Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013201
(1081 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041491.1| C-X-C chemokine receptor type 4 [Canis lupus... 640 0.0
Alignment gi|NP_001003020.1| C-C chemokine receptor type 4 [Canis lupus f... 228 6e-60
Alignment gi|NP_001011887.1| C-X-C chemokine receptor type 3 [Canis lupus... 223 2e-58
Alignment gi|XP_548131.2| PREDICTED: similar to C-C chemokine receptor ty... 211 7e-55
Alignment gi|XP_541909.2| PREDICTED: similar to chemokine (C-C motif) rec... 210 2e-54
Alignment gi|XP_546496.2| PREDICTED: similar to Burkitt lymphoma receptor... 208 8e-54
Alignment gi|NP_001003151.1| C-X-C chemokine receptor type 2 [Canis lupus... 207 1e-53
Alignment gi|XP_536065.1| PREDICTED: similar to High affinity interleukin... 204 1e-52
Alignment gi|XP_541197.2| PREDICTED: similar to C-C chemokine receptor ty... 203 3e-52
Alignment gi|XP_851110.1| PREDICTED: similar to C-C chemokine receptor ty... 203 3e-52
>ref|NP_001041491.1| C-X-C chemokine receptor type 4 [Canis lupus familiaris].
Length = 353
Score = 640 bits (1650), Expect = 0.0
Identities = 315/330 (95%), Positives = 321/330 (97%)
Frame = +1
Query: 91 MDGFRIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV 270
M+ I+ SDNYTE+DLGSGDYDS+KEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV
Sbjct: 1 MEELHIYPSDNYTEEDLGSGDYDSMKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV 60
Query: 271 ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN 450
ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAV+AVANWYFG FLCKAVHVIYTVN
Sbjct: 61 ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVEAVANWYFGNFLCKAVHVIYTVN 120
Query: 451 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE 630
LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE
Sbjct: 121 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE 180
Query: 631 GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 810
D RYICDRFYPND WLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK
Sbjct: 181 ADDRYICDRFYPNDSWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 240
Query: 811 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 990
TTVILILAFFACWLPYYIGISIDSFILLEII+QGCEFE TVHKWISITEALAFFHCCLNP
Sbjct: 241 TTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFEKTVHKWISITEALAFFHCCLNP 300
Query: 991 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 1080
ILYAFLGAKFKTSAQHALTSVSRGSSLKIL
Sbjct: 301 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 330
>ref|NP_001003020.1| C-C chemokine receptor type 4 [Canis lupus familiaris].
Length = 360
Score = 228 bits (582), Expect = 6e-60
Identities = 113/292 (38%), Positives = 173/292 (59%), Gaps = 2/292 (0%)
Frame = +1
Query: 154 YDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 333
Y++I +PC +E F +FLP +YS++FL G++GN +V++V+ K+L+SMTD Y L+L
Sbjct: 22 YENIPKPCTKEGIKAFGELFLPPLYSLVFLFGLLGNSVVVVVLFKYKRLKSMTDVYLLNL 81
Query: 334 SVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVH 513
+++DLLFVL+LPFW A W FG LCK + +Y V YS + + +S+DRYLAIVH
Sbjct: 82 AISDLLFVLSLPFWGYYAADQWVFGLGLCKIISWMYLVGFYSGIFFIMLMSIDRYLAIVH 141
Query: 514 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYPND--LWLVV 687
A S R R L + + W A+L ++P +F+ C Y + W V+
Sbjct: 142 AVFSLRARTLTYGVITSLATWSVAVLASLPGLLFSTCYTERNHTYCKTKYSRNSTRWKVL 201
Query: 688 FQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIG 867
+ ++GL++P +L CY +II L H K +K KA++ ++ F W PY +
Sbjct: 202 SSLEINILGLVIPLGTMLFCYSMIIRTLQHCKNEKKSKAVRMVFAVVALFLGFWAPYNVV 261
Query: 868 ISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
+ +++ + LE++Q C FE + I TE LAF HCCLNP++Y FLG KF+
Sbjct: 262 LFLETLVELEVLQD-CTFERHLDYAIQATETLAFVHCCLNPVIYFFLGEKFR 312
>ref|NP_001011887.1| C-X-C chemokine receptor type 3 [Canis lupus familiaris].
Length = 365
Score = 223 bits (569), Expect = 2e-58
Identities = 116/306 (37%), Positives = 177/306 (57%), Gaps = 2/306 (0%)
Frame = +1
Query: 112 TSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQ 291
+S +Y E++ D PC ++ + +F+R FLP +Y ++FL G++GNG V V+ Q
Sbjct: 25 SSYDYAENE---SDSCCASPPCPQDISLNFDRAFLPALYGLLFLLGLLGNGAVAAVLCSQ 81
Query: 292 KKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLI 471
+ R+ TD + LHL+VAD+L VLTLP W VD W FG LCK ++ +N Y+ L+
Sbjct: 82 RAARTSTDTFLLHLAVADMLLVLTLPLWRVDTAVQWVFGSGLCKVAGALFNINFYAGALL 141
Query: 472 LAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIF--ANVREGDGRY 645
LA IS DRYL+IVHAT R + V VW L IPDFIF AN E
Sbjct: 142 LACISFDRYLSIVHATQPYRRGPPARVTLTCVVVWGLCLFFAIPDFIFLSANRDERLNAM 201
Query: 646 ICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVIL 825
C +P + + ++ G +LP +V+ CY I++ L S+G ++++ ++ V++
Sbjct: 202 HCRYNFP-QVGRTALRGLQLVAGFLLPLLVMAYCYARILAVLLVSRGQRRQRRMRLVVVV 260
Query: 826 ILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAF 1005
++AF CW PY++ + +D+ + L + + C ES V S+T L + HCCLNP+LYAF
Sbjct: 261 VVAFALCWTPYHLVVLVDTLMDLGALDRNCGRESRVDVAKSVTSGLGYMHCCLNPLLYAF 320
Query: 1006 LGAKFK 1023
+G KF+
Sbjct: 321 VGVKFR 326
>ref|XP_548131.2| PREDICTED: similar to C-C chemokine receptor type 7 precursor (C-C
CKR-7) (CC-CKR-7) (CCR-7) (MIP-3 beta receptor)
(EBV-induced G-protein coupled receptor 1) (EBI1) (BLR2)
[Canis familiaris].
Length = 379
Score = 211 bits (538), Expect = 7e-55
Identities = 112/311 (36%), Positives = 181/311 (58%), Gaps = 8/311 (2%)
Frame = +1
Query: 118 DNYTEDDLGSG---DYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGY 288
D T+D +G DY + CF+++ +F FLP +YSII G++GNGLV+L Y
Sbjct: 26 DEVTDDYIGENTTVDYTLYESVCFKKDVRNFKAWFLPIMYSIICFMGLLGNGLVVLTYIY 85
Query: 289 QKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVL 468
K+L++MTD Y L+L++AD+LF+LTLPFWA A +W FG +CK + IY ++ +S +L
Sbjct: 86 FKRLKTMTDTYLLNLAMADILFLLTLPFWAYSAAKSWTFGVHVCKIIFGIYKISFFSGML 145
Query: 469 ILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGR 642
+L IS+DRY+AIV A ++ R R L K+ VG+W+ A++L+ P+ +++ +++
Sbjct: 146 LLLCISIDRYVAIVQAVSAHRHRARVLFISKLSCVGIWMLAMVLSTPELLYSGLQKSSSE 205
Query: 643 YI--CDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTT 816
C L+ Q ++VG ++P + CY +II L ++ +++ KA+K
Sbjct: 206 QALRCSLNTNQVEALITIQVAQMVVGFLIPLGAMSFCYLVIIRTLLQARNFERNKAIKVI 265
Query: 817 VILILAFFACWLPYYIGISIDSFILLEIIQQG-CEFESTVHKWISITEALAFFHCCLNPI 993
+ +++ F A LPY I + I G CE ++ IT +LA CC+NP
Sbjct: 266 IAVVVVFIAFQLPYNGVILAQTVANFNITGSGSCELSKQLNIAYDITYSLACVRCCVNPF 325
Query: 994 LYAFLGAKFKT 1026
LYAF+G KF++
Sbjct: 326 LYAFIGVKFRS 336
>ref|XP_541909.2| PREDICTED: similar to chemokine (C-C motif) receptor 9 isoform A
[Canis familiaris].
Length = 367
Score = 210 bits (534), Expect = 2e-54
Identities = 110/299 (36%), Positives = 171/299 (57%), Gaps = 6/299 (2%)
Frame = +1
Query: 175 CFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF 354
C + F FLP +Y ++F+ G +GN LVILV Y ++++MTD + L+L++ADLLF
Sbjct: 36 CQKGHVRQFASHFLPPLYWLVFIVGTLGNSLVILVYCYCTRVKTMTDMFLLNLAIADLLF 95
Query: 355 VLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQ-- 528
+ TLPFWA+ A W F LCK V+ +Y +N YS VL++ IS+DRY+AI AT +Q
Sbjct: 96 LFTLPFWAIAAADQWKFQTPLCKVVNSMYKMNFYSCVLLIMCISVDRYIAIAQATKAQTW 155
Query: 529 RPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYPND----LWLVVFQF 696
R ++L+ K+V VW+ A L IP+ +++ ++E IC YP+D + VV
Sbjct: 156 RQKRLVYSKMVCFTVWVVAATLCIPELLYSQLKEESDITICTMVYPSDQNSKVKSVVLTL 215
Query: 697 QHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIGISI 876
+ +++G LP +V+ CY III L ++ K KALK T+ ++ F PY + +
Sbjct: 216 K-VILGFFLPFVVMACCYTIIIYTLLQARKSSKHKALKVTITVLTVFVLSQFPYNCILLV 274
Query: 877 DSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSV 1053
+ + C + V +T+ +AFFH CLNP+LY F+G +F+ L S+
Sbjct: 275 QTIDAYTVFLSNCAISTNVDICFQVTQTIAFFHSCLNPVLYVFVGERFRRDLVKTLKSL 333
>ref|XP_546496.2| PREDICTED: similar to Burkitt lymphoma receptor 1 [Canis familiaris].
Length = 374
Score = 208 bits (529), Expect = 8e-54
Identities = 116/331 (35%), Positives = 185/331 (55%), Gaps = 20/331 (6%)
Frame = +1
Query: 121 NYTEDDLGS--GDY-DSIKEP------CFREEN---AHFNRIFLPTVYSIIFLTGIVGNG 264
NY +D+ G+Y DS + P C E A F +F+P Y IFL G++GN
Sbjct: 13 NYNLEDMYKELGNYSDSTESPVVENHLCSMVEGPLLASFKAVFMPVAYGFIFLLGMMGNI 72
Query: 265 LVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYT 444
LV++++ ++ RS T+ + HL+VADLL V LPF V+ W G FLCK V ++
Sbjct: 73 LVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAVVEGSLGWLLGTFLCKTVIALHK 132
Query: 445 VNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV 624
VN Y S L+LA I++DRYLAIVHA ++ R R+LL+ + +W+ + L +P+ +FA V
Sbjct: 133 VNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCATIWLVSCLFALPEILFAKV 192
Query: 625 RE---GDGRYICDRFYPN----DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHS- 780
+ D C N + W +F + + G +LP +V+ CY ++ +L +
Sbjct: 193 SQPHHNDSLPRCTFSQENRAETNAWF-TSRFLYHLGGFLLPMLVMGWCYVGVVHRLCQAQ 251
Query: 781 KGYQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEA 960
+ Q++KA++ +++ FF CW PY++ I +D+ + L+ + GCE + I+++E
Sbjct: 252 RRPQRQKAVRVAILVTSVFFLCWSPYHVVIFLDTLVRLKTVGYGCELNGYLSVAITMSEF 311
Query: 961 LAFFHCCLNPILYAFLGAKFKTSAQHALTSV 1053
L HCCLNP+LY F G KF++ LT +
Sbjct: 312 LGLAHCCLNPMLYTFAGVKFRSDLSRLLTKL 342
>ref|NP_001003151.1| C-X-C chemokine receptor type 2 [Canis lupus familiaris].
Length = 356
Score = 207 bits (527), Expect = 1e-53
Identities = 121/331 (36%), Positives = 184/331 (55%), Gaps = 20/331 (6%)
Frame = +1
Query: 118 DNYTEDDLGSGDYDSI------------KEPCFREENAHFNRIFLPTVYSIIFLTGIVGN 261
DNY+ +DL GD D+ PC R E+ N+ + +Y ++F+ ++GN
Sbjct: 7 DNYSLEDL-FGDIDNYTYNTEMPIIPADSAPC-RPESLDINKYAVVVIYVLVFVLNLLGN 64
Query: 262 GLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIY 441
LVI+V+ Y + S+TD Y L+L++ADLLF LTLP WAV V W FG LCK V ++
Sbjct: 65 SLVIMVVLYSRVSHSVTDVYLLNLAIADLLFALTLPIWAVSKVKGWIFGTPLCKIVSLLK 124
Query: 442 TVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFAN 621
VN YS +L+LA IS+DRYLAIVHAT +K K + +G+W +L+L++P F+F
Sbjct: 125 EVNFYSGILLLASISMDRYLAIVHATRRLTQKKHWV-KFICLGIWALSLILSLPIFVFRR 183
Query: 622 -VREGDGRYIC--DRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQ 792
+ +C D +V + G I+P +++L CY + + L + Q
Sbjct: 184 AINPPYSSPVCYEDMGTNTTKLRIVMRALPQTFGFIVPLMIMLFCYGLTLRTLFEAHMGQ 243
Query: 793 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFF 972
K +A++ ++L F CWLPY + D+ + L+ I++ C+ + + + + TE L FF
Sbjct: 244 KHRAMRVIFAVVLVFLLCWLPY--NLVADTLMRLQAIEETCQRRNDIGRALDATEILGFF 301
Query: 973 HCCLNPILYAFLGAKF-----KTSAQHALTS 1050
H CLNP++YAF+G KF K A H L S
Sbjct: 302 HSCLNPLIYAFIGQKFRHGLLKIMAFHGLIS 332
>ref|XP_536065.1| PREDICTED: similar to High affinity interleukin-8 receptor B (IL-8R
B) (CXCR-2) (GRO/MGSA receptor) (IL-8 receptor type 2)
(CDw128b) [Canis familiaris].
Length = 358
Score = 204 bits (519), Expect = 1e-52
Identities = 113/304 (37%), Positives = 176/304 (57%), Gaps = 8/304 (2%)
Frame = +1
Query: 163 IKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVA 342
I PC + + N+ + +Y+++F+ ++GN LVILV+ Y + S+TD Y L+L++A
Sbjct: 33 IYSPC-KIDTETLNKYAVVVIYALVFVLSLLGNSLVILVVLYSQIGHSVTDVYLLNLAIA 91
Query: 343 DLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATN 522
DLLF LTLP WAV V W FG LCK V ++ VN YS +L+LA IS+DRYLAIVHAT
Sbjct: 92 DLLFALTLPIWAVSKVKGWIFGTPLCKIVSLLKEVNFYSGILLLACISMDRYLAIVHATR 151
Query: 523 SQRPRKLLAEKVVYVGVWIPALLLTIPDFIFAN-VREGDGRYIC--DRFYPNDLWLVVFQ 693
+ +K K + +G+W +L+L++P F+F + +C D +V +
Sbjct: 152 -RLTQKRHWVKFICLGIWALSLILSLPIFVFRRAINPPYSSPVCYEDMGTNTTKLRIVMR 210
Query: 694 FQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIGIS 873
G I+P +++L CY + + L + QK +A++ ++L F CWLPY + +
Sbjct: 211 ALPQTFGFIVPLMIMLFCYGLTLRTLFEAHMGQKHRAMRVIFAVVLVFLLCWLPYNLVLV 270
Query: 874 IDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKF-----KTSAQH 1038
D+ + L+ I++ C+ + + + + TE L FFH CLNP++YAF+G KF K A H
Sbjct: 271 ADTLMRLQAIEETCQRRNDIGRALDATEILGFFHSCLNPLIYAFIGQKFRHGLLKIMAFH 330
Query: 1039 ALTS 1050
L S
Sbjct: 331 GLIS 334
>ref|XP_541197.2| PREDICTED: similar to C-C chemokine receptor type 6 (C-C CKR-6)
(CC-CKR-6) (CCR-6) (LARC receptor) (GPR-CY4) (GPRCY4)
(Chemokine receptor-like 3) (CKR-L3) (DRY6) isoform 1
[Canis familiaris].
Length = 376
Score = 203 bits (516), Expect = 3e-52
Identities = 112/325 (34%), Positives = 183/325 (56%), Gaps = 13/325 (4%)
Frame = +1
Query: 91 MDGFRIFTSDNYTEDDLGSG----DY--DSIKEPCFREENAHFNRIFLPTVYSIIFLTGI 252
MD +F +DDLGSG DY D C +E F+ +F+P YS+I + G+
Sbjct: 6 MDAVSVF---GINDDDLGSGNSSLDYLLDDDSLLCSLQEVREFSELFVPIAYSLICVFGL 62
Query: 253 VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVD-AVANWYFGKFLCKAV 429
+GN LV++ + KK +SMTD Y L++++AD+LFVLTLPFWAV A W F CK +
Sbjct: 63 LGNILVVVTFAFYKKAKSMTDVYLLNMAIADILFVLTLPFWAVSHATGEWIFSNATCKLM 122
Query: 430 HVIYTVNLYSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIP 603
IY +N +L+L IS+DRY+AIV AT S R R L ++ + VW+ ++L++
Sbjct: 123 KGIYAINFNCGMLLLTCISMDRYIAIVQATKSFRLRSRTLAHRGIICLVVWVVSVLISGW 182
Query: 604 DFIFANVREGDGRYICDRFYPND----LWLVVFQFQHIMVGLILPGIVILSCYCIIISKL 771
F+F G +C+ Y W ++ ++ G +P + ++ CY I+ L
Sbjct: 183 TFMFNQKYHVQGSDVCEPRYHEGSNPIKWKLLMLGLQLLFGFFIPLVFMIFCYMFIVKTL 242
Query: 772 SHSKGYQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISI 951
++ ++ KA++ + ++L F AC +P+ + + + + + L + + C + + ++
Sbjct: 243 VQAQNSKRHKAIRVIIAVVLVFLACQIPHNMVLLVTA-VQLGRMNRLCHNQKLLAYATNV 301
Query: 952 TEALAFFHCCLNPILYAFLGAKFKT 1026
TE LAF HCCLNP+LYAF+G KF++
Sbjct: 302 TEVLAFLHCCLNPVLYAFIGQKFRS 326
>ref|XP_851110.1| PREDICTED: similar to C-C chemokine receptor type 6 (C-C CKR-6)
(CC-CKR-6) (CCR-6) (LARC receptor) (GPR-CY4) (GPRCY4)
(Chemokine receptor-like 3) (CKR-L3) (DRY6) isoform 2
[Canis familiaris].
Length = 376
Score = 203 bits (516), Expect = 3e-52
Identities = 112/325 (34%), Positives = 183/325 (56%), Gaps = 13/325 (4%)
Frame = +1
Query: 91 MDGFRIFTSDNYTEDDLGSG----DY--DSIKEPCFREENAHFNRIFLPTVYSIIFLTGI 252
MD +F +DDLGSG DY D C +E F+ +F+P YS+I + G+
Sbjct: 6 MDAVSVF---GINDDDLGSGNSSLDYLLDDDSLLCSLQEVREFSELFVPIAYSLICVFGL 62
Query: 253 VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVD-AVANWYFGKFLCKAV 429
+GN LV++ + KK +SMTD Y L++++AD+LFVLTLPFWAV A W F CK +
Sbjct: 63 LGNILVVVTFAFYKKAKSMTDVYLLNMAIADILFVLTLPFWAVSHATGEWIFSNATCKLM 122
Query: 430 HVIYTVNLYSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIP 603
IY +N +L+L IS+DRY+AIV AT S R R L ++ + VW+ ++L++
Sbjct: 123 KGIYAINFNCGMLLLTCISMDRYIAIVQATKSFRLRSRTLAHRGIICLVVWVVSVLISGW 182
Query: 604 DFIFANVREGDGRYICDRFYPND----LWLVVFQFQHIMVGLILPGIVILSCYCIIISKL 771
F+F G +C+ Y W ++ ++ G +P + ++ CY I+ L
Sbjct: 183 TFMFNQKYHVQGSDVCEPRYHEGSNPIKWKLLMLGLQLLFGFFIPLVFMIFCYMFIVKTL 242
Query: 772 SHSKGYQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISI 951
++ ++ KA++ + ++L F AC +P+ + + + + + L + + C + + ++
Sbjct: 243 VQAQNSKRHKAIRVIIAVVLVFLACQIPHNMVLLVTA-VQLGRMNRLCHNQKLLAYATNV 301
Query: 952 TEALAFFHCCLNPILYAFLGAKFKT 1026
TE LAF HCCLNP+LYAF+G KF++
Sbjct: 302 TEVLAFLHCCLNPVLYAFIGQKFRS 326
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,147,063
Number of extensions: 1233232
Number of successful extensions: 4565
Number of sequences better than 1.0e-05: 188
Number of HSP's gapped: 4109
Number of HSP's successfully gapped: 193
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013201
(1081 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776726.1| C-X-C chemokine receptor type 4 [Bos taurus]. 642 0.0
Alignment gi|NP_001093763.1| C-C chemokine receptor type 4 [Bos taurus]. 232 4e-61
Alignment gi|NP_001011673.1| C-X-C chemokine receptor type 3 [Bos taurus]. 226 4e-59
Alignment gi|NP_001020101.2| C-C chemokine receptor type 7 precursor [Bos... 213 2e-55
Alignment gi|NP_001094755.1| C-X-C chemokine receptor type 2 [Bos taurus]. 211 7e-55
Alignment gi|NP_001091537.1| C-C chemokine receptor type 9 [Bos taurus]. 209 3e-54
Alignment gi|NP_001011675.1| C-X-C chemokine receptor type 5 [Bos taurus]. 204 8e-53
Alignment gi|NP_001015581.1| chemokine-binding protein 2 [Bos taurus]. 202 5e-52
Alignment gi|NP_001181890.1| C-C chemokine receptor type 6 [Bos taurus]. 199 4e-51
Alignment gi|NP_001098508.1| interleukin 8 receptor alpha [Bos taurus]. 197 1e-50
>ref|NP_776726.1| C-X-C chemokine receptor type 4 [Bos taurus].
Length = 353
Score = 642 bits (1657), Expect = 0.0
Identities = 314/330 (95%), Positives = 325/330 (98%)
Frame = +1
Query: 91 MDGFRIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV 270
M+G RIFTSDNYTEDDLGSGDYDS+KEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV
Sbjct: 1 MEGIRIFTSDNYTEDDLGSGDYDSMKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV 60
Query: 271 ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN 450
ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN
Sbjct: 61 ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN 120
Query: 451 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE 630
LYSSVLILAFISLDRYLAIVHATNSQ+PRKLLAEKVVYVGVW+PA+LLTIPD IFA+++E
Sbjct: 121 LYSSVLILAFISLDRYLAIVHATNSQKPRKLLAEKVVYVGVWLPAVLLTIPDLIFADIKE 180
Query: 631 GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 810
D RYICDRFYP+DLWLVVFQFQHI+VGL+LPGIVILSCYCIIISKLSHSKGYQKRKALK
Sbjct: 181 VDERYICDRFYPSDLWLVVFQFQHIVVGLLLPGIVILSCYCIIISKLSHSKGYQKRKALK 240
Query: 811 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 990
TTVILIL FFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP
Sbjct: 241 TTVILILTFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 300
Query: 991 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 1080
ILYAFLGAKFKTSAQHALTSVSRGSSLKIL
Sbjct: 301 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 330
>ref|NP_001093763.1| C-C chemokine receptor type 4 [Bos taurus].
Length = 359
Score = 232 bits (592), Expect = 4e-61
Identities = 115/292 (39%), Positives = 176/292 (60%), Gaps = 2/292 (0%)
Frame = +1
Query: 154 YDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 333
Y+++ +PC ++ F +FLP +YS++FL G++GN +V+LV+ K+L+SMTD Y L+L
Sbjct: 22 YENLPKPCNKDGIRAFGGLFLPPLYSLVFLFGLLGNSVVVLVLFKYKRLKSMTDVYLLNL 81
Query: 334 SVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVH 513
+++DLLFVL+LPFW A W FG LCK + IY V YS + + +S+DRYLAIVH
Sbjct: 82 AISDLLFVLSLPFWGYYAADQWVFGLGLCKLISWIYLVGFYSGIFFITLMSIDRYLAIVH 141
Query: 514 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYP--NDLWLVV 687
A S R R L + V W A+L+++P +F+ C Y + W V+
Sbjct: 142 AIFSLRARTLTYGVITSVATWSVAVLVSLPGLLFSTCYTERNHTYCKTKYSFNSTRWKVL 201
Query: 688 FQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIG 867
+ ++GL++P ++L CY +II L H K +K KA+K +++ F W PY +
Sbjct: 202 SSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKAVKMIFAVVVLFLGFWTPYNVV 261
Query: 868 ISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
+ +++ + LE++Q C FE + I TE LAF HCCLNP++Y FLG KF+
Sbjct: 262 LFLETLVELEVLQD-CTFERHLDYAIQTTETLAFVHCCLNPVIYFFLGEKFR 312
>ref|NP_001011673.1| C-X-C chemokine receptor type 3 [Bos taurus].
Length = 366
Score = 226 bits (575), Expect = 4e-59
Identities = 111/286 (38%), Positives = 173/286 (60%), Gaps = 2/286 (0%)
Frame = +1
Query: 172 PCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLL 351
PC ++ + +F+R FLP +YS++F+ G++GNG+V +V+ Q+ S TD + LHL+VAD L
Sbjct: 40 PCPQDFSLNFDRTFLPVLYSLLFVLGLLGNGIVAVVLLSQRAALSSTDTFLLHLAVADAL 99
Query: 352 FVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQR 531
VLTLP WAVDA W FG LCK ++ +N Y+ L+LA IS DRYL+IVHAT R
Sbjct: 100 LVLTLPLWAVDAAIQWVFGSGLCKVAGALFNINFYAGALLLACISFDRYLSIVHATQLYR 159
Query: 532 PRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGD--GRYICDRFYPNDLWLVVFQFQHI 705
+ V VW LL +PDFIF + + C +P + + +
Sbjct: 160 RGPPTRVALTCVAVWGLCLLFALPDFIFLSSHHDNRLNATHCQYNFPQE-GHTALRILQL 218
Query: 706 MVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIGISIDSF 885
+ G +LP +V+ CY I++ L S+G ++ +A++ V++++AF CW PY++ + +D+
Sbjct: 219 VAGFLLPLLVMAYCYARILAVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDTL 278
Query: 886 ILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
+ L + + C ES+V S+T + + HCCLNP+LYAF+G KF+
Sbjct: 279 MDLGALARNCGRESSVDIAKSVTSGMGYMHCCLNPLLYAFVGVKFR 324
>ref|NP_001020101.2| C-C chemokine receptor type 7 precursor [Bos taurus].
Length = 379
Score = 213 bits (543), Expect = 2e-55
Identities = 111/312 (35%), Positives = 186/312 (59%), Gaps = 9/312 (2%)
Frame = +1
Query: 118 DNYTEDDLGSG---DYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGY 288
D T+D +G DY + CF+++ +F FLP +YSII G++GNGLV+L Y
Sbjct: 26 DEVTDDYIGDNTTVDYTLYESVCFKKDVRNFKAWFLPIMYSIICFVGLLGNGLVMLTYIY 85
Query: 289 QKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVL 468
K+L++MTD Y L+L++AD+LF+LTLPFWA A +W FG +CK + IY ++ +S +L
Sbjct: 86 FKRLKTMTDTYLLNLALADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGML 145
Query: 469 ILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGR 642
+L IS+DRY+AIV A ++ R R LL K+ +G+W+ A++L+ P+ +++ +++
Sbjct: 146 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCLGIWMLAIVLSTPEVMYSGIQKSSSE 205
Query: 643 YI--CDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTT 816
C + L+ Q ++VG ++P + + CY +II L ++ +++ KA+K
Sbjct: 206 QALRCSLVTEHVEALITIQVAQMVVGFLIPLMAMSFCYLVIIRTLLQARNFERNKAIKVI 265
Query: 817 VILILAFFACWLPYYIGISIDSFILLEIIQQG--CEFESTVHKWISITEALAFFHCCLNP 990
+ +++ F A LPY G+ + + I G CE ++ +T +LA CC+NP
Sbjct: 266 IAVVVVFVAFQLPYN-GVVLAQTVANFNITSGTSCELSKQLNIAYDVTYSLACVRCCVNP 324
Query: 991 ILYAFLGAKFKT 1026
LYAF+G KF++
Sbjct: 325 FLYAFIGVKFRS 336
>ref|NP_001094755.1| C-X-C chemokine receptor type 2 [Bos taurus].
Length = 363
Score = 211 bits (538), Expect = 7e-55
Identities = 116/329 (35%), Positives = 184/329 (55%), Gaps = 15/329 (4%)
Frame = +1
Query: 109 FTSDNYTEDDLGSGDYDSI-------KEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGL 267
F +NY+++D G+ Y++ PC R E N+ + +Y+++FL ++GN L
Sbjct: 13 FNWENYSDEDFGNYSYNTDLPSILTDSAPC-RPEILDINKHAVVVIYALVFLLSLLGNSL 71
Query: 268 VILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTV 447
V+LV+ Y + RS+TD Y L+L++ADLLF +TLP WA W FG LCK V ++ V
Sbjct: 72 VMLVILYSRIGRSVTDVYLLNLAMADLLFAMTLPIWAASKAKGWVFGTPLCKVVSLLKEV 131
Query: 448 NLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFAN-V 624
N YS +L+LA IS+DRYLAIVHAT + ++ K + +G+W +++L +P FIF +
Sbjct: 132 NFYSGILLLACISMDRYLAIVHATRTLTQKRHWV-KFICLGIWALSVILALPVFIFRRAI 190
Query: 625 REGDGRYIC--DRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKR 798
+C D W +V + G +LP +V+L CY + L ++ QK
Sbjct: 191 HPPYSSAVCYEDMGANTTKWRMVMRVLPQTFGFLLPLLVMLFCYGFTLRTLFSAQMGQKH 250
Query: 799 KALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHC 978
+A++ ++L F CWLPY + + +D+ + +I + C+ + + + + TE L F H
Sbjct: 251 RAMRVIFAVVLVFLLCWLPYNLVLIVDTLMRAHVIAETCQRRNDIGRALDATEILGFLHS 310
Query: 979 CLNPILYAFLGAKF-----KTSAQHALTS 1050
CLNP++Y F+G KF K A H L S
Sbjct: 311 CLNPLIYVFIGQKFRHGLLKIMAIHGLIS 339
>ref|NP_001091537.1| C-C chemokine receptor type 9 [Bos taurus].
Length = 367
Score = 209 bits (533), Expect = 3e-54
Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 8/311 (2%)
Frame = +1
Query: 115 SDNYTEDDLGSGDYDSIKEPCFREEN--AHFNRIFLPTVYSIIFLTGIVGNGLVILVMGY 288
SD+Y D +YD F E++ F FLP +Y ++F+ G VGN LVILV Y
Sbjct: 14 SDDYGYDGTLPMEYDGNFTDYFCEKSHVRQFAGHFLPPLYWLVFIVGGVGNSLVILVYWY 73
Query: 289 QKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVL 468
++++MTD + L+L++ADLLF+ TLPFWA+ A W F F+CK V+ +Y +N YS VL
Sbjct: 74 CTRVKTMTDMFLLNLAIADLLFLATLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYSCVL 133
Query: 469 ILAFISLDRYLAIVHATNSQ--RPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGR 642
++ IS+DRY+AI A +Q R ++LL K+V +W+ A L +P+ +++ V+E G
Sbjct: 134 LIMCISVDRYIAIAQAMRAQMWRQKRLLYSKMVCFTIWVTAAALCLPELLYSQVKEEHGI 193
Query: 643 YICDRFYPND----LWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 810
IC Y +D L V + +++G LP +V+ CY III L +K K KALK
Sbjct: 194 AICTMVYSSDDSTKLKSAVLTLK-VILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKALK 252
Query: 811 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 990
T+ ++ F P+ + + + + C + +T+ +AFFH CLNP
Sbjct: 253 VTITVLTVFVLSQFPHNCVLLVQTIDAYAMFISSCALSIKIDICFQVTQTVAFFHSCLNP 312
Query: 991 ILYAFLGAKFK 1023
+LY F+G +F+
Sbjct: 313 VLYVFVGERFR 323
>ref|NP_001011675.1| C-X-C chemokine receptor type 5 [Bos taurus].
Length = 374
Score = 204 bits (520), Expect = 8e-53
Identities = 110/331 (33%), Positives = 180/331 (54%), Gaps = 20/331 (6%)
Frame = +1
Query: 121 NYTEDDLGS--GDYDSIKEPCFREEN----------AHFNRIFLPTVYSIIFLTGIVGNG 264
NY +DL G Y+ E +E + F +F+P Y +IFL G++GN
Sbjct: 13 NYNLEDLYKELGSYNDSTETPIKENHLCLTVEGPLLTSFKAVFMPVAYGLIFLLGVMGNI 72
Query: 265 LVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYT 444
LV++++ ++ RS T+ + HL+VADLL V LPF ++ W G FLCK V ++
Sbjct: 73 LVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAVAESSVGWVLGTFLCKTVISLHK 132
Query: 445 VNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV 624
+N Y S L+LA I++DRYLAIVHA ++ R R+LL+ + +W+ +P+ +FA V
Sbjct: 133 INFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCATIWLAGFFFALPEILFAKV 192
Query: 625 RE---GDGRYICDRFYPN----DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHS- 780
E D C N + W +F + + G +LP +V+ CY ++ +L +
Sbjct: 193 SEPHYNDSLPHCTFSQENQAETNAWF-TSRFLYHIGGFLLPMLVMAWCYVGVVHRLCQAQ 251
Query: 781 KGYQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEA 960
+ Q++KA++ +++ FF CW PY + I +D+ L+++ CE + + I+++E
Sbjct: 252 RRPQRQKAVRVAILVTSVFFLCWSPYQVVIFLDTLARLKMLGSSCELDGYLSMAITMSEF 311
Query: 961 LAFFHCCLNPILYAFLGAKFKTSAQHALTSV 1053
L HCCLNP+LY F G KF++ LT +
Sbjct: 312 LGLAHCCLNPMLYTFAGVKFRSYLSRLLTKL 342
>ref|NP_001015581.1| chemokine-binding protein 2 [Bos taurus].
Length = 384
Score = 202 bits (513), Expect = 5e-52
Identities = 109/304 (35%), Positives = 170/304 (55%), Gaps = 3/304 (0%)
Frame = +1
Query: 157 DSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLS 336
D I C ++E F R+FLP YS+IF+ G+VGN L++ V+ R MT+ Y L+L+
Sbjct: 32 DMIFMLCRKDEVLSFGRVFLPVFYSLIFVLGLVGNLLLLAVLLRFVPRRRMTETYLLNLA 91
Query: 337 VADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHA 516
+++LLFV+TLPFW + +W FG LCK V +YTVN YS + ++ +SLD+YL IV A
Sbjct: 92 ISNLLFVVTLPFWGISVAWHWVFGSVLCKVVSTLYTVNFYSGIFFISCMSLDKYLEIVCA 151
Query: 517 TNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGD-GRYIC--DRFYPNDLWLVV 687
R R ++ VW AL ++IPD +F E G + C D +W +
Sbjct: 152 RPYHRLRTRAKSLLLAASVWAMALAVSIPDMVFVRTHENSPGVWECYADFGGHGTIWKLF 211
Query: 688 FQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIG 867
+FQ ++G +LP + ++ Y I S L + +R+AL+ V L++AFF W PY +
Sbjct: 212 LRFQQNLLGFLLPLLAMIFFYSRIGSVLVSLRPPGQRRALRMAVALVVAFFVLWFPYNLT 271
Query: 868 ISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALT 1047
+ + S + L++ C + + +TE++AF HCC P+LYAF +F+ + L
Sbjct: 272 LFLHSLLDLQVFGD-CRVSQHLDYALQVTESIAFLHCCFTPVLYAFSSHRFRQYLKAFLA 330
Query: 1048 SVSR 1059
+V R
Sbjct: 331 TVLR 334
>ref|NP_001181890.1| C-C chemokine receptor type 6 [Bos taurus].
Length = 370
Score = 199 bits (506), Expect = 4e-51
Identities = 111/318 (34%), Positives = 178/318 (55%), Gaps = 7/318 (2%)
Frame = +1
Query: 94 DGFRIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVI 273
D F + S +Y DD DS C +E F+ +F+P YS+I + G++GN LV+
Sbjct: 12 DYFGLANSSDYLLDD------DSFL--CSLQEVRSFSGLFVPVAYSLICVCGLLGNILVV 63
Query: 274 LVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVD-AVANWYFGKFLCKAVHVIYTVN 450
+ + KK +SMTD Y L+++VAD+LFVLTLPFWAV+ A W F +CK IY +N
Sbjct: 64 VTFAFYKKAKSMTDVYLLNMAVADILFVLTLPFWAVNHATGEWIFSNAMCKLTRGIYAIN 123
Query: 451 LYSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV 624
+L+L ISLDRY+AIV AT S R R L K++ + VW ++L++ F F
Sbjct: 124 FNCGMLLLTCISLDRYIAIVQATKSFRLRSRTLAHHKLICLAVWAVSILISSSTFTFNQK 183
Query: 625 REGDGRYICDRFY----PNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQ 792
+ G +C+ Y W ++ ++ G +P + ++ CY I+ L ++ +
Sbjct: 184 YKLQGGNVCEPRYHAVSEPIRWKLLMLGLQLLFGFFIPLVFMIFCYAFIVKTLVQAQNSK 243
Query: 793 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFF 972
+ +A++ + ++L F AC +P+ + + + + + L + C E + ++TE LAF
Sbjct: 244 RHRAIRVIIAVVLVFLACQIPHNMVLLVTA-VNLGRTGRSCGSEKLLGYAKNVTEVLAFL 302
Query: 973 HCCLNPILYAFLGAKFKT 1026
HCCLNP LYAF+G KF++
Sbjct: 303 HCCLNPALYAFIGQKFRS 320
>ref|NP_001098508.1| interleukin 8 receptor alpha [Bos taurus].
Length = 360
Score = 197 bits (502), Expect = 1e-50
Identities = 102/280 (36%), Positives = 162/280 (57%), Gaps = 6/280 (2%)
Frame = +1
Query: 202 NRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAV 381
N+ + +Y+++FL ++GN LV+LV+ Y + RS+TD Y L+L++ADLLF +TLP WA
Sbjct: 47 NKYAVVVIYALVFLLSLLGNSLVMLVILYSRIGRSVTDVYLLNLAMADLLFAMTLPIWAA 106
Query: 382 DAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVV 561
W FG LCK ++ VN YS +L+LA IS+DRYLAIVHAT + ++ K +
Sbjct: 107 SKAKGWIFGTPLCKVASLLKEVNFYSGILLLACISMDRYLAIVHATRTLTQKRHWV-KFI 165
Query: 562 YVGVWIPALLLTIPDFIFANVREGDGRYICDRFYPNDL------WLVVFQFQHIMVGLIL 723
+G+W +++L +P FIF RE D DL W ++ + G +L
Sbjct: 166 CLGIWALSVILALPIFIF---REAYQPPYSDLVCYEDLGANTTKWRMIMRVLPQTFGFLL 222
Query: 724 PGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEII 903
P +V+L CY + L ++ QK +A++ ++L F CWLPY + + D+ + +I
Sbjct: 223 PLLVMLFCYGFTLRTLFSAQMGQKHRAMRVIFAVVLVFLLCWLPYNLVLIADTLMRAHVI 282
Query: 904 QQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
+ C+ + + + + TE L F H CLNP++Y F+G KF+
Sbjct: 283 AETCQRRNDIGRALDATEILGFLHSCLNPLIYVFIGQKFR 322
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,335,819
Number of extensions: 1196869
Number of successful extensions: 5611
Number of sequences better than 1.0e-05: 325
Number of HSP's gapped: 4838
Number of HSP's successfully gapped: 331
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013201
(1081 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998938.1| C-X-C chemokine receptor type 4 [Sus scrofa]. 669 0.0
Alignment gi|XP_003360406.1| PREDICTED: c-X-C chemokine receptor type 3-l... 230 9e-61
Alignment gi|XP_003135227.1| PREDICTED: c-X-C chemokine receptor type 3-l... 230 9e-61
Alignment gi|XP_003361840.1| PREDICTED: c-C chemokine receptor type 4 iso... 229 2e-60
Alignment gi|XP_003361839.1| PREDICTED: c-C chemokine receptor type 4 iso... 229 2e-60
Alignment gi|NP_001001532.1| C-C chemokine receptor type 7 [Sus scrofa]. 216 2e-56
Alignment gi|NP_001001624.1| C-C chemokine receptor type 9 [Sus scrofa]. 214 9e-56
Alignment gi|XP_003133699.2| PREDICTED: c-X-C chemokine receptor type 2 i... 210 1e-54
Alignment gi|XP_003129963.1| PREDICTED: c-X-C chemokine receptor type 5-l... 206 2e-53
Alignment gi|XP_003133703.2| PREDICTED: c-X-C chemokine receptor type 2-l... 204 5e-53
>ref|NP_998938.1| C-X-C chemokine receptor type 4 [Sus scrofa].
Length = 353
Score = 669 bits (1725), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Frame = +1
Query: 91 MDGFRIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV 270
MDGFRIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV
Sbjct: 1 MDGFRIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV 60
Query: 271 ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN 450
ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN
Sbjct: 61 ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN 120
Query: 451 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE 630
LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE
Sbjct: 121 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE 180
Query: 631 GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 810
GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK
Sbjct: 181 GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 240
Query: 811 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 990
TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP
Sbjct: 241 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 300
Query: 991 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 1080
ILYAFLGAKFKTSAQHALTSVSRGSSLKIL
Sbjct: 301 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 330
>ref|XP_003360406.1| PREDICTED: c-X-C chemokine receptor type 3-like [Sus scrofa].
Length = 361
Score = 230 bits (587), Expect = 9e-61
Identities = 117/300 (39%), Positives = 178/300 (59%), Gaps = 4/300 (1%)
Frame = +1
Query: 136 DLGSGDYDSI--KEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSM 309
D G + DS PC ++ + F+R FLP +YS++F+ G++GNG V+ V+ Q+ + S
Sbjct: 26 DYGENESDSCCASPPCPQDFSLSFDRAFLPALYSLLFVLGLLGNGAVVAVLLSQRVVLSS 85
Query: 310 TDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISL 489
TD + LHL+VAD+L VLTLP WAVDA W FG LCK ++ +N Y+ L+LA IS
Sbjct: 86 TDTFLLHLAVADVLLVLTLPLWAVDAAIQWVFGSGLCKVAGALFNINFYAGALLLACISF 145
Query: 490 DRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIF--ANVREGDGRYICDRFY 663
DRYL+IVHAT R + + VW LL +PDFIF A+ E C +
Sbjct: 146 DRYLSIVHATQLYRRGPQARVTLTCMAVWGLCLLFALPDFIFLSAHPDERLNATHCQYSF 205
Query: 664 PNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFA 843
P + + ++ G +LP +V+ CY I++ L S+G ++ +A++ V++++AF
Sbjct: 206 P-QVGRTALRVLQLVAGFLLPLLVMAYCYARILAVLLVSRGQRRLRAMRLVVVVVVAFAL 264
Query: 844 CWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
CW PY++ + +D+ + L + + C ES V S+T L + HCCLNP+LYAF+G KF+
Sbjct: 265 CWTPYHLVVLVDTLMYLGALARNCSQESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFR 324
>ref|XP_003135227.1| PREDICTED: c-X-C chemokine receptor type 3-like [Sus scrofa].
Length = 361
Score = 230 bits (587), Expect = 9e-61
Identities = 117/300 (39%), Positives = 178/300 (59%), Gaps = 4/300 (1%)
Frame = +1
Query: 136 DLGSGDYDSI--KEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSM 309
D G + DS PC ++ + F+R FLP +YS++F+ G++GNG V+ V+ Q+ + S
Sbjct: 26 DYGENESDSCCASPPCPQDFSLSFDRAFLPALYSLLFVLGLLGNGAVVAVLLSQRVVLSS 85
Query: 310 TDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISL 489
TD + LHL+VAD+L VLTLP WAVDA W FG LCK ++ +N Y+ L+LA IS
Sbjct: 86 TDTFLLHLAVADVLLVLTLPLWAVDAAIQWVFGSGLCKVAGALFNINFYAGALLLACISF 145
Query: 490 DRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIF--ANVREGDGRYICDRFY 663
DRYL+IVHAT R + + VW LL +PDFIF A+ E C +
Sbjct: 146 DRYLSIVHATQLYRRGPQARVTLTCMAVWGLCLLFALPDFIFLSAHPDERLNATHCQYSF 205
Query: 664 PNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFA 843
P + + ++ G +LP +V+ CY I++ L S+G ++ +A++ V++++AF
Sbjct: 206 P-QVGRTALRVLQLVAGFLLPLLVMAYCYARILAVLLVSRGQRRLRAMRLVVVVVVAFAL 264
Query: 844 CWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
CW PY++ + +D+ + L + + C ES V S+T L + HCCLNP+LYAF+G KF+
Sbjct: 265 CWTPYHLVVLVDTLMYLGALARNCSQESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFR 324
>ref|XP_003361840.1| PREDICTED: c-C chemokine receptor type 4 isoform 2 [Sus scrofa].
Length = 360
Score = 229 bits (584), Expect = 2e-60
Identities = 115/292 (39%), Positives = 173/292 (59%), Gaps = 2/292 (0%)
Frame = +1
Query: 154 YDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 333
++SI +PC +E F +FLP +YS++FL G+ GN +V+LV+ K+L+SMTD Y L+L
Sbjct: 22 FESIPKPCTKEGIKAFGGLFLPPLYSLVFLFGLFGNSVVVLVLFKYKRLKSMTDVYLLNL 81
Query: 334 SVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVH 513
+++DLLFVL+LPFW A W FG LCK V +Y V YS + + +S+DRYLAIVH
Sbjct: 82 AISDLLFVLSLPFWGYYAADQWVFGLGLCKLVSWMYLVGFYSGIFFIMLMSIDRYLAIVH 141
Query: 514 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYP--NDLWLVV 687
A S R R L + + W A+ ++P +F+ C Y + W V+
Sbjct: 142 AVFSLRARTLTYGVITSLATWSVAVFASLPGLLFSTCYTERNHTYCKTKYSFNSTRWKVL 201
Query: 688 FQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIG 867
+ ++GL++P ++L CY +II L H K +K KA+K +++ F W PY +
Sbjct: 202 SSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKAVKMIFAVVVLFLGFWTPYNVV 261
Query: 868 ISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
+ +++ + LE++Q C FE + I TE LAF HCCLNP++Y FLG KF+
Sbjct: 262 LFLETLVELEVLQD-CTFERHLDYAIQATETLAFVHCCLNPVIYFFLGEKFR 312
>ref|XP_003361839.1| PREDICTED: c-C chemokine receptor type 4 isoform 1 [Sus scrofa].
Length = 387
Score = 229 bits (584), Expect = 2e-60
Identities = 115/292 (39%), Positives = 173/292 (59%), Gaps = 2/292 (0%)
Frame = +1
Query: 154 YDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 333
++SI +PC +E F +FLP +YS++FL G+ GN +V+LV+ K+L+SMTD Y L+L
Sbjct: 49 FESIPKPCTKEGIKAFGGLFLPPLYSLVFLFGLFGNSVVVLVLFKYKRLKSMTDVYLLNL 108
Query: 334 SVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVH 513
+++DLLFVL+LPFW A W FG LCK V +Y V YS + + +S+DRYLAIVH
Sbjct: 109 AISDLLFVLSLPFWGYYAADQWVFGLGLCKLVSWMYLVGFYSGIFFIMLMSIDRYLAIVH 168
Query: 514 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYP--NDLWLVV 687
A S R R L + + W A+ ++P +F+ C Y + W V+
Sbjct: 169 AVFSLRARTLTYGVITSLATWSVAVFASLPGLLFSTCYTERNHTYCKTKYSFNSTRWKVL 228
Query: 688 FQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIG 867
+ ++GL++P ++L CY +II L H K +K KA+K +++ F W PY +
Sbjct: 229 SSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKAVKMIFAVVVLFLGFWTPYNVV 288
Query: 868 ISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
+ +++ + LE++Q C FE + I TE LAF HCCLNP++Y FLG KF+
Sbjct: 289 LFLETLVELEVLQD-CTFERHLDYAIQATETLAFVHCCLNPVIYFFLGEKFR 339
>ref|NP_001001532.1| C-C chemokine receptor type 7 [Sus scrofa].
Length = 380
Score = 216 bits (549), Expect = 2e-56
Identities = 113/312 (36%), Positives = 184/312 (58%), Gaps = 9/312 (2%)
Frame = +1
Query: 118 DNYTEDDLGSG---DYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGY 288
D T+D +G DY + CF+++ F FLP +YSII G++GNGLV+L Y
Sbjct: 27 DEVTDDYIGDNTTVDYTLYESVCFKKDVRTFKAWFLPVMYSIICFVGLLGNGLVMLTYIY 86
Query: 289 QKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVL 468
K+L++MTD Y L+L+VAD+LF+LTLPFWA A +W FG +CK + IY ++ +S +L
Sbjct: 87 FKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHVCKLIFGIYKISFFSGML 146
Query: 469 ILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGR 642
+L IS+DRY+AIV A ++ R R LL K+ VG+W+ A++L+ P+ +++ ++
Sbjct: 147 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLAMVLSTPELLYSGTQKSSSE 206
Query: 643 YI--CDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTT 816
C + L+ Q ++VG ++P + + CY +II L ++ +++ KA+K
Sbjct: 207 QALRCSLITEHVEALITIQVAQMVVGFLIPLVAMSFCYLVIIRTLLQARNFERNKAIKVI 266
Query: 817 VILILAFFACWLPYYIGISIDSFILLEIIQQG--CEFESTVHKWISITEALAFFHCCLNP 990
+ +++ F A LPY G+ + + I G CE ++ +T +LA CC+NP
Sbjct: 267 IAVVVVFVAFQLPYN-GVVLAQTVANFNITSGTSCELSKQLNIAYDVTYSLACVRCCVNP 325
Query: 991 ILYAFLGAKFKT 1026
LYAF+G KF++
Sbjct: 326 FLYAFIGVKFRS 337
>ref|NP_001001624.1| C-C chemokine receptor type 9 [Sus scrofa].
Length = 369
Score = 214 bits (544), Expect = 9e-56
Identities = 110/289 (38%), Positives = 168/289 (58%), Gaps = 6/289 (2%)
Frame = +1
Query: 175 CFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF 354
C + F FLP +Y ++F+ G VGN LVILV Y ++++MTD + L+L++ADLLF
Sbjct: 38 CKKNHVRQFASHFLPPLYWLVFIVGAVGNSLVILVYWYCTRVKTMTDMFLLNLAIADLLF 97
Query: 355 VLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQ-- 528
++TLPFWA+ A W F F+CK V+ +Y +N YS VL++ IS+DRY+AI A +Q
Sbjct: 98 LVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYSCVLLIMCISVDRYIAIAQAMRAQTW 157
Query: 529 RPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYPND----LWLVVFQF 696
R ++LL K+V VW+ A L IP+ +++ V+E IC YP+D L V
Sbjct: 158 RQKRLLYSKLVCFTVWVMAAALCIPELLYSQVKEEHDIAICTMVYPSDESTNLKSAVLTL 217
Query: 697 QHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIGISI 876
+ +++G LP +V+ CY III L +K K KALK T+ ++ F PY + +
Sbjct: 218 K-VILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKALKVTITVLTVFVLSQFPYNCVLLV 276
Query: 877 DSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
+ + C + + +T+ +AFFH CLNP+LY F+G +F+
Sbjct: 277 QTIDAYTMFISSCAVSTNIDICFQVTQTIAFFHSCLNPVLYVFVGERFR 325
>ref|XP_003133699.2| PREDICTED: c-X-C chemokine receptor type 2 isoform 2 [Sus scrofa].
Length = 355
Score = 210 bits (534), Expect = 1e-54
Identities = 121/328 (36%), Positives = 180/328 (54%), Gaps = 14/328 (4%)
Frame = +1
Query: 109 FTSDNYTEDDLG---SGDYDSI---KEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV 270
F +NY DD S D I PC R E+ N+ + +Y+++FL ++GN LV
Sbjct: 4 FNFENYEGDDYNYSYSTDLPLILPDSAPC-RPESLDINKYAVVVIYALVFLLSLLGNSLV 62
Query: 271 ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN 450
+LV+ Y + RS+TD Y L+L++ADLLF LTLP WA W FG LCK V ++ VN
Sbjct: 63 MLVILYSRVGRSVTDVYLLNLAMADLLFALTLPIWATSKAKGWIFGTPLCKVVSLLKEVN 122
Query: 451 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFAN-VR 627
YS +L+LA IS+DRYLAIVHAT + ++ K + +G+W +L+L +P FIF +
Sbjct: 123 FYSGILLLACISMDRYLAIVHATRTLTQKRHWV-KFICIGIWALSLVLALPIFIFRRAIH 181
Query: 628 EGDGRYIC--DRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRK 801
+C D W +V + G +LP +V+L CY + + L + QK +
Sbjct: 182 PPYSSPVCYEDMGANTTKWRMVMRVLPQTFGFLLPLLVMLFCYGLTLRTLFAAHMGQKHR 241
Query: 802 ALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCC 981
A++ ++L F CWLPY + + D+ + +I + CE + + + + TE L F H C
Sbjct: 242 AMRVIFAVVLVFLLCWLPYNLVLVADTLMRARVIAETCERRNDIGRALDATEILGFLHSC 301
Query: 982 LNPILYAFLGAKF-----KTSAQHALTS 1050
LNP++Y F+G KF K A H L S
Sbjct: 302 LNPLIYVFIGQKFRHGLLKIMAIHGLIS 329
>ref|XP_003129963.1| PREDICTED: c-X-C chemokine receptor type 5-like [Sus scrofa].
Length = 373
Score = 206 bits (524), Expect = 2e-53
Identities = 104/293 (35%), Positives = 168/293 (57%), Gaps = 8/293 (2%)
Frame = +1
Query: 199 FNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWA 378
F +F+P Y +IFL G++GN LV++++ ++ RS T+ + HL+VADLL V LPF
Sbjct: 50 FKAVFMPVAYGLIFLLGMLGNILVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAV 109
Query: 379 VDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKV 558
+ W G FLCK V ++ +N Y S L+LA I++DRYLAIVHA ++ R R+LL+ +
Sbjct: 110 AEGSVGWVLGNFLCKTVIALHKINFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHI 169
Query: 559 VYVGVWIPALLLTIPDFIFANVRE---GDGRYICDRFYPN----DLWLVVFQFQHIMVGL 717
+W+ T+P+ +FA V + D + C N + W +F + + G
Sbjct: 170 TCATIWLAGFFFTLPEILFAKVSQPFHNDSQPRCTFSQENQAETNAWF-TSRFLYHIGGF 228
Query: 718 ILPGIVILSCYCIIISKLSHS-KGYQKRKALKTTVILILAFFACWLPYYIGISIDSFILL 894
+LP +V+ CY ++ +L + + Q++KA++ +++ FF CW PY+I I +D+ L
Sbjct: 229 LLPMLVMSWCYVGVVHRLCQAQRRPQRQKAVRVAILVTSVFFLCWSPYHIVIFLDTLARL 288
Query: 895 EIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSV 1053
+ + CE + I+I+E L HCCLNP+LY F G KF++ LT +
Sbjct: 289 KALGNSCELNGYLSVAITISEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKL 341
>ref|XP_003133703.2| PREDICTED: c-X-C chemokine receptor type 2-like [Sus scrofa].
Length = 366
Score = 204 bits (520), Expect = 5e-53
Identities = 119/327 (36%), Positives = 176/327 (53%), Gaps = 8/327 (2%)
Frame = +1
Query: 94 DGFRIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVI 273
D F FT T++ S PC R + N+ + +Y+++FL ++GN LV+
Sbjct: 26 DDFENFTGTPPTDEHYYS--------PC-RIDTESLNKYAVVVIYALVFLLSLLGNSLVM 76
Query: 274 LVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNL 453
LV+ Y + RS+TD Y L+L++ADLLF LTLP WA W FG LCK V ++ VN
Sbjct: 77 LVILYSRVGRSVTDVYLLNLAMADLLFALTLPIWATSKAKGWIFGTPLCKVVSLLKEVNF 136
Query: 454 YSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREG 633
YS +L+LA IS+DRYLAIVHAT S ++ K + G+W +L+L +P FIF
Sbjct: 137 YSGILLLACISVDRYLAIVHATRSLTQKRHWV-KFICTGIWALSLVLALPIFIFREAYHP 195
Query: 634 D-GRYIC--DRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKA 804
+C D W +V + G +LP +V+L CY + + L + QK +A
Sbjct: 196 PYSSPVCYEDLGANTTKWRMVMRVLPQTFGFLLPLLVMLFCYGLTLRTLFAAHMGQKHRA 255
Query: 805 LKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCL 984
++ ++L F CWLPY + + D+ + +I + CE + + + + TE L F H CL
Sbjct: 256 MRVIFAVVLVFLLCWLPYNLVLVADTLMRARVIAETCERRNDIGRALDATEILGFLHSCL 315
Query: 985 NPILYAFLGAKF-----KTSAQHALTS 1050
NP++Y F+G KF K A H L S
Sbjct: 316 NPLIYVFIGQKFRHGLLKIMAIHGLIS 342
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,257,304
Number of extensions: 768400
Number of successful extensions: 3508
Number of sequences better than 1.0e-05: 213
Number of HSP's gapped: 3003
Number of HSP's successfully gapped: 214
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013201
(1081 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034041.2| C-X-C chemokine receptor type 4 [Mus musculus]. 595 e-170
Alignment gi|NP_034040.1| C-X-C chemokine receptor type 3 [Mus musculus]. 225 4e-59
Alignment gi|NP_034046.2| C-C chemokine receptor type 4 [Mus musculus]. 224 7e-59
Alignment gi|NP_031745.2| C-C chemokine receptor type 7 precursor [Mus mu... 221 1e-57
Alignment gi|NP_001177267.1| C-C chemokine receptor type 6 isoform B [Mus... 215 5e-56
Alignment gi|NP_001177266.1| C-C chemokine receptor type 6 isoform A [Mus... 213 2e-55
Alignment gi|NP_001177265.1| C-C chemokine receptor type 6 isoform A [Mus... 213 2e-55
Alignment gi|NP_001177264.1| C-C chemokine receptor type 6 isoform A [Mus... 213 2e-55
Alignment gi|NP_001177263.1| C-C chemokine receptor type 6 isoform A [Mus... 213 2e-55
Alignment gi|NP_001177262.1| C-C chemokine receptor type 6 isoform A [Mus... 213 2e-55
>ref|NP_034041.2| C-X-C chemokine receptor type 4 [Mus musculus].
Length = 359
Score = 595 bits (1533), Expect = e-170
Identities = 291/330 (88%), Positives = 313/330 (94%), Gaps = 5/330 (1%)
Frame = +1
Query: 106 IFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMG 285
I+TSDNY+E+ +GSGDYDS KEPCFR+EN HFNRIFLPT+Y IIFLTGIVGNGLVILVMG
Sbjct: 8 IYTSDNYSEE-VGSGDYDSNKEPCFRDENVHFNRIFLPTIYFIIFLTGIVGNGLVILVMG 66
Query: 286 YQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSV 465
YQKKLRSMTDKYRLHLSVADLLFV+TLPFWAVDA+A+WYFGKFLCKAVH+IYTVNLYSSV
Sbjct: 67 YQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAMADWYFGKFLCKAVHIIYTVNLYSSV 126
Query: 466 LILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV-----RE 630
LILAFISLDRYLAIVHATNSQRPRKLLAEK VYVGVWIPALLLTIPDFIFA+V +
Sbjct: 127 LILAFISLDRYLAIVHATNSQRPRKLLAEKAVYVGVWIPALLLTIPDFIFADVSQGDISQ 186
Query: 631 GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 810
GD RYICDR YP+ LW+VVFQFQHIMVGL+LPGIVILSCYCIIISKLSHSKG+QKRKALK
Sbjct: 187 GDDRYICDRLYPDSLWMVVFQFQHIMVGLVLPGIVILSCYCIIISKLSHSKGHQKRKALK 246
Query: 811 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 990
TTVILILAFFACWLPYY+GISIDSFILL +I+QGC+FES VHKWISITEALAFFHCCLNP
Sbjct: 247 TTVILILAFFACWLPYYVGISIDSFILLGVIKQGCDFESIVHKWISITEALAFFHCCLNP 306
Query: 991 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 1080
ILYAFLGAKFK+SAQHAL S+SRGSSLKIL
Sbjct: 307 ILYAFLGAKFKSSAQHALNSMSRGSSLKIL 336
>ref|NP_034040.1| C-X-C chemokine receptor type 3 [Mus musculus].
Length = 367
Score = 225 bits (574), Expect = 4e-59
Identities = 119/321 (37%), Positives = 183/321 (57%), Gaps = 4/321 (1%)
Frame = +1
Query: 109 FTSDNYTED-DLGSGDYD-SIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVM 282
F +N T D G + D S PC ++ + +F+R FLP +YS++FL G++GNG V V+
Sbjct: 18 FLLENSTSPYDYGENESDFSDSPPCPQDFSLNFDRTFLPALYSLLFLLGLLGNGAVAAVL 77
Query: 283 GYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSS 462
Q+ S TD + LHL+VAD+L VLTLP WAVDA W FG LCK ++ +N Y+
Sbjct: 78 LSQRTALSSTDTFLLHLAVADVLLVLTLPLWAVDAAVQWVFGPGLCKVAGALFNINFYAG 137
Query: 463 VLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIF--ANVREGD 636
+LA IS DRYL+IVHAT R + + + VW LL +PDFI+ AN +
Sbjct: 138 AFLLACISFDRYLSIVHATQIYRRDPRVRVALTCIVVWGLCLLFALPDFIYLSANYDQRL 197
Query: 637 GRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTT 816
C +P + + ++ G +LP +V+ CY I++ L S+G ++ +A++
Sbjct: 198 NATHCQYNFP-QVGRTALRVLQLVAGFLLPLLVMAYCYAHILAVLLVSRGQRRFRAMRLV 256
Query: 817 VILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPIL 996
V+++ AF CW PY++ + +D + + ++ + C ES V S+T + + HCCLNP+L
Sbjct: 257 VVVVAAFAVCWTPYHLVVLVDILMDVGVLARNCGRESHVDVAKSVTSGMGYMHCCLNPLL 316
Query: 997 YAFLGAKFKTSAQHALTSVSR 1059
YAF+G KF+ T + R
Sbjct: 317 YAFVGVKFREQMWMLFTRLGR 337
>ref|NP_034046.2| C-C chemokine receptor type 4 [Mus musculus].
Length = 360
Score = 224 bits (572), Expect = 7e-59
Identities = 111/292 (38%), Positives = 172/292 (58%), Gaps = 2/292 (0%)
Frame = +1
Query: 154 YDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 333
Y+S+ +PC +E F +FLP +YS++FL G+ GN +V+LV+ K+L+SMTD Y L+L
Sbjct: 22 YESMPKPCTKEGIKAFGEVFLPPLYSLVFLLGLFGNSVVVLVLFKYKRLKSMTDVYLLNL 81
Query: 334 SVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVH 513
+++DLLFVL+LPFW A W FG LCK V +Y V YS + + +S+DRYLAIVH
Sbjct: 82 AISDLLFVLSLPFWGYYAADQWVFGLGLCKIVSWMYLVGFYSGIFFIMLMSIDRYLAIVH 141
Query: 514 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYP--NDLWLVV 687
A S + R L + + W A+ ++P +F+ C Y + W V+
Sbjct: 142 AVFSLKARTLTYGVITSLITWSVAVFASLPGLLFSTCYTEHNHTYCKTQYSVNSTTWKVL 201
Query: 688 FQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIG 867
+ ++GL++P ++L CY +II L H K +K +A++ +++ F W PY +
Sbjct: 202 SSLEINVLGLLIPLGIMLFCYSMIIRTLQHCKNEKKNRAVRMIFAVVVLFLGFWTPYNVV 261
Query: 868 ISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
+ +++ + LE++Q C E + I TE LAF HCCLNP++Y FLG KF+
Sbjct: 262 LFLETLVELEVLQD-CTLERYLDYAIQATETLAFIHCCLNPVIYFFLGEKFR 312
>ref|NP_031745.2| C-C chemokine receptor type 7 precursor [Mus musculus].
Length = 378
Score = 221 bits (562), Expect = 1e-57
Identities = 113/313 (36%), Positives = 182/313 (58%), Gaps = 7/313 (2%)
Frame = +1
Query: 109 FTSDNYTEDDLGSG---DYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILV 279
F D T+D +G DY + CF+++ +F FLP +YS+I G++GNGLVIL
Sbjct: 23 FCQDEVTDDYIGENTTVDYTLYESVCFKKDVRNFKAWFLPLMYSVICFVGLLGNGLVILT 82
Query: 280 MGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYS 459
Y K+L++MTD Y L+L+VAD+LF+L LPFWA +W FG +LCK + IY ++ +S
Sbjct: 83 YIYFKRLKTMTDTYLLNLAVADILFLLILPFWAYSEAKSWIFGVYLCKGIFGIYKLSFFS 142
Query: 460 SVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE- 630
+L+L IS+DRY+AIV A ++ R R LL K+ VG+W+ AL L+IP+ +++ +++
Sbjct: 143 GMLLLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWMLALFLSIPELLYSGLQKN 202
Query: 631 -GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKAL 807
G+ C L+ Q ++ G ++P + + CY III L ++ +++ KA+
Sbjct: 203 SGEDTLRCSLVSAQVEALITIQVAQMVFGFLVPMLAMSFCYLIIIRTLLQARNFERNKAI 262
Query: 808 KTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLN 987
K + +++ F LPY + + I CE ++ +T +LA CC+N
Sbjct: 263 KVIIAVVVVFIVFQLPYNGVVLAQTVANFNITNSSCETSKQLNIAYDVTYSLASVRCCVN 322
Query: 988 PILYAFLGAKFKT 1026
P LYAF+G KF++
Sbjct: 323 PFLYAFIGVKFRS 335
>ref|NP_001177267.1| C-C chemokine receptor type 6 isoform B [Mus musculus].
Length = 408
Score = 215 bits (547), Expect = 5e-56
Identities = 116/321 (36%), Positives = 181/321 (56%), Gaps = 15/321 (4%)
Frame = +1
Query: 106 IFTSDNYTEDDLGSGDYDSIKE--------PCFREENAHFNRIFLPTVYSIIFLTGIVGN 261
IF N TE G+ DYD+ + PC EE +F ++F+P YS+I + G++GN
Sbjct: 38 IFWGMNSTESYFGTDDYDNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGN 97
Query: 262 GLVILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVAN-WYFGKFLCKAVHVI 438
+V++ + KK RSMTD Y L++++ D+LFVLTLPFWAV N W F LCK +
Sbjct: 98 IMVVMTFAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGT 157
Query: 439 YTVNLYSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFI 612
Y VN +L+LA IS+DRY+AIV AT S R R L KV+ V VW +++++ P FI
Sbjct: 158 YAVNFNCGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFI 217
Query: 613 FANVREGDGRYICDRFYPN----DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHS 780
F E R +C+ Y + W ++ + G P + ++ CY II L +
Sbjct: 218 FNKKYELQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQA 277
Query: 781 KGYQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEA 960
+ ++ +A++ + ++L F AC +P+ + + + + + + + C E + ++ E
Sbjct: 278 QNSKRHRAIRVVIAVVLVFLACQIPHNMVLLVTA-VNTGKVGRSCSTEKVLAYTRNVAEV 336
Query: 961 LAFFHCCLNPILYAFLGAKFK 1023
LAF HCCLNP+LYAF+G KF+
Sbjct: 337 LAFLHCCLNPVLYAFIGQKFR 357
>ref|NP_001177266.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (542), Expect = 2e-55
Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 15/316 (4%)
Frame = +1
Query: 121 NYTEDDLGSGDYDSIKE--------PCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVIL 276
N TE G+ DYD+ + PC EE +F ++F+P YS+I + G++GN +V++
Sbjct: 2 NSTESYFGTDDYDNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVM 61
Query: 277 VMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVAN-WYFGKFLCKAVHVIYTVNL 453
+ KK RSMTD Y L++++ D+LFVLTLPFWAV N W F LCK + Y VN
Sbjct: 62 TFAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNF 121
Query: 454 YSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVR 627
+L+LA IS+DRY+AIV AT S R R L KV+ V VW +++++ P FIF
Sbjct: 122 NCGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKY 181
Query: 628 EGDGRYICDRFYPN----DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQK 795
E R +C+ Y + W ++ + G P + ++ CY II L ++ ++
Sbjct: 182 ELQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKR 241
Query: 796 RKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFH 975
+A++ + ++L F AC +P+ + + + + + + + C E + ++ E LAF H
Sbjct: 242 HRAIRVVIAVVLVFLACQIPHNMVLLVTA-VNTGKVGRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 976 CCLNPILYAFLGAKFK 1023
CCLNP+LYAF+G KF+
Sbjct: 301 CCLNPVLYAFIGQKFR 316
>ref|NP_001177265.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (542), Expect = 2e-55
Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 15/316 (4%)
Frame = +1
Query: 121 NYTEDDLGSGDYDSIKE--------PCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVIL 276
N TE G+ DYD+ + PC EE +F ++F+P YS+I + G++GN +V++
Sbjct: 2 NSTESYFGTDDYDNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVM 61
Query: 277 VMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVAN-WYFGKFLCKAVHVIYTVNL 453
+ KK RSMTD Y L++++ D+LFVLTLPFWAV N W F LCK + Y VN
Sbjct: 62 TFAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNF 121
Query: 454 YSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVR 627
+L+LA IS+DRY+AIV AT S R R L KV+ V VW +++++ P FIF
Sbjct: 122 NCGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKY 181
Query: 628 EGDGRYICDRFYPN----DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQK 795
E R +C+ Y + W ++ + G P + ++ CY II L ++ ++
Sbjct: 182 ELQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKR 241
Query: 796 RKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFH 975
+A++ + ++L F AC +P+ + + + + + + + C E + ++ E LAF H
Sbjct: 242 HRAIRVVIAVVLVFLACQIPHNMVLLVTA-VNTGKVGRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 976 CCLNPILYAFLGAKFK 1023
CCLNP+LYAF+G KF+
Sbjct: 301 CCLNPVLYAFIGQKFR 316
>ref|NP_001177264.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (542), Expect = 2e-55
Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 15/316 (4%)
Frame = +1
Query: 121 NYTEDDLGSGDYDSIKE--------PCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVIL 276
N TE G+ DYD+ + PC EE +F ++F+P YS+I + G++GN +V++
Sbjct: 2 NSTESYFGTDDYDNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVM 61
Query: 277 VMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVAN-WYFGKFLCKAVHVIYTVNL 453
+ KK RSMTD Y L++++ D+LFVLTLPFWAV N W F LCK + Y VN
Sbjct: 62 TFAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNF 121
Query: 454 YSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVR 627
+L+LA IS+DRY+AIV AT S R R L KV+ V VW +++++ P FIF
Sbjct: 122 NCGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKY 181
Query: 628 EGDGRYICDRFYPN----DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQK 795
E R +C+ Y + W ++ + G P + ++ CY II L ++ ++
Sbjct: 182 ELQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKR 241
Query: 796 RKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFH 975
+A++ + ++L F AC +P+ + + + + + + + C E + ++ E LAF H
Sbjct: 242 HRAIRVVIAVVLVFLACQIPHNMVLLVTA-VNTGKVGRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 976 CCLNPILYAFLGAKFK 1023
CCLNP+LYAF+G KF+
Sbjct: 301 CCLNPVLYAFIGQKFR 316
>ref|NP_001177263.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (542), Expect = 2e-55
Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 15/316 (4%)
Frame = +1
Query: 121 NYTEDDLGSGDYDSIKE--------PCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVIL 276
N TE G+ DYD+ + PC EE +F ++F+P YS+I + G++GN +V++
Sbjct: 2 NSTESYFGTDDYDNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVM 61
Query: 277 VMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVAN-WYFGKFLCKAVHVIYTVNL 453
+ KK RSMTD Y L++++ D+LFVLTLPFWAV N W F LCK + Y VN
Sbjct: 62 TFAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNF 121
Query: 454 YSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVR 627
+L+LA IS+DRY+AIV AT S R R L KV+ V VW +++++ P FIF
Sbjct: 122 NCGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKY 181
Query: 628 EGDGRYICDRFYPN----DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQK 795
E R +C+ Y + W ++ + G P + ++ CY II L ++ ++
Sbjct: 182 ELQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKR 241
Query: 796 RKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFH 975
+A++ + ++L F AC +P+ + + + + + + + C E + ++ E LAF H
Sbjct: 242 HRAIRVVIAVVLVFLACQIPHNMVLLVTA-VNTGKVGRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 976 CCLNPILYAFLGAKFK 1023
CCLNP+LYAF+G KF+
Sbjct: 301 CCLNPVLYAFIGQKFR 316
>ref|NP_001177262.1| C-C chemokine receptor type 6 isoform A [Mus musculus].
Length = 367
Score = 213 bits (542), Expect = 2e-55
Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 15/316 (4%)
Frame = +1
Query: 121 NYTEDDLGSGDYDSIKE--------PCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVIL 276
N TE G+ DYD+ + PC EE +F ++F+P YS+I + G++GN +V++
Sbjct: 2 NSTESYFGTDDYDNTEYYSIPPDHGPCSLEEVRNFTKVFVPIAYSLICVFGLLGNIMVVM 61
Query: 277 VMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVAN-WYFGKFLCKAVHVIYTVNL 453
+ KK RSMTD Y L++++ D+LFVLTLPFWAV N W F LCK + Y VN
Sbjct: 62 TFAFYKKARSMTDVYLLNMAITDILFVLTLPFWAVTHATNTWVFSDALCKLMKGTYAVNF 121
Query: 454 YSSVLILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVR 627
+L+LA IS+DRY+AIV AT S R R L KV+ V VW +++++ P FIF
Sbjct: 122 NCGMLLLACISMDRYIAIVQATKSFRVRSRTLTHSKVICVAVWFISIIISSPTFIFNKKY 181
Query: 628 EGDGRYICDRFYPN----DLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQK 795
E R +C+ Y + W ++ + G P + ++ CY II L ++ ++
Sbjct: 182 ELQDRDVCEPRYRSVSEPITWKLLGMGLELFFGFFTPLLFMVFCYLFIIKTLVQAQNSKR 241
Query: 796 RKALKTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFH 975
+A++ + ++L F AC +P+ + + + + + + + C E + ++ E LAF H
Sbjct: 242 HRAIRVVIAVVLVFLACQIPHNMVLLVTA-VNTGKVGRSCSTEKVLAYTRNVAEVLAFLH 300
Query: 976 CCLNPILYAFLGAKFK 1023
CCLNP+LYAF+G KF+
Sbjct: 301 CCLNPVLYAFIGQKFR 316
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,950,188
Number of extensions: 1026418
Number of successful extensions: 4513
Number of sequences better than 1.0e-05: 278
Number of HSP's gapped: 3808
Number of HSP's successfully gapped: 279
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013201
(1081 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003458.1| C-X-C chemokine receptor type 4 isoform b [Homo... 631 0.0
Alignment gi|NP_001008540.1| C-X-C chemokine receptor type 4 isoform a [H... 627 e-180
Alignment gi|NP_005499.1| C-C chemokine receptor type 4 [Homo sapiens]. 233 2e-61
Alignment gi|NP_001136269.1| C-X-C chemokine receptor type 3 isoform 2 [H... 224 1e-58
Alignment gi|NP_001495.1| C-X-C chemokine receptor type 3 isoform 1 [Homo... 224 1e-58
Alignment gi|NP_001829.1| C-C chemokine receptor type 7 precursor [Homo s... 215 5e-56
Alignment gi|NP_000625.1| C-X-C chemokine receptor type 1 [Homo sapiens]. 215 6e-56
Alignment gi|NP_006632.2| C-C chemokine receptor type 9 isoform B [Homo s... 213 2e-55
Alignment gi|NP_112477.1| C-C chemokine receptor type 9 isoform A [Homo s... 213 2e-55
Alignment gi|NP_001161770.1| C-X-C chemokine receptor type 2 [Homo sapien... 212 5e-55
>ref|NP_003458.1| C-X-C chemokine receptor type 4 isoform b [Homo sapiens].
Length = 352
Score = 631 bits (1627), Expect = 0.0
Identities = 310/330 (93%), Positives = 323/330 (97%)
Frame = +1
Query: 91 MDGFRIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLV 270
M+G I+TSDNYTE+ +GSGDYDS+KEPCFREENA+FN+IFLPT+YSIIFLTGIVGNGLV
Sbjct: 1 MEGISIYTSDNYTEE-MGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLV 59
Query: 271 ILVMGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVN 450
ILVMGYQKKLRSMTDKYRLHLSVADLLFV+TLPFWAVDAVANWYFG FLCKAVHVIYTVN
Sbjct: 60 ILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVN 119
Query: 451 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVRE 630
LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV E
Sbjct: 120 LYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSE 179
Query: 631 GDGRYICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 810
D RYICDRFYPNDLW+VVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKG+QKRKALK
Sbjct: 180 ADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALK 239
Query: 811 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 990
TTVILILAFFACWLPYYIGISIDSFILLEII+QGCEFE+TVHKWISITEALAFFHCCLNP
Sbjct: 240 TTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNP 299
Query: 991 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 1080
ILYAFLGAKFKTSAQHALTSVSRGSSLKIL
Sbjct: 300 ILYAFLGAKFKTSAQHALTSVSRGSSLKIL 329
>ref|NP_001008540.1| C-X-C chemokine receptor type 4 isoform a [Homo sapiens].
Length = 356
Score = 627 bits (1616), Expect = e-180
Identities = 308/326 (94%), Positives = 321/326 (98%)
Frame = +1
Query: 103 RIFTSDNYTEDDLGSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVM 282
+I+TSDNYTE+ +GSGDYDS+KEPCFREENA+FN+IFLPT+YSIIFLTGIVGNGLVILVM
Sbjct: 9 QIYTSDNYTEE-MGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVM 67
Query: 283 GYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSS 462
GYQKKLRSMTDKYRLHLSVADLLFV+TLPFWAVDAVANWYFG FLCKAVHVIYTVNLYSS
Sbjct: 68 GYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSS 127
Query: 463 VLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGR 642
VLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV E D R
Sbjct: 128 VLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDR 187
Query: 643 YICDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVI 822
YICDRFYPNDLW+VVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKG+QKRKALKTTVI
Sbjct: 188 YICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALKTTVI 247
Query: 823 LILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYA 1002
LILAFFACWLPYYIGISIDSFILLEII+QGCEFE+TVHKWISITEALAFFHCCLNPILYA
Sbjct: 248 LILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYA 307
Query: 1003 FLGAKFKTSAQHALTSVSRGSSLKIL 1080
FLGAKFKTSAQHALTSVSRGSSLKIL
Sbjct: 308 FLGAKFKTSAQHALTSVSRGSSLKIL 333
>ref|NP_005499.1| C-C chemokine receptor type 4 [Homo sapiens].
Length = 360
Score = 233 bits (595), Expect = 2e-61
Identities = 117/292 (40%), Positives = 174/292 (59%), Gaps = 2/292 (0%)
Frame = +1
Query: 154 YDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 333
Y+SI +PC +E F +FLP +YS++F+ G++GN +V+LV+ K+LRSMTD Y L+L
Sbjct: 22 YESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVVVLVLFKYKRLRSMTDVYLLNL 81
Query: 334 SVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISLDRYLAIVH 513
+++DLLFV +LPFW A W FG LCK + +Y V YS + + +S+DRYLAIVH
Sbjct: 82 AISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLVGFYSGIFFVMLMSIDRYLAIVH 141
Query: 514 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGRYICDRFYP--NDLWLVV 687
A S R R L + + W A+ ++P F+F+ C Y + W V+
Sbjct: 142 AVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTCYTERNHTYCKTKYSLNSTTWKVL 201
Query: 688 FQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFACWLPYYIG 867
+ ++GL++P ++L CY +II L H K +K KA+K +++ F W PY I
Sbjct: 202 SSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKAVKMIFAVVVLFLGFWTPYNIV 261
Query: 868 ISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
+ +++ + LE++Q C FE + I TE LAF HCCLNPI+Y FLG KF+
Sbjct: 262 LFLETLVELEVLQD-CTFERYLDYAIQATETLAFVHCCLNPIIYFFLGEKFR 312
>ref|NP_001136269.1| C-X-C chemokine receptor type 3 isoform 2 [Homo sapiens].
Length = 415
Score = 224 bits (570), Expect = 1e-58
Identities = 115/300 (38%), Positives = 173/300 (57%), Gaps = 4/300 (1%)
Frame = +1
Query: 136 DLGSGDYDSI--KEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSM 309
D G + DS PC ++ + +F+R FLP +YS++FL G++GNG V V+ ++ S
Sbjct: 75 DYGENESDSCCTSPPCPQDFSLNFDRAFLPALYSLLFLLGLLGNGAVAAVLLSRRTALSS 134
Query: 310 TDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISL 489
TD + LHL+VAD L VLTLP WAVDA W FG LCK ++ +N Y+ L+LA IS
Sbjct: 135 TDTFLLHLAVADTLLVLTLPLWAVDAAVQWVFGSGLCKVAGALFNINFYAGALLLACISF 194
Query: 490 DRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGD--GRYICDRFY 663
DRYL IVHAT R + + VW LL +PDFIF + + C +
Sbjct: 195 DRYLNIVHATQLYRRGPPARVTLTCLAVWGLCLLFALPDFIFLSAHHDERLNATHCQYNF 254
Query: 664 PNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFA 843
P + + ++ G +LP +V+ CY I++ L S+G ++ +A++ V++++AF
Sbjct: 255 P-QVGRTALRVLQLVAGFLLPLLVMAYCYAHILAVLLVSRGQRRLRAMRLVVVVVVAFAL 313
Query: 844 CWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
CW PY++ + +D + L + + C ES V S+T L + HCCLNP+LYAF+G KF+
Sbjct: 314 CWTPYHLVVLVDILMDLGALARNCGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFR 373
>ref|NP_001495.1| C-X-C chemokine receptor type 3 isoform 1 [Homo sapiens].
Length = 368
Score = 224 bits (570), Expect = 1e-58
Identities = 115/300 (38%), Positives = 173/300 (57%), Gaps = 4/300 (1%)
Frame = +1
Query: 136 DLGSGDYDSI--KEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLRSM 309
D G + DS PC ++ + +F+R FLP +YS++FL G++GNG V V+ ++ S
Sbjct: 28 DYGENESDSCCTSPPCPQDFSLNFDRAFLPALYSLLFLLGLLGNGAVAAVLLSRRTALSS 87
Query: 310 TDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFISL 489
TD + LHL+VAD L VLTLP WAVDA W FG LCK ++ +N Y+ L+LA IS
Sbjct: 88 TDTFLLHLAVADTLLVLTLPLWAVDAAVQWVFGSGLCKVAGALFNINFYAGALLLACISF 147
Query: 490 DRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGD--GRYICDRFY 663
DRYL IVHAT R + + VW LL +PDFIF + + C +
Sbjct: 148 DRYLNIVHATQLYRRGPPARVTLTCLAVWGLCLLFALPDFIFLSAHHDERLNATHCQYNF 207
Query: 664 PNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILAFFA 843
P + + ++ G +LP +V+ CY I++ L S+G ++ +A++ V++++AF
Sbjct: 208 P-QVGRTALRVLQLVAGFLLPLLVMAYCYAHILAVLLVSRGQRRLRAMRLVVVVVVAFAL 266
Query: 844 CWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGAKFK 1023
CW PY++ + +D + L + + C ES V S+T L + HCCLNP+LYAF+G KF+
Sbjct: 267 CWTPYHLVVLVDILMDLGALARNCGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFR 326
>ref|NP_001829.1| C-C chemokine receptor type 7 precursor [Homo sapiens].
Length = 378
Score = 215 bits (548), Expect = 5e-56
Identities = 109/309 (35%), Positives = 178/309 (57%), Gaps = 7/309 (2%)
Frame = +1
Query: 118 DNYTEDDLGSG---DYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGY 288
D T+D +G DY + C +++ +F FLP +YSII G++GNGLV+L Y
Sbjct: 26 DEVTDDYIGDNTTVDYTLFESLCSKKDVRNFKAWFLPIMYSIICFVGLLGNGLVVLTYIY 85
Query: 289 QKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVL 468
K+L++MTD Y L+L+VAD+LF+LTLPFWA A +W FG CK + IY ++ +S +L
Sbjct: 86 FKRLKTMTDTYLLNLAVADILFLLTLPFWAYSAAKSWVFGVHFCKLIFAIYKMSFFSGML 145
Query: 469 ILAFISLDRYLAIVHATNS--QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDGR 642
+L IS+DRY+AIV A ++ R R LL K+ VG+WI A +L+IP+ ++++++
Sbjct: 146 LLLCISIDRYVAIVQAVSAHRHRARVLLISKLSCVGIWILATVLSIPELLYSDLQRSSSE 205
Query: 643 YI--CDRFYPNDLWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTT 816
C + + Q +++G ++P + + CY +II L ++ +++ KA+K
Sbjct: 206 QAMRCSLITEHVEAFITIQVAQMVIGFLVPLLAMSFCYLVIIRTLLQARNFERNKAIKVI 265
Query: 817 VILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPIL 996
+ +++ F LPY + + I CE ++ +T +LA CC+NP L
Sbjct: 266 IAVVVVFIVFQLPYNGVVLAQTVANFNITSSTCELSKQLNIAYDVTYSLACVRCCVNPFL 325
Query: 997 YAFLGAKFK 1023
YAF+G KF+
Sbjct: 326 YAFIGVKFR 334
>ref|NP_000625.1| C-X-C chemokine receptor type 1 [Homo sapiens].
Length = 350
Score = 215 bits (547), Expect = 6e-56
Identities = 122/317 (38%), Positives = 176/317 (55%), Gaps = 11/317 (3%)
Frame = +1
Query: 133 DDL---GSGDYDSIKEPCFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMGYQKKLR 303
DDL G D PC E N+ + Y+++FL ++GN LV+LV+ Y + R
Sbjct: 13 DDLNFTGMPPADEDYSPCMLETET-LNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGR 71
Query: 304 SMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSVLILAFI 483
S+TD Y L+L++ADLLF LTLP WA V W FG FLCK V ++ VN YS +L+LA I
Sbjct: 72 SVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACI 131
Query: 484 SLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV-REGDGRYICDRF 660
S+DRYLAIVHAT + ++ L K V +G W ++ L++P F+F + +C
Sbjct: 132 SVDRYLAIVHATRTLTQKRHLV-KFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEV 190
Query: 661 YPNDL--WLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALKTTVILILA 834
ND W +V + G I+P V+L CY + L + QK +A++ ++L
Sbjct: 191 LGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHMGQKHRAMRVIFAVVLI 250
Query: 835 FFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNPILYAFLGA 1014
F CWLPY + + D+ + ++IQ+ CE + + + + TE L F H CLNPI+YAF+G
Sbjct: 251 FLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQ 310
Query: 1015 KF-----KTSAQHALTS 1050
F K A H L S
Sbjct: 311 NFRHGFLKILAMHGLVS 327
>ref|NP_006632.2| C-C chemokine receptor type 9 isoform B [Homo sapiens].
Length = 357
Score = 213 bits (542), Expect = 2e-55
Identities = 112/312 (35%), Positives = 177/312 (56%), Gaps = 15/312 (4%)
Frame = +1
Query: 133 DDLGSGDYDSIKEP---------CFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMG 285
DD GS S+++ C + F FLP +Y ++F+ G +GN LVILV
Sbjct: 3 DDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGNSLVILVYW 62
Query: 286 YQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSV 465
Y ++++MTD + L+L++ADLLF++TLPFWA+ A W F F+CK V+ +Y +N YS V
Sbjct: 63 YCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYSCV 122
Query: 466 LILAFISLDRYLAIVHA--TNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDG 639
L++ IS+DRY+AI A ++ R ++LL K+V +W+ A L IP+ +++ ++E G
Sbjct: 123 LLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILYSQIKEESG 182
Query: 640 RYICDRFYPND----LWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKAL 807
IC YP+D L V + +++G LP +V+ CY III L +K K KAL
Sbjct: 183 IAICTMVYPSDESTKLKSAVLTLK-VILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKAL 241
Query: 808 KTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLN 987
K T+ ++ F PY + + + + C + + +T+ +AFFH CLN
Sbjct: 242 KVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQVTQTIAFFHSCLN 301
Query: 988 PILYAFLGAKFK 1023
P+LY F+G +F+
Sbjct: 302 PVLYVFVGERFR 313
>ref|NP_112477.1| C-C chemokine receptor type 9 isoform A [Homo sapiens].
Length = 369
Score = 213 bits (542), Expect = 2e-55
Identities = 112/312 (35%), Positives = 177/312 (56%), Gaps = 15/312 (4%)
Frame = +1
Query: 133 DDLGSGDYDSIKEP---------CFREENAHFNRIFLPTVYSIIFLTGIVGNGLVILVMG 285
DD GS S+++ C + F FLP +Y ++F+ G +GN LVILV
Sbjct: 15 DDYGSESTSSMEDYVNFNFTDFYCEKNNVRQFASHFLPPLYWLVFIVGALGNSLVILVYW 74
Query: 286 YQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYSSV 465
Y ++++MTD + L+L++ADLLF++TLPFWA+ A W F F+CK V+ +Y +N YS V
Sbjct: 75 YCTRVKTMTDMFLLNLAIADLLFLVTLPFWAIAAADQWKFQTFMCKVVNSMYKMNFYSCV 134
Query: 466 LILAFISLDRYLAIVHA--TNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVREGDG 639
L++ IS+DRY+AI A ++ R ++LL K+V +W+ A L IP+ +++ ++E G
Sbjct: 135 LLIMCISVDRYIAIAQAMRAHTWREKRLLYSKMVCFTIWVLAAALCIPEILYSQIKEESG 194
Query: 640 RYICDRFYPND----LWLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKAL 807
IC YP+D L V + +++G LP +V+ CY III L +K K KAL
Sbjct: 195 IAICTMVYPSDESTKLKSAVLTLK-VILGFFLPFVVMACCYTIIIHTLIQAKKSSKHKAL 253
Query: 808 KTTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLN 987
K T+ ++ F PY + + + + C + + +T+ +AFFH CLN
Sbjct: 254 KVTITVLTVFVLSQFPYNCILLVQTIDAYAMFISNCAVSTNIDICFQVTQTIAFFHSCLN 313
Query: 988 PILYAFLGAKFK 1023
P+LY F+G +F+
Sbjct: 314 PVLYVFVGERFR 325
>ref|NP_001161770.1| C-X-C chemokine receptor type 2 [Homo sapiens].
Length = 360
Score = 212 bits (539), Expect = 5e-55
Identities = 113/311 (36%), Positives = 178/311 (57%), Gaps = 9/311 (2%)
Frame = +1
Query: 118 DNYTEDDLGSGDYDSIKEPCFRE------ENAHFNRIFLPTVYSIIFLTGIVGNGLVILV 279
D + +DL + Y S P + E+ N+ F+ +Y+++FL ++GN LV+LV
Sbjct: 13 DFWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFLLSLLGNSLVMLV 72
Query: 280 MGYQKKLRSMTDKYRLHLSVADLLFVLTLPFWAVDAVANWYFGKFLCKAVHVIYTVNLYS 459
+ Y + RS+TD Y L+L++ADLLF LTLP WA V W FG FLCK V ++ VN YS
Sbjct: 73 ILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSLLKEVNFYS 132
Query: 460 SVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIF-ANVREGD 636
+L+LA IS+DRYLAIVHAT + ++ L K + + +W +LLL +P +F V +
Sbjct: 133 GILLLACISVDRYLAIVHATRTLTQKRYLV-KFICLSIWGLSLLLALPVLLFRRTVYSSN 191
Query: 637 GRYICDRFYPNDL--WLVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGYQKRKALK 810
C N+ W ++ + G I+P +++L CY + L + QK +A++
Sbjct: 192 VSPACYEDMGNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFKAHMGQKHRAMR 251
Query: 811 TTVILILAFFACWLPYYIGISIDSFILLEIIQQGCEFESTVHKWISITEALAFFHCCLNP 990
++L F CWLPY + + D+ + ++IQ+ CE + + + + TE L H CLNP
Sbjct: 252 VIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATEILGILHSCLNP 311
Query: 991 ILYAFLGAKFK 1023
++YAF+G KF+
Sbjct: 312 LIYAFIGQKFR 322
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,409,320
Number of extensions: 1214720
Number of successful extensions: 4812
Number of sequences better than 1.0e-05: 303
Number of HSP's gapped: 4057
Number of HSP's successfully gapped: 306
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013201
(1081 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1927 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 1927 bits (972), Expect = 0.0
Identities = 975/976 (99%)
Strand = Plus / Plus
Query: 106 atattcacttcagataattacacagaggatgacttgggctcaggtgactatgactccata 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127423 atattcacttcagataattacacagaggatgacttgggctcaggtgactatgactccata 18127482
Query: 166 aaggaaccctgtttccgggaggaaaatgcccatttcaaccgaatctttctgcccactgtc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127483 aaggaaccctgtttccgggaggaaaatgcccatttcaaccgaatctttctgcccactgtc 18127542
Query: 226 tactccatcatcttcttaactggcatagtgggtaatggattggtcatcctggtcatgggt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127543 tactccatcatcttcttaactggcatagtgggtaatggattggtcatcctggtcatgggt 18127602
Query: 286 taccagaagaaactgagaagcatgacggacaagtacagactgcacctgtctgtggcagac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127603 taccagaagaaactgagaagcatgacggacaagtacagactgcacctgtctgtggcagac 18127662
Query: 346 cttctctttgtcctcacacttcccttctgggcagttgatgccgtggcaaactggtacttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127663 cttctctttgtcctcacacttcccttctgggcagttgatgccgtggcaaactggtacttt 18127722
Query: 406 gggaagtttctgtgcaaggcagtccatgtcatctatactgtcaatctctacagcagtgtg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127723 gggaagtttctgtgcaaggcagtccatgtcatctatactgtcaatctctacagcagtgtg 18127782
Query: 466 ctcatcctggccttcatcagtctggaccggtacctggctatcgtccatgccaccaacagt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127783 ctcatcctggccttcatcagtctggaccggtacctggctatcgtccatgccaccaacagt 18127842
Query: 526 cagaggccaaggaagctattggctgaaaaagtggtctatgtcggcgtctggatacctgcc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127843 cagaggccaaggaagctattggctgaaaaagtggtctatgtcggcgtctggatacctgcc 18127902
Query: 586 ctcctgttgactattcctgatttcatctttgcgaatgtcagggagggggatgggaggtac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127903 ctcctgttgactattcctgatttcatctttgcgaatgtcagggagggggatgggaggtac 18127962
Query: 646 atctgtgaccgcttctaccccaatgacctgtggttagtggtgttccagtttcagcacatc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18127963 atctgtgaccgcttctaccccaatgacctgtggttagtggtgttccagtttcagcacatc 18128022
Query: 706 atggttggccttatcctgccgggtattgtcatcctatcttgctattgcatcatcatctcc 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18128023 atggttggccttatcctgccgggtattgtcatcctatcttgctattgcatcatcatctcc 18128082
Query: 766 aagctgtcccactccaagggctatcagaagcgcaaagctctcaaaaccaccgttatcctc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18128083 aagctgtcccactccaagggctatcagaagcgcaaagctctcaaaaccaccgttatcctc 18128142
Query: 826 atcctggctttcttcgcctgctggctgccatactacatcgggatcagcatcgactccttc 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18128143 atcctggctttcttcgcctgctggctgccatactacatcgggatcagcatcgactccttc 18128202
Query: 886 atcctcctggaaatcatccagcaagggtgtgagtttgagagcactgtgcacaagtggatt 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18128203 atcctcctggaaatcatccagcaagggtgtgagtttgagagcactgtgcacaagtggatt 18128262
Query: 946 tccatcactgaggcccttgcctttttccactgttgcctgaatcctatcctctacgctttc 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18128263 tccatcactgaggcccttgcctttttccactgttgcctgaatcctatcctctacgctttc 18128322
Query: 1006 cttggagccaaatttaaaacctctgcccagcacgcactcacctctgtgagcagagggtcc 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18128323 cttggagccaaatttaaaacctctgcccagcacgcactcacctctgtgagcagagggtcc 18128382
Query: 1066 agcctaaaaatcctct 1081
|||||||| |||||||
Sbjct: 18128383 agcctaaagatcctct 18128398
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 cagtctgttggctgcggcagcaggtagcaaagtgaccctgaggacttgagtgctccggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18125325 cagtctgttggctgcggcagcaggtagcaaagtgaccctgaggacttgagtgctccggta 18125384
Query: 61 gcccccgcggctggagagtgagcagttaccatggacgggttccgt 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18125385 gcccccgcggctggagagtgagcagttaccatggacgggttccgt 18125429
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,202,794
Number of extensions: 167
Number of successful extensions: 167
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 2
Length of query: 1081
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1060
Effective length of database: 2,808,413,156
Effective search space: 2976917945360
Effective search space used: 2976917945360
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)