Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013202
(2160 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068678.1| poliovirus receptor-related 2 [Bos taurus]. 546 e-155
Alignment gi|XP_605244.5| PREDICTED: poliovirus receptor-like [Bos taurus]. 328 2e-89
Alignment gi|XP_002695134.1| PREDICTED: poliovirus receptor-like [Bos tau... 325 1e-88
Alignment gi|NP_001192951.1| poliovirus receptor-related protein 1 [Bos t... 174 3e-43
Alignment gi|XP_002693074.1| PREDICTED: poliovirus receptor-related 1 (he... 174 3e-43
Alignment gi|XP_002684791.1| PREDICTED: poliovirus receptor-related 3-lik... 135 2e-31
Alignment gi|NP_001019665.1| poliovirus receptor-related protein 4 precur... 106 1e-22
Alignment gi|NP_001033647.1| cell adhesion molecule 1 [Bos taurus]. 78 4e-14
Alignment gi|XP_002684704.1| PREDICTED: cell adhesion molecule 2-like [Bo... 74 4e-13
Alignment gi|XP_595936.4| PREDICTED: cell adhesion molecule 2 [Bos taurus]. 74 4e-13
>ref|NP_001068678.1| poliovirus receptor-related 2 [Bos taurus].
Length = 403
Score = 546 bits (1408), Expect = e-155
Identities = 265/323 (82%), Positives = 287/323 (88%)
Frame = +3
Query: 279 RETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFH 458
RET AQDVRV+VAAEVRG+LGDTVELPCHLLP APE+RVSQVTWLRLD PE QNVAIFH
Sbjct: 28 RETGAQDVRVQVAAEVRGNLGDTVELPCHLLPSAPEIRVSQVTWLRLDAPEGKQNVAIFH 87
Query: 459 PQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFAT 638
PQYG SFP KPGKERLSFV S+G+G G+E+EVRDATL+LRGLTVEDEGNYTCEFAT
Sbjct: 88 PQYGRSFPSPKPGKERLSFVNTAPSSGAGQGSELEVRDATLSLRGLTVEDEGNYTCEFAT 147
Query: 639 FPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGET 818
FP+GTSRGVTWLRVIA+PQNHAE QEVT +L+PVPVARCVSAGGRPPARVSWLSPLDGE
Sbjct: 148 FPKGTSRGVTWLRVIAQPQNHAEKQEVTFNLDPVPVARCVSAGGRPPARVSWLSPLDGEA 207
Query: 819 RESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVS 998
+E+Q R+T+ PL ADGVK+ C+VEHESF+EP LLPV LSVRYPP+VS
Sbjct: 208 KETQGSGPLPGTVTVTSRYTVTPLSEADGVKVICKVEHESFQEPKLLPVILSVRYPPQVS 267
Query: 999 ISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFN 1178
ISGYDDNWYIGRSEATLNC+VRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVD+LFN
Sbjct: 268 ISGYDDNWYIGRSEATLNCNVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDRLFN 327
Query: 1179 TTFICTVTNAVGTGHAEQVVLVR 1247
TTFICTVTNAVGTG AEQVVLVR
Sbjct: 328 TTFICTVTNAVGTGQAEQVVLVR 350
>ref|XP_605244.5| PREDICTED: poliovirus receptor-like [Bos taurus].
Length = 405
Score = 328 bits (840), Expect = 2e-89
Identities = 168/321 (52%), Positives = 208/321 (64%), Gaps = 2/321 (0%)
Frame = +3
Query: 300 VRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSF 479
+ V +V G LG+ V LPC L P V V+QVTW + E ++VA+FHP GPSF
Sbjct: 31 ITVLAPVQVSGFLGENVTLPCKLHPLEHNVTVTQVTWTKQRQAEPARSVAVFHPTQGPSF 90
Query: 480 PRAKPGKERLSFV--KPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGT 653
+ RL F+ KPG+ +++DA+LA+R L VEDE NYTC+FATFP G
Sbjct: 91 HESS----RLEFMAAKPGE----------KLQDASLAVRELRVEDEANYTCQFATFPNGD 136
Query: 654 SRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQX 833
T LRV+A+PQN ET ++ LS PVPVARCVS GG PPAR+SW S D +T +Q
Sbjct: 137 KSARTQLRVLAQPQNKVETLDIPLSPNPVPVARCVSTGGHPPARISWSS--DEKTNTTQV 194
Query: 834 XXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYD 1013
L P + DG ITCRVEHES +EP++LP+TL+V YPPEVSISGYD
Sbjct: 195 PGPLPGTVTVISLLILTPSSQVDGRNITCRVEHESLEEPMVLPMTLAVSYPPEVSISGYD 254
Query: 1014 DNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFIC 1193
DNWYIGR E LNCD+ SKPEPTGY+WST +G P SAV QG +L++H+VD+ N TFIC
Sbjct: 255 DNWYIGRREVALNCDIHSKPEPTGYNWSTPNGTLPVSAVVQGTQLLIHTVDETINVTFIC 314
Query: 1194 TVTNAVGTGHAEQVVLVRETP 1256
VTNA+GT A +LVRE P
Sbjct: 315 LVTNALGTNQANVTILVRERP 335
>ref|XP_002695134.1| PREDICTED: poliovirus receptor-like [Bos taurus].
Length = 357
Score = 325 bits (832), Expect = 1e-88
Identities = 167/321 (52%), Positives = 207/321 (64%), Gaps = 2/321 (0%)
Frame = +3
Query: 300 VRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSF 479
+ V +V G LG+ V LPC L P V V+QVTW + E ++VA+FHP GPSF
Sbjct: 31 ITVLAPVQVSGFLGENVTLPCKLHPLEHNVTVTQVTWTKQRQAEPARSVAVFHPTQGPSF 90
Query: 480 PRAKPGKERLSFV--KPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGT 653
+ RL F+ KPG+ +++DA+LA+R L VEDE NYTC+FATFP G
Sbjct: 91 HESS----RLEFMAAKPGE----------KLQDASLAVRELRVEDEANYTCQFATFPNGD 136
Query: 654 SRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQX 833
T LRV+A+PQN ET ++ LS PVPVARCVS GG PPAR+SW S D +T +Q
Sbjct: 137 KSARTQLRVLAQPQNKVETLDIPLSPNPVPVARCVSTGGHPPARISWSS--DEKTNTTQV 194
Query: 834 XXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYD 1013
L P + DG ITCRVEHES +EP++LP+TL+V YPPEVSISGYD
Sbjct: 195 PGPLPGTVTVISLLILTPSSQVDGRNITCRVEHESLEEPMVLPMTLAVSYPPEVSISGYD 254
Query: 1014 DNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFIC 1193
DNWYIGR E LNCD+ SKPEPTGY+WST +G P SAV QG +L++H+VD+ N TFIC
Sbjct: 255 DNWYIGRREVALNCDIHSKPEPTGYNWSTPNGTLPVSAVVQGTQLLIHTVDETINVTFIC 314
Query: 1194 TVTNAVGTGHAEQVVLVRETP 1256
VTNA+GT A +LVR P
Sbjct: 315 LVTNALGTNQANVTILVRGFP 335
>ref|NP_001192951.1| poliovirus receptor-related protein 1 [Bos taurus].
Length = 515
Score = 174 bits (441), Expect = 3e-43
Identities = 117/330 (35%), Positives = 159/330 (48%), Gaps = 8/330 (2%)
Frame = +3
Query: 291 AQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYG 470
AQ V+V + G +G V L C P P V+++QVTW + T QNVAI++P G
Sbjct: 28 AQAQMVQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKA-TNGSKQNVAIYNPAMG 86
Query: 471 PSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQG 650
S P +ER+ F++P + D T+ L L +EDEG Y CEFATFP G
Sbjct: 87 VSV--LAPYRERVEFLRPSFT------------DGTIRLSRLELEDEGVYICEFATFPAG 132
Query: 651 TSRGVTWLRVIAEPQNHAETQEVTLSL-----EPVPVARCVSAGGRPPARVSWLSPLDGE 815
L V+A+P N E L E V VA C SA G+PP+ VSW + L GE
Sbjct: 133 NRESQLNLTVMAKPTNWIEGTHAVLRARKGQDEKVLVATCTSANGKPPSVVSWETRLKGE 192
Query: 816 TRESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEH--ESFKEPVLLPVTLSVRYPP 989
E Q R+ LVP A + C V + + F E + TL+V+Y P
Sbjct: 193 A-EYQEIRNPNGTVTVISRYRLVPSREAHRQSLACIVNYHMDRFWESL----TLNVQYEP 247
Query: 990 EVSISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHS-VD 1166
EV+I G+D NWY+ R + L C + P T Y W+T +G P AQ L ++
Sbjct: 248 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPIN 307
Query: 1167 KLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
T++C TN +GT A+ V + E P
Sbjct: 308 YSLAGTYVCEATNPIGTRSAQVEVNITEFP 337
>ref|XP_002693074.1| PREDICTED: poliovirus receptor-related 1 (herpesvirus entry mediator
C) [Bos taurus].
Length = 515
Score = 174 bits (441), Expect = 3e-43
Identities = 117/330 (35%), Positives = 159/330 (48%), Gaps = 8/330 (2%)
Frame = +3
Query: 291 AQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYG 470
AQ V+V + G +G V L C P P V+++QVTW + T QNVAI++P G
Sbjct: 28 AQAQMVQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKA-TNGSKQNVAIYNPAMG 86
Query: 471 PSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQG 650
S P +ER+ F++P + D T+ L L +EDEG Y CEFATFP G
Sbjct: 87 VSV--LAPYRERVEFLRPSFT------------DGTIRLSRLELEDEGVYICEFATFPAG 132
Query: 651 TSRGVTWLRVIAEPQNHAETQEVTLSL-----EPVPVARCVSAGGRPPARVSWLSPLDGE 815
L V+A+P N E L E V VA C SA G+PP+ VSW + L GE
Sbjct: 133 NRESQLNLTVMAKPTNWIEGTHAVLRARKGQDEKVLVATCTSANGKPPSVVSWETRLKGE 192
Query: 816 TRESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEH--ESFKEPVLLPVTLSVRYPP 989
E Q R+ LVP A + C V + + F E + TL+V+Y P
Sbjct: 193 A-EYQEIRNPNGTVTVISRYRLVPSREAHRQSLACIVNYHMDRFWESL----TLNVQYEP 247
Query: 990 EVSISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHS-VD 1166
EV+I G+D NWY+ R + L C + P T Y W+T +G P AQ L ++
Sbjct: 248 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPIN 307
Query: 1167 KLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
T++C TN +GT A+ V + E P
Sbjct: 308 YSLAGTYVCEATNPIGTRSAQVEVNITEFP 337
>ref|XP_002684791.1| PREDICTED: poliovirus receptor-related 3-like [Bos taurus].
Length = 815
Score = 135 bits (339), Expect = 2e-31
Identities = 85/300 (28%), Positives = 138/300 (46%), Gaps = 12/300 (4%)
Frame = +3
Query: 393 VSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRD 572
++Q++W ++ + +Q VA+ HPQ+G F G+ G + D
Sbjct: 352 ITQISWEKIHG-KSSQTVAVHHPQHG--------------FSVQGEYQGRVLFKNYSIND 396
Query: 573 ATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVP--- 743
AT+ L + D G Y C+ TFP G + T + V+ EP T+SL P
Sbjct: 397 ATITLHNIGFSDSGKYICKAVTFPLGNAESSTTVTVLVEP---------TVSLIKGPDSL 447
Query: 744 --------VARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRA 899
A C++A G+P A + W L GE ES ++ L P A
Sbjct: 448 IDGGNETVAAICIAATGKPVAHIDWEGDL-GEM-ESTTTSFPNETATIVSQYKLFPTRFA 505
Query: 900 DGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEP 1079
G +ITC V+H + ++ + L ++Y PEVS++GYD NW++GR L C+ + P P
Sbjct: 506 KGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP 565
Query: 1080 TGYDWSTTSGVFPASAVAQGPKL-IVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
WS G +P +A L VH + ++ ++C VTN++G ++V+ + + P
Sbjct: 566 FKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYVCKVTNSLGQRSDQKVIYISDPP 625
>ref|NP_001019665.1| poliovirus receptor-related protein 4 precursor [Bos taurus].
Length = 510
Score = 106 bits (264), Expect = 1e-22
Identities = 79/303 (26%), Positives = 124/303 (40%), Gaps = 2/303 (0%)
Frame = +3
Query: 336 LGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSF 515
LG +LPC P +V V W R+D E + +A+ + +YG A G+
Sbjct: 44 LGQDAKLPCFYRGD-PGEQVEHVAWARVDAGEGGRELALLNSKYGLHVSSAYEGRVEQ-- 100
Query: 516 VKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQ 695
P D + LR DEG Y C +TFP G+ + LRV+ P
Sbjct: 101 ----------PPPPRNPLDGAVLLRNAVHADEGEYECRVSTFPAGSFQARLRLRVLVPPL 150
Query: 696 NHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRF 875
+ + +A +A G P V+W + + G S F
Sbjct: 151 PSLNPGPPLEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTA--SHRSFTHSRSAAVTSEF 208
Query: 876 TLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDN--WYIGRSEATL 1049
LVP +G +TC V H + + L V + E S+ G +D W +GR A L
Sbjct: 209 HLVPSRSMNGQPLTCVVSHPGLLQDQRITHILQVAFLAEASVRGLEDRKLWQVGREGAML 268
Query: 1050 NCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAE 1229
C +P P+ Y+W+ G P+ A+G L ++ + T++C V+NA+ + ++
Sbjct: 269 KCLSEGQPPPS-YNWTRLDGPLPSGVRAEGDTLGFPTLTPEHSGTYVCRVSNALSSRDSQ 327
Query: 1230 QVV 1238
VV
Sbjct: 328 VVV 330
>ref|NP_001033647.1| cell adhesion molecule 1 [Bos taurus].
Length = 417
Score = 77.8 bits (190), Expect = 4e-14
Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 3/228 (1%)
Frame = +3
Query: 579 LALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPV-ARC 755
++L +++ DEG Y C+ T P S T + V+ P+N + ++E + C
Sbjct: 112 VSLTNVSISDEGRYFCQLYTDPPQES--YTTITVLVPPRNLMIDIQKDTAVEGEEIEVNC 169
Query: 756 VSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHE 935
+ +P + W E + + L DGV + C+VEH
Sbjct: 170 TAMASKPATTIRWFKG-SKELKGKSEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHP 228
Query: 936 SFKEPVLLPVTLSVRYPPEVSIS-GYDDNWYIGRSEAT-LNCDVRSKPEPTGYDWSTTSG 1109
+ + L V+Y P+V I Y +A L C+ KP+P W
Sbjct: 229 AVTGNLQTQRYLEVQYKPQVHIQMTYPLQGLTREGDALELTCEAIGKPQPVMVTWVRVDD 288
Query: 1110 VFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRET 1253
P AV GP L +++++K N T+ C +N VG H++ ++ V ++
Sbjct: 289 EMPQHAVLSGPNLFINNLNKTDNGTYRCEASNIVGKAHSDYMLYVYDS 336
>ref|XP_002684704.1| PREDICTED: cell adhesion molecule 2-like [Bos taurus].
Length = 454
Score = 74.3 bits (181), Expect = 4e-13
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 10/240 (4%)
Frame = +3
Query: 570 DATLALRGLTVEDEGNYTCEFATFPQGTSRG-VTWLRVIAEPQNHAETQEVTLSLEPVPV 746
+ ++++ +++ DEG YTC T P TS+ +T L V +PQ + V +
Sbjct: 145 ELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVPEKPQISGFSSPVMEG--DLMQ 202
Query: 747 ARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTL-----VPLGRA-DGV 908
C ++G +P A + W +E + FT+ + R+ DGV
Sbjct: 203 LTCKTSGSKPAADIRWFK----NDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGV 258
Query: 909 KITCRVEHESFK-EPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEPTG 1085
+ CRV+HES P + L + Y P V I G+ L C+ + KP P
Sbjct: 259 AVICRVDHESLNATPQVAMQVLEIHYTPSVKIIPSTPFPQEGQ-PLILTCESKGKPLPEP 317
Query: 1086 YDWSTTSGVF--PASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETPN 1259
W+ G P V G +L + ++K N T+ C TN +G AE V++V + PN
Sbjct: 318 VLWTKDGGELPDPDRMVVSGRELNILFLNKTDNGTYRCEATNTIGQSSAEYVLIVHD-PN 376
>ref|XP_595936.4| PREDICTED: cell adhesion molecule 2 [Bos taurus].
Length = 454
Score = 74.3 bits (181), Expect = 4e-13
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 10/240 (4%)
Frame = +3
Query: 570 DATLALRGLTVEDEGNYTCEFATFPQGTSRG-VTWLRVIAEPQNHAETQEVTLSLEPVPV 746
+ ++++ +++ DEG YTC T P TS+ +T L V +PQ + V +
Sbjct: 145 ELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVPEKPQISGFSSPVMEG--DLMQ 202
Query: 747 ARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTL-----VPLGRA-DGV 908
C ++G +P A + W +E + FT+ + R+ DGV
Sbjct: 203 LTCKTSGSKPAADIRWFK----NDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGV 258
Query: 909 KITCRVEHESFK-EPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEPTG 1085
+ CRV+HES P + L + Y P V I G+ L C+ + KP P
Sbjct: 259 AVICRVDHESLNATPQVAMQVLEIHYTPSVKIIPSTPFPQEGQ-PLILTCESKGKPLPEP 317
Query: 1086 YDWSTTSGVF--PASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETPN 1259
W+ G P V G +L + ++K N T+ C TN +G AE V++V + PN
Sbjct: 318 VLWTKDGGELPDPDRMVVSGRELNILFLNKTDNGTYRCEATNTIGQSSAEYVLIVHD-PN 376
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 75,689,097
Number of extensions: 2124381
Number of successful extensions: 12019
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 11843
Number of HSP's successfully gapped: 18
Length of query: 720
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 610
Effective length of database: 14,041,694
Effective search space: 8565433340
Effective search space used: 8565433340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013202
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013202
(2160 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852651.1| PREDICTED: similar to Poliovirus receptor relat... 782 0.0
Alignment gi|XP_866103.1| PREDICTED: similar to poliovirus receptor-relat... 535 e-152
Alignment gi|XP_533645.2| PREDICTED: similar to Poliovirus receptor precu... 352 1e-96
Alignment gi|XP_546481.2| PREDICTED: similar to Poliovirus receptor relat... 172 9e-43
Alignment gi|XP_535735.2| PREDICTED: similar to poliovirus receptor-relat... 140 6e-33
Alignment gi|XP_852370.1| PREDICTED: similar to poliovirus receptor-relat... 108 2e-23
Alignment gi|XP_536568.2| PREDICTED: similar to immunoglobulin superfamil... 80 6e-15
Alignment gi|XP_544804.2| PREDICTED: similar to immunoglobulin superfamil... 79 2e-14
Alignment gi|XP_853037.1| PREDICTED: similar to immunoglobulin superfamil... 63 1e-09
Alignment gi|XP_541684.2| PREDICTED: similar to kin of IRRE-like 2 isofor... 52 3e-06
>ref|XP_852651.1| PREDICTED: similar to Poliovirus receptor related protein 2 precursor
(Herpes virus entry mediator B) (HveB) (Nectin 2) (CD112
antigen) isoform 2 [Canis familiaris].
Length = 541
Score = 782 bits (2020), Expect = 0.0
Identities = 386/512 (75%), Positives = 418/512 (81%)
Frame = +3
Query: 279 RETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFH 458
RET AQDV+VRV +EVRG+LG TV+LPCHLLP PEVRVSQVTWL +D +++VA FH
Sbjct: 30 RETGAQDVQVRVPSEVRGYLGGTVQLPCHLLPTGPEVRVSQVTWLHVDATGASRSVAAFH 89
Query: 459 PQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFAT 638
P YGPSF +PGKERLSFV GQSTG+ GTE+E+RDATLAL+GLTVEDEGNYTCEFAT
Sbjct: 90 PSYGPSFRSPQPGKERLSFVTAGQSTGTRQGTEMELRDATLALQGLTVEDEGNYTCEFAT 149
Query: 639 FPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGET 818
FP GTSRGVTWLR IA+PQNHAETQEVTLSL+PVPVARCVS GGRPPAR+SW SPLDGE
Sbjct: 150 FPSGTSRGVTWLRAIAQPQNHAETQEVTLSLDPVPVARCVSEGGRPPARISWFSPLDGEA 209
Query: 819 RESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVS 998
+ESQ RFTLVPL R DGVK+TC+VEHESF+EP+LLPVTLSVRYPPEVS
Sbjct: 210 KESQISGPVPGTVTVTSRFTLVPLSRVDGVKVTCKVEHESFEEPILLPVTLSVRYPPEVS 269
Query: 999 ISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFN 1178
ISGYDDNWY+GRSEATL+CDVRSKPEPTGYDWSTT+GVFPASAVAQGP+LI+HSVD+L N
Sbjct: 270 ISGYDDNWYLGRSEATLSCDVRSKPEPTGYDWSTTAGVFPASAVAQGPQLIIHSVDRLVN 329
Query: 1179 TTFICTVTNAVGTGHAEQVVLVRETPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQ 1358
TTFICTVTNAVGTG AEQVVLVRETPN LICRQ
Sbjct: 330 TTFICTVTNAVGTGRAEQVVLVRETPNTAGAGATGGIIGGIIAAIIATAVVATGILICRQ 389
Query: 1359 QRKEQRLQGAEEEEDLEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHSPLKTPYFDAGA 1538
QRKEQRLQGAEEE+DLEGPPSYKPP PKAKLEEPEMPSQLFTLG SEHSPLKTPYFDAG
Sbjct: 390 QRKEQRLQGAEEEDDLEGPPSYKPPAPKAKLEEPEMPSQLFTLGPSEHSPLKTPYFDAGI 449
Query: 1539 PCPEQETPRYHELPTLEERSGPLLLGATSVGSPILVPPGPPAAERVSXXXXXXXXXXXXX 1718
PC EQ+ PRYHELPTLEERSGPLLLGAT +G P+LV PGPPA E VS
Sbjct: 450 PCAEQDMPRYHELPTLEERSGPLLLGATGLGPPMLVSPGPPAMEGVSLDLEDEEEEEDYI 509
Query: 1719 XKINPIYDALSYSSPSDSYQGKGFVMSRAMYV 1814
KI+PIYDALSYSSPSDSYQ KGFVMSRAMYV
Sbjct: 510 DKISPIYDALSYSSPSDSYQSKGFVMSRAMYV 541
>ref|XP_866103.1| PREDICTED: similar to poliovirus receptor-related 2 (herpesvirus
entry mediator B) isoform 3 [Canis familiaris].
Length = 492
Score = 535 bits (1378), Expect = e-152
Identities = 257/326 (78%), Positives = 285/326 (87%)
Frame = +3
Query: 279 RETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFH 458
RET AQDV+VRV +EVRG+LG TV+LPCHLLP PEVRVSQVTWL +D +++VA FH
Sbjct: 30 RETGAQDVQVRVPSEVRGYLGGTVQLPCHLLPTGPEVRVSQVTWLHVDATGASRSVAAFH 89
Query: 459 PQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFAT 638
P YGPSF +PGKERLSFV GQSTG+ GTE+E+RDATLAL+GLTVEDEGNYTCEFAT
Sbjct: 90 PSYGPSFRSPQPGKERLSFVTAGQSTGTRQGTEMELRDATLALQGLTVEDEGNYTCEFAT 149
Query: 639 FPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGET 818
FP GTSRGVTWLR IA+PQNHAETQEVTLSL+PVPVARCVS GGRPPAR+SW SPLDGE
Sbjct: 150 FPSGTSRGVTWLRAIAQPQNHAETQEVTLSLDPVPVARCVSEGGRPPARISWFSPLDGEA 209
Query: 819 RESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVS 998
+ESQ RFTLVPL R DGVK+TC+VEHESF+EP+LLPVTLSVRYPPEVS
Sbjct: 210 KESQISGPVPGTVTVTSRFTLVPLSRVDGVKVTCKVEHESFEEPILLPVTLSVRYPPEVS 269
Query: 999 ISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFN 1178
ISGYDDNWY+GRSEATL+CDVRSKPEPTGYDWSTT+GVFPASAVAQGP+LI+HSVD+L N
Sbjct: 270 ISGYDDNWYLGRSEATLSCDVRSKPEPTGYDWSTTAGVFPASAVAQGPQLIIHSVDRLVN 329
Query: 1179 TTFICTVTNAVGTGHAEQVVLVRETP 1256
TTFICTVTNAVGTG AEQVVLVR+TP
Sbjct: 330 TTFICTVTNAVGTGRAEQVVLVRDTP 355
>ref|XP_533645.2| PREDICTED: similar to Poliovirus receptor precursor (CD155 antigen)
[Canis familiaris].
Length = 391
Score = 352 bits (902), Expect = 1e-96
Identities = 182/322 (56%), Positives = 220/322 (68%), Gaps = 3/322 (0%)
Frame = +3
Query: 300 VRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSF 479
V V A+V G LGDT EL C L P V V+QVTW R D ++ NVA+FHP GPSF
Sbjct: 13 VGVLAPAQVHGLLGDTAELSCQLPPLEHGVHVTQVTWTRRDAAGEDFNVAVFHPTQGPSF 72
Query: 480 PRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSR 659
P +PG+ +PG+ E+RD +LALRGL +DE NYTC FA FP+G+
Sbjct: 73 P--EPGRLEFVAARPGE----------ELRDGSLALRGLRADDEANYTCRFAMFPEGSRS 120
Query: 660 GVTWLRVIAEPQNHAETQEVT---LSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQ 830
TWLRV+A+P+N AE++EV LS EPVPVARCVS+ GRPPAR+SW LDG+ ESQ
Sbjct: 121 AHTWLRVLAQPENKAESEEVLFSPLSPEPVPVARCVSSEGRPPARISW-PHLDGQANESQ 179
Query: 831 XXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGY 1010
TL+P + DG +TCRVEHES K+PVLLPVTL+V YPPEVSISGY
Sbjct: 180 VPGHLPGTFTVISLLTLIPSSKVDGKNVTCRVEHESLKKPVLLPVTLAVPYPPEVSISGY 239
Query: 1011 DDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFI 1190
D Y+G SE TL+CDVRSKPEPTGY+WSTT G P SAVAQG +L++H+VD+ NTTFI
Sbjct: 240 DGTLYMGHSEVTLSCDVRSKPEPTGYNWSTTVGPLPPSAVAQGSQLLIHTVDESINTTFI 299
Query: 1191 CTVTNAVGTGHAEQVVLVRETP 1256
C V+NA+GTG AE +LVRE P
Sbjct: 300 CRVSNALGTGQAELSILVREKP 321
>ref|XP_546481.2| PREDICTED: similar to Poliovirus receptor related protein 1 precursor
(Herpes virus entry mediator C) (HveC) (Nectin 1)
(Herpesvirus Ig-like receptor) (HIgR) (CD111 antigen)
[Canis familiaris].
Length = 516
Score = 172 bits (437), Expect = 9e-43
Identities = 112/325 (34%), Positives = 158/325 (48%), Gaps = 8/325 (2%)
Frame = +3
Query: 306 VRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPR 485
V+V + G +G V L C P P V+++QVTW + T QNVAI++P G S
Sbjct: 33 VQVNDSMYGFIGTDVVLHCSFTNPLPSVKITQVTWQKA-TNGSKQNVAIYNPAMGVSV-- 89
Query: 486 AKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGV 665
P +ER+ F++P + D T+ L L ++DEG Y CEFATFP G
Sbjct: 90 LAPYRERVEFLRPSFT------------DGTIRLSRLELDDEGVYICEFATFPAGNRESQ 137
Query: 666 TWLRVIAEPQNHAETQEVTLSL-----EPVPVARCVSAGGRPPARVSWLSPLDGETRESQ 830
L V+A+P N E + L + V VA C SA G+PP+ VSW + L GE E Q
Sbjct: 138 LNLTVMAKPTNWVEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA-EYQ 196
Query: 831 XXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEH--ESFKEPVLLPVTLSVRYPPEVSIS 1004
R+ LVP A + C V + + F+E + TL+V+Y PEV+I
Sbjct: 197 EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFRESL----TLNVQYEPEVTIE 252
Query: 1005 GYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHS-VDKLFNT 1181
G+D NWY+ R + L C + P T Y W+T +G P AQ L ++
Sbjct: 253 GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPINYSLAG 312
Query: 1182 TFICTVTNAVGTGHAEQVVLVRETP 1256
T++C TN +GT + V + E P
Sbjct: 313 TYVCEATNPIGTRSGQVEVNITEFP 337
>ref|XP_535735.2| PREDICTED: similar to poliovirus receptor-related 3 isoform beta
[Canis familiaris].
Length = 495
Score = 140 bits (352), Expect = 6e-33
Identities = 99/389 (25%), Positives = 170/389 (43%), Gaps = 12/389 (3%)
Frame = +3
Query: 393 VSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRD 572
++Q++W ++ + +Q VA+ HPQYG F G+ G + D
Sbjct: 70 ITQISWEKIHG-KSSQTVAVHHPQYG--------------FSVQGEYQGRVLFKNYSLND 114
Query: 573 ATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVP--- 743
AT+ L + D G Y C+ TFP G ++ T + V+ EP T+SL P
Sbjct: 115 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEP---------TVSLIKGPDSL 165
Query: 744 --------VARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRA 899
A C++A G+P A + W L GE ES ++ + P A
Sbjct: 166 IDGGNETVAAICIAATGKPVAHIDWEGDL-GEM-ESTTTSFPNETATIVSQYKVFPTRFA 223
Query: 900 DGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEP 1079
G +ITC V+H + ++ + L ++Y PEVS++GYD NW++GR L C+ + P P
Sbjct: 224 RGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP 283
Query: 1080 TGYDWSTTSGVFPASAVAQGPKL-IVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
WS G +P +A L V+ + ++ ++C VTN++G ++V+ + + P
Sbjct: 284 FKSVWSRLDGQWPDGLLASDNTLHFVYPLTFNYSGVYVCKVTNSLGQRSDQKVIYISDVP 343
Query: 1257 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQQRKEQRLQGAEEEEDLEGPPSYKPPT 1436
L+ ++++ L ++ ++ PP++KPP
Sbjct: 344 FKQTSSIAVAGAVIGAVLALFIIAVFVTVLLTPRKKRPSYL-----DKVIDLPPTHKPPP 398
Query: 1437 PKAKLEEPEMPSQLFTLGASEHSPLKTPY 1523
+ P + L L +EH PL+T +
Sbjct: 399 MYEERSPPLLQKDL--LYQTEHLPLQTQF 425
>ref|XP_852370.1| PREDICTED: similar to poliovirus receptor-related 4 [Canis
familiaris].
Length = 469
Score = 108 bits (271), Expect = 2e-23
Identities = 82/303 (27%), Positives = 124/303 (40%), Gaps = 2/303 (0%)
Frame = +3
Query: 336 LGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSF 515
LG +LPC P +V QV W R+D E + +A+ H +YG A G R+
Sbjct: 43 LGQDAKLPCFYRGD-PGEQVGQVAWARVDAGEGARELALLHSKYGLHVSAAYEG--RVEQ 99
Query: 516 VKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQ 695
P +S D + LR DEG Y C +TFP G+ + LRV+ P
Sbjct: 100 PPPPRSP----------LDGAVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPL 149
Query: 696 NHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRF 875
+ + +A +A G P V+W + + G S F
Sbjct: 150 PSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTA--SSRSFKHSRSAAVTSEF 207
Query: 876 TLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDN--WYIGRSEATL 1049
LVP +G +TC V H + + L V + E S+ G +D W +GR ATL
Sbjct: 208 HLVPSRSMNGQPLTCVVSHPGLLQDQRITHVLQVAFLAEASVRGLEDQKLWQVGREGATL 267
Query: 1050 NCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAE 1229
C P P+ Y+W+ G P+ QG L + + T++C V+N + + ++
Sbjct: 268 KCLSEGHPPPS-YNWTRLDGPLPSGVRVQGDTLGFPPLTAEHSGTYVCHVSNELSSRDSQ 326
Query: 1230 QVV 1238
V
Sbjct: 327 VTV 329
>ref|XP_536568.2| PREDICTED: similar to immunoglobulin superfamily, member 4A
(predicted) [Canis familiaris].
Length = 506
Score = 80.5 bits (197), Expect = 6e-15
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 3/229 (1%)
Frame = +3
Query: 579 LALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPV-ARC 755
++L +++ DEG Y C+ T P S T + V+ P+N + ++E + C
Sbjct: 145 VSLTNVSISDEGRYFCQLYTDPPQES--YTTITVLVPPRNLMIDIQKDTAVEGEEIEVNC 202
Query: 756 VSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHE 935
+ +P + W + E + + L DGV + C+VEH
Sbjct: 203 TAMASKPATTIRWFKG-NKELKGKSEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHP 261
Query: 936 SFKEPVLLPVTLSVRYPPEVSIS-GYDDNWYIGRSEA-TLNCDVRSKPEPTGYDWSTTSG 1109
+ + L V+Y P+V I Y +A L C+ KP+P W
Sbjct: 262 AVTGNLQTQRYLEVQYKPQVHIQMTYPVQGLTREGDAFELTCEAIGKPQPVMVTWVRVDD 321
Query: 1110 VFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
P AV GP L +++++K N T+ C +N VG H++ ++ V + P
Sbjct: 322 EMPQHAVLSGPNLFINNLNKTDNGTYRCEASNIVGKAHSDYMLYVYDPP 370
>ref|XP_544804.2| PREDICTED: similar to immunoglobulin superfamily, member 4D [Canis
familiaris].
Length = 438
Score = 79.0 bits (193), Expect = 2e-14
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 10/240 (4%)
Frame = +3
Query: 570 DATLALRGLTVEDEGNYTCEFATFPQGTSRG-VTWLRVIAEPQNHAETQEVTLSLEPVPV 746
+ ++++ +++ DEG YTC T P TS+ +T L V +PQ + V +
Sbjct: 89 ELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVPEKPQISGFSSPVMEG--DLMQ 146
Query: 747 ARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTL-----VPLGRA-DGV 908
C ++G +P A + W +E + FT+ + R+ DGV
Sbjct: 147 LTCKTSGSKPAADIRWFK----NDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGV 202
Query: 909 KITCRVEHESFK-EPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEPTG 1085
+ CRV+HES P + L + Y P V I G+ L C+ + KP P
Sbjct: 203 TVICRVDHESLNATPQVAMQVLEIHYTPSVKIIPSTPFPQEGQ-PLILTCESKGKPLPEP 261
Query: 1086 YDWSTTSGVF--PASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETPN 1259
W+ G P V G +L + ++K N T+ C TN +G AE V++V + PN
Sbjct: 262 VLWTKDGGELPDPDRMVVSGRELNILFLNKTDNGTYRCEATNTIGQSSAEYVLIVHDVPN 321
>ref|XP_853037.1| PREDICTED: similar to immunoglobulin superfamily, member 4B [Canis
familiaris].
Length = 530
Score = 62.8 bits (151), Expect = 1e-09
Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 6/233 (2%)
Frame = +3
Query: 570 DATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAET-QEVTLSLEPVPV 746
+ ++++ + + DEG YTC T P T++ + + V+ PQ T + +L +
Sbjct: 224 ELSISISNVALADEGEYTCSIFTMPVRTAKSL--VTVLGIPQKPIITGYKSSLREKETTT 281
Query: 747 ARCVSAGGRPPARVSWL---SPLDGE-TRESQXXXXXXXXXXXXXRFTLVPLGRADGVKI 914
C S+G +P A+++W L GE TR + F + DG I
Sbjct: 282 LSCQSSGSKPAAQLTWRKGDQELHGEPTRVQEDPNGKTFTVSSSVTFQV--SREDDGADI 339
Query: 915 TCRVEHESFK-EPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEPTGYD 1091
C V HES K + V Y P I + G+ + L+C+ R P P Y
Sbjct: 340 VCSVNHESLKGADRSTSQRIEVLYTPTAKIRPDPPHPREGQ-KLLLHCEGRGNPVPQQYL 398
Query: 1092 WSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRE 1250
W G P + Q LI ++K + T+ CT T+ +G+ A + V +
Sbjct: 399 WE-KEGSVPPLKMTQESALIFPFLNKSDSGTYGCTATSNMGSYKAYYTLNVND 450
>ref|XP_541684.2| PREDICTED: similar to kin of IRRE-like 2 isoform c [Canis
familiaris].
Length = 482
Score = 51.6 bits (122), Expect = 3e-06
Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 6/191 (3%)
Frame = +3
Query: 579 LALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEP-VPV-AR 752
L +R + +ED+ +Y C+ G L V+ P+ +SL VPV
Sbjct: 85 LYIRPVELEDQASYECQATQ--AGLRSRPAQLHVLVPPEAPQVLGGPFVSLVAGVPVNLT 142
Query: 753 CVSAG-GRPPARVSWLSP---LDGETRESQXXXXXXXXXXXXXRFTLVPLGRADGVKITC 920
C S G RP + W LDG T Q +L P DG + C
Sbjct: 143 CRSRGDARPTPELLWFRDGIRLDGTTFH-QPLLKEGTTGSVESILSLTPSSHDDGATLVC 201
Query: 921 RVEHESFKEPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWST 1100
R ++ +TLS++YPP V++S + + + T C ++P TGY W+
Sbjct: 202 RARSQALPSGKDTAITLSLQYPPVVTLSA-EPQTVLEGEKVTFLCQATAQPPVTGYRWAK 260
Query: 1101 TSGVFPASAVA 1133
F V+
Sbjct: 261 GDASFLTEPVS 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 79,120,866
Number of extensions: 2200748
Number of successful extensions: 12198
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 12036
Number of HSP's successfully gapped: 10
Length of query: 720
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 610
Effective length of database: 15,207,544
Effective search space: 9276601840
Effective search space used: 9276601840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013202
(2160 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127269.2| PREDICTED: poliovirus receptor-related prote... 667 0.0
Alignment gi|NP_001090963.1| poliovirus receptor related 2 [Sus scrofa]. 635 0.0
Alignment gi|XP_003130000.2| PREDICTED: poliovirus receptor-related prote... 173 4e-43
Alignment gi|NP_001001262.1| poliovirus receptor-related protein 1 precur... 171 2e-42
Alignment gi|XP_003132733.2| PREDICTED: poliovirus receptor-related prote... 145 1e-34
Alignment gi|XP_001927502.1| PREDICTED: poliovirus receptor-related prote... 105 8e-23
Alignment gi|XP_003129935.2| PREDICTED: cell adhesion molecule 1-like [Su... 80 5e-15
Alignment gi|XP_003125733.1| PREDICTED: cell adhesion molecule 3-like [Su... 66 9e-11
Alignment gi|XP_001929212.2| PREDICTED: cell adhesion molecule 3 isoform ... 65 2e-10
Alignment gi|XP_003127121.1| PREDICTED: kin of IRRE-like protein 2 isofor... 57 5e-08
>ref|XP_003127269.2| PREDICTED: poliovirus receptor-related protein 2-like [Sus scrofa].
Length = 525
Score = 667 bits (1721), Expect = 0.0
Identities = 346/506 (68%), Positives = 375/506 (74%), Gaps = 3/506 (0%)
Frame = +3
Query: 306 VRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPR 485
V A+V G LG+ +L C L P EV V+QVTW + E +++VA+FHP GPSFP
Sbjct: 32 VLAPAQVLGFLGNITKLSCKLQPLQHEVTVTQVTWTQQKLSEASRSVAVFHPTRGPSFP- 90
Query: 486 AKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGV 665
+PG+ + G+ EV+DA+L + L EDE NYTC+FATFP G
Sbjct: 91 -EPGRWEFEAARAGE----------EVQDASLIIWELRAEDEANYTCQFATFPDGDRSAR 139
Query: 666 TWLRVIAEPQNHAETQEVTLS---LEPVPVARCVSAGGRPPARVSWLSPLDGETRESQXX 836
T LRV+A+PQN ETQEV LS LEPVPVARCVS GGRPPAR+SW S LD + +SQ
Sbjct: 140 TRLRVLAQPQNKVETQEVPLSPLSLEPVPVARCVSTGGRPPARISWSSHLDSKAYKSQVP 199
Query: 837 XXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDD 1016
TL P + DG +TC+VEHESF+EP++LPVTL+V YPPEVSISGYDD
Sbjct: 200 GPRPGTFTVSSFLTLTPSSQVDGQNVTCKVEHESFEEPMVLPVTLTVPYPPEVSISGYDD 259
Query: 1017 NWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICT 1196
NWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICT
Sbjct: 260 NWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICT 319
Query: 1197 VTNAVGTGHAEQVVLVRETPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQQRKEQR 1376
VTNAVGTGHAEQVVLVRETPN LICRQQRKEQR
Sbjct: 320 VTNAVGTGHAEQVVLVRETPNTAGAGATGGIIGGIIAAIIATAVAATGILICRQQRKEQR 379
Query: 1377 LQGAEEEEDLEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHSPLKTPYFDAGAPCPEQE 1556
LQGAEEEEDLEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHSPLKTPYFDAGAPCPEQE
Sbjct: 380 LQGAEEEEDLEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHSPLKTPYFDAGAPCPEQE 439
Query: 1557 TPRYHELPTLEERSGPLLLGATSVGSPILVPPGPPAAERVSXXXXXXXXXXXXXXKINPI 1736
PRYHELPTLEERSGPLLLGATSVGSPILVPPGPPAAERVS KINPI
Sbjct: 440 MPRYHELPTLEERSGPLLLGATSVGSPILVPPGPPAAERVSLDLEDEEEEEDYLDKINPI 499
Query: 1737 YDALSYSSPSDSYQGKGFVMSRAMYV 1814
YDALSYSSPSDSYQGKGFVMSRAMYV
Sbjct: 500 YDALSYSSPSDSYQGKGFVMSRAMYV 525
>ref|NP_001090963.1| poliovirus receptor related 2 [Sus scrofa].
Length = 479
Score = 635 bits (1637), Expect = 0.0
Identities = 312/326 (95%), Positives = 313/326 (96%)
Frame = +3
Query: 279 RETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFH 458
RETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFH
Sbjct: 28 RETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFH 87
Query: 459 PQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFAT 638
PQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFAT
Sbjct: 88 PQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFAT 147
Query: 639 FPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGET 818
FPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGET
Sbjct: 148 FPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGET 207
Query: 819 RESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVS 998
RESQ RFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVS
Sbjct: 208 RESQVSGPVPGTVTVTSRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVS 267
Query: 999 ISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFN 1178
ISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFN
Sbjct: 268 ISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFN 327
Query: 1179 TTFICTVTNAVGTGHAEQVVLVRETP 1256
TTFICTVTNAVGTGHAEQVVLVR+TP
Sbjct: 328 TTFICTVTNAVGTGHAEQVVLVRDTP 353
>ref|XP_003130000.2| PREDICTED: poliovirus receptor-related protein 1-like [Sus scrofa].
Length = 459
Score = 173 bits (438), Expect = 4e-43
Identities = 127/433 (29%), Positives = 186/433 (42%), Gaps = 8/433 (1%)
Frame = +3
Query: 306 VRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPR 485
V+V + G +G V L C P P V+++QVTW + T QNVAI++P G S
Sbjct: 33 VQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKA-TNGSKQNVAIYNPAMGVSV-- 89
Query: 486 AKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGV 665
P +ER+ F++P + D T+ L L +EDEG Y CEFATFP G
Sbjct: 90 LAPYRERVEFLRPSFT------------DGTIRLSRLELEDEGVYICEFATFPAGNRESQ 137
Query: 666 TWLRVIAEPQNHAETQEVTLSL-----EPVPVARCVSAGGRPPARVSWLSPLDGETRESQ 830
L V+A+P N E + L + V VA C SA G+PP+ VSW + L GE E Q
Sbjct: 138 LNLTVMAKPTNWIEGTQAVLRAKKGKDDKVLVATCTSANGKPPSVVSWETHLKGEA-EYQ 196
Query: 831 XXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEH--ESFKEPVLLPVTLSVRYPPEVSIS 1004
R+ LVP + C V + + F+E + TL+V+Y PEV+I
Sbjct: 197 EIRNPNGTVTVISRYRLVPSREDHRQSLACIVNYHMDRFRESL----TLNVQYEPEVTIE 252
Query: 1005 GYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHS-VDKLFNT 1181
G+D NWY+ R + L C + P T Y W+T +G P AQ L ++
Sbjct: 253 GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPINYSMAG 312
Query: 1182 TFICTVTNAVGTGHAEQVVLVRETPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQQ 1361
T+IC TN +GT + V + E P +
Sbjct: 313 TYICEATNPIGTRSGQVEVNITEKPLSQGGLGSMASFLGCTVALVVILGVAPTIFLLYHW 372
Query: 1362 RKEQRLQGAEEEEDLEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHSPLKTPYFDAGAP 1541
+++ RL+ + L +P + L PE ++T + + G P
Sbjct: 373 QRKSRLEMEGDGTALPSSQKLEPSPNRQSLLAPE--------------DIQTLHLEPGKP 418
Query: 1542 CPEQETPRYHELP 1580
P+Q+ +LP
Sbjct: 419 QPQQDEEEQQKLP 431
>ref|NP_001001262.1| poliovirus receptor-related protein 1 precursor [Sus scrofa].
Length = 515
Score = 171 bits (432), Expect = 2e-42
Identities = 113/325 (34%), Positives = 157/325 (48%), Gaps = 8/325 (2%)
Frame = +3
Query: 306 VRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPR 485
V+V + G +G V L C P P V+++QVTW + T QNVAI++P G S
Sbjct: 33 VQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKA-TNGSKQNVAIYNPAMGVSV-- 89
Query: 486 AKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGV 665
P +ER+ F++P + D T+ L L +EDEG Y CEFATFP G
Sbjct: 90 LAPYRERVEFLRPSFT------------DGTIRLSRLELEDEGVYICEFATFPAGNRESQ 137
Query: 666 TWLRVIAEPQNHAETQEVTLSL-----EPVPVARCVSAGGRPPARVSWLSPLDGETRESQ 830
L V+A+P N E + L + V VA C SA G+PP+ VSW + L GE E Q
Sbjct: 138 LNLTVMAKPTNWIEGTQAVLRAKKGKDDKVLVATCTSANGKPPSVVSWETHLKGEA-EYQ 196
Query: 831 XXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEH--ESFKEPVLLPVTLSVRYPPEVSIS 1004
R+ LVP + C V + + F+E + TL+V+Y PEV+I
Sbjct: 197 EIRNPNGTVTVISRYRLVPSREDHRQSLACIVNYHMDRFRESL----TLNVQYEPEVTIE 252
Query: 1005 GYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHS-VDKLFNT 1181
G+D NWY+ R + L C + P T Y W+T +G P AQ L ++
Sbjct: 253 GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPINYSMAG 312
Query: 1182 TFICTVTNAVGTGHAEQVVLVRETP 1256
T+IC TN +GT + V + E P
Sbjct: 313 TYICEATNPIGTRSGQVEVNITEFP 337
>ref|XP_003132733.2| PREDICTED: poliovirus receptor-related protein 3-like [Sus scrofa].
Length = 550
Score = 145 bits (365), Expect = 1e-34
Identities = 103/389 (26%), Positives = 172/389 (44%), Gaps = 12/389 (3%)
Frame = +3
Query: 393 VSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRD 572
++Q++W ++ + +Q VA+ HPQYG F G+ G + D
Sbjct: 125 ITQISWEKIHG-KSSQTVAVHHPQYG--------------FSVQGEYQGRVLFKNYSLND 169
Query: 573 ATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVP--- 743
AT+ L + D G Y C+ TFP G ++ T + V+ EP T+SL P
Sbjct: 170 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEP---------TVSLIKGPDSL 220
Query: 744 --------VARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRA 899
A C++A G+P A + W L GE ES ++ L P A
Sbjct: 221 IDGGNETVAAICIAATGKPVAHIDWEGDL-GEM-ESTTTSFPNETATIVSQYKLFPTRFA 278
Query: 900 DGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEP 1079
G +ITC V+H + ++ + L ++Y PEVS++GYD NW++GR L C+ + P P
Sbjct: 279 RGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP 338
Query: 1080 TGYDWSTTSGVFPASAVAQGPKL-IVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
WS G +P +A L VH + ++ ++C VTN++G ++V+ + + P
Sbjct: 339 FKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYVCKVTNSLGQRSDQKVIYISDVP 398
Query: 1257 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQQRKEQRLQGAEEEEDLEGPPSYKPPT 1436
L+ ++++ L ++ ++ PP++KPP
Sbjct: 399 FKQTSSIAVAGAIIGAVLALFIIAIFVTVLLTPRKKRPSYL-----DKVIDLPPTHKPP- 452
Query: 1437 PKAKLEEPEMPSQLFTLGASEHSPLKTPY 1523
P + P +P Q L +EH PL+T +
Sbjct: 453 PMYEERSPPLP-QKELLYQTEHLPLQTQF 480
>ref|XP_001927502.1| PREDICTED: poliovirus receptor-related protein 4-like [Sus scrofa].
Length = 509
Score = 105 bits (263), Expect = 8e-23
Identities = 79/303 (26%), Positives = 124/303 (40%), Gaps = 2/303 (0%)
Frame = +3
Query: 336 LGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSF 515
LG +LPC P +V QV W R+D E + +A+ + +YG A G+
Sbjct: 43 LGQDAKLPCFYRGD-PGEQVEQVAWARVDMSEGARELALLNSKYGLHVSSAYEGRVEQ-- 99
Query: 516 VKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQ 695
P D + LR DEG Y C +TFP G+ + LRV+ P
Sbjct: 100 ----------PPPPRNPLDGAVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPL 149
Query: 696 NHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRF 875
+ + +A +A G P V+W + + G T S F
Sbjct: 150 PSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTT--SSRSFTHSRSSAVTSEF 207
Query: 876 TLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDN--WYIGRSEATL 1049
LVP +G +TC V H + + L V + E S+ G +D W +GR A L
Sbjct: 208 HLVPSRSMNGQPLTCVVSHPGLLQDQRITHILQVAFLAEASVRGLEDRKLWQVGREGAML 267
Query: 1050 NCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAE 1229
C +P P+ ++W+ G P+ A+G L + + T++C V+N + + ++
Sbjct: 268 KCLSEGQPPPS-FNWTRLDGPLPSGVRAEGDTLGFPPLTTEHSGTYVCHVSNELSSRDSQ 326
Query: 1230 QVV 1238
VV
Sbjct: 327 VVV 329
>ref|XP_003129935.2| PREDICTED: cell adhesion molecule 1-like [Sus scrofa].
Length = 545
Score = 80.1 bits (196), Expect = 5e-15
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 3/229 (1%)
Frame = +3
Query: 579 LALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPV-ARC 755
++L +++ DEG Y C+ T P S T + V+ P+N + ++E + C
Sbjct: 140 VSLTNVSISDEGRYFCQLYTDPPQES--YTTITVLVPPRNLMIDIQKDTAVEGEEIEVNC 197
Query: 756 VSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHE 935
+ +P + W + E + + L DGV + C+VEH
Sbjct: 198 TAMASKPATTIRWFKG-NKELKGKSEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHP 256
Query: 936 SFKEPVLLPVTLSVRYPPEVSIS-GYDDNWYIGRSEAT-LNCDVRSKPEPTGYDWSTTSG 1109
+ + L V+Y P+V I Y +A L C+ KP+P W
Sbjct: 257 AVTGNLQTQRYLEVQYKPQVHIQMTYPLQGLTREGDALELTCEAIGKPQPVMVTWVRVDD 316
Query: 1110 VFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
P AV GP L +++++K N T+ C +N VG H++ ++ V + P
Sbjct: 317 EMPQHAVLSGPNLFINNLNKTDNGTYRCEASNIVGKAHSDYMLYVYDPP 365
>ref|XP_003125733.1| PREDICTED: cell adhesion molecule 3-like [Sus scrofa].
Length = 403
Score = 65.9 bits (159), Expect = 9e-11
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 6/236 (2%)
Frame = +3
Query: 570 DATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAET-QEVTLSLEPVPV 746
+ ++++ + + DEG YTC T P T++ + + V+ PQ T + +L +
Sbjct: 124 ELSISISNVALADEGEYTCSIFTMPVRTAKSL--VTVLGIPQKPIITGYKSSLREKDTTT 181
Query: 747 ARCVSAGGRPPARVSWL---SPLDGE-TRESQXXXXXXXXXXXXXRFTLVPLGRADGVKI 914
C S+G +P A+++W L GE TR + F + DG I
Sbjct: 182 LNCQSSGSKPAAQLTWRKGDQELHGEPTRVQEDPNGKTFTVSSSVTFQVTQ--EDDGADI 239
Query: 915 TCRVEHESFK-EPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEPTGYD 1091
C V HES K + V Y P I + G+ + L+C+ R P P Y
Sbjct: 240 VCSVNHESLKGADRSTSQRIEVLYKPTAKIRPDPPHPREGQ-KLLLHCEGRGNPVPQQYL 298
Query: 1092 WSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETPN 1259
W G P + Q LI ++K + T+ CT T+ +G+ A + V P+
Sbjct: 299 WE-KEGSVPPLKMTQDSALIFPFLNKSDSGTYGCTATSNMGSYKAYYTLNVNGEPS 353
>ref|XP_001929212.2| PREDICTED: cell adhesion molecule 3 isoform 1, partial [Sus scrofa].
Length = 402
Score = 64.7 bits (156), Expect = 2e-10
Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 6/233 (2%)
Frame = +3
Query: 570 DATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAET-QEVTLSLEPVPV 746
+ ++++ + + DEG YTC T P T++ + + V+ PQ T + +L +
Sbjct: 96 ELSISISNVALADEGEYTCSIFTMPVRTAKSL--VTVLGIPQKPIITGYKSSLREKDTTT 153
Query: 747 ARCVSAGGRPPARVSWL---SPLDGE-TRESQXXXXXXXXXXXXXRFTLVPLGRADGVKI 914
C S+G +P A+++W L GE TR + F + DG I
Sbjct: 154 LNCQSSGSKPAAQLTWRKGDQELHGEPTRVQEDPNGKTFTVSSSVTFQVTQ--EDDGADI 211
Query: 915 TCRVEHESFK-EPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEPTGYD 1091
C V HES K + V Y P I + G+ + L+C+ R P P Y
Sbjct: 212 VCSVNHESLKGADRSTSQRIEVLYKPTAKIRPDPPHPREGQ-KLLLHCEGRGNPVPQQYL 270
Query: 1092 WSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRE 1250
W G P + Q LI ++K + T+ CT T+ +G+ A + V +
Sbjct: 271 WE-KEGSVPPLKMTQDSALIFPFLNKSDSGTYGCTATSNMGSYKAYYTLNVND 322
>ref|XP_003127121.1| PREDICTED: kin of IRRE-like protein 2 isoform 2 [Sus scrofa].
Length = 583
Score = 56.6 bits (135), Expect = 5e-08
Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 8/234 (3%)
Frame = +3
Query: 579 LALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEP-VPV-AR 752
L +R + +ED+ +Y C+ G L V+ P+ ++SL +P
Sbjct: 36 LHIRPVELEDQASYECQATQ--AGLRSRPAQLHVLVPPEAPQVLGGPSVSLVAGIPANLT 93
Query: 753 CVSAG-GRPPARVSWLSP---LDGETRESQXXXXXXXXXXXXXR--FTLVPLGRADGVKI 914
C S G P + W LDG T +L P DG +
Sbjct: 94 CRSRGDAHPTPELLWFRDGVQLDGATFHQTLLKEGTTGSTGSVESILSLTPSSHDDGATL 153
Query: 915 TCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEPTGYDW 1094
CR ++ +TLS++YPP V++S G + T C ++P TGY W
Sbjct: 154 VCRARSQALPVGKDTAITLSLQYPPVVTLSAEPQRVQEG-EKVTFLCQATAQPPVTGYRW 212
Query: 1095 STTSGVFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
+ G P A+GP L V + C V+NAVG+ + + V+ P
Sbjct: 213 A--KGGSPVLG-ARGPMLEVVADASFLTEPVSCEVSNAVGSANRSTALDVQFGP 263
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,047,381
Number of extensions: 1381110
Number of successful extensions: 7796
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 7662
Number of HSP's successfully gapped: 12
Length of query: 720
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 614
Effective length of database: 8,704,850
Effective search space: 5344777900
Effective search space used: 5344777900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013202
(2160 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033016.3| poliovirus receptor-related protein 2 isoform 1... 682 0.0
Alignment gi|NP_001153196.1| poliovirus receptor-related protein 2 isofor... 458 e-129
Alignment gi|NP_081790.1| poliovirus receptor [Mus musculus]. 239 6e-63
Alignment gi|NP_067399.2| poliovirus receptor-related protein 1 precursor... 172 1e-42
Alignment gi|NP_067471.1| poliovirus receptor-related protein 3 isoform b... 149 1e-35
Alignment gi|NP_067472.1| poliovirus receptor-related protein 3 isoform g... 135 1e-31
Alignment gi|NP_067470.1| poliovirus receptor-related protein 3 isoform a... 135 2e-31
Alignment gi|NP_001116152.1| poliovirus receptor-related protein 4 isofor... 105 1e-22
Alignment gi|NP_082169.2| poliovirus receptor-related protein 4 isoform a... 105 1e-22
Alignment gi|NP_061240.3| cell adhesion molecule 1 isoform c [Mus musculu... 80 6e-15
>ref|NP_033016.3| poliovirus receptor-related protein 2 isoform 1 [Mus musculus].
Length = 530
Score = 682 bits (1761), Expect = 0.0
Identities = 347/515 (67%), Positives = 387/515 (75%), Gaps = 3/515 (0%)
Frame = +3
Query: 279 RETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFH 458
+ET AQDVRVRV EVRG LG TVELPCHLLPP E RVSQVTW RLD VA FH
Sbjct: 27 QETGAQDVRVRVLPEVRGRLGGTVELPCHLLPPTTE-RVSQVTWQRLD----GTVVAAFH 81
Query: 459 PQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFAT 638
P +G FP ++ K+RLSFV+ + P T ++RDATLA RGL VEDEGNYTCEFAT
Sbjct: 82 PSFGVDFPNSQFSKDRLSFVR------ARPETNADLRDATLAFRGLRVEDEGNYTCEFAT 135
Query: 639 FPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGET 818
FP GT RGVTWLRVIA+P+NHAE QEVT+ + V VARCVS GGRPPAR++W+S L GE
Sbjct: 136 FPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEA 195
Query: 819 RESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVS 998
+++Q R++LVP+GRADGVK+TCRVEHESF+EP+LLPVTLSVRYPPEVS
Sbjct: 196 KDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYPPEVS 255
Query: 999 ISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFN 1178
ISGYDDNWY+GRSEA L CDVRS PEPT YDWSTTSGVFPASAVAQG +L+VHSVD++ N
Sbjct: 256 ISGYDDNWYLGRSEAILTCDVRSNPEPTDYDWSTTSGVFPASAVAQGSQLLVHSVDRMVN 315
Query: 1179 TTFICTVTNAVGTGHAEQVVLVRETPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQ 1358
TTFICT TNAVGTG AEQV+LVRE+P+ LICRQ
Sbjct: 316 TTFICTATNAVGTGRAEQVILVRESPSTAGAGATGGIIGGIIAAIIATAVAGTGILICRQ 375
Query: 1359 QRKEQRLQGAEEEEDLEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHSPLKTPYFDAGA 1538
QRKEQRLQ A+EEE+LEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHSP+KTPYFDAG
Sbjct: 376 QRKEQRLQAADEEEELEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHSPVKTPYFDAGV 435
Query: 1539 PCPEQETPRYHELPTLEERSGPLLLGATSVGSPILVPPGPPAAERVS---XXXXXXXXXX 1709
C +QE PRYHELPTLEERSGPLLLGAT +G +LVPPGP E VS
Sbjct: 436 SCADQEMPRYHELPTLEERSGPLLLGATGLGPSLLVPPGPNVVEGVSLSLEDEEEDDEEE 495
Query: 1710 XXXXKINPIYDALSYSSPSDSYQGKGFVMSRAMYV 1814
KINPIYDALSY SPSDSYQ K F +SRAMYV
Sbjct: 496 DFLDKINPIYDALSYPSPSDSYQSKDFFVSRAMYV 530
>ref|NP_001153196.1| poliovirus receptor-related protein 2 isoform 2 [Mus musculus].
Length = 467
Score = 458 bits (1179), Expect = e-129
Identities = 227/326 (69%), Positives = 259/326 (79%)
Frame = +3
Query: 279 RETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFH 458
+ET AQDVRVRV EVRG LG TVELPCHLLPP E RVSQVTW RLD VA FH
Sbjct: 27 QETGAQDVRVRVLPEVRGRLGGTVELPCHLLPPTTE-RVSQVTWQRLD----GTVVAAFH 81
Query: 459 PQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFAT 638
P +G FP ++ K+RLSFV+ + P T ++RDATLA RGL VEDEGNYTCEFAT
Sbjct: 82 PSFGVDFPNSQFSKDRLSFVR------ARPETNADLRDATLAFRGLRVEDEGNYTCEFAT 135
Query: 639 FPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGET 818
FP GT RGVTWLRVIA+P+NHAE QEVT+ + V VARCVS GGRPPAR++W+S L GE
Sbjct: 136 FPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEA 195
Query: 819 RESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVS 998
+++Q R++LVP+GRADGVK+TCRVEHESF+EP+LLPVTLSVRYPPEVS
Sbjct: 196 KDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYPPEVS 255
Query: 999 ISGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFN 1178
ISGYDDNWY+GRSEA L CDVRS PEPT YDWSTTSGVFPASAVAQG +L+VHSVD++ N
Sbjct: 256 ISGYDDNWYLGRSEAILTCDVRSNPEPTDYDWSTTSGVFPASAVAQGSQLLVHSVDRMVN 315
Query: 1179 TTFICTVTNAVGTGHAEQVVLVRETP 1256
TTFICT TNAVGTG AEQV+LVR+TP
Sbjct: 316 TTFICTATNAVGTGRAEQVILVRDTP 341
>ref|NP_081790.1| poliovirus receptor [Mus musculus].
Length = 408
Score = 239 bits (610), Expect = 6e-63
Identities = 136/324 (41%), Positives = 188/324 (58%), Gaps = 4/324 (1%)
Frame = +3
Query: 297 DVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPS 476
D+RV V G LG + L C L V ++Q+TW++ D+ + VA+FHP+ GP+
Sbjct: 29 DIRVLVPYNSTGVLGGSTTLHCSLTSNE-NVTITQITWMKKDSGGSHALVAVFHPKKGPN 87
Query: 477 FPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTS 656
ER+ F+ Q ++R+A+LA+ L+VEDEG Y C+ ATFP+G+
Sbjct: 88 IKEP----ERVKFLAAQQ----------DLRNASLAISNLSVEDEGIYECQIATFPRGSR 133
Query: 657 RGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQXX 836
WL+V A P+N AE E + +L VA+C+SA G PP R+SW S ++G RE +
Sbjct: 134 STNAWLKVQARPKNTAEALEPSPTLILQDVAKCISANGHPPGRISWPSNVNGSHREMKEP 193
Query: 837 XXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPE-VSISGYD 1013
++VP +ADG ITC VEHES +E L VTLS YPPE VSISGYD
Sbjct: 194 GSQPGTTTVTSYLSMVPSRQADGKNITCTVEHESLQELDQLLVTLSQPYPPENVSISGYD 253
Query: 1014 DNWYIGRSEATLNCDVRSKPEP--TGYDWSTTSGVFPASAVAQGPKLIVHSV-DKLFNTT 1184
NWY+G + TL C+ SKP P GY+WST +G FP S QG L++ +V D L NT
Sbjct: 254 GNWYVGLTNLTLTCEAHSKPAPDMAGYNWSTNTGDFPNSVKRQGNMLLISTVEDGLNNTV 313
Query: 1185 FICTVTNAVGTGHAEQVVLVRETP 1256
+C VTNA+G+G + ++V+E P
Sbjct: 314 IVCEVTNALGSGQGQVHIIVKEKP 337
>ref|NP_067399.2| poliovirus receptor-related protein 1 precursor [Mus musculus].
Length = 515
Score = 172 bits (436), Expect = 1e-42
Identities = 112/325 (34%), Positives = 156/325 (48%), Gaps = 8/325 (2%)
Frame = +3
Query: 306 VRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPR 485
V+V + G +G V L C P P V+++QVTW + QN+AI++P G S
Sbjct: 33 VQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKASNGS-KQNMAIYNPTMGVSV-- 89
Query: 486 AKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGV 665
P ++R+ F++P D T+ L GL +EDEG Y CEFATFP G
Sbjct: 90 LPPYEKRVEFLRPS------------FIDGTIRLSGLELEDEGMYICEFATFPTGNRESQ 137
Query: 666 TWLRVIAEPQNHAETQEVTLSL-----EPVPVARCVSAGGRPPARVSWLSPLDGETRESQ 830
L V+A+P N E L + V VA C SA G+PP+ VSW + L GE E Q
Sbjct: 138 LNLTVMAKPTNWIEGTRAVLRARKGQDDKVLVATCTSANGKPPSAVSWETRLKGEA-EYQ 196
Query: 831 XXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEH--ESFKEPVLLPVTLSVRYPPEVSIS 1004
R+ LVP A + C V + + F+E + TL+V+Y PEV+I
Sbjct: 197 EIRNPNGTVTVISRYRLVPSREAHRQSLACIVNYHLDRFRESL----TLNVQYEPEVTIE 252
Query: 1005 GYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHS-VDKLFNT 1181
G+D NWY+ R++ L C + P T Y W+T +G P AQ L +
Sbjct: 253 GFDGNWYLQRTDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPITYSLAG 312
Query: 1182 TFICTVTNAVGTGHAEQVVLVRETP 1256
T+IC TN +GT + V + E P
Sbjct: 313 TYICEATNPIGTRSGQVEVNITEFP 337
>ref|NP_067471.1| poliovirus receptor-related protein 3 isoform beta [Mus musculus].
Length = 510
Score = 149 bits (375), Expect = 1e-35
Identities = 106/394 (26%), Positives = 175/394 (44%), Gaps = 12/394 (3%)
Frame = +3
Query: 393 VSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRD 572
++Q++W ++ + Q VA+ HPQYG F G G + D
Sbjct: 86 ITQISWEKIHG-KSTQTVAVHHPQYG--------------FSVQGDYQGRVLFKNYSLND 130
Query: 573 ATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVP--- 743
AT+ L + D G Y C+ TFP G ++ T + V+ EP T+SL P
Sbjct: 131 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEP---------TVSLIKGPDSL 181
Query: 744 --------VARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRA 899
A CV+A G+P A++ W L GE ES ++ L P A
Sbjct: 182 IDGGNETVAAVCVAATGKPVAQIDWEGDL-GEM-ESSTTSFPNETATIVSQYKLFPTRFA 239
Query: 900 DGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEP 1079
G +ITC V+H + ++ + L ++Y PEVS++GYD NW++GR L C+ + P P
Sbjct: 240 RGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP 299
Query: 1080 TGYDWSTTSGVFPASAVAQGPKL-IVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
WS G +P +A L VH + ++ ++C V+N++G ++V+ + + P
Sbjct: 300 FKSVWSRLDGQWPDGLLASDNTLHFVHPLTVNYSGVYVCKVSNSLGQRSDQKVIYISDIP 359
Query: 1257 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQQRKEQRLQGAEEEEDLEGPPSYKPPT 1436
L+ ++++ L ++ ++ PP++KPP
Sbjct: 360 LTQTSSIAVAGAVIGAVLALFIITVFVTVLLTPRKKRPSYL-----DKVIDLPPTHKPP- 413
Query: 1437 PKAKLEEPEMPSQLFTLGASEHSPLKTPYFDAGA 1538
P + P +P Q LG +EH PL+T + + GA
Sbjct: 414 PVYEERIPSLP-QKDLLGQTEHLPLQTQFKEKGA 446
>ref|NP_067472.1| poliovirus receptor-related protein 3 isoform gamma [Mus musculus].
Length = 438
Score = 135 bits (341), Expect = 1e-31
Identities = 96/373 (25%), Positives = 162/373 (43%), Gaps = 12/373 (3%)
Frame = +3
Query: 393 VSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRD 572
++Q++W ++ + Q VA+ HPQYG F G G + D
Sbjct: 86 ITQISWEKIHG-KSTQTVAVHHPQYG--------------FSVQGDYQGRVLFKNYSLND 130
Query: 573 ATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVP--- 743
AT+ L + D G Y C+ TFP G ++ T + V+ EP T+SL P
Sbjct: 131 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEP---------TVSLIKGPDSL 181
Query: 744 --------VARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRA 899
A CV+A G+P A++ W L GE ES ++ L P A
Sbjct: 182 IDGGNETVAAVCVAATGKPVAQIDWEGDL-GEM-ESSTTSFPNETATIVSQYKLFPTRFA 239
Query: 900 DGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEP 1079
G +ITC V+H + ++ + L ++Y PEVS++GYD NW++GR L C+ + P P
Sbjct: 240 RGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP 299
Query: 1080 TGYDWSTTSGVFPASAVAQGPKL-IVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
WS G +P +A L VH + ++ ++C V+N++G ++V+ + + P
Sbjct: 300 FKSVWSRLDGQWPDGLLASDNTLHFVHPLTVNYSGVYVCKVSNSLGQRSDQKVIYISDIP 359
Query: 1257 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQQRKEQRLQGAEEEEDLEGPPSYKPPT 1436
L+ ++++ L ++ ++ PP++KPP
Sbjct: 360 LTQTSSIAVAGAVIGAVLALFIITVFVTVLLTPRKKRPSYL-----DKVIDLPPTHKPP- 413
Query: 1437 PKAKLEEPEMPSQ 1475
P + P +P +
Sbjct: 414 PVYEERIPSLPQK 426
>ref|NP_067470.1| poliovirus receptor-related protein 3 isoform alpha [Mus musculus].
Length = 549
Score = 135 bits (339), Expect = 2e-31
Identities = 86/300 (28%), Positives = 138/300 (46%), Gaps = 12/300 (4%)
Frame = +3
Query: 393 VSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRD 572
++Q++W ++ + Q VA+ HPQYG F G G + D
Sbjct: 86 ITQISWEKIHG-KSTQTVAVHHPQYG--------------FSVQGDYQGRVLFKNYSLND 130
Query: 573 ATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVP--- 743
AT+ L + D G Y C+ TFP G ++ T + V+ EP T+SL P
Sbjct: 131 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEP---------TVSLIKGPDSL 181
Query: 744 --------VARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRA 899
A CV+A G+P A++ W L GE ES ++ L P A
Sbjct: 182 IDGGNETVAAVCVAATGKPVAQIDWEGDL-GEM-ESSTTSFPNETATIVSQYKLFPTRFA 239
Query: 900 DGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEP 1079
G +ITC V+H + ++ + L ++Y PEVS++GYD NW++GR L C+ + P P
Sbjct: 240 RGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP 299
Query: 1080 TGYDWSTTSGVFPASAVAQGPKL-IVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
WS G +P +A L VH + ++ ++C V+N++G ++V+ + + P
Sbjct: 300 FKSVWSRLDGQWPDGLLASDNTLHFVHPLTVNYSGVYVCKVSNSLGQRSDQKVIYISDPP 359
>ref|NP_001116152.1| poliovirus receptor-related protein 4 isoform b [Mus musculus].
Length = 483
Score = 105 bits (263), Expect = 1e-22
Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 2/305 (0%)
Frame = +3
Query: 336 LGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSF 515
LG +LPC P+ +V QV W R+D E + +A+ H +YG A ++R+
Sbjct: 43 LGQDAKLPCFYRGD-PDEQVGQVAWARVDPNEGIRELALLHSKYGLHVNPAY--EDRVEQ 99
Query: 516 VKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQ 695
P + + D ++ LR DEG Y C +TFP G+ + LRV+ P
Sbjct: 100 PPPPR----------DPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARMRLRVLVPPL 149
Query: 696 NHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRF 875
+ + +A +A G P V+W + + G +S F
Sbjct: 150 PSLNPGPPLEEGQGLTLAASCTAEGSPAPSVTWDTEVKG--TQSSRSFTHPRSAAVTSEF 207
Query: 876 TLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDN--WYIGRSEATL 1049
LVP +G +TC V H + + TL V + E S+ G +D W +GR ATL
Sbjct: 208 HLVPSRSMNGQPLTCVVSHPGLLQDRRITHTLQVAFLAEASVRGLEDQNLWQVGREGATL 267
Query: 1050 NCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAE 1229
C +P P Y+W+ G P+ +G L + + ++C V+N + + ++
Sbjct: 268 KCLSEGQPPPK-YNWTRLDGPLPSGVRVKGDTLGFPPLTTEHSGVYVCHVSNELSSRDSQ 326
Query: 1230 QVVLV 1244
V V
Sbjct: 327 VTVEV 331
>ref|NP_082169.2| poliovirus receptor-related protein 4 isoform a [Mus musculus].
Length = 508
Score = 105 bits (263), Expect = 1e-22
Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 2/305 (0%)
Frame = +3
Query: 336 LGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSF 515
LG +LPC P+ +V QV W R+D E + +A+ H +YG A ++R+
Sbjct: 43 LGQDAKLPCFYRGD-PDEQVGQVAWARVDPNEGIRELALLHSKYGLHVNPAY--EDRVEQ 99
Query: 516 VKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQ 695
P + + D ++ LR DEG Y C +TFP G+ + LRV+ P
Sbjct: 100 PPPPR----------DPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARMRLRVLVPPL 149
Query: 696 NHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRF 875
+ + +A +A G P V+W + + G +S F
Sbjct: 150 PSLNPGPPLEEGQGLTLAASCTAEGSPAPSVTWDTEVKG--TQSSRSFTHPRSAAVTSEF 207
Query: 876 TLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDN--WYIGRSEATL 1049
LVP +G +TC V H + + TL V + E S+ G +D W +GR ATL
Sbjct: 208 HLVPSRSMNGQPLTCVVSHPGLLQDRRITHTLQVAFLAEASVRGLEDQNLWQVGREGATL 267
Query: 1050 NCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAE 1229
C +P P Y+W+ G P+ +G L + + ++C V+N + + ++
Sbjct: 268 KCLSEGQPPPK-YNWTRLDGPLPSGVRVKGDTLGFPPLTTEHSGVYVCHVSNELSSRDSQ 326
Query: 1230 QVVLV 1244
V V
Sbjct: 327 VTVEV 331
>ref|NP_061240.3| cell adhesion molecule 1 isoform c [Mus musculus].
Length = 445
Score = 80.1 bits (196), Expect = 6e-15
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 3/229 (1%)
Frame = +3
Query: 579 LALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPV-ARC 755
++L +++ DEG Y C+ T P S T + V+ P+N + ++E + C
Sbjct: 112 VSLTNVSISDEGRYFCQLYTDPPQES--YTTITVLVPPRNLMIDIQKDTAVEGEEIEVNC 169
Query: 756 VSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHE 935
+ +P + W + E + + L DGV + C+VEH
Sbjct: 170 TAMASKPATTIRWFKG-NKELKGKSEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHP 228
Query: 936 SFKEPVLLPVTLSVRYPPEVSIS-GYDDNWYIGRSEA-TLNCDVRSKPEPTGYDWSTTSG 1109
+ + L V+Y P+V I Y +A L C+ KP+P W
Sbjct: 229 AVTGNLQTQRYLEVQYKPQVHIQMTYPLQGLTREGDAFELTCEAIGKPQPVMVTWVRVDD 288
Query: 1110 VFPASAVAQGPKLIVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
P AV GP L +++++K N T+ C +N VG H++ ++ V + P
Sbjct: 289 EMPQHAVLSGPNLFINNLNKTDNGTYRCEASNIVGKAHSDYMLYVYDPP 337
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 64,540,418
Number of extensions: 1736334
Number of successful extensions: 9421
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 9244
Number of HSP's successfully gapped: 18
Length of query: 720
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 611
Effective length of database: 12,343,635
Effective search space: 7541960985
Effective search space used: 7541960985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013202
(2160 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001036189.1| poliovirus receptor-related protein 2 isofor... 715 0.0
Alignment gi|NP_002847.1| poliovirus receptor-related protein 2 isoform a... 474 e-133
Alignment gi|NP_001129242.1| poliovirus receptor isoform delta [Homo sapi... 313 3e-85
Alignment gi|NP_001129240.1| poliovirus receptor isoform beta [Homo sapie... 313 3e-85
Alignment gi|NP_006496.3| poliovirus receptor isoform alpha [Homo sapiens]. 313 3e-85
Alignment gi|NP_001129241.1| poliovirus receptor isoform gamma [Homo sapi... 311 2e-84
Alignment gi|NP_976030.1| poliovirus receptor-related protein 1 isoform 2... 177 3e-44
Alignment gi|NP_002846.3| poliovirus receptor-related protein 1 isoform 1... 175 1e-43
Alignment gi|NP_976031.1| poliovirus receptor-related protein 1 isoform 3... 172 1e-42
Alignment gi|NP_001230217.1| poliovirus receptor-related protein 3 isofor... 144 3e-34
>ref|NP_001036189.1| poliovirus receptor-related protein 2 isoform delta precursor [Homo
sapiens].
Length = 538
Score = 715 bits (1846), Expect = 0.0
Identities = 359/513 (69%), Positives = 394/513 (76%), Gaps = 2/513 (0%)
Frame = +3
Query: 282 ETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHP 461
ET AQDVRV+V EVRG LG TVELPCHLLPP P + +S VTW R D P ++QNVA FHP
Sbjct: 28 ETGAQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHP 87
Query: 462 QYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATF 641
+ GPSFP KPG ERLSFV QSTG TE E++DATLAL GLTVEDEGNYTCEFATF
Sbjct: 88 KMGPSFPSPKPGSERLSFVSAKQSTGQD--TEAELQDATLALHGLTVEDEGNYTCEFATF 145
Query: 642 PQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETR 821
P+G+ RG+TWLRVIA+P+N AE Q+VT S +P VA C+S GRPPAR+SWLS LD E +
Sbjct: 146 PKGSVRGMTWLRVIAKPKNQAEAQKVTFSQDPTTVALCISKEGRPPARISWLSSLDWEAK 205
Query: 822 ESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSI 1001
E+Q RFTLVP GRADGV +TC+VEHESF+EP L+PVTLSVRYPPEVSI
Sbjct: 206 ETQVSGTLAGTVTVTSRFTLVPSGRADGVTVTCKVEHESFEEPALIPVTLSVRYPPEVSI 265
Query: 1002 SGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNT 1181
SGYDDNWY+GR++ATL+CDVRS PEPTGYDWSTTSG FP SAVAQG +L++H+VD LFNT
Sbjct: 266 SGYDDNWYLGRTDATLSCDVRSNPEPTGYDWSTTSGTFPTSAVAQGSQLVIHAVDSLFNT 325
Query: 1182 TFICTVTNAVGTGHAEQVVLVRETPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQQ 1361
TF+CTVTNAVG G AEQV+ VRETPN LICRQQ
Sbjct: 326 TFVCTVTNAVGMGRAEQVIFVRETPNTAGAGATGGIIGGIIAAIIATAVAATGILICRQQ 385
Query: 1362 RKEQRLQGAEEEEDLEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHSPLKTPYFDAGAP 1541
RKEQ LQGAEE+EDLEGPPSYKPPTPKAKLE EMPSQLFTLGASEHSPLKTPYFDAGA
Sbjct: 386 RKEQTLQGAEEDEDLEGPPSYKPPTPKAKLEAQEMPSQLFTLGASEHSPLKTPYFDAGAS 445
Query: 1542 CPEQETPRYHELPTLEERSGPLLLGATSVGSPILVPPGPPAAERVS--XXXXXXXXXXXX 1715
C EQE PRYHELPTLEERSGPL GATS+GSPI VPPGPPA E VS
Sbjct: 446 CTEQEMPRYHELPTLEERSGPLHPGATSLGSPIPVPPGPPAVEDVSLDLEDEEGEEEEEY 505
Query: 1716 XXKINPIYDALSYSSPSDSYQGKGFVMSRAMYV 1814
KINPIYDALSYSSPSDSYQGKGFVMSRAMYV
Sbjct: 506 LDKINPIYDALSYSSPSDSYQGKGFVMSRAMYV 538
>ref|NP_002847.1| poliovirus receptor-related protein 2 isoform alpha precursor [Homo
sapiens].
Length = 479
Score = 474 bits (1219), Expect = e-133
Identities = 228/325 (70%), Positives = 261/325 (80%)
Frame = +3
Query: 282 ETRAQDVRVRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHP 461
ET AQDVRV+V EVRG LG TVELPCHLLPP P + +S VTW R D P ++QNVA FHP
Sbjct: 28 ETGAQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHP 87
Query: 462 QYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATF 641
+ GPSFP KPG ERLSFV QSTG TE E++DATLAL GLTVEDEGNYTCEFATF
Sbjct: 88 KMGPSFPSPKPGSERLSFVSAKQSTGQD--TEAELQDATLALHGLTVEDEGNYTCEFATF 145
Query: 642 PQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETR 821
P+G+ RG+TWLRVIA+P+N AE Q+VT S +P VA C+S GRPPAR+SWLS LD E +
Sbjct: 146 PKGSVRGMTWLRVIAKPKNQAEAQKVTFSQDPTTVALCISKEGRPPARISWLSSLDWEAK 205
Query: 822 ESQXXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSI 1001
E+Q RFTLVP GRADGV +TC+VEHESF+EP L+PVTLSVRYPPEVSI
Sbjct: 206 ETQVSGTLAGTVTVTSRFTLVPSGRADGVTVTCKVEHESFEEPALIPVTLSVRYPPEVSI 265
Query: 1002 SGYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNT 1181
SGYDDNWY+GR++ATL+CDVRS PEPTGYDWSTTSG FP SAVAQG +L++H+VD LFNT
Sbjct: 266 SGYDDNWYLGRTDATLSCDVRSNPEPTGYDWSTTSGTFPTSAVAQGSQLVIHAVDSLFNT 325
Query: 1182 TFICTVTNAVGTGHAEQVVLVRETP 1256
TF+CTVTNAVG G AEQV+ VRETP
Sbjct: 326 TFVCTVTNAVGMGRAEQVIFVRETP 350
>ref|NP_001129242.1| poliovirus receptor isoform delta [Homo sapiens].
Length = 392
Score = 313 bits (803), Expect = 3e-85
Identities = 167/321 (52%), Positives = 209/321 (65%), Gaps = 1/321 (0%)
Frame = +3
Query: 297 DVRVRVAAEVRGHLGDTVELPCHLLPPAPEV-RVSQVTWLRLDTPEDNQNVAIFHPQYGP 473
DV V+ +V G LGD+V LPC+L P EV VSQ+TW R ++ ++A+FH GP
Sbjct: 28 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHG---ESGSMAVFHQTQGP 84
Query: 474 SFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGT 653
S+ +K RL FV E+R+A+L + GL VEDEGNYTC F TFPQG+
Sbjct: 85 SYSESK----RLEFVAARLGA--------ELRNASLRMFGLRVEDEGNYTCLFVTFPQGS 132
Query: 654 SRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQX 833
WLRV+A+PQN AE Q+V L+ EPVP+ARCVS GGRPPA+++W S L G SQ
Sbjct: 133 RSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV 192
Query: 834 XXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYD 1013
+ LVP + DG +TC+VEHESF++P LL V L+V YPPEVSISGYD
Sbjct: 193 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYD 252
Query: 1014 DNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFIC 1193
+NWY+G++EATL CD RS PEPTGY+WSTT G P AVAQG +L++ VDK NTT IC
Sbjct: 253 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLIC 312
Query: 1194 TVTNAVGTGHAEQVVLVRETP 1256
VTNA+G AE V V+E P
Sbjct: 313 NVTNALGARQAELTVQVKEGP 333
>ref|NP_001129240.1| poliovirus receptor isoform beta [Homo sapiens].
Length = 372
Score = 313 bits (803), Expect = 3e-85
Identities = 167/321 (52%), Positives = 209/321 (65%), Gaps = 1/321 (0%)
Frame = +3
Query: 297 DVRVRVAAEVRGHLGDTVELPCHLLPPAPEV-RVSQVTWLRLDTPEDNQNVAIFHPQYGP 473
DV V+ +V G LGD+V LPC+L P EV VSQ+TW R ++ ++A+FH GP
Sbjct: 28 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHG---ESGSMAVFHQTQGP 84
Query: 474 SFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGT 653
S+ +K RL FV E+R+A+L + GL VEDEGNYTC F TFPQG+
Sbjct: 85 SYSESK----RLEFVAARLGA--------ELRNASLRMFGLRVEDEGNYTCLFVTFPQGS 132
Query: 654 SRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQX 833
WLRV+A+PQN AE Q+V L+ EPVP+ARCVS GGRPPA+++W S L G SQ
Sbjct: 133 RSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV 192
Query: 834 XXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYD 1013
+ LVP + DG +TC+VEHESF++P LL V L+V YPPEVSISGYD
Sbjct: 193 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYD 252
Query: 1014 DNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFIC 1193
+NWY+G++EATL CD RS PEPTGY+WSTT G P AVAQG +L++ VDK NTT IC
Sbjct: 253 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLIC 312
Query: 1194 TVTNAVGTGHAEQVVLVRETP 1256
VTNA+G AE V V+E P
Sbjct: 313 NVTNALGARQAELTVQVKEGP 333
>ref|NP_006496.3| poliovirus receptor isoform alpha [Homo sapiens].
Length = 417
Score = 313 bits (803), Expect = 3e-85
Identities = 167/321 (52%), Positives = 209/321 (65%), Gaps = 1/321 (0%)
Frame = +3
Query: 297 DVRVRVAAEVRGHLGDTVELPCHLLPPAPEV-RVSQVTWLRLDTPEDNQNVAIFHPQYGP 473
DV V+ +V G LGD+V LPC+L P EV VSQ+TW R ++ ++A+FH GP
Sbjct: 28 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHG---ESGSMAVFHQTQGP 84
Query: 474 SFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGT 653
S+ +K RL FV E+R+A+L + GL VEDEGNYTC F TFPQG+
Sbjct: 85 SYSESK----RLEFVAARLGA--------ELRNASLRMFGLRVEDEGNYTCLFVTFPQGS 132
Query: 654 SRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQX 833
WLRV+A+PQN AE Q+V L+ EPVP+ARCVS GGRPPA+++W S L G SQ
Sbjct: 133 RSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV 192
Query: 834 XXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYD 1013
+ LVP + DG +TC+VEHESF++P LL V L+V YPPEVSISGYD
Sbjct: 193 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYD 252
Query: 1014 DNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFIC 1193
+NWY+G++EATL CD RS PEPTGY+WSTT G P AVAQG +L++ VDK NTT IC
Sbjct: 253 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLIC 312
Query: 1194 TVTNAVGTGHAEQVVLVRETP 1256
VTNA+G AE V V+E P
Sbjct: 313 NVTNALGARQAELTVQVKEGP 333
>ref|NP_001129241.1| poliovirus receptor isoform gamma [Homo sapiens].
Length = 364
Score = 311 bits (796), Expect = 2e-84
Identities = 166/320 (51%), Positives = 208/320 (65%), Gaps = 1/320 (0%)
Frame = +3
Query: 297 DVRVRVAAEVRGHLGDTVELPCHLLPPAPEV-RVSQVTWLRLDTPEDNQNVAIFHPQYGP 473
DV V+ +V G LGD+V LPC+L P EV VSQ+TW R ++ ++A+FH GP
Sbjct: 28 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHG---ESGSMAVFHQTQGP 84
Query: 474 SFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGT 653
S+ +K RL FV E+R+A+L + GL VEDEGNYTC F TFPQG+
Sbjct: 85 SYSESK----RLEFVAARLGA--------ELRNASLRMFGLRVEDEGNYTCLFVTFPQGS 132
Query: 654 SRGVTWLRVIAEPQNHAETQEVTLSLEPVPVARCVSAGGRPPARVSWLSPLDGETRESQX 833
WLRV+A+PQN AE Q+V L+ EPVP+ARCVS GGRPPA+++W S L G SQ
Sbjct: 133 RSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV 192
Query: 834 XXXXXXXXXXXXRFTLVPLGRADGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYD 1013
+ LVP + DG +TC+VEHESF++P LL V L+V YPPEVSISGYD
Sbjct: 193 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYD 252
Query: 1014 DNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHSVDKLFNTTFIC 1193
+NWY+G++EATL CD RS PEPTGY+WSTT G P AVAQG +L++ VDK NTT IC
Sbjct: 253 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLIC 312
Query: 1194 TVTNAVGTGHAEQVVLVRET 1253
VTNA+G AE V V+ T
Sbjct: 313 NVTNALGARQAELTVQVKGT 332
>ref|NP_976030.1| poliovirus receptor-related protein 1 isoform 2 precursor [Homo
sapiens].
Length = 458
Score = 177 bits (450), Expect = 3e-44
Identities = 134/439 (30%), Positives = 186/439 (42%), Gaps = 17/439 (3%)
Frame = +3
Query: 306 VRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPR 485
V+V + G +G V L C P P V+++QVTW + T QNVAI++P G S
Sbjct: 33 VQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQK-STNGSKQNVAIYNPSMGVSV-- 89
Query: 486 AKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGV 665
P +ER+ F++P + D T+ L L +EDEG Y CEFATFP G
Sbjct: 90 LAPYRERVEFLRPSFT------------DGTIRLSRLELEDEGVYICEFATFPTGNRESQ 137
Query: 666 TWLRVIAEPQNHAETQEVTLSL-----EPVPVARCVSAGGRPPARVSWLSPLDGETRESQ 830
L V+A+P N E + L + V VA C SA G+PP+ VSW + L GE E Q
Sbjct: 138 LNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA-EYQ 196
Query: 831 XXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEH--ESFKEPVLLPVTLSVRYPPEVSIS 1004
R+ LVP A + C V + + FKE + TL+V+Y PEV+I
Sbjct: 197 EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESL----TLNVQYEPEVTIE 252
Query: 1005 GYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHS-VDKLFNT 1181
G+D NWY+ R + L C + P T Y W+T +G P AQ L ++
Sbjct: 253 GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAG 312
Query: 1182 TFICTVTNAVGT--GHAEQVVLVRETPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICR 1355
T+IC TN +GT G E + + P L R
Sbjct: 313 TYICEATNPIGTRSGQVEVNITEKPRPQRGLGSAARLLAGTVAVFLILVAVLTVFFLYNR 372
Query: 1356 QQRKEQRLQGAEEEEDLEGPPSYKPPTPKAKLEEPEMPSQLFTLGASEHS-------PLK 1514
QQ+ GA ++ L P P + + E L + L+
Sbjct: 373 QQKSPPETDGAGTDQPLSQKPEPSPSRQSSLVPEDIQVVHLDPGRQQQQEEEDLQKLSLQ 432
Query: 1515 TPYFDAGAPCPEQETPRYH 1571
PY+D G +P YH
Sbjct: 433 PPYYDLGV------SPSYH 445
>ref|NP_002846.3| poliovirus receptor-related protein 1 isoform 1 precursor [Homo
sapiens].
Length = 517
Score = 175 bits (444), Expect = 1e-43
Identities = 115/325 (35%), Positives = 158/325 (48%), Gaps = 8/325 (2%)
Frame = +3
Query: 306 VRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPR 485
V+V + G +G V L C P P V+++QVTW + T QNVAI++P G S
Sbjct: 33 VQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQK-STNGSKQNVAIYNPSMGVSV-- 89
Query: 486 AKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGV 665
P +ER+ F++P + D T+ L L +EDEG Y CEFATFP G
Sbjct: 90 LAPYRERVEFLRPSFT------------DGTIRLSRLELEDEGVYICEFATFPTGNRESQ 137
Query: 666 TWLRVIAEPQNHAETQEVTLSL-----EPVPVARCVSAGGRPPARVSWLSPLDGETRESQ 830
L V+A+P N E + L + V VA C SA G+PP+ VSW + L GE E Q
Sbjct: 138 LNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA-EYQ 196
Query: 831 XXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEH--ESFKEPVLLPVTLSVRYPPEVSIS 1004
R+ LVP A + C V + + FKE + TL+V+Y PEV+I
Sbjct: 197 EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESL----TLNVQYEPEVTIE 252
Query: 1005 GYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHS-VDKLFNT 1181
G+D NWY+ R + L C + P T Y W+T +G P AQ L ++
Sbjct: 253 GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAG 312
Query: 1182 TFICTVTNAVGTGHAEQVVLVRETP 1256
T+IC TN +GT + V + E P
Sbjct: 313 TYICEATNPIGTRSGQVEVNITEFP 337
>ref|NP_976031.1| poliovirus receptor-related protein 1 isoform 3 precursor [Homo
sapiens].
Length = 352
Score = 172 bits (436), Expect = 1e-42
Identities = 112/312 (35%), Positives = 153/312 (49%), Gaps = 8/312 (2%)
Frame = +3
Query: 306 VRVAAEVRGHLGDTVELPCHLLPPAPEVRVSQVTWLRLDTPEDNQNVAIFHPQYGPSFPR 485
V+V + G +G V L C P P V+++QVTW + T QNVAI++P G S
Sbjct: 33 VQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQK-STNGSKQNVAIYNPSMGVSV-- 89
Query: 486 AKPGKERLSFVKPGQSTGSGPGTEVEVRDATLALRGLTVEDEGNYTCEFATFPQGTSRGV 665
P +ER+ F++P + D T+ L L +EDEG Y CEFATFP G
Sbjct: 90 LAPYRERVEFLRPSFT------------DGTIRLSRLELEDEGVYICEFATFPTGNRESQ 137
Query: 666 TWLRVIAEPQNHAETQEVTLSL-----EPVPVARCVSAGGRPPARVSWLSPLDGETRESQ 830
L V+A+P N E + L + V VA C SA G+PP+ VSW + L GE E Q
Sbjct: 138 LNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA-EYQ 196
Query: 831 XXXXXXXXXXXXXRFTLVPLGRADGVKITCRVEH--ESFKEPVLLPVTLSVRYPPEVSIS 1004
R+ LVP A + C V + + FKE + TL+V+Y PEV+I
Sbjct: 197 EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESL----TLNVQYEPEVTIE 252
Query: 1005 GYDDNWYIGRSEATLNCDVRSKPEPTGYDWSTTSGVFPASAVAQGPKLIVHS-VDKLFNT 1181
G+D NWY+ R + L C + P T Y W+T +G P AQ L ++
Sbjct: 253 GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAG 312
Query: 1182 TFICTVTNAVGT 1217
T+IC TN +GT
Sbjct: 313 TYICEATNPIGT 324
>ref|NP_001230217.1| poliovirus receptor-related protein 3 isoform 3 [Homo sapiens].
Length = 487
Score = 144 bits (363), Expect = 3e-34
Identities = 103/389 (26%), Positives = 171/389 (43%), Gaps = 12/389 (3%)
Frame = +3
Query: 393 VSQVTWLRLDTPEDNQNVAIFHPQYGPSFPRAKPGKERLSFVKPGQSTGSGPGTEVEVRD 572
++Q++W ++ + +Q VA+ HPQYG F G+ G + D
Sbjct: 63 ITQISWEKIHG-KSSQTVAVHHPQYG--------------FSVQGEYQGRVLFKNYSLND 107
Query: 573 ATLALRGLTVEDEGNYTCEFATFPQGTSRGVTWLRVIAEPQNHAETQEVTLSLEPVP--- 743
AT+ L + D G Y C+ TFP G ++ T + V+ EP T+SL P
Sbjct: 108 ATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEP---------TVSLIKGPDSL 158
Query: 744 --------VARCVSAGGRPPARVSWLSPLDGETRESQXXXXXXXXXXXXXRFTLVPLGRA 899
A C++A G+P A + W L GE ES ++ L P A
Sbjct: 159 IDGGNETVAAICIAATGKPVAHIDWEGDL-GEM-ESTTTSFPNETATIISQYKLFPTRFA 216
Query: 900 DGVKITCRVEHESFKEPVLLPVTLSVRYPPEVSISGYDDNWYIGRSEATLNCDVRSKPEP 1079
G +ITC V+H + ++ + L ++Y PEVS++GYD NW++GR L C+ + P P
Sbjct: 217 RGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP 276
Query: 1080 TGYDWSTTSGVFPASAVAQGPKL-IVHSVDKLFNTTFICTVTNAVGTGHAEQVVLVRETP 1256
WS G +P +A L VH + ++ +IC VTN++G ++V+ + + P
Sbjct: 277 FKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDVP 336
Query: 1257 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXLICRQQRKEQRLQGAEEEEDLEGPPSYKPPT 1436
L+ ++++ L ++ ++ PP++KPP
Sbjct: 337 FKQTSSIAVAGAVIGAVLALFIIAIFVTVLLTPRKKRPSYL-----DKVIDLPPTHKPP- 390
Query: 1437 PKAKLEEPEMPSQLFTLGASEHSPLKTPY 1523
P + P +P + L EH PL+T +
Sbjct: 391 PLYEERSPPLPQK--DLFQPEHLPLQTQF 417
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 77,080,113
Number of extensions: 2126100
Number of successful extensions: 11923
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 11699
Number of HSP's successfully gapped: 23
Length of query: 720
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 610
Effective length of database: 14,671,124
Effective search space: 8949385640
Effective search space used: 8949385640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013202
(2160 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1009 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1009 bits (509), Expect = 0.0
Identities = 560/573 (97%), Gaps = 3/573 (0%)
Strand = Plus / Plus
Query: 1551 caggaaacgcctcgataccatgagttgcccaccttggaagagcggtcagggcccctgctg 1610
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47334167 caggaaatgcctcgataccatgagttgcccaccttggaagagcggtcagggcccctgctg 47334226
Query: 1611 cttggggccacaagcgtggggtcccccatcctggtgcccccagggccacctgctgcggag 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47334227 cttggggccacaagcgtggggtcccccatcctggtgcccccagggccacctgctgcggag 47334286
Query: 1671 agggtttccctggatctggaggacgaggaggaggaggaagactatctggacaagatcaac 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47334287 agggtttccctggatctggaggacgaggaggaggaggaagactatctggacaagatcaac 47334346
Query: 1731 cccatctatgatgccctgtcctactccagcccctctgactcctaccagggcaaagggttt 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47334347 cccatctatgatgccctgtcctactccagcccctctgactcctaccagggcaaagggttt 47334406
Query: 1791 gtcatgtctcgggccatgtatgtgtaaactgccatggccctggcctctcgcctctctttt 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47334407 gtcatgtctcgggccatgtatgtgtaaactgccatggccctggcctctcgcctctctttt 47334466
Query: 1851 ttgatccctcagctttctgccagggatgtaggactccttgacctctggccaggccactgt 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47334467 ttgatccctcagctttctgccagggatgtaggactccttgacctctggccaggccactgt 47334526
Query: 1911 cagttaacacacatgcatctcatctgaattctactccggtggctctgctaagacttctaa 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47334527 cagttaacacacatgcatctcatctgaattctactccggtggctctgctaagacttctaa 47334586
Query: 1971 tccctgatctctgacccaaagaaatgggccatgacaatggaaacaccttgactcttgagg 2030
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 47334587 tccatgatctctgacccagagaaatgggccatgacaatggaaacaccttgactcttgagg 47334646
Query: 2031 ggctgggggaaggatgtttct-cacaacctctcccccaaggacccctaaaactgggaccc 2089
|||||||| | | |||||||| ||||||||||| ||||||||||||||| |||| || ||
Sbjct: 47334647 ggctggggaaggtatgtttctgcacaacctctcacccaaggacccctaagactgtga-cc 47334705
Query: 2090 ttaaatcatacctcctcatgtctcaccatctcc 2122
||| ||||||||| |||||||||||||||||||
Sbjct: 47334706 ttagatcatacct-ctcatgtctcaccatctcc 47334737
Score = 785 bits (396), Expect = 0.0
Identities = 396/396 (100%)
Strand = Plus / Plus
Query: 289 gagcccaagatgtgcgagttcgggtggcagctgaggtgcggggccacctgggggacaccg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47227822 gagcccaagatgtgcgagttcgggtggcagctgaggtgcggggccacctgggggacaccg 47227881
Query: 349 tagagttgccgtgccacctgctgcccccagcacctgaagtccgagtgtcacaggtgacct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47227882 tagagttgccgtgccacctgctgcccccagcacctgaagtccgagtgtcacaggtgacct 47227941
Query: 409 ggctgcgcctggacacgcccgaggacaaccaaaacgtggccatcttccaccctcagtacg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47227942 ggctgcgcctggacacgcccgaggacaaccaaaacgtggccatcttccaccctcagtacg 47228001
Query: 469 gtcccagcttccctagagcgaagcctggcaaggagcggctgtccttcgtcaaacccgggc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47228002 gtcccagcttccctagagcgaagcctggcaaggagcggctgtccttcgtcaaacccgggc 47228061
Query: 529 agagcactggttccgggccgggaacggaggtggaggtgcgcgatgccacgctggccctcc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47228062 agagcactggttccgggccgggaacggaggtggaggtgcgcgatgccacgctggccctcc 47228121
Query: 589 gggggctgacggtggaggacgagggcaattacacctgcgagtttgccaccttcccccagg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47228122 gggggctgacggtggaggacgagggcaattacacctgcgagtttgccaccttcccccagg 47228181
Query: 649 gcaccagtcggggggtgacctggctcagagttatag 684
||||||||||||||||||||||||||||||||||||
Sbjct: 47228182 gcaccagtcggggggtgacctggctcagagttatag 47228217
Score = 593 bits (299), Expect = e-166
Identities = 299/299 (100%)
Strand = Plus / Plus
Query: 683 agccgagccccagaaccacgccgagacccaggaggtcaccctcagcctggagcccgtccc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47230261 agccgagccccagaaccacgccgagacccaggaggtcaccctcagcctggagcccgtccc 47230320
Query: 743 tgtggcccgctgtgtgtctgcaggtggccggccccccgcccgagtctcctggctctcgcc 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47230321 tgtggcccgctgtgtgtctgcaggtggccggccccccgcccgagtctcctggctctcgcc 47230380
Query: 803 cttggatggggagaccagagagagccaggtgtcagggcccgtgcctggcacagtcaccgt 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47230381 cttggatggggagaccagagagagccaggtgtcagggcccgtgcctggcacagtcaccgt 47230440
Query: 863 caccagccgcttcaccttggtacccttgggccgagcagatggtgtcaagatcacctgcag 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47230441 caccagccgcttcaccttggtacccttgggccgagcagatggtgtcaagatcacctgcag 47230500
Query: 923 agtggagcacgagagcttcaaggagcctgtcctgctgcctgtgaccctctctgtgcgct 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47230501 agtggagcacgagagcttcaaggagcctgtcctgctgcctgtgaccctctctgtgcgct 47230559
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 2 agaaagaagctaggaaccggggggcaacgagctggaagagccaggcagcgagagccaagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47217329 agaaagaagctaggaaccggggggcaacgagctggaagagccaggcagcgagagccaagc 47217388
Query: 62 cgggagaagagagcgcggcaggaaccggccgggagccagagccacccaggcacctggtcg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47217389 cgggagaagagagcgcggcaggaaccggccgggagccagagccacccaggcacctggtcg 47217448
Query: 122 tcctctcaaccgattggcgctcgcagagtggccctcag 159
||||||||||||||||||||||||||||||||||||||
Sbjct: 47217449 tcctctcaaccgattggcgctcgcagagtggccctcag 47217486
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 1247 agagacgcccaacacagcaggcgcaggggccacaggtggcatcattgggggcatcattgc 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47251590 agagacgcccaacacagcaggcgcaggggccacaggtggcatcattgggggcatcattgc 47251649
Query: 1307 tgccatcattgctactgctgtggccgccacgggcatcctcatctgtcggcagcagcggaa 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47251650 tgccatcattgctactgctgtggccgccacgggcatcctcatctgtcggcagcagcggaa 47251709
Query: 1367 ggagcagaggctgcagggggctgaggaggaggagga 1402
||||||||||||||||||||||||||||||||||||
Sbjct: 47251710 ggagcagaggctgcagggggctgaggaggaggagga 47251745
Score = 280 bits (141), Expect = 3e-72
Identities = 147/149 (98%)
Strand = Plus / Plus
Query: 1100 gacctcgggcgtcttcccggcgtcagcagtcgcccagggccctaagctgatcgtccactc 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47232478 gacctcgggcgtcttcccggcgtcagcagtcgcccagggccctaagctgatcgtccactc 47232537
Query: 1160 ggtggacaagctgttcaacacgaccttcatctgcacggtcaccaacgccgtgggcaccgg 1219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47232538 agtggacaagctgttcaacacgaccttcatctgcacggtcaccaacgccgtgggcaccgg 47232597
Query: 1220 ccatgctgagcaagtggtcctcgttcgag 1248
|||||| ||||||||||||||||||||||
Sbjct: 47232598 ccatgccgagcaagtggtcctcgttcgag 47232626
Score = 236 bits (119), Expect = 4e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 982 acccccctgaggtctccatatctggctatgatgacaactggtacatcggccgtagcgagg 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47231967 acccccctgaggtctccatatctggctatgatgacaactggtacatcggccgtagcgagg 47232026
Query: 1042 ccactctgaactgtgacgttcgcagcaaaccagagcccacaggctacgactggagcacg 1100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47232027 ccactctgaactgtgacgttcgcagcaaaccagagcccacaggctacgactggagcacg 47232085
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1466 gccttcccagctcttcacgctgggggcctcggagcacagcccgctcaagactccctactt 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47256057 gccttcccagctcttcacgctgggggcctcggagcacagcccgctcaagactccctactt 47256116
Query: 1526 tgatgctggcgccccatgccctgaacagg 1554
|||||||||||||||||||||||||||||
Sbjct: 47256117 tgatgctggcgccccatgccctgaacagg 47256145
Score = 149 bits (75), Expect = 7e-33
Identities = 108/119 (90%)
Strand = Plus / Minus
Query: 982 acccccctgaggtctccatatctggctatgatgacaactggtacatcggccgtagcgagg 1041
||||||| ||||||||||| |||||||| ||||||||||||||| ||||||| || ||||
Sbjct: 47029758 accccccagaggtctccatctctggctacgatgacaactggtacctcggccgcagtgagg 47029699
Query: 1042 ccactctgaactgtgacgttcgcagcaaaccagagcccacaggctacgactggagcacg 1100
|||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 47029698 ccacactgaactgtgacattcgcagcaaaccagagcccacagggtataactggagcacg 47029640
Score = 129 bits (65), Expect = 7e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 225 tcaagattgtcgccgccgacgctgccgctactgccgttgctgctactactgctccgggaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47217552 tcaagattgtcgccgccgacgctgccgctactgccgttgctgctactactgctccgggaa 47217611
Query: 285 acccg 289
|||||
Sbjct: 47217612 acccg 47217616
Score = 127 bits (64), Expect = 3e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1403 cctggaggggcctccctcatacaagccgccgacgcccaaggcgaagctggaggagccaga 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47255854 cctggaggggcctccctcatacaagccgccgacgcccaaggcgaagctggaggagccaga 47255913
Query: 1463 gatg 1466
||||
Sbjct: 47255914 gatg 47255917
Score = 60.0 bits (30), Expect = 5e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 913 tcacctgcagagtggagcacgagagcttcaaggagcctgtcctgctgcctgtgaccct 970
||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct: 47031086 tcacctgcaaagtggagcacgagagctttgaggagcccatggtgctgcctgtgaccct 47031029
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,002,032
Number of extensions: 890
Number of successful extensions: 890
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 888
Number of HSP's successfully gapped: 12
Length of query: 2160
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2138
Effective length of database: 2,808,408,574
Effective search space: 6004377531212
Effective search space used: 6004377531212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)