Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013199
(1453 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002965.1| glutamine synthetase [Canis lupus familiaris]. 787 0.0
Alignment gi|XP_852110.1| PREDICTED: similar to glutamate-ammonia ligase ... 580 e-170
Alignment gi|XP_855129.1| PREDICTED: similar to glutamate-ammonia ligase ... 591 e-169
Alignment gi|XP_853458.1| PREDICTED: similar to glutamate-ammonia ligase ... 349 4e-96
>ref|NP_001002965.1| glutamine synthetase [Canis lupus familiaris].
Length = 373
Score = 787 bits (2032), Expect = 0.0
Identities = 368/373 (98%), Positives = 371/373 (99%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPK +EELPEW
Sbjct: 1 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI
Sbjct: 61 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 120
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 180
Query: 673 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 852
RACLYAGIKI GTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGIKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 240
Query: 853 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 1032
KPIPGNWNGAGCHTNFSTKAMREENGLKYIEE+IEKLSKRHQYHIRAYDPKGGLDNARRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNARRL 300
Query: 1033 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 1212
TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPF+VTEALIRTCL
Sbjct: 301 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
Query: 1213 LNETGDEPFQYKN 1251
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
>ref|XP_852110.1| PREDICTED: similar to glutamate-ammonia ligase [Canis familiaris].
Length = 539
Score = 580 bits (1494), Expect(2) = e-170
Identities = 282/353 (79%), Positives = 299/353 (84%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
MATS+S HLNKGIKQVYMSLP GEKVQAM+IWIDGTGEGL CKT TLDSEPK +E+LPEW
Sbjct: 1 MATSSSCHLNKGIKQVYMSLPLGEKVQAMHIWIDGTGEGLHCKTWTLDSEPKGVEQLPEW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSSTFQSEGSNS MYL LVFCEVFK NRKPAETNLRHTCK I
Sbjct: 61 NFDGSSTFQSEGSNSYMYL----------------LVFCEVFKDNRKPAETNLRHTCKWI 104
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDMVSNQHPWFGMEQEYTLMGTDGHPF WPSNGF GPQ PYYCGVG DKAYGRDI+EA Y
Sbjct: 105 MDMVSNQHPWFGMEQEYTLMGTDGHPFDWPSNGFLGPQDPYYCGVGVDKAYGRDIMEAPY 164
Query: 673 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 852
+ACL+AGI+I GTNAE++PAQWEFQIGP EG+DMGDHLWVARFILH VCE+FGV ATFDP
Sbjct: 165 QACLHAGIQIAGTNAELIPAQWEFQIGPWEGVDMGDHLWVARFILHHVCEEFGVTATFDP 224
Query: 853 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 1032
KPIP NWN AGCHTNFSTK E+I LSK+HQYHIRA+DPKGGLDNAR L
Sbjct: 225 KPIPRNWNDAGCHTNFSTK------------ESIATLSKQHQYHIRAHDPKGGLDNARHL 272
Query: 1033 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTE 1191
TGFHETSNIN FSAGVANRGA I IP+TVGQEKKGYFEDRRPSA CDPF+VTE
Sbjct: 273 TGFHETSNIN-FSAGVANRGAGICIPQTVGQEKKGYFEDRRPSATCDPFSVTE 324
Score = 38.5 bits (88), Expect(2) = e-170
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +2
Query: 1166 TVTPLR*QKLSSARVSSTKLATSPSSTKTKWTRRAAIK 1279
T P + SS+ V STKLA +PSSTKTK TR AAI+
Sbjct: 316 TCDPFSVTEPSSSHVFSTKLAMNPSSTKTKRTRLAAIE 353
>ref|XP_855129.1| PREDICTED: similar to glutamate-ammonia ligase [Canis familiaris].
Length = 331
Score = 591 bits (1523), Expect = e-169
Identities = 283/329 (86%), Positives = 290/329 (88%)
Frame = +1
Query: 1 GRAENGRRADGLRSTLGLLASPLRFXXXXXXXXXXXXXXXXXXXMATSASSHLNKGIKQV 180
GRAENG + L S +SP R MATSASSHLNKGIKQV
Sbjct: 5 GRAENGSGGELLSSAPA--SSPHRTSLSQPACPAACDPPRTTSTMATSASSHLNKGIKQV 62
Query: 181 YMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSD 360
YMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPK +EELPEWNFDGSSTFQSEGSNSD
Sbjct: 63 YMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKGVEELPEWNFDGSSTFQSEGSNSD 122
Query: 361 MYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRIMDMVSNQHPWFGMEQE 540
MYLVPAAMFRDPF KDPNKLVFCEVFKYNRKPAETNLRHTCKRIMDMVSNQHPWFGMEQE
Sbjct: 123 MYLVPAAMFRDPFCKDPNKLVFCEVFKYNRKPAETNLRHTCKRIMDMVSNQHPWFGMEQE 182
Query: 541 YTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAE 720
YTLMGTDGHPFGWPSNGFPGPQGPYYCGVG DKAYGRDIVEAHYR+CLYAGI+I GTNAE
Sbjct: 183 YTLMGTDGHPFGWPSNGFPGPQGPYYCGVGVDKAYGRDIVEAHYRSCLYAGIRIAGTNAE 242
Query: 721 VMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNF 900
VMPAQWEFQIGPCEGI+MGDHLWVARFILH VCEDF VIATFD KPIPGNWNGAGCHTNF
Sbjct: 243 VMPAQWEFQIGPCEGINMGDHLWVARFILHHVCEDFRVIATFDLKPIPGNWNGAGCHTNF 302
Query: 901 STKAMREENGLKYIEEAIEKLSKRHQYHI 987
STKAMREENGLKYIEE+IEKLSK HQYHI
Sbjct: 303 STKAMREENGLKYIEESIEKLSKWHQYHI 331
>ref|XP_853458.1| PREDICTED: similar to glutamate-ammonia ligase [Canis familiaris].
Length = 274
Score = 349 bits (895), Expect = 4e-96
Identities = 163/184 (88%), Positives = 169/184 (91%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
MATS SSHLNKGIKQVYMSLPQGEKVQAMY WID TGEGL CKT TLDSEP +EELP W
Sbjct: 1 MATSVSSHLNKGIKQVYMSLPQGEKVQAMYTWIDWTGEGLCCKTWTLDSEPTGVEELPGW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSSTF+SEGSNSD+YLVPAAMFRDPF KD NKLVFCEVFKYNRKPA+TN RHTCKRI
Sbjct: 61 NFDGSSTFKSEGSNSDIYLVPAAMFRDPFCKDSNKLVFCEVFKYNRKPAKTNSRHTCKRI 120
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDMVSNQHPWFGMEQEYT+ GTDGHPFGWPS+GFPGPQGP YCGVGADKAYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTVTGTDGHPFGWPSSGFPGPQGPNYCGVGADKAYGRDIVEAHY 180
Query: 673 RACL 684
R L
Sbjct: 181 RPAL 184
Score = 154 bits (389), Expect = 2e-37
Identities = 74/85 (87%), Positives = 78/85 (91%)
Frame = +1
Query: 997 DPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDP 1176
+PKG LDNA+RLTGFHETSNINDFSAGVAN GAS IP TV EKKGYFEDRRPSANC+P
Sbjct: 190 EPKGSLDNAQRLTGFHETSNINDFSAGVANHGASTCIPWTVCLEKKGYFEDRRPSANCNP 249
Query: 1177 FAVTEALIRTCLLNETGDEPFQYKN 1251
F+VTEALIRTCLLNETGDEPFQYKN
Sbjct: 250 FSVTEALIRTCLLNETGDEPFQYKN 274
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,445,131
Number of extensions: 1983211
Number of successful extensions: 7607
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7584
Number of HSP's successfully gapped: 6
Length of query: 484
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 377
Effective length of database: 15,307,552
Effective search space: 5770947104
Effective search space used: 5770947104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013199
(1453 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035564.1| glutamine synthetase [Bos taurus]. 791 0.0
Alignment gi|XP_002697800.1| PREDICTED: glutamine synthetase-like [Bos ta... 755 0.0
>ref|NP_001035564.1| glutamine synthetase [Bos taurus].
Length = 373
Score = 791 bits (2043), Expect = 0.0
Identities = 370/373 (99%), Positives = 372/373 (99%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
MATSASSHLNKGIKQVYM+LPQG+KVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW
Sbjct: 1 MATSASSHLNKGIKQVYMALPQGDKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI
Sbjct: 61 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 120
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDMVSNQ PWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY
Sbjct: 121 MDMVSNQRPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 180
Query: 673 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 852
RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 240
Query: 853 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 1032
KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
Query: 1033 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 1212
TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL
Sbjct: 301 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 360
Query: 1213 LNETGDEPFQYKN 1251
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
>ref|XP_002697800.1| PREDICTED: glutamine synthetase-like [Bos taurus].
Length = 372
Score = 755 bits (1949), Expect = 0.0
Identities = 354/373 (94%), Positives = 358/373 (95%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
MATS SSHLNKGIKQVYM+LPQG+KVQAMYIWID TGEGLRCKTRTLDSEPKCIEELPEW
Sbjct: 1 MATSVSSHLNKGIKQVYMALPQGDKVQAMYIWIDSTGEGLRCKTRTLDSEPKCIEELPEW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSSTFQSEGSNSDMYLVP AMFRDPF KDPNKLVFCEVFKYNRKPAETNLRHTCKRI
Sbjct: 61 NFDGSSTFQSEGSNSDMYLVPTAMFRDPFHKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 120
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDM+SNQ PWFGMEQ+YTLMGT GHPFGWPSNGFPGPQGPYYCGVG DKAYGRDIVEAHY
Sbjct: 121 MDMMSNQRPWFGMEQKYTLMGTGGHPFGWPSNGFPGPQGPYYCGVGVDKAYGRDIVEAHY 180
Query: 673 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 852
RACLY GIKIGGTN EVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFD
Sbjct: 181 RACLYTGIKIGGTNTEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDS 240
Query: 853 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 1032
KP PGNWNGAGCHTNFSTKAMR ENGLKYIEEAIEKLSKRHQYH RAYDPKGGLDNARRL
Sbjct: 241 KPNPGNWNGAGCHTNFSTKAMR-ENGLKYIEEAIEKLSKRHQYHTRAYDPKGGLDNARRL 299
Query: 1033 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 1212
TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFED RPSANCDPFAVTEALI TCL
Sbjct: 300 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDLRPSANCDPFAVTEALIHTCL 359
Query: 1213 LNETGDEPFQYKN 1251
LNETGDEPFQYKN
Sbjct: 360 LNETGDEPFQYKN 372
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,922,172
Number of extensions: 1940620
Number of successful extensions: 7536
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7504
Number of HSP's successfully gapped: 2
Length of query: 484
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,174,046
Effective search space: 5357789388
Effective search space used: 5357789388
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013199
(1453 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999074.1| glutamine synthetase [Sus scrofa]. 792 0.0
Alignment gi|XP_003357617.1| PREDICTED: regulator of G-protein signaling ... 220 2e-57
>ref|NP_999074.1| glutamine synthetase [Sus scrofa].
Length = 373
Score = 792 bits (2046), Expect = 0.0
Identities = 371/373 (99%), Positives = 371/373 (99%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW
Sbjct: 1 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI
Sbjct: 61 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 120
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 180
Query: 673 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 852
RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 240
Query: 853 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 1032
KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDN RRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNTRRL 300
Query: 1033 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 1212
TGFHETSNINDFSAGVANRGASIRIPRT GQEKKGYFEDRRPSANCDPFAVTEALIRTCL
Sbjct: 301 TGFHETSNINDFSAGVANRGASIRIPRTGGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 360
Query: 1213 LNETGDEPFQYKN 1251
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
>ref|XP_003357617.1| PREDICTED: regulator of G-protein signaling protein-like [Sus
scrofa].
Length = 336
Score = 220 bits (560), Expect = 2e-57
Identities = 105/106 (99%), Positives = 106/106 (100%)
Frame = +1
Query: 934 KYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPR 1113
+YIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPR
Sbjct: 231 RYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPR 290
Query: 1114 TVGQEKKGYFEDRRPSANCDPFAVTEALIRTCLLNETGDEPFQYKN 1251
TVGQEKKGYFEDRRPSANCDPFAVTEALIRTCLLNETGDEPFQYKN
Sbjct: 291 TVGQEKKGYFEDRRPSANCDPFAVTEALIRTCLLNETGDEPFQYKN 336
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,976,998
Number of extensions: 1250667
Number of successful extensions: 4810
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4800
Number of HSP's successfully gapped: 2
Length of query: 484
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 381
Effective length of database: 8,779,541
Effective search space: 3345005121
Effective search space used: 3345005121
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013199
(1453 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032157.2| glutamine synthetase [Mus musculus]. 770 0.0
>ref|NP_032157.2| glutamine synthetase [Mus musculus].
Length = 373
Score = 770 bits (1988), Expect = 0.0
Identities = 356/373 (95%), Positives = 365/373 (97%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
MATSASSHLNKGIKQ+YMSLPQGEKVQAMYIW+DGTGEGLRCKTRTLD EPKC+EELPEW
Sbjct: 1 MATSASSHLNKGIKQMYMSLPQGEKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSSTFQSEGSNSDMYL P AMFRDPFRKDPNKLV CEVFKYNRKPAETNLRH CKRI
Sbjct: 61 NFDGSSTFQSEGSNSDMYLHPVAMFRDPFRKDPNKLVLCEVFKYNRKPAETNLRHICKRI 120
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 180
Query: 673 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 852
RACLYAG+KI GTNAEVMPAQWEFQIGPCEGI MGDHLW+ARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMGDHLWIARFILHRVCEDFGVIATFDP 240
Query: 853 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 1032
KPIPGNWNGAGCHTNFSTKAMREENGLK IEEAI+KLSKRHQYHIRAYDPKGGLDNARRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKCIEEAIDKLSKRHQYHIRAYDPKGGLDNARRL 300
Query: 1033 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 1212
TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDP+AVTEA++RTCL
Sbjct: 301 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCL 360
Query: 1213 LNETGDEPFQYKN 1251
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,484,962
Number of extensions: 1626826
Number of successful extensions: 5859
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5850
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 379
Effective length of database: 12,463,779
Effective search space: 4723772241
Effective search space used: 4723772241
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013199
(1453 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028228.1| glutamine synthetase [Homo sapiens]. 779 0.0
Alignment gi|NP_001028216.1| glutamine synthetase [Homo sapiens]. 779 0.0
Alignment gi|NP_002056.2| glutamine synthetase [Homo sapiens]. 779 0.0
>ref|NP_001028228.1| glutamine synthetase [Homo sapiens].
Length = 373
Score = 779 bits (2012), Expect = 0.0
Identities = 362/373 (97%), Positives = 367/373 (98%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
M TSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKC+EELPEW
Sbjct: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSST QSEGSNSDMYLVPAAMFRDPFRKDPNKLV CEVFKYNR+PAETNLRHTCKRI
Sbjct: 61 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGAD+AYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY 180
Query: 673 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 852
RACLYAG+KI GTNAEVMPAQWEFQIGPCEGI MGDHLWVARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP 240
Query: 853 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 1032
KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
Query: 1033 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 1212
TGFHETSNINDFSAGVANR ASIRIPRTVGQEKKGYFEDRRPSANCDPF+VTEALIRTCL
Sbjct: 301 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
Query: 1213 LNETGDEPFQYKN 1251
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
>ref|NP_001028216.1| glutamine synthetase [Homo sapiens].
Length = 373
Score = 779 bits (2012), Expect = 0.0
Identities = 362/373 (97%), Positives = 367/373 (98%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
M TSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKC+EELPEW
Sbjct: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSST QSEGSNSDMYLVPAAMFRDPFRKDPNKLV CEVFKYNR+PAETNLRHTCKRI
Sbjct: 61 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGAD+AYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY 180
Query: 673 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 852
RACLYAG+KI GTNAEVMPAQWEFQIGPCEGI MGDHLWVARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP 240
Query: 853 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 1032
KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
Query: 1033 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 1212
TGFHETSNINDFSAGVANR ASIRIPRTVGQEKKGYFEDRRPSANCDPF+VTEALIRTCL
Sbjct: 301 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
Query: 1213 LNETGDEPFQYKN 1251
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
>ref|NP_002056.2| glutamine synthetase [Homo sapiens].
Length = 373
Score = 779 bits (2012), Expect = 0.0
Identities = 362/373 (97%), Positives = 367/373 (98%)
Frame = +1
Query: 133 MATSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEW 312
M TSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKC+EELPEW
Sbjct: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW 60
Query: 313 NFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 492
NFDGSST QSEGSNSDMYLVPAAMFRDPFRKDPNKLV CEVFKYNR+PAETNLRHTCKRI
Sbjct: 61 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120
Query: 493 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHY 672
MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGAD+AYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY 180
Query: 673 RACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 852
RACLYAG+KI GTNAEVMPAQWEFQIGPCEGI MGDHLWVARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP 240
Query: 853 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 1032
KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
Query: 1033 TGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCL 1212
TGFHETSNINDFSAGVANR ASIRIPRTVGQEKKGYFEDRRPSANCDPF+VTEALIRTCL
Sbjct: 301 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
Query: 1213 LNETGDEPFQYKN 1251
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 63,317,914
Number of extensions: 1954409
Number of successful extensions: 7134
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7116
Number of HSP's successfully gapped: 3
Length of query: 484
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,802,980
Effective search space: 5595526440
Effective search space used: 5595526440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013199
(1453 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1859 0.0
Sscrofa_Chr09 918 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 1859 bits (938), Expect = 0.0
Identities = 998/1018 (98%), Gaps = 2/1018 (0%)
Strand = Plus / Minus
Query: 362 tgtatcttgtccctgctgccatgtttcgggaccctttccgcaaggaccccaacaagctgg 421
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 29888640 tgtatcttgtccctgctgccatgttttgggaccctttccgcaaggaccccatcaagctgg 29888581
Query: 422 tgttctgtgaggtcttcaagtacaaccgaaagcctgcagagaccaacttaaggcacacct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29888580 tgttctgtgaggtcttcaagtacaaccgaaagcctgcagagaccaacttaaggcacacct 29888521
Query: 482 gtaaacggataatggacatggtgagcaaccagcacccctggtttggaatggagcaggaat 541
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29888520 gtaaatggataatggacatggtgagcaaccagcacccctggtttggaatggagcaggaat 29888461
Query: 542 atactctcatgggcacagatggacacccctttggttggccttccaatggcttccctgggc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29888460 atactctcatgggcacagatggacacccctttggttggccttccaatggcttccctgggc 29888401
Query: 602 cccaaggtccgtactattgtggtgttggagcagacaaagcctatggcagggacattgtgg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29888400 cccaaggtccgtactattgtggtgttggagcagacaaagcctatggcagggacattgtgg 29888341
Query: 662 aggctcactaccgggcctgcttgtatgccggcatcaagattgggggcaccaatgccgagg 721
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 29888340 aggctcactaccaggcctgcttgtatgctggcatcaagattgggggcaccaatgccgagg 29888281
Query: 722 tcatgcccgcccagtgggaattccagatcggaccctgtgaaggaatcgacatgggagatc 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29888280 tcatgcccgcccagtgggaattccagatcggaccctgtgaaggaatcgacatgggagatc 29888221
Query: 782 acctctgggtggcccgattcatcttgcatcgtgtgtgcgaagacttcggagtgatcgcca 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29888220 acctctgggtggcccgattcatcttgcatcgtgtgtgcgaagacttcggagtgatcgcca 29888161
Query: 842 cctttgatcctaagcccattcctgggaactggaatggtgccggctgccacaccaacttta 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29888160 tctttgatcctaagcccattcctgggaactggaatggtgccggctgccacaccaacttta 29888101
Query: 902 gcaccaaggccatgcgagaggagaatggtctgaagtacatcgaggaggccatcgagaagc 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29888100 gcaccaaggccatgcgagaggagaatggtctgaagtacatcgaggaggccatcgagaagc 29888041
Query: 962 taagcaagcggcaccagtaccacatccgagcctacgatcccaaggggggcctggacaacg 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29888040 taagcaagcggcaccagtaccacatccgagcctacgatcccaaggggggcctggacaacg 29887981
Query: 1022 cccggcgcctaactggattccatgaaacctccaacatcaacgacttttctgccggcgtgg 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29887980 cccggcgcctaactggattccatgaaacctccaacatcaacgacttttctgccggcgtgg 29887921
Query: 1082 ccaaccgtggcgctagcatccgcattccccggactgtcggccaggagaagaagggttact 1141
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 29887920 ccaaccgtggcgctagcatccgcattccccagactgtcggccaggagaagaagggttact 29887861
Query: 1142 tcgaagaccgtcgcccttctgccaactgtgacccctttgcggtgacagaagctctcatcc 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29887860 tcgaagaccgtcgcccttctgccaactgtgacccctttgcggtgacagaagctctcatcc 29887801
Query: 1202 gcacgtgtctcctcaacgaaactggcgacgagcccttccagtacaaaaactaagtggact 1261
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29887800 gcacgtgtcttctcaacgaaactggcgacgagcccttccagtacaaaaactaagtggact 29887741
Query: 1262 agacgggcagccatcaaaacccctcctaattctacaccg-nnnnnnnnttcgcccctctc 1320
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 29887740 agacgggcagccatcaaaacccctcctaattctacaccgcccccccgcctcgcccctctc 29887681
Query: 1321 aactgtcgtaatagctgtaactcaaagggccggaatagcaaggtcttttttattcctc 1378
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 29887680 aactgtcataatagctgtaactcaaaggg-cggaatagcaaggtcttttttattcctc 29887624
>Sscrofa_Chr09
|| Length = 153670197
Score = 918 bits (463), Expect = 0.0
Identities = 505/519 (97%), Gaps = 2/519 (0%)
Strand = Plus / Minus
Query: 936 gtacatcgaggaggccatcgagaagctaagcaagcggcaccagtaccacatccgagccta 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135909595 gtacatcgaggaggccatcgagaagctaagcaagcggcaccagtaccacatccgagccta 135909536
Query: 996 cgatcccaaggggggcctggacaacgcccggcgcctaactggattccatgaaacctccaa 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135909535 cgatcccaaggggggcctggacaacgcccggcgcctaactggattccatgaaacctccaa 135909476
Query: 1056 catcaacgacttttctgccggcgtggccaaccgtggcgctagcatccgcattccccggac 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135909475 catcaacgacttttctgccggcgtggccaaccgtggcgctagcatccgcattccccggac 135909416
Query: 1116 tgtcggccaggagaagaagggttacttcgaagaccgtcgcccttctgccaactgtgaccc 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135909415 tgtcggccaggagaagaagggttacttcgaagaccgtcgcccttctgccaactgtgaccc 135909356
Query: 1176 ctttgcggtgacagaagctctcatccgcacgtgtctcctcaacgaaactggcgacgagcc 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135909355 ctttgcggtgacagaagctctcatccgcacgtgtctcctcaacgaaactggcgacgagcc 135909296
Query: 1236 cttccagtacaaaaactaagtggactagacgggcagccatcaaaacccctcctaattcta 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135909295 cttccagtacaaaaactaagtggactagacgggcagccatcaaaacccctcctaattcta 135909236
Query: 1296 caccg-nnnnnnnnttcgcccctctcaactgtcgtaatagctgtaactcaaagggccgga 1354
||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 135909235 caccgcccccccccctcgcccctctcaactgtcgtaatagctgtaactcaaaggg-cgga 135909177
Query: 1355 atagcaaggtcttttttattcctcatgcccaagtaatatctcttgctttctttggccagg 1414
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 135909176 atagcaaggtcttttttattcctcatgcccagttaatatctcttgctttctttggccagg 135909117
Query: 1415 atagagggctcaagttcctaatctcttcacacatacccc 1453
||||||||||||||||||||||||||||||||| |||||
Sbjct: 135909116 atagagggctcaagttcctaatctcttcacacacacccc 135909078
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 734 agtgggaattccagatcggaccctgtgaaggaatcgacatgggagatcacctctgggtgg 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135960639 agtgggaattccagatcggaccctgtgaaggaatcgacatgggagatcacctctgggtgg 135960580
Query: 794 cccgattcatcttgcatcgtgtgtgcgaagacttcggagtgatcgccacctttgatccta 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135960579 cccgattcatcttgcatcgtgtgtgcgaagacttcggagtgatcgccacctttgatccta 135960520
Query: 854 agcccattcctgggaactggaatggtgccggctgccacaccaactttagcaccaaggcca 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135960519 agcccattcctgggaactggaatggtgccggctgccacaccaactttagcaccaaggcca 135960460
Query: 914 tgcgagaggagaatggtctgaagt 937
||||||||||||||||||||||||
Sbjct: 135960459 tgcgagaggagaatggtctgaagt 135960436
Score = 361 bits (182), Expect = 7e-97
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 117 cagaacaccgtccaccatggccacctcagcgagctcccacttgaacaaaggcatcaagca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135965559 cagaacaccgtccaccatggccacctcagcgagctcccacttgaacaaaggcatcaagca 135965500
Query: 177 ggtgtacatgtccctgccccagggcgagaaagtccaagctatgtacatctggattgacgg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135965499 ggtgtacatgtccctgccccagggcgagaaagtccaagctatgtacatctggattgacgg 135965440
Query: 237 tacgggagagggactgcgctgcaagacccggaccctggattctgagcccaagtgtataga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135965439 tacgggagagggactgcgctgcaagacccggaccctggattctgagcccaagtgtataga 135965380
Query: 297 ag 298
||
Sbjct: 135965379 ag 135965378
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 297 agagttgcccgagtggaatttcgatggctctagtacttttcagtctgaaggctccaacag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135963527 agagttgcccgagtggaatttcgatggctctagtacttttcagtctgaaggctccaacag 135963468
Query: 357 tgacatgtatcttgtccctgctgccatgtttcgggaccctttccgcaaggaccccaacaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135963467 tgacatgtatcttgtccctgctgccatgtttcgggaccctttccgcaaggaccccaacaa 135963408
Query: 417 gctggtgttctgtgaggtcttcaagtacaaccgaaagcctgcag 460
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135963407 gctggtgttctgtgaggtcttcaagtacaaccgaaagcctgcag 135963364
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 459 agagaccaacttaaggcacacctgtaaacggataatggacatggtgagcaaccagcaccc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135961505 agagaccaacttaaggcacacctgtaaacggataatggacatggtgagcaaccagcaccc 135961446
Query: 519 ctggtttggaatggagcaggaatatactctcatgggcacagatggacacccctttggttg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135961445 ctggtttggaatggagcaggaatatactctcatgggcacagatggacacccctttggttg 135961386
Query: 579 gccttccaatggcttccctgggccccaaggt 609
|||||||||||||||||||||||||||||||
Sbjct: 135961385 gccttccaatggcttccctgggccccaaggt 135961355
Score = 258 bits (130), Expect = 8e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 606 aggtccgtactattgtggtgttggagcagacaaagcctatggcagggacattgtggaggc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135960961 aggtccgtactattgtggtgttggagcagacaaagcctatggcagggacattgtggaggc 135960902
Query: 666 tcactaccgggcctgcttgtatgccggcatcaagattgggggcaccaatgccgaggtcat 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135960901 tcactaccgggcctgcttgtatgccggcatcaagattgggggcaccaatgccgaggtcat 135960842
Query: 726 gcccgcccag 735
||||||||||
Sbjct: 135960841 gcccgcccag 135960832
Score = 77.8 bits (39), Expect = 2e-11
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 2 gcagagccgagaatgggagaagagcggatggtttaaggagcac 44
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 135968464 gcagagccgagaatgggagaagagcggatggattaaggagcac 135968422
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,606,681
Number of extensions: 146
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 10
Length of query: 1453
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1432
Effective length of database: 2,808,413,156
Effective search space: 4021647639392
Effective search space used: 4021647639392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)