Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013203
(1112 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544103.1| PREDICTED: similar to armadillo repeat-containi... 551 e-157
Alignment gi|XP_858361.1| PREDICTED: similar to armadillo repeat-containi... 403 e-112
>ref|XP_544103.1| PREDICTED: similar to armadillo repeat-containing protein isoform 1
[Canis familiaris].
Length = 282
Score = 551 bits (1421), Expect = e-157
Identities = 281/282 (99%), Positives = 282/282 (100%)
Frame = +2
Query: 257 MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 436
MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL
Sbjct: 1 MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 60
Query: 437 LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDS 616
LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSS+MADGDS
Sbjct: 61 LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSSMADGDS 120
Query: 617 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 796
FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV
Sbjct: 121 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 180
Query: 797 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY 976
QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY
Sbjct: 181 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY 240
Query: 977 LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW 1102
LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW
Sbjct: 241 LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW 282
>ref|XP_858361.1| PREDICTED: similar to armadillo repeat-containing protein isoform 2
[Canis familiaris].
Length = 207
Score = 403 bits (1036), Expect = e-112
Identities = 206/207 (99%), Positives = 207/207 (100%)
Frame = +2
Query: 482 MKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDSFNEMNSRRRKAQFFL 661
MKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSS+MADGDSFNEMNSRRRKAQFFL
Sbjct: 1 MKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSSMADGDSFNEMNSRRRKAQFFL 60
Query: 662 GTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEA 841
GTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEA
Sbjct: 61 GTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEA 120
Query: 842 LASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDYLPEDESPTKEQDKAV 1021
LASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDYLPEDESPTKEQDKAV
Sbjct: 121 LASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDYLPEDESPTKEQDKAV 180
Query: 1022 SRVGSHPEGGASWLSTAANFLSRSFYW 1102
SRVGSHPEGGASWLSTAANFLSRSFYW
Sbjct: 181 SRVGSHPEGGASWLSTAANFLSRSFYW 207
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,989,309
Number of extensions: 1213432
Number of successful extensions: 3801
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3797
Number of HSP's successfully gapped: 2
Length of query: 370
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 266
Effective length of database: 15,407,560
Effective search space: 4098410960
Effective search space used: 4098410960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013203
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013203
(1112 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015594.2| armadillo repeat-containing protein 1 [Bos t... 552 e-157
>ref|NP_001015594.2| armadillo repeat-containing protein 1 [Bos taurus].
Length = 282
Score = 552 bits (1422), Expect = e-157
Identities = 281/282 (99%), Positives = 282/282 (100%)
Frame = +2
Query: 257 MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 436
MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL
Sbjct: 1 MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 60
Query: 437 LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDS 616
LALRYLAECRANREKMKGELGMMLSLQNVIQK+TTPGETKLLASEIYDILQSSNMADGDS
Sbjct: 61 LALRYLAECRANREKMKGELGMMLSLQNVIQKSTTPGETKLLASEIYDILQSSNMADGDS 120
Query: 617 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 796
FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV
Sbjct: 121 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 180
Query: 797 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY 976
QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY
Sbjct: 181 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY 240
Query: 977 LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW 1102
LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW
Sbjct: 241 LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW 282
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,068,977
Number of extensions: 1175588
Number of successful extensions: 3579
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3572
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,240,222
Effective search space: 3787899052
Effective search space used: 3787899052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013203
(1112 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177125.1| armadillo repeat-containing protein 1 [Sus s... 552 e-157
>ref|NP_001177125.1| armadillo repeat-containing protein 1 [Sus scrofa].
Length = 282
Score = 552 bits (1423), Expect = e-157
Identities = 281/282 (99%), Positives = 282/282 (100%)
Frame = +2
Query: 257 MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 436
MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL
Sbjct: 1 MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 60
Query: 437 LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDS 616
LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDS
Sbjct: 61 LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDS 120
Query: 617 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 796
FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV
Sbjct: 121 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 180
Query: 797 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY 976
QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY
Sbjct: 181 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY 240
Query: 977 LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW 1102
LPEDESPTKEQDKAVSRVGSHPEGGA+WLSTAANFLSRSFYW
Sbjct: 241 LPEDESPTKEQDKAVSRVGSHPEGGANWLSTAANFLSRSFYW 282
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,711,984
Number of extensions: 754569
Number of successful extensions: 2276
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2276
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,854,232
Effective search space: 2390642640
Effective search space used: 2390642640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013203
(1112 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083116.1| armadillo repeat-containing protein 1 [Mus musc... 549 e-156
Alignment gi|XP_914188.3| PREDICTED: armadillo repeat-containing protein ... 248 8e-66
>ref|NP_083116.1| armadillo repeat-containing protein 1 [Mus musculus].
Length = 282
Score = 549 bits (1415), Expect = e-156
Identities = 279/282 (98%), Positives = 281/282 (99%)
Frame = +2
Query: 257 MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 436
MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL
Sbjct: 1 MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 60
Query: 437 LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDS 616
LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSN+ADGDS
Sbjct: 61 LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNLADGDS 120
Query: 617 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 796
FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV
Sbjct: 121 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 180
Query: 797 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY 976
QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQD PVEVE+NTELPDY
Sbjct: 181 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDAPVEVEENTELPDY 240
Query: 977 LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW 1102
LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW
Sbjct: 241 LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW 282
>ref|XP_914188.3| PREDICTED: armadillo repeat-containing protein 1-like [Mus musculus].
Length = 168
Score = 248 bits (632), Expect = 8e-66
Identities = 125/127 (98%), Positives = 126/127 (99%)
Frame = +2
Query: 722 SRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSE 901
SRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSE
Sbjct: 42 SRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSE 101
Query: 902 SGEEMLVPFQDTPVEVEQNTELPDYLPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANF 1081
SGEEMLVPFQD PVEVE+NTELPDYLPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANF
Sbjct: 102 SGEEMLVPFQDAPVEVEENTELPDYLPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANF 161
Query: 1082 LSRSFYW 1102
LSRSFYW
Sbjct: 162 LSRSFYW 168
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,544,558
Number of extensions: 1005960
Number of successful extensions: 3011
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3009
Number of HSP's successfully gapped: 2
Length of query: 370
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 267
Effective length of database: 12,523,851
Effective search space: 3343868217
Effective search space used: 3343868217
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013203
(1112 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060590.1| armadillo repeat-containing protein 1 [Homo sap... 550 e-157
>ref|NP_060590.1| armadillo repeat-containing protein 1 [Homo sapiens].
Length = 282
Score = 550 bits (1418), Expect = e-157
Identities = 280/282 (99%), Positives = 282/282 (100%)
Frame = +2
Query: 257 MNSSSSTMNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 436
MNSS+STM+EEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL
Sbjct: 1 MNSSTSTMSEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSAL 60
Query: 437 LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDS 616
LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDS
Sbjct: 61 LALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDS 120
Query: 617 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 796
FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV
Sbjct: 121 FNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAV 180
Query: 797 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY 976
QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY
Sbjct: 181 QRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDY 240
Query: 977 LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW 1102
LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW
Sbjct: 241 LPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFLSRSFYW 282
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,192,724
Number of extensions: 1196457
Number of successful extensions: 3497
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3496
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,868,908
Effective search space: 3955129528
Effective search space used: 3955129528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013203
(1112 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1572 0.0
Sscrofa_Chr01 444 e-122
Sscrofa_Chr04 432 e-118
>Sscrofa_Chr09
|| Length = 153670197
Score = 1572 bits (793), Expect = 0.0
Identities = 958/1014 (94%), Gaps = 1/1014 (0%)
Strand = Plus / Plus
Query: 99 cccacgctgaggccgtcttggaaggagggagctgctctgtgcctcccggatacctctacc 158
|||||||||||||||||||||||||||||| |||||| ||||||||| | ||| ||||||
Sbjct: 70135123 cccacgctgaggccgtcttggaaggagggaactgctccgtgcctcccaggtacgtctacc 70135182
Query: 159 tcatccgttggtgtgtccctgatggtgaggcaggctctggattcttagaaccctgaagcg 218
| ||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||| |
Sbjct: 70135183 ttatcggttggtgtggccctgatggtgaggcaggctctggattcctagaacgctgaaggg 70135242
Query: 219 aatttaagaagattttgttcatgtgtctggcatagaagatgaattcttcctcctccacca 278
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70135243 aatttaataagattttgttcatgtgtctggcatagaagatgaattcttcctcctccacca 70135302
Query: 279 tgaacgaagaacccgatgctctctccgtggttaaccagctccgggatttagcagcagatc 338
|||| |||||||||||||||||||| ||||||||||||||| |||||| |||||| |||
Sbjct: 70135303 tgaatgaagaacccgatgctctctcagtggttaaccagctctaggatttggcagcaaatc 70135362
Query: 339 cattaaatcgaagagccattgtccaggatcagggatgtctgcctggccttattttattta 398
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 70135363 cattaaatcgaagagccattgtccaggatcaggtatgtctgcctggccttattttattta 70135422
Query: 399 tggaccatcccaacccccctgttgttcactcagctttgcttgctcttcgatacttggcag 458
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 70135423 aggaccatcccaacccccctgttgttcactcagctttgcttgctctttgatacttggcag 70135482
Query: 459 agtgccgtgctaacagagaaaagatgaaaggagaactgggtatgatgttaagcttgcaaa 518
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 70135483 agtgctgtgctaacagagaaaagatgaaaggagagctgggtatgatgttaagcttgcaaa 70135542
Query: 519 atgttatacaaaagactacaactccaggagaaacaaaactgctggcctctgaaatctatg 578
||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 70135543 atgttatgcagaagatcaaaactccaggagaaacaaaactgctggcctctgaaatctatg 70135602
Query: 579 acattcttcaatcttctaatatggcagatggtgatagtttcaatgaaatgaattcacgtc 638
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 70135603 acattcttcaatcttctaatatggcagatggtgatagcttcaatgaaatgaattcacatt 70135662
Query: 639 gaaggaaagctcagttttttctgggaaccacaaacaaacgtgccaaaacagtggttttgc 698
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 70135663 gaaggaaagctcagttttttctgggaattacaaacaaacatgccaaaacagtggttttgc 70135722
Query: 699 atatagatggtcttgatgatacgtctcggagaaatctatgtgaagaggctttgttaaaaa 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70135723 atatagatggtcttgatgatacgtctcggagaaatctatgtgaagaggctttgttaaaaa 70135782
Query: 759 ttaaaggtgttattagctttacttttcaaatggccgttcagagatgtgtggtgagaatcc 818
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 70135783 ttaaaggtgttattagctttacttttcaaatggccattcagagatatgtggtgagaatct 70135842
Query: 819 gttcagatctgaaagcagaggctttggcatcagcaatagcatcaaccaaggttatgaagg 878
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 70135843 gttcagatctgacagctgtggctttggcatcagcaatagcatcaaccaaggttatgaagg 70135902
Query: 879 ctcagcaagttgtgaaaagtgaaagtggagaagagatgctggtcccattccaagacacac 938
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 70135903 ctcagcaagttgtgaaaagtaaaagtggagaagagaggctggtcccattccaagacacac 70135962
Query: 939 ctgtggaagtagaacagaatacagagctgcccgactacctgcctgaggatgagagtccca 998
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 70135963 ctgtggaagtagaacagaatacagagctgcctgactacctgcctgaggacgagagtccca 70136022
Query: 999 caaaggagcaggacaaagcagtgtcccgggtgggctcccacccagaannnnnnnccagct 1058
||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 70136023 caaaggagcaggacaaagcagtgtcccaggtgggctcccacccagagggtggggccagct 70136082
Query: 1059 ggctgagcacagctgcaaactttttatccagatcgttttactggtgacttcact 1112
||||||||||||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct: 70136083 ggctgagcacagctgcaaa-tttttatccagatggtttaactggtgacttcact 70136135
>Sscrofa_Chr01
|| Length = 315321322
Score = 444 bits (224), Expect = e-122
Identities = 353/400 (88%), Gaps = 15/400 (3%)
Strand = Plus / Minus
Query: 706 tggtcttgatgatacgtctcggagaaatctatgtgaagaggctttgttaaaaattaaagg 765
|||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct: 173822690 tggttttgatgatacgtcttggagagatttatgtgaagaggctttgttaaaaattaaagg 173822631
Query: 766 tgttattagctttacttttcaaatggccgttcagagatgtgtggtgagaatccgttcaga 825
|||||||||||||||||||||||| || ||||||| |||| ||||||
Sbjct: 173822630 tgttattagctttacttttcaaatagctgttcaga--------------atccattcaga 173822585
Query: 826 tctgaaagcagaggctttggcatcagcaatagcatcaaccaaggttatgaaggctcagca 885
|||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct: 173822584 tctgaatgcagaggctttgacatcagcaatagcatcaaccaagtttatgatggctcagca 173822525
Query: 886 agttgtgaaaagtgaaagtggagaagagatgctggtcccattccaagacacacctgtgga 945
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 173822524 agctgtgaaaagtgaaagtggagaagagatgctggtcccattccaagacacgcctgtgga 173822465
Query: 946 agtagaacagaatacagagctgcccgactacctgcctgaggatgagagtcccacaaagga 1005
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 173822464 agtagagcagaacacagagctgcccgactacctgcctgaggatgagagtcccactaagga 173822405
Query: 1006 gcaggacaaagcagtgtcccgggtgggctcccacccagaannnnnnnccagctggctgag 1065
|||||||||||| ||||| ||||||||||||||| ||| ||||||||||| |
Sbjct: 173822404 gcaggacaaagcgatgtcctgggtgggctcccacctggaaggtggagccagctggctg-g 173822346
Query: 1066 cacagctgcaaactttttatccagatcgttttactggtga 1105
|||||||| ||| |||||||||||||| | ||||||||||
Sbjct: 173822345 cacagctgtaaaatttttatccagatcatcttactggtga 173822306
>Sscrofa_Chr04
|| Length = 143465943
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Plus
Query: 1 gaaccggcggaggtgactgggtcatgggagagagtccgtagagcctttccccgccagcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75141894 gaaccggcggaggtgactgggtcatgggagagagtccgtagagcctttccccgccagcgc 75141953
Query: 61 cctcgctctttggctcctggagtcggtgtggtagtcttcccacgctgaggccgtcttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75141954 cctcgctctttggctcctggagtcggtgtggtagtcttcccacgctgaggccgtcttgga 75142013
Query: 121 aggagggagctgctctgtgcctcccggatacctctacctcatccgttggtgtgtccctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75142014 aggagggagctgctctgtgcctcccggatacctctacctcatccgttggtgtgtccctga 75142073
Query: 181 tggtgaggcaggctctggattcttagaaccctgaagcg 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 75142074 tggtgaggcaggctctggattcttagaaccctgaagcg 75142111
Score = 426 bits (215), Expect = e-116
Identities = 222/223 (99%), Gaps = 1/223 (0%)
Strand = Plus / Plus
Query: 218 gaatttaagaagattttgttcatgtgtctggcatagaagatgaattcttcctcctccacc 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75145633 gaatttaagaagattttgttcatgtgtctggcatagaagatgaattcttcctcctccacc 75145692
Query: 278 atgaacgaagaacccgatgctctctccgtggttaaccagctccgggatttagcagcagat 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75145693 atgaacgaagaacccgatgctctctccgtggttaaccagctccgggatttagcagcagat 75145752
Query: 338 ccattaaatcgaagagccattgtccaggatcagggatgtctgcctggccttattttattt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75145753 ccattaaatcgaagagccattgtccaggatcagggatgtctgcctggccttattttattt 75145812
Query: 398 atggaccatcccaacccccctgttgttcactcagctttgcttg 440
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75145813 atggaccatcccaacccccctg-tgttcactcagctttgcttg 75145854
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 532 gactacaactccaggagaaacaaaactgctggcctctgaaatctatgacattcttcaatc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75166074 gactacaactccaggagaaacaaaactgctggcctctgaaatctatgacattcttcaatc 75166133
Query: 592 ttctaatatggcagatggtgatagtttcaatgaaatgaattcacgtcgaaggaaagctca 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75166134 ttctaatatggcagatggtgatagtttcaatgaaatgaattcacgtcgaaggaaagctca 75166193
Query: 652 gttttttctgggaaccacaaacaaacgtgccaaaacagtggttttgcatatagatggtct 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75166194 gttttttctgggaaccacaaacaaacgtgccaaaacagtggttttgcatatagatggtct 75166253
Query: 712 tgatgatacg 721
||||||||||
Sbjct: 75166254 tgatgatacg 75166263
Score = 357 bits (180), Expect = 8e-96
Identities = 194/201 (96%)
Strand = Plus / Plus
Query: 912 agatgctggtcccattccaagacacacctgtggaagtagaacagaatacagagctgcccg 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75172478 agatgctggtcccattccaagacacacctgtggaagtagaacagaatacagagctgcccg 75172537
Query: 972 actacctgcctgaggatgagagtcccacaaaggagcaggacaaagcagtgtcccgggtgg 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75172538 actacctgcctgaggatgagagtcccacaaaggagcaggacaaagcagtgtcccgggtgg 75172597
Query: 1032 gctcccacccagaannnnnnnccagctggctgagcacagctgcaaactttttatccagat 1091
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 75172598 gctcccacccagaagggggggccagctggctgagcacagctgcaaactttttatccagat 75172657
Query: 1092 cgttttactggtgacttcact 1112
|||||||||||||||||||||
Sbjct: 75172658 cgttttactggtgacttcact 75172678
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 721 gtctcggagaaatctatgtgaagaggctttgttaaaaattaaaggtgttattagctttac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75171523 gtctcggagaaatctatgtgaagaggctttgttaaaaattaaaggtgttattagctttac 75171582
Query: 781 ttttcaaatggccgttcagagatgtgtggtgagaatccgttcagatctgaaagcagagg 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75171583 ttttcaaatggccgttcagagatgtgtggtgagaatccgttcagatctgaaagcagagg 75171641
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 440 gctcttcgatacttggcagagtgccgtgctaacagagaaaagatgaaaggagaactgggt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75154569 gctcttcgatacttggcagagtgccgtgctaacagagaaaagatgaaaggagaactgggt 75154628
Query: 500 atgatgttaagcttgcaaaatgttatacaaaag 532
|||||||||||||||||||||||||||||||||
Sbjct: 75154629 atgatgttaagcttgcaaaatgttatacaaaag 75154661
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 837 aggctttggcatcagcaatagcatcaaccaaggttatgaaggctcagcaagttgtgaaaa 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75171725 aggctttggcatcagcaatagcatcaaccaaggttatgaaggctcagcaagttgtgaaaa 75171784
Query: 897 gtgaaagtggagaagag 913
|||||||||||||||||
Sbjct: 75171785 gtgaaagtggagaagag 75171801
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,622,031
Number of extensions: 247
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 11
Length of query: 1112
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1091
Effective length of database: 2,808,413,156
Effective search space: 3063978753196
Effective search space used: 3063978753196
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)