TC C+K VY MERL A+ FH CF C C
Sbjct: 704 SHQVHPPSARHPESMRKVFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSACA 763
Query: 372 TKLSLGSYA--ALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
T L L +YA G+F+CKPHF K N + RK+ EL +E + GT
Sbjct: 764 TTLRLAAYAFDGDEGKFFCKPHF---IHCKTNSQQ---RKRRAELKQQRE-EEGT 811
>ref|XP_864300.1| PREDICTED: similar to flavoprotein oxidoreductase MICAL2 isoform 7
[Canis familiaris].
Length = 962
Score = 65.5 bits (158), Expect = 8e-11
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F L +TC C+K VY MERL A+ FH CF C C T L L +YA G+
Sbjct: 743 KVFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSACATTLRLAAYAFDGDEGK 802
Query: 414 FYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
F+CKPHF K N + RK+ EL +E + GT
Sbjct: 803 FFCKPHF---IHCKTNSQQ---RKRRAELKQQRE-EEGT 834
>ref|XP_864279.1| PREDICTED: similar to Protein MICAL-2 isoform 6 [Canis familiaris].
Length = 1188
Score = 65.5 bits (158), Expect = 8e-11
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F L +TC C+K VY MERL A+ FH CF C C T L L +YA G+
Sbjct: 969 KVFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSACATTLRLAAYAFDGDEGK 1028
Query: 414 FYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
F+CKPHF K N + RK+ EL +E + GT
Sbjct: 1029 FFCKPHF---IHCKTNSQQ---RKRRAELKQQRE-EEGT 1060
>ref|XP_864255.1| PREDICTED: similar to flavoprotein oxidoreductase MICAL2 isoform 5
[Canis familiaris].
Length = 983
Score = 65.5 bits (158), Expect = 8e-11
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F L +TC C+K VY MERL A+ FH CF C C T L L +YA G+
Sbjct: 764 KVFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSACATTLRLAAYAFDGDEGK 823
Query: 414 FYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
F+CKPHF K N + RK+ EL +E + GT
Sbjct: 824 FFCKPHF---IHCKTNSQQ---RKRRAELKQQRE-EEGT 855
>ref|XP_864232.1| PREDICTED: similar to Protein MICAL-2 isoform 4 [Canis familiaris].
Length = 1103
Score = 65.5 bits (158), Expect = 8e-11
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F L +TC C+K VY MERL A+ FH CF C C T L L +YA G+
Sbjct: 969 KVFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSACATTLRLAAYAFDGDEGK 1028
Query: 414 FYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
F+CKPHF K N + RK+ EL +E + GT
Sbjct: 1029 FFCKPHF---IHCKTNSQQ---RKRRAELKQQRE-EEGT 1060
>ref|XP_864179.1| PREDICTED: similar to Protein MICAL-2 isoform 2 [Canis familiaris].
Length = 1209
Score = 65.5 bits (158), Expect = 8e-11
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F L +TC C+K VY MERL A+ FH CF C C T L L +YA G+
Sbjct: 990 KVFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSACATTLRLAAYAFDGDEGK 1049
Query: 414 FYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
F+CKPHF K N + RK+ EL +E + GT
Sbjct: 1050 FFCKPHF---IHCKTNSQQ---RKRRAELKQQRE-EEGT 1081
>ref|XP_534061.2| PREDICTED: similar to Protein MICAL-2 isoform 1 [Canis familiaris].
Length = 1124
Score = 65.5 bits (158), Expect = 8e-11
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F L +TC C+K VY MERL A+ FH CF C C T L L +YA G+
Sbjct: 990 KVFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSACATTLRLAAYAFDGDEGK 1049
Query: 414 FYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
F+CKPHF K N + RK+ EL +E + GT
Sbjct: 1050 FFCKPHF---IHCKTNSQQ---RKRRAELKQQRE-EEGT 1081
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,666,215
Number of extensions: 1554966
Number of successful extensions: 9939
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 9793
Number of HSP's successfully gapped: 22
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013197
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013197
(1050 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035602.2| LIM domain-containing protein 2 [Bos taurus]. 245 4e-65
Alignment gi|NP_001179683.1| LIM domain and actin-binding protein 1 [Bos ... 139 5e-33
Alignment gi|XP_002687320.1| PREDICTED: LIM domain and actin binding 1 [B... 139 5e-33
Alignment gi|XP_002687965.1| PREDICTED: microtubule associated monoxygena... 72 1e-12
Alignment gi|XP_002704520.1| PREDICTED: microtubule associated monoxygena... 72 1e-12
Alignment gi|XP_002693097.1| PREDICTED: microtubule associated monoxygena... 68 2e-11
Alignment gi|XP_613663.3| PREDICTED: microtubule associated monoxygenase,... 68 2e-11
Alignment gi|NP_001077240.1| cysteine and glycine-rich protein 1 [Bos tau... 56 5e-08
Alignment gi|NP_001019860.1| cysteine and glycine-rich protein 3 [Bos tau... 52 9e-07
Alignment gi|NP_001075051.1| NEDD9-interacting protein with calponin homo... 50 3e-06
>ref|NP_001035602.2| LIM domain-containing protein 2 [Bos taurus].
Length = 128
Score = 245 bits (626), Expect = 4e-65
Identities = 113/118 (95%), Positives = 114/118 (96%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
TPSHE KGGG SSTVQRSKSFSLRAQVKETC ACQKTVYPMERLVADKLIFH+SCFCCKH
Sbjct: 11 TPSHEAKGGGSSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKH 70
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 539
CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVD GTKTA
Sbjct: 71 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 128
>ref|NP_001179683.1| LIM domain and actin-binding protein 1 [Bos taurus].
Length = 762
Score = 139 bits (349), Expect = 5e-33
Identities = 63/104 (60%), Positives = 78/104 (75%)
Frame = +3
Query: 219 SSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA 398
SS + K F +A +ETC CQKTVY MERL+A++ +FH SCF C +C++KLSLG+YA
Sbjct: 375 SSPPKAVKKF--QAPARETCVECQKTVYSMERLLANQQVFHISCFRCSYCNSKLSLGTYA 432
Query: 399 ALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K + T
Sbjct: 433 SLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASKNENEET 476
>ref|XP_002687320.1| PREDICTED: LIM domain and actin binding 1 [Bos taurus].
Length = 762
Score = 139 bits (349), Expect = 5e-33
Identities = 63/104 (60%), Positives = 78/104 (75%)
Frame = +3
Query: 219 SSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA 398
SS + K F +A +ETC CQKTVY MERL+A++ +FH SCF C +C++KLSLG+YA
Sbjct: 375 SSPPKAVKKF--QAPARETCVECQKTVYSMERLLANQQVFHISCFRCSYCNSKLSLGTYA 432
Query: 399 ALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K + T
Sbjct: 433 SLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASKNENEET 476
>ref|XP_002687965.1| PREDICTED: microtubule associated monoxygenase, calponin and LIM
domain containing 3 [Bos taurus].
Length = 1781
Score = 71.6 bits (174), Expect = 1e-12
Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA-ALH-GE 413
K F +TC CQK VY MERL A+ FH SCF C+HC T L L +YA AL G+
Sbjct: 759 KEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEHCATTLRLSAYAYALEDGK 818
Query: 414 FYCKPHF 434
FYCKPH+
Sbjct: 819 FYCKPHY 825
>ref|XP_002704520.1| PREDICTED: microtubule associated monoxygenase, calponin and LIM
domain containing 3 [Bos taurus].
Length = 1960
Score = 71.6 bits (174), Expect = 1e-12
Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA-ALH-GE 413
K F +TC CQK VY MERL A+ FH SCF C+HC T L L +YA AL G+
Sbjct: 752 KEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEHCATTLRLSAYAYALEDGK 811
Query: 414 FYCKPHF 434
FYCKPH+
Sbjct: 812 FYCKPHY 818
>ref|XP_002693097.1| PREDICTED: microtubule associated monoxygenase, calponin and LIM
domain containing 2 [Bos taurus].
Length = 1122
Score = 67.8 bits (164), Expect = 2e-11
Identities = 40/94 (42%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K+F L +TC C+K VY MERL A+ FH CF C C T L L +YA G+
Sbjct: 988 KTFPLNVGGSDTCYFCKKRVYVMERLSAEGRFFHRECFRCSVCATTLHLATYAFDVDEGK 1047
Query: 414 FYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKE 515
F+CKPHF K N + RK+ EL KE
Sbjct: 1048 FFCKPHF---IHCKTNSQQ---RKRRAELKQQKE 1075
>ref|XP_613663.3| PREDICTED: microtubule associated monoxygenase, calponin and LIM
domain containing 2 [Bos taurus].
Length = 1122
Score = 67.8 bits (164), Expect = 2e-11
Identities = 40/94 (42%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K+F L +TC C+K VY MERL A+ FH CF C C T L L +YA G+
Sbjct: 988 KTFPLNVGGSDTCYFCKKRVYVMERLSAEGRFFHRECFRCSVCATTLHLATYAFDVDEGK 1047
Query: 414 FYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKE 515
F+CKPHF K N + RK+ EL KE
Sbjct: 1048 FFCKPHF---IHCKTNSQQ---RKRRAELKQQKE 1075
>ref|NP_001077240.1| cysteine and glycine-rich protein 1 [Bos taurus].
Length = 193
Score = 56.2 bits (134), Expect = 5e-08
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +3
Query: 195 HETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHT 374
HE G +T + F+ + E C C + VY E+++ +H SCF C C
Sbjct: 92 HEEAPGHRPTTNPNTSKFAQKVGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGK 151
Query: 375 KLSLGSYAALHGEFYCKPHFQQLFKSKG-NYDEGFGRKQHKE 497
L + A GE YCK + + F KG + +G G H E
Sbjct: 152 GLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALVHSE 193
Score = 49.7 bits (117), Expect = 4e-06
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 276 CTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHG-EFYCKPHFQQLFKS 452
C CQKTVY E + + FH SCF C C L + A+HG E YCK + + +
Sbjct: 10 CGVCQKTVYFAEEVQCEGSSFHKSCFLCLVCKKNLD-STTVAVHGEEIYCKSCYGKKYGP 68
Query: 453 KG-NYDEGFG 479
KG Y +G G
Sbjct: 69 KGYGYGQGAG 78
>ref|NP_001019860.1| cysteine and glycine-rich protein 3 [Bos taurus].
Length = 194
Score = 52.0 bits (123), Expect = 9e-07
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 276 CTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSK 455
C AC+KTVY E + + FH +CF C C L + AA E YCK + + + K
Sbjct: 10 CGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPK 69
Query: 456 G-NYDEGFG 479
G Y +G G
Sbjct: 70 GIGYGQGAG 78
>ref|NP_001075051.1| NEDD9-interacting protein with calponin homology and LIM domains
[Bos taurus].
Length = 1070
Score = 50.4 bits (119), Expect = 3e-06
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 258 AQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGE--FYCKPH 431
A ++ C C + +Y +ERL AD FH SCF C C L G Y G+ YC H
Sbjct: 691 ASAEDLCALCGQHLYILERLCADGRFFHRSCFRCHICEATLWPGGYRQHPGDGYLYCLQH 750
Query: 432 FQQLFKSKGNYDEG 473
Q + + D G
Sbjct: 751 LPQTGHEEDSSDRG 764
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,650,577
Number of extensions: 1508845
Number of successful extensions: 9905
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 9768
Number of HSP's successfully gapped: 16
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013197
(1050 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131338.1| PREDICTED: LIM domain-containing protein 2-l... 255 3e-68
Alignment gi|NP_001108148.1| EPLIN-b [Sus scrofa]. 140 9e-34
Alignment gi|XP_003355661.1| PREDICTED: LOW QUALITY PROTEIN: protein MICA... 69 6e-12
Alignment gi|XP_003124307.2| PREDICTED: MICAL-like protein 2-like [Sus sc... 57 1e-08
Alignment gi|XP_003357724.1| PREDICTED: cysteine and glycine-rich protein... 56 4e-08
Alignment gi|NP_001165839.1| cysteine and glycine-rich protein 3 [Sus scr... 51 9e-07
Alignment gi|XP_003357726.1| PREDICTED: cysteine and glycine-rich protein... 50 2e-06
Alignment gi|XP_003357725.1| PREDICTED: cysteine and glycine-rich protein... 50 2e-06
Alignment gi|XP_003357811.1| PREDICTED: nebulette isoform 2 [Sus scrofa]. 49 4e-06
>ref|XP_003131338.1| PREDICTED: LIM domain-containing protein 2-like [Sus scrofa].
Length = 128
Score = 255 bits (652), Expect = 3e-68
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH
Sbjct: 11 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 70
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 539
CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA
Sbjct: 71 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128
>ref|NP_001108148.1| EPLIN-b [Sus scrofa].
Length = 756
Score = 140 bits (354), Expect = 9e-34
Identities = 63/98 (64%), Positives = 76/98 (77%)
Frame = +3
Query: 219 SSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA 398
SS + K F +A +ETC CQKTVYPMERL+A++ +FH SCF C +C+ KLSLG+YA
Sbjct: 369 SSPPKAVKKF--QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA 426
Query: 399 ALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHK 512
+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K
Sbjct: 427 SLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASK 464
>ref|XP_003355661.1| PREDICTED: LOW QUALITY PROTEIN: protein MICAL-3 [Sus scrofa].
Length = 1951
Score = 68.6 bits (166), Expect = 6e-12
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F +TC CQK VY MERL A+ FH SCF C++C T L L +YA G+
Sbjct: 754 KEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDLEDGK 813
Query: 414 FYCKPHF 434
FYCKPH+
Sbjct: 814 FYCKPHY 820
>ref|XP_003124307.2| PREDICTED: MICAL-like protein 2-like [Sus scrofa].
Length = 653
Score = 57.4 bits (137), Expect = 1e-08
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Frame = +3
Query: 189 PSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHC 368
P+ K GG +++ S + V TC C + V+ ++R +AD ++H SCF CK C
Sbjct: 158 PTVPRKEGGTEGPPRKAGPASAPSSVSGTCGICGQHVHLVQRHLADGRLYHRSCFRCKQC 217
Query: 369 HTKLSLGSYAAL--HGEFYCKPHFQQLFKSK--GNYDE---GFGRKQHKELWAHKEVDSG 527
+ L G+Y A G F C H + + G D G RK + AH + D+G
Sbjct: 218 SSTLHSGAYRATGEPGVFVCSSHHPETASASPHGPTDSKLPGAPRKAQEAQEAHGQRDAG 277
Query: 528 TK 533
K
Sbjct: 278 PK 279
>ref|XP_003357724.1| PREDICTED: cysteine and glycine-rich protein 1-like isoform 1 [Sus
scrofa].
Length = 193
Score = 55.8 bits (133), Expect = 4e-08
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +3
Query: 195 HETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHT 374
HE G +T + F+ + E C C + VY E+++ +H SCF C C
Sbjct: 92 HEETPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGK 151
Query: 375 KLSLGSYAALHGEFYCKPHFQQLFKSKG-NYDEGFGRKQHKE 497
L + A GE YCK + + F KG + +G G H E
Sbjct: 152 GLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALVHSE 193
Score = 50.1 bits (118), Expect = 2e-06
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 276 CTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHG-EFYCKPHFQQLFKS 452
C CQKTVY E + + FH SCF C C L + A+HG E YCK + + +
Sbjct: 10 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLD-STTVAVHGEEIYCKSCYGKKYGP 68
Query: 453 KG-NYDEGFG 479
KG Y +G G
Sbjct: 69 KGYGYGQGAG 78
>ref|NP_001165839.1| cysteine and glycine-rich protein 3 [Sus scrofa].
Length = 194
Score = 51.2 bits (121), Expect = 9e-07
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 276 CTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSK 455
C AC KTVY E + + FH +CF C C L + AA E YCK + + + K
Sbjct: 10 CGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPK 69
Query: 456 G-NYDEGFG 479
G Y +G G
Sbjct: 70 GIGYGQGAG 78
Score = 48.1 bits (113), Expect = 8e-06
Identities = 27/92 (29%), Positives = 40/92 (43%)
Frame = +3
Query: 219 SSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA 398
S+T F+ + E C C K+VY E+++ +H +CF C C L +
Sbjct: 101 SATTSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVT 160
Query: 399 ALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHK 494
GE YCK + + F G GFG H+
Sbjct: 161 DKDGELYCKVCYAKNFGPTG---IGFGGLTHQ 189
>ref|XP_003357726.1| PREDICTED: cysteine and glycine-rich protein 1-like isoform 3 [Sus
scrofa].
Length = 187
Score = 50.1 bits (118), Expect = 2e-06
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 276 CTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHG-EFYCKPHFQQLFKS 452
C CQKTVY E + + FH SCF C C L + A+HG E YCK + + +
Sbjct: 10 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLD-STTVAVHGEEIYCKSCYGKKYGP 68
Query: 453 KG-NYDEGFG 479
KG Y +G G
Sbjct: 69 KGYGYGQGAG 78
Score = 50.1 bits (118), Expect = 2e-06
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +3
Query: 195 HETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHT 374
HE G +T + F+ + E C C + VY E+ +H SCF C C
Sbjct: 92 HEETPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKS------WHKSCFRCAKCGK 145
Query: 375 KLSLGSYAALHGEFYCKPHFQQLFKSKG-NYDEGFGRKQHKE 497
L + A GE YCK + + F KG + +G G H E
Sbjct: 146 GLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALVHSE 187
>ref|XP_003357725.1| PREDICTED: cysteine and glycine-rich protein 1-like isoform 2 [Sus
scrofa].
Length = 220
Score = 50.1 bits (118), Expect = 2e-06
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 276 CTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHG-EFYCKPHFQQLFKS 452
C CQKTVY E + + FH SCF C C L + A+HG E YCK + + +
Sbjct: 10 CGVCQKTVYFAEEVQCEGSSFHKSCFLCMVCKKNLD-STTVAVHGEEIYCKSCYGKKYGP 68
Query: 453 KG-NYDEGFG 479
KG Y +G G
Sbjct: 69 KGYGYGQGAG 78
>ref|XP_003357811.1| PREDICTED: nebulette isoform 2 [Sus scrofa].
Length = 270
Score = 49.3 bits (116), Expect = 4e-06
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 276 CTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF-QQLFKS 452
C C K VYP E++ +H CF C+ C L++ +Y + YC H+ +Q F +
Sbjct: 5 CARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQSFTT 64
Query: 453 KGNYDEGFGRKQHKEL 500
+ E KQ EL
Sbjct: 65 VADTPENLRLKQQSEL 80
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,018,280
Number of extensions: 985911
Number of successful extensions: 6285
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6191
Number of HSP's successfully gapped: 12
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013197
(1050 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_765985.1| LIM domain-containing protein 2 [Mus musculus]. 245 5e-65
Alignment gi|XP_911481.1| PREDICTED: LIM domain-containing protein 2-like... 241 7e-64
Alignment gi|NP_075550.2| LIM domain and actin-binding protein 1 isoform ... 146 2e-35
Alignment gi|NP_001107017.1| LIM domain and actin-binding protein 1 isofo... 146 2e-35
Alignment gi|NP_001019789.1| xin actin-binding repeat-containing protein ... 138 8e-33
Alignment gi|NP_001180234.1| protein MICAL-2 isoform A [Mus musculus]. 64 2e-10
Alignment gi|NP_796256.1| protein MICAL-2 isoform B [Mus musculus]. 64 2e-10
Alignment gi|NP_031817.1| cysteine and glycine-rich protein 1 [Mus muscul... 56 5e-08
Alignment gi|NP_700445.2| protein MICAL-3 [Mus musculus]. 55 7e-08
Alignment gi|NP_001157905.1| NEDD9-interacting protein with calponin homo... 54 2e-07
>ref|NP_765985.1| LIM domain-containing protein 2 [Mus musculus].
Length = 128
Score = 245 bits (625), Expect = 5e-65
Identities = 112/118 (94%), Positives = 114/118 (96%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
TPSHE KG GSSTVQRSKSFSLRAQVKETC ACQKTVYPMERLVADKLIFHNSCFCCKH
Sbjct: 11 TPSHEAKGSSGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKH 70
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 539
CHTKLSLGSYAA+HGEFYC+PHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA
Sbjct: 71 CHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128
>ref|XP_911481.1| PREDICTED: LIM domain-containing protein 2-like [Mus musculus].
Length = 128
Score = 241 bits (615), Expect = 7e-64
Identities = 110/118 (93%), Positives = 112/118 (94%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
TPSHE KG GSSTVQRSKSFSLR QVKETC ACQKTVYPMERLVADKLIFHNSCFCCKH
Sbjct: 11 TPSHEAKGSSGSSTVQRSKSFSLRVQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKH 70
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 539
CHTKLSLGSYAA+HGEFYC+PHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTK A
Sbjct: 71 CHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKMA 128
>ref|NP_075550.2| LIM domain and actin-binding protein 1 isoform b [Mus musculus].
Length = 593
Score = 146 bits (369), Expect = 2e-35
Identities = 68/115 (59%), Positives = 83/115 (72%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
+P T SS + +K F +A KE+C CQKTVYPMERL+A++ +FH SCF C +
Sbjct: 200 SPDARTSSLPESSPSKTAKKF--QAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSY 257
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
C+ KLSLG+YA+LHG YCKPHF QLFKSKGNYDEGFG KQHK+LWA K + T
Sbjct: 258 CNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHKQHKDLWASKSDNEET 312
>ref|NP_001107017.1| LIM domain and actin-binding protein 1 isoform a [Mus musculus].
Length = 753
Score = 146 bits (369), Expect = 2e-35
Identities = 68/115 (59%), Positives = 83/115 (72%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
+P T SS + +K F +A KE+C CQKTVYPMERL+A++ +FH SCF C +
Sbjct: 360 SPDARTSSLPESSPSKTAKKF--QAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSY 417
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGT 530
C+ KLSLG+YA+LHG YCKPHF QLFKSKGNYDEGFG KQHK+LWA K + T
Sbjct: 418 CNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHKQHKDLWASKSDNEET 472
>ref|NP_001019789.1| xin actin-binding repeat-containing protein 2 isoform 1 [Mus
musculus].
Length = 3784
Score = 138 bits (347), Expect = 8e-33
Identities = 61/86 (70%), Positives = 67/86 (77%)
Frame = +3
Query: 267 KETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLF 446
KE C CQKTVYPME L+ADK FH SCF C HC +KLSLG+YA+LHG YCKPHF+QLF
Sbjct: 3254 KEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLF 3313
Query: 447 KSKGNYDEGFGRKQHKELWAHKEVDS 524
KSKGNYDEGFG KQHK+ W K S
Sbjct: 3314 KSKGNYDEGFGHKQHKDRWNCKNQSS 3339
>ref|NP_001180234.1| protein MICAL-2 isoform A [Mus musculus].
Length = 1102
Score = 64.3 bits (155), Expect = 2e-10
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K+F L ++TC C+K VY +ERL A+ FH CF C C L L +YA G+
Sbjct: 968 KAFPLSLGGRDTCYFCKKRVYMIERLSAEGHFFHQECFRCSVCSATLRLAAYAFDCDEGK 1027
Query: 414 FYCKPHF 434
FYCKPHF
Sbjct: 1028 FYCKPHF 1034
>ref|NP_796256.1| protein MICAL-2 isoform B [Mus musculus].
Length = 960
Score = 64.3 bits (155), Expect = 2e-10
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K+F L ++TC C+K VY +ERL A+ FH CF C C L L +YA G+
Sbjct: 741 KAFPLSLGGRDTCYFCKKRVYMIERLSAEGHFFHQECFRCSVCSATLRLAAYAFDCDEGK 800
Query: 414 FYCKPHF 434
FYCKPHF
Sbjct: 801 FYCKPHF 807
>ref|NP_031817.1| cysteine and glycine-rich protein 1 [Mus musculus].
Length = 193
Score = 55.8 bits (133), Expect = 5e-08
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +3
Query: 195 HETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHT 374
HE G +T + F+ + E C C + VY E+++ +H SCF C C
Sbjct: 92 HEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKSCFRCAKCGK 151
Query: 375 KLSLGSYAALHGEFYCKPHFQQLFKSKG-NYDEGFGRKQHKE 497
L + A GE YCK + + F KG + +G G H E
Sbjct: 152 GLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALVHSE 193
Score = 49.7 bits (117), Expect = 4e-06
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 276 CTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHG-EFYCKPHFQQLFKS 452
C CQKTVY E + + FH SCF C C L + A+HG E YCK + + +
Sbjct: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLD-STTVAVHGEEIYCKSCYGKKYGP 68
Query: 453 KG-NYDEGFG 479
KG Y +G G
Sbjct: 69 KGYGYGQGAG 78
>ref|NP_700445.2| protein MICAL-3 [Mus musculus].
Length = 864
Score = 55.5 bits (132), Expect = 7e-08
Identities = 26/53 (49%), Positives = 31/53 (58%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA 398
K F +TC CQK VY MERL A+ FH SCF C++C T L L +YA
Sbjct: 752 KEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYA 804
>ref|NP_001157905.1| NEDD9-interacting protein with calponin homology and LIM domains
isoform 2 [Mus musculus].
Length = 975
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 258 AQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGE--FYCKPH 431
A +E C C K +Y +ER D FH SCFCC C L G Y G+ FYC H
Sbjct: 604 AGAEELCELCGKHLYILERFCVDGHFFHRSCFCCHTCEATLWPGGYGQHPGDGHFYCLQH 663
Query: 432 FQQ 440
Q
Sbjct: 664 LPQ 666
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,919,077
Number of extensions: 1220562
Number of successful extensions: 7595
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 7339
Number of HSP's successfully gapped: 17
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013197
(1050 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_085053.1| LIM domain-containing protein 2 [Homo sapiens]. 241 6e-64
Alignment gi|NP_001107019.1| LIM domain and actin-binding protein 1 isofo... 141 9e-34
Alignment gi|NP_001107018.1| LIM domain and actin-binding protein 1 isofo... 141 9e-34
Alignment gi|NP_057441.1| LIM domain and actin-binding protein 1 isoform ... 141 9e-34
Alignment gi|NP_001230704.1| LIM domain and actin-binding protein 1 isofo... 141 9e-34
Alignment gi|NP_001186074.1| xin actin-binding repeat-containing protein ... 140 2e-33
Alignment gi|NP_001186072.1| xin actin-binding repeat-containing protein ... 140 2e-33
Alignment gi|NP_001073278.1| xin actin-binding repeat-containing protein ... 140 2e-33
Alignment gi|NP_001116203.1| protein MICAL-3 isoform 3 [Homo sapiens]. 69 9e-12
Alignment gi|NP_001129476.1| protein MICAL-3 isoform 2 [Homo sapiens]. 69 9e-12
>ref|NP_085053.1| LIM domain-containing protein 2 [Homo sapiens].
Length = 127
Score = 241 bits (616), Expect = 6e-64
Identities = 113/118 (95%), Positives = 114/118 (96%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
TPSH+ KGGG SSTVQRSKSFSLRAQVKETC ACQKTVYPMERLVADKLIFHNSCFCCKH
Sbjct: 11 TPSHDAKGGG-SSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKH 69
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 539
CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVD GTKTA
Sbjct: 70 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 127
>ref|NP_001107019.1| LIM domain and actin-binding protein 1 isoform 3 [Homo sapiens].
Length = 600
Score = 141 bits (356), Expect = 9e-34
Identities = 64/109 (58%), Positives = 78/109 (71%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
+P SS + K F +A +ETC CQKTVYPMERL+A++ +FH SCF C +
Sbjct: 203 SPDSRASSLSESSPPKAMKKF--QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSY 260
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHK 512
C+ KLSLG+YA+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K
Sbjct: 261 CNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASK 309
>ref|NP_001107018.1| LIM domain and actin-binding protein 1 isoform 1 [Homo sapiens].
Length = 760
Score = 141 bits (356), Expect = 9e-34
Identities = 64/109 (58%), Positives = 78/109 (71%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
+P SS + K F +A +ETC CQKTVYPMERL+A++ +FH SCF C +
Sbjct: 363 SPDSRASSLSESSPPKAMKKF--QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSY 420
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHK 512
C+ KLSLG+YA+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K
Sbjct: 421 CNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASK 469
>ref|NP_057441.1| LIM domain and actin-binding protein 1 isoform 2 [Homo sapiens].
Length = 759
Score = 141 bits (356), Expect = 9e-34
Identities = 64/109 (58%), Positives = 78/109 (71%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
+P SS + K F +A +ETC CQKTVYPMERL+A++ +FH SCF C +
Sbjct: 362 SPDSRASSLSESSPPKAMKKF--QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSY 419
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHK 512
C+ KLSLG+YA+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K
Sbjct: 420 CNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASK 468
>ref|NP_001230704.1| LIM domain and actin-binding protein 1 isoform 4 [Homo sapiens].
Length = 457
Score = 141 bits (356), Expect = 9e-34
Identities = 64/109 (58%), Positives = 78/109 (71%)
Frame = +3
Query: 186 TPSHETKGGGGSSTVQRSKSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKH 365
+P SS + K F +A +ETC CQKTVYPMERL+A++ +FH SCF C +
Sbjct: 60 SPDSRASSLSESSPPKAMKKF--QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSY 117
Query: 366 CHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHK 512
C+ KLSLG+YA+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K
Sbjct: 118 CNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASK 166
>ref|NP_001186074.1| xin actin-binding repeat-containing protein 2 isoform 5 [Homo
sapiens].
Length = 716
Score = 140 bits (353), Expect = 2e-33
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +3
Query: 252 LRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPH 431
L Q KE C CQKTVYPME LVADK FH SCF C HC++KLSLG+YA+LHG+ YCKPH
Sbjct: 172 LLLQDKEICILCQKTVYPMECLVADKQNFHKSCFRCHHCNSKLSLGNYASLHGQIYCKPH 231
Query: 432 FQQLFKSKGNYDEGFGRKQHKELW 503
F+QLFKSKGNYDEGFG KQHK+ W
Sbjct: 232 FKQLFKSKGNYDEGFGHKQHKDRW 255
>ref|NP_001186072.1| xin actin-binding repeat-containing protein 2 isoform 3 [Homo
sapiens].
Length = 971
Score = 140 bits (353), Expect = 2e-33
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +3
Query: 252 LRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPH 431
L Q KE C CQKTVYPME LVADK FH SCF C HC++KLSLG+YA+LHG+ YCKPH
Sbjct: 427 LLLQDKEICILCQKTVYPMECLVADKQNFHKSCFRCHHCNSKLSLGNYASLHGQIYCKPH 486
Query: 432 FQQLFKSKGNYDEGFGRKQHKELW 503
F+QLFKSKGNYDEGFG KQHK+ W
Sbjct: 487 FKQLFKSKGNYDEGFGHKQHKDRW 510
>ref|NP_001073278.1| xin actin-binding repeat-containing protein 2 isoform 2 [Homo
sapiens].
Length = 938
Score = 140 bits (353), Expect = 2e-33
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +3
Query: 252 LRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPH 431
L Q KE C CQKTVYPME LVADK FH SCF C HC++KLSLG+YA+LHG+ YCKPH
Sbjct: 394 LLLQDKEICILCQKTVYPMECLVADKQNFHKSCFRCHHCNSKLSLGNYASLHGQIYCKPH 453
Query: 432 FQQLFKSKGNYDEGFGRKQHKELW 503
F+QLFKSKGNYDEGFG KQHK+ W
Sbjct: 454 FKQLFKSKGNYDEGFGHKQHKDRW 477
>ref|NP_001116203.1| protein MICAL-3 isoform 3 [Homo sapiens].
Length = 966
Score = 68.6 bits (166), Expect = 9e-12
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F +TC CQK VY MERL A+ FH SCF C++C T L L +YA G+
Sbjct: 752 KEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGK 811
Query: 414 FYCKPHF 434
FYCKPH+
Sbjct: 812 FYCKPHY 818
>ref|NP_001129476.1| protein MICAL-3 isoform 2 [Homo sapiens].
Length = 1073
Score = 68.6 bits (166), Expect = 9e-12
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 240 KSFSLRAQVKETCTACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 413
K F +TC CQK VY MERL A+ FH SCF C++C T L L +YA G+
Sbjct: 876 KEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGK 935
Query: 414 FYCKPHF 434
FYCKPH+
Sbjct: 936 FYCKPHY 942
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,425,254
Number of extensions: 1501083
Number of successful extensions: 9599
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 9376
Number of HSP's successfully gapped: 26
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013197
(1050 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1294 0.0
Sscrofa_Chr06 448 e-123
>Sscrofa_Chr12
|| Length = 63588571
Score = 1294 bits (653), Expect = 0.0
Identities = 656/657 (99%)
Strand = Plus / Plus
Query: 380 cagcctgggcagctatgcagcgctgcatggggaattttactgcaaaccccactttcagca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213488 cagcctgggcagctatgcagcgctgcatggggaattttactgcaaaccccactttcagca 15213547
Query: 440 gctgtttaagagcaaaggcaactacgatgaaggctttggccggaagcagcacaaggagct 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213548 gctgtttaagagcaaaggcaactacgatgaaggctttggccggaagcagcacaaggagct 15213607
Query: 500 ctgggcccacaaggaggtggactccggcaccaagacagcctgaggcccctctggcagtcc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213608 ctgggcccacaaggaggtggactccggcaccaagacagcctgaggcccctctggcagtcc 15213667
Query: 560 cctccctcctccctccatagagggcctggagcgggcagttggaagggtgggagattggac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213668 cctccctcctccctccatagagggcctggagcgggcagttggaagggtgggagattggac 15213727
Query: 620 cttgggcttggttggggcagggtgggaaggggatgaggccatcttgctcaggcagggtta 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213728 cttgggcttggttggggcagggtgggaaggggatgaggccatcttgctcaggcagggtta 15213787
Query: 680 tggggacagggctttgctccaggatttcttcttctccctcagtaggccggggtttgggaa 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213788 tggggacagggctttgctccaggatttcttcttctccctcagtaggccggggtttgggaa 15213847
Query: 740 ccaggattgggctttgctcagcaccctgcttcctgcttctttcagcctaccccacttcac 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213848 ccaggattgggctttgctcagcaccctgcttcctgcttctttcagcctaccccacttcac 15213907
Query: 800 cccgtggcccccttgggaggcccccagattcagcttccctatctaggtgccttttctcca 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213908 cccgtggcccccttgggaggcccccagattcagcttccctatctaggtgccttttctcca 15213967
Query: 860 gcaaggagtcagcatgccctcctcagggtcctgagctccctcactgccacctggggccct 919
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15213968 gcaaggagtcagcatgccctcctcagggtcctgagctccttcactgccacctggggccct 15214027
Query: 920 gggcagcccccacgtctccccatctacctctgcccttagcctggtcctgagccatggaga 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15214028 gggcagcccccacgtctccccatctacctctgcccttagcctggtcctgagccatggaga 15214087
Query: 980 atggaggaaggtgagccagggtgcgccctgctgggcctctccaggtgcccaccagga 1036
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15214088 atggaggaaggtgagccagggtgcgccctgctgggcctctccaggtgcccaccagga 15214144
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 241 agtccttcagcctccgggcccaggtgaaggagacctgcactgcctgccagaagactgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213274 agtccttcagcctccgggcccaggtgaaggagacctgcactgcctgccagaagactgtgt 15213333
Query: 301 accccatggagcggctggtggctgacaagctcattttccacaactcttgcttctgctgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213334 accccatggagcggctggtggctgacaagctcattttccacaactcttgcttctgctgca 15213393
Query: 361 agcactgtcacaccaagctcag 382
||||||||||||||||||||||
Sbjct: 15213394 agcactgtcacaccaagctcag 15213415
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 102 gaaccctgcgggtgccgcgtctccacccggcgcctccatcgcctccaacgagccatgttc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15212871 gaaccctgcgggtgccgcgtctccacccggcgcctccatcgcctccaacgagccatgttc 15212930
Query: 162 caggctgcaggagccgcccaggccaccccttctcatg 198
|||||||||||||||||||||||||||||||||||||
Sbjct: 15212931 caggctgcaggagccgcccaggccaccccttctcatg 15212967
Score = 91.7 bits (46), Expect = 7e-16
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 193 ctcatgaaaccaaaggcggcggaggaagcagtaccgtgcagcgctccaag 242
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15213147 ctcaggaaaccaaaggcggcggaggaagcagtaccgtgcagcgctccaag 15213196
>Sscrofa_Chr06
|| Length = 157765593
Score = 448 bits (226), Expect = e-123
Identities = 284/302 (94%), Gaps = 6/302 (1%)
Strand = Plus / Plus
Query: 709 tcttctccctcagtaggccggggtttgggaaccaggattgggctttgctcagcaccctgc 768
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 16036705 tcttctccctcagtaggccagggtttgggaaccaggattgggctttgctcagcaccctgc 16036764
Query: 769 ttcctgcttctttcagcctaccccacttcaccccgtggcccccttgggaggcccccagat 828
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 16036765 ttcctgcttctttcagcctaccccacttcaccct----ccccc--gggaggcccccagac 16036818
Query: 829 tcagcttccctatctaggtgccttttctccagcaaggagtcagcatgccctcctcagggt 888
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 16036819 tcagcttccctatctaggtgccttttctccagcaaggagtctgcacgccctcctcagggt 16036878
Query: 889 cctgagctccctcactgccacctggggccctgggcagcccccacgtctccccatctacct 948
|| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct: 16036879 ccccagctccctcactgccacctggggccctcggcagcccccacatctccccatctatct 16036938
Query: 949 ctgcccttagcctggtcctgagccatggagaatggaggaaggtgagccagggtgcgccct 1008
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 16036939 ctgcccttagcctggtcctgagccatggagaatggaggaaggtgagccagagtgccccct 16036998
Query: 1009 gc 1010
||
Sbjct: 16036999 gc 16037000
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,766,990
Number of extensions: 275
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 6
Length of query: 1050
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1029
Effective length of database: 2,808,413,156
Effective search space: 2889857137524
Effective search space used: 2889857137524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)