Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013208
(1261 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857695.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
Alignment gi|XP_857655.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
Alignment gi|XP_848864.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
Alignment gi|XP_857252.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
Alignment gi|XP_857212.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
Alignment gi|XP_857166.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
Alignment gi|XP_857082.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
Alignment gi|XP_857039.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
Alignment gi|XP_856998.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
Alignment gi|XP_856957.1| PREDICTED: similar to Polyadenylate-binding pro... 811 0.0
>ref|XP_857695.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 29 [Canis
familiaris].
Length = 636
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_857655.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 28 [Canis
familiaris].
Length = 636
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_848864.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 2 [Canis
familiaris].
Length = 626
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_857252.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 19 [Canis
familiaris].
Length = 638
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_857212.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 18 [Canis
familiaris].
Length = 618
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_857166.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 17 [Canis
familiaris].
Length = 609
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_857082.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 15 [Canis
familiaris].
Length = 601
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
Animal-Genome cDNA 20110601C-013208
Animal-Genome cDNA 20110601C-013208
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013208
(1261 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]. 811 0.0
Alignment gi|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]. 716 0.0
Alignment gi|XP_002692514.1| PREDICTED: polyadenylate-binding protein 1-l... 661 0.0
Alignment gi|XP_882298.3| PREDICTED: polyadenylate-binding protein 1-like... 661 0.0
Alignment gi|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]. 479 e-135
Alignment gi|XP_002699806.1| PREDICTED: poly(A) binding protein, cytoplas... 479 e-135
Alignment gi|XP_002700052.1| PREDICTED: PABPC1L2B protein-like [Bos tauru... 327 1e-89
Alignment gi|XP_002700050.1| PREDICTED: PABPC1L2B protein-like [Bos tauru... 326 2e-89
Alignment gi|XP_599343.3| PREDICTED: PABPC1L2B protein-like [Bos taurus]. 326 2e-89
Alignment gi|XP_001252746.2| PREDICTED: PABPC1L2B protein-like [Bos tauru... 326 2e-89
>ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus].
Length = 636
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_857039.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 14 [Canis
familiaris].
Length = 606
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_856998.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 13 [Canis
familiaris].
Length = 624
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_856957.1| PREDICTED: similar to Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1) isoform 12 [Canis
familiaris].
Length = 615
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,548,174
Number of extensions: 1171401
Number of successful extensions: 8507
Number of sequences better than 1.0e-05: 398
Number of HSP's gapped: 6732
Number of HSP's successfully gapped: 1003
Length of query: 420
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 315
Effective length of database: 15,374,224
Effective search space: 4842880560
Effective search space used: 4842880560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
TRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus].
Length = 645
Score = 716 bits (1848), Expect = 0.0
Identities = 353/421 (83%), Positives = 387/421 (91%), Gaps = 1/421 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTEAMLYEKFSPAGP+LSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKP+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGY FVHFETQEAA++AIEKMNGMLLNDRKVFVGRFKSRKEREAELGA+AKE
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGE++DDE LK+LF +FG LSVKVM D SGKSKGFGFVS+E+HEDA KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKE+ GK I+VGRAQKKVERQ ELKRKFEQ+KQ+RI+RYQGVNLY+KNLDD IDDE+
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG+ITSAKVM+E GRSKGFGFVCF SPEEATKAVTEMNGRIV +KPLYVALAQ
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVP-NPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPI 1258
RKEER+AHLTNQYMQ++A +A+P N ++N QPA + YF+ +PQ RP YY P +
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA-AGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 1259 A 1261
A
Sbjct: 429 A 429
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +2
Query: 845 YQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVM--MEGGRSKGFGFVCFPSPEEATK 1018
Y +LYV +L + + L ++FSP G + S +V M RS G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 1019 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQKMASEKAVPNPVI 1165
A+ MN ++ KP+ + +QR R++ + N +++ + +K++ N +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL--DKSIDNKAL 115
>ref|XP_002692514.1| PREDICTED: polyadenylate-binding protein 1-like [Bos taurus].
Length = 613
Score = 661 bits (1706), Expect = 0.0
Identities = 324/419 (77%), Positives = 370/419 (88%), Gaps = 1/419 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
+ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD+ TRRSLGYAY+NFQQPADAERAL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNF+VIKG+P+RIMWSQRDP LRKSGVGNIFIKNL+ SIDNKALYDTFS FGNILSCK
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDE+GS+G+GFVHFET EAA+ AI MNGMLLNDRKVFVG FKSR+ERE ELGARA E
Sbjct: 130 VVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTN+Y+KN D+D++RL+DLF +FG LSVKVM D+SG S+GFGFV+FE+HE+AQKAV
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
MNG+E++G+ +YVGRAQK+VERQ ELKR+FEQMKQDR+TRYQGVNLYVKNLDD IDDE+
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSP+G ITSAKVM EGG SKGFGFVCF SPEEATKAVTEMNGRIV TKPLYVALAQ
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP-*QPAPSXSYFMAPIPQTPNRPAYYPPKP 1255
RKEER+A LTNQYMQ++++ +A+ P++ QPA SYF+ +PQ P + YY P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGGPILGSFQQPA---SYFLPAVPQPPAQAPYYGSGP 425
>ref|XP_882298.3| PREDICTED: polyadenylate-binding protein 1-like isoform 19 [Bos
taurus].
Length = 613
Score = 661 bits (1706), Expect = 0.0
Identities = 324/419 (77%), Positives = 370/419 (88%), Gaps = 1/419 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
+ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD+ TRRSLGYAY+NFQQPADAERAL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNF+VIKG+P+RIMWSQRDP LRKSGVGNIFIKNL+ SIDNKALYDTFS FGNILSCK
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDE+GS+G+GFVHFET EAA+ AI MNGMLLNDRKVFVG FKSR+ERE ELGARA E
Sbjct: 130 VVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTN+Y+KN D+D++RL+DLF +FG LSVKVM D+SG S+GFGFV+FE+HE+AQKAV
Sbjct: 190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
MNG+E++G+ +YVGRAQK+VERQ ELKR+FEQMKQDR+TRYQGVNLYVKNLDD IDDE+
Sbjct: 250 NMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSP+G ITSAKVM EGG SKGFGFVCF SPEEATKAVTEMNGRIV TKPLYVALAQ
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP-*QPAPSXSYFMAPIPQTPNRPAYYPPKP 1255
RKEER+A LTNQYMQ++++ +A+ P++ QPA SYF+ +PQ P + YY P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGGPILGSFQQPA---SYFLPAVPQPPAQAPYYGSGP 425
>ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus].
Length = 382
Score = 479 bits (1233), Expect = e-135
Identities = 235/362 (64%), Positives = 294/362 (81%), Gaps = 1/362 (0%)
Frame = +2
Query: 5 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 184
A+LYVGDL PDVTE MLY+KF PAGP+ R+CRD +TR LGY YVNF+ PADAE AL+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 185 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 364
TMNFD+I GKP R+MWSQ D LRKSG+GNIFIKNLDKSIDN+AL+ FSAFG+ILSCKV
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 365 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK-E 541
VCD+NGSKGY +VHF++ AA RAI MNG+ LN+R+V+VGRFK +ER AE+ R K
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKAT 197
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNV++KNFG+DMDD++LK+LF ++GP SVKV+ D SGKSKGFGFV +E HE AQKAV
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVL 257
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
+++GK ++GK +YVGRAQKK+ER EL+R+FE+++ +R GV +Y+KNLD+ IDDE+
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEK 317
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L++EFS FG+I+ AKVM+E G+ KGFG +CF S EEATKAV EMNGRIV +KPL V L Q
Sbjct: 318 LKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Query: 1082 RK 1087
+
Sbjct: 378 AR 379
Score = 157 bits (397), Expect = 2e-38
Identities = 103/296 (34%), Positives = 161/296 (54%), Gaps = 3/296 (1%)
Frame = +2
Query: 275 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 448
+++ +LD + LY F G + ++ D GYG+V+F AE A+ M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 449 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 628
N L+N K F + +R + G N++IKN + +D+ L LF FG L
Sbjct: 80 NFDLING-KPFRLMWSQPDDRLRKSG-----IGNIFIKNLDKSIDNRALFYLFSAFGSIL 133
Query: 629 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 808
S KV+ D++G SKG+ +V F+ A +A+ MNG LN +Q+YVGR + ER E++
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 809 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMMEG-GRSKGFGF 985
+ D+ T N++VKN D +DD++L++ FS +G S KV+ + G+SKGFGF
Sbjct: 193 R------DKATF---TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGF 243
Query: 986 VCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQKMASEKAVP 1153
V + + E A KAV +++G+ + K LYV AQ+K ER A L ++ + EK+ P
Sbjct: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRP 299
Score = 79.0 bits (193), Expect = 9e-15
Identities = 52/183 (28%), Positives = 99/183 (54%), Gaps = 17/183 (9%)
Frame = +2
Query: 8 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 187
+++V + D+ + L E FS GP S++V RD + +S G+ +V ++ A++A+
Sbjct: 200 NVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLD 258
Query: 188 MNFDVIKGKPVRIMWSQRD-----------------PSLRKSGVGNIFIKNLDKSIDNKA 316
++ I GK + + +Q+ R GV I+IKNLD++ID++
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETIDDEK 317
Query: 317 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 496
L + FS+FG+I KV+ + KG+G + F + E A +A+++MNG ++ + + V +
Sbjct: 318 LKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Query: 497 SRK 505
+R+
Sbjct: 378 ARR 380
>ref|XP_002699806.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Bos taurus].
Length = 382
Score = 479 bits (1233), Expect = e-135
Identities = 235/362 (64%), Positives = 294/362 (81%), Gaps = 1/362 (0%)
Frame = +2
Query: 5 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 184
A+LYVGDL PDVTE MLY+KF PAGP+ R+CRD +TR LGY YVNF+ PADAE AL+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 185 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 364
TMNFD+I GKP R+MWSQ D LRKSG+GNIFIKNLDKSIDN+AL+ FSAFG+ILSCKV
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKV 137
Query: 365 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK-E 541
VCD+NGSKGY +VHF++ AA RAI MNG+ LN+R+V+VGRFK +ER AE+ R K
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKAT 197
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNV++KNFG+DMDD++LK+LF ++GP SVKV+ D SGKSKGFGFV +E HE AQKAV
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVL 257
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
+++GK ++GK +YVGRAQKK+ER EL+R+FE+++ +R GV +Y+KNLD+ IDDE+
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEK 317
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L++EFS FG+I+ AKVM+E G+ KGFG +CF S EEATKAV EMNGRIV +KPL V L Q
Sbjct: 318 LKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Query: 1082 RK 1087
+
Sbjct: 378 AR 379
Score = 157 bits (397), Expect = 2e-38
Identities = 103/296 (34%), Positives = 161/296 (54%), Gaps = 3/296 (1%)
Frame = +2
Query: 275 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 448
+++ +LD + LY F G + ++ D GYG+V+F AE A+ M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 449 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 628
N L+N K F + +R + G N++IKN + +D+ L LF FG L
Sbjct: 80 NFDLING-KPFRLMWSQPDDRLRKSG-----IGNIFIKNLDKSIDNRALFYLFSAFGSIL 133
Query: 629 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 808
S KV+ D++G SKG+ +V F+ A +A+ MNG LN +Q+YVGR + ER E++
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 809 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMMEG-GRSKGFGF 985
+ D+ T N++VKN D +DD++L++ FS +G S KV+ + G+SKGFGF
Sbjct: 193 R------DKATF---TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGF 243
Query: 986 VCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQKMASEKAVP 1153
V + + E A KAV +++G+ + K LYV AQ+K ER A L ++ + EK+ P
Sbjct: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRP 299
Score = 79.0 bits (193), Expect = 9e-15
Identities = 52/183 (28%), Positives = 99/183 (54%), Gaps = 17/183 (9%)
Frame = +2
Query: 8 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 187
+++V + D+ + L E FS GP S++V RD + +S G+ +V ++ A++A+
Sbjct: 200 NVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLD 258
Query: 188 MNFDVIKGKPVRIMWSQRD-----------------PSLRKSGVGNIFIKNLDKSIDNKA 316
++ I GK + + +Q+ R GV I+IKNLD++ID++
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETIDDEK 317
Query: 317 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 496
L + FS+FG+I KV+ + KG+G + F + E A +A+++MNG ++ + + V +
Sbjct: 318 LKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Query: 497 SRK 505
+R+
Sbjct: 378 ARR 380
>ref|XP_002700052.1| PREDICTED: PABPC1L2B protein-like [Bos taurus].
Length = 489
Score = 327 bits (838), Expect = 1e-89
Identities = 157/196 (80%), Positives = 177/196 (90%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 290 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 349
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
+T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 350 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 409
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V CDE G KGYGFVHF+ QE+AERAI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 410 VACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 469
Query: 542 FTNVYIKNFGEDMDDE 589
T+ +K+F ED D+E
Sbjct: 470 STSADVKDFEEDTDEE 485
Score = 110 bits (276), Expect = 2e-24
Identities = 67/191 (35%), Positives = 111/191 (58%), Gaps = 2/191 (1%)
Frame = +2
Query: 233 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVH 406
S+R+P+ + ++++ +L + LY+ FS G ILS ++ D+ S GY +V+
Sbjct: 282 SERNPNFP---MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVN 338
Query: 407 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDD 586
++ A+RA+E +N ++ R V + +R+ L R NV+IKN G+ +D+
Sbjct: 339 YQQPVDAKRALETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDN 392
Query: 587 ERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 766
+ L ++F FG LS KV DE G KG+GFV F++ E A++A+D MNG LN ++I+VG
Sbjct: 393 KALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVG 451
Query: 767 RAQKKVERQTE 799
R + ER+ E
Sbjct: 452 RFKSHKEREAE 462
Score = 86.3 bits (212), Expect = 5e-17
Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 7/206 (3%)
Frame = +2
Query: 506 EREAELGARAKEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSK 667
+ +AE G ++ N +Y+ + ++ + L + F GP LS+++ D+ + +S
Sbjct: 273 DADAETGRGSERNPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSL 332
Query: 668 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 847
G+ +V++++ DA++A++ +N + G+ + + +Q+ D R
Sbjct: 333 GYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQR-----------------DPSLRK 375
Query: 848 QGV-NLYVKNLDDGIDDERLRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAV 1024
GV N+++KNL ID++ L FS FG I S KV + KG+GFV F E A +A+
Sbjct: 376 SGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAI 435
Query: 1025 TEMNGRIVATKPLYVALAQRKEERQA 1102
MNG + + ++V + +ER+A
Sbjct: 436 DAMNGMFLNYRKIFVGRFKSHKEREA 461
>ref|XP_002700050.1| PREDICTED: PABPC1L2B protein-like [Bos taurus].
Length = 200
Score = 326 bits (836), Expect = 2e-89
Identities = 157/196 (80%), Positives = 177/196 (90%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
+T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V CDE G KGYGFVHF+ QE+AERAI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 121 VACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 542 FTNVYIKNFGEDMDDE 589
T+ +K+F ED D+E
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 108 bits (270), Expect = 1e-23
Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Frame = +2
Query: 266 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 439
+ ++++ +L + LY+ FS G ILS ++ D+ S GY +V+++ A+RA+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 440 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 619
E +N ++ R V + +R+ L R NV+IKN G+ +D++ L ++F FG
Sbjct: 61 ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 620 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 799
LS KV DE G KG+GFV F++ E A++A+D MNG LN ++I+VGR + ER+ E
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 85.1 bits (209), Expect = 1e-16
Identities = 52/187 (27%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Frame = +2
Query: 548 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 724
++Y+ + ++ + L + F GP LS+++ D+ + +S G+ +V++++ DA++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 901
+N + G+ + + +Q+ D R GV N+++KNL ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L FS FG I S KV + KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 1082 RKEERQA 1102
+ER+A
Sbjct: 166 SHKEREA 172
>ref|XP_599343.3| PREDICTED: PABPC1L2B protein-like [Bos taurus].
Length = 200
Score = 326 bits (836), Expect = 2e-89
Identities = 157/196 (80%), Positives = 177/196 (90%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
+T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V CDE G KGYGFVHF+ QE+AERAI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 121 VACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 542 FTNVYIKNFGEDMDDE 589
T+ +K+F ED D+E
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 108 bits (270), Expect = 1e-23
Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Frame = +2
Query: 266 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 439
+ ++++ +L + LY+ FS G ILS ++ D+ S GY +V+++ A+RA+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 440 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 619
E +N ++ R V + +R+ L R NV+IKN G+ +D++ L ++F FG
Sbjct: 61 ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 620 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 799
LS KV DE G KG+GFV F++ E A++A+D MNG LN ++I+VGR + ER+ E
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 85.1 bits (209), Expect = 1e-16
Identities = 52/187 (27%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Frame = +2
Query: 548 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 724
++Y+ + ++ + L + F GP LS+++ D+ + +S G+ +V++++ DA++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 901
+N + G+ + + +Q+ D R GV N+++KNL ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L FS FG I S KV + KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 1082 RKEERQA 1102
+ER+A
Sbjct: 166 SHKEREA 172
>ref|XP_001252746.2| PREDICTED: PABPC1L2B protein-like [Bos taurus].
Length = 570
Score = 326 bits (836), Expect = 2e-89
Identities = 157/196 (80%), Positives = 177/196 (90%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 371 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 430
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
+T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 431 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 490
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V CDE G KGYGFVHF+ QE+AERAI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 491 VACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 550
Query: 542 FTNVYIKNFGEDMDDE 589
T+ +K+F ED D+E
Sbjct: 551 STSADVKDFEEDTDEE 566
Score = 108 bits (270), Expect = 1e-23
Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Frame = +2
Query: 266 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 439
+ ++++ +L + LY+ FS G ILS ++ D+ S GY +V+++ A+RA+
Sbjct: 371 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRAL 430
Query: 440 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 619
E +N ++ R V + +R+ L R NV+IKN G+ +D++ L ++F FG
Sbjct: 431 ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 484
Query: 620 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 799
LS KV DE G KG+GFV F++ E A++A+D MNG LN ++I+VGR + ER+ E
Sbjct: 485 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 543
Score = 85.1 bits (209), Expect = 1e-16
Identities = 52/187 (27%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Frame = +2
Query: 548 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 724
++Y+ + ++ + L + F GP LS+++ D+ + +S G+ +V++++ DA++A++
Sbjct: 373 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 432
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 901
+N + G+ + + +Q+ D R GV N+++KNL ID++
Sbjct: 433 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 475
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L FS FG I S KV + KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 476 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 535
Query: 1082 RKEERQA 1102
+ER+A
Sbjct: 536 SHKEREA 542
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,457,560
Number of extensions: 1129205
Number of successful extensions: 5733
Number of sequences better than 1.0e-05: 140
Number of HSP's gapped: 5259
Number of HSP's successfully gapped: 300
Length of query: 420
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,207,134
Effective search space: 4475247210
Effective search space used: 4475247210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013208
(1261 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [... 811 0.0
Alignment gi|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [... 716 0.0
Alignment gi|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-l... 716 0.0
Alignment gi|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-l... 658 0.0
Alignment gi|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-l... 536 e-152
Alignment gi|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-l... 327 9e-90
Alignment gi|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-l... 327 9e-90
Alignment gi|XP_003356374.1| PREDICTED: polyadenylate-binding protein 4-l... 144 8e-35
Alignment gi|XP_001926524.1| PREDICTED: splicing factor 3B subunit 4 [Sus... 121 9e-28
Alignment gi|NP_001182263.1| ELAV-like protein 1 [Sus scrofa]. 120 2e-27
>ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa].
Length = 636
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 1e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [Sus scrofa].
Length = 644
Score = 716 bits (1849), Expect = 0.0
Identities = 353/421 (83%), Positives = 388/421 (92%), Gaps = 1/421 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTEAMLYEKFSPAGP+LSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKP+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGY FVHFETQEAA++AIEKMNGMLLNDRKVFVGRFKSRKEREAELGA+AKE
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGE++DDE LK+LF +FG LSVKVM D SGKSKGFGFVS+E+HEDA KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ+RI+RYQGVNLY+KNLDD IDDE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG+ITSAKVM+E GRSKGFGFVCF SPEEATKAVTEMNGRIV +KPLYVALAQ
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVP-NPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPI 1258
RKEER+AHLTNQYMQ++A +A+P N ++N QPA + YF+ +PQ RP YY P +
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA-AGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 1259 A 1261
A
Sbjct: 429 A 429
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +2
Query: 845 YQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVM--MEGGRSKGFGFVCFPSPEEATK 1018
Y +LYV +L + + L ++FSP G + S +V M RS G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 1019 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQKMASEKAVPNPVI 1165
A+ MN ++ KP+ + +QR R++ + N +++ + +K++ N +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL--DKSIDNKAL 115
>ref|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa].
Length = 656
Score = 716 bits (1849), Expect = 0.0
Identities = 353/421 (83%), Positives = 388/421 (92%), Gaps = 1/421 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTEAMLYEKFSPAGP+LSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKP+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGY FVHFETQEAA++AIEKMNGMLLNDRKVFVGRFKSRKEREAELGA+AKE
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGE++DDE LK+LF +FG LSVKVM D SGKSKGFGFVS+E+HEDA KAV+
Sbjct: 190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ+RI+RYQGVNLY+KNLDD IDDE+
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG+ITSAKVM+E GRSKGFGFVCF SPEEATKAVTEMNGRIV +KPLYVALAQ
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVP-NPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPI 1258
RKEER+AHLTNQYMQ++A +A+P N ++N QPA + YF+ +PQ RP YY P +
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA-AGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 1259 A 1261
A
Sbjct: 429 A 429
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +2
Query: 845 YQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVM--MEGGRSKGFGFVCFPSPEEATK 1018
Y +LYV +L + + L ++FSP G + S +V M RS G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 1019 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQKMASEKAVPNPVI 1165
A+ MN ++ KP+ + +QR R++ + N +++ + +K++ N +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL--DKSIDNKAL 115
>ref|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-like [Sus scrofa].
Length = 610
Score = 658 bits (1697), Expect = 0.0
Identities = 320/418 (76%), Positives = 369/418 (88%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
+ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD+ TRRSLGYAY+NFQQPADAERAL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNF+VIKG+P+RIMWSQRDP LRKSGVGN+FIKNL+ SIDNKALYDTFS FGNILSCK
Sbjct: 70 DTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCD++GS+G+GFVHFET EAA+ AI MNGMLLNDRKVFVG FKSR+EREAELGARA E
Sbjct: 130 VVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTN+Y+KN D+D+ L+DLF +FG LSVKVM D+SG S+GFGFV+FE+HEDAQKAV
Sbjct: 190 FTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVT 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
+MNGKE++G+ +YVGRAQK+VERQ ELKR+FEQMKQDR+TRYQGVNLYVKNLDD IDDE+
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEF+P+G ITSAKVM EGG SKGFGFVCF SPEEATKAVTEMNGRIV TKPLYVALAQ
Sbjct: 310 LRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKP 1255
RKEER+A LTNQY+Q++++ +A+ +P++ Q SYF+ +PQ P + YY P
Sbjct: 370 RKEERKAILTNQYIQRLSTMRALGSPLLGSLQ--QPTSYFLPAVPQPPAQSPYYASGP 425
>ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa].
Length = 370
Score = 536 bits (1380), Expect = e-152
Identities = 257/360 (71%), Positives = 311/360 (86%)
Frame = +2
Query: 5 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 184
ASLYVGDLH DVTE +L++KFS GP+LSIR+CRD++TRRSLGYAYVNF Q ADA++ALD
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 185 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 364
TMNFD+IKGK +R+MWSQRD LRKSG+GN+FIKNLDKSIDNK LY+ FSAFG ILS KV
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129
Query: 365 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 544
+ D+ GS+GY FVHF+ Q AA+RAIE+MNG LL D ++FVGRFK+RK+REAEL +A EF
Sbjct: 130 MSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKANEF 189
Query: 545 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 724
TNVYIKNFG+DMDDERLK++F K+G LSVKVM D SGKSKGFGFVSF+ HE A+KAV+E
Sbjct: 190 TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 904
MNGK++NG+ ++VGRAQKK ERQ ELK+ FEQ+K++R R QGV LY+KNLD+ IDDE+L
Sbjct: 250 MNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKL 309
Query: 905 RKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQR 1084
R+EFS FG+I+ KVM E GRSKGFG +CF SPEEATKA+TEMNGRI+ +KPL +ALAQ+
Sbjct: 310 RREFSSFGSISRVKVMQEEGRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQK 369
Score = 174 bits (440), Expect = 1e-43
Identities = 105/288 (36%), Positives = 164/288 (56%), Gaps = 3/288 (1%)
Frame = +2
Query: 272 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEK 445
++++ +L + L+ FS G +LS ++ D S GY +V+F A++A++
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 446 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 625
MN L+ + + + +R+A L R NV+IKN + +D++ L + F FG
Sbjct: 71 MNFDLIKGKSIRL----MWSQRDAYL--RKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKI 124
Query: 626 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 805
LS KVM+D+ G S+G+ FV F+ A +A++EMNG L +++VGR + + +R+ EL+
Sbjct: 125 LSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQ 183
Query: 806 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMMEG-GRSKGFG 982
K + N+Y+KN D +DDERL++ FS +G S KVM + G+SKGFG
Sbjct: 184 NKANEF----------TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFG 233
Query: 983 FVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
FV F S E A KAV EMNG+ + + L+V AQ+K ERQA L + Q
Sbjct: 234 FVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQ 281
Score = 171 bits (434), Expect = 6e-43
Identities = 104/276 (37%), Positives = 160/276 (57%), Gaps = 17/276 (6%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
+ ++++ +L + LYE FS G ILS +V D + S GYA+V+FQ A+RA+
Sbjct: 97 IGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSRGYAFVHFQNQIAADRAI 154
Query: 182 DTMNFDVIK------GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 343
+ MN ++K G+ + + + + N++IKN +D++ L + FS +G
Sbjct: 155 EEMNGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYG 214
Query: 344 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 520
LS KV+ D +G SKG+GFV F++ EAA++A+E+MNG +N + +FVGR + + ER+AE
Sbjct: 215 KTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Query: 521 LGA----------RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 670
L R + +YIKN E +DDE+L+ F FG VKVM +E G+SKG
Sbjct: 275 LKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEE-GRSKG 333
Query: 671 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 778
FG + F E+A KA+ EMNG+ L K + + AQK
Sbjct: 334 FGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQK 369
>ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus
scrofa].
Length = 200
Score = 327 bits (838), Expect = 9e-90
Identities = 157/196 (80%), Positives = 177/196 (90%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
+T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V CDE G KGYGFVHF+ QE+AERAI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 121 VACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 542 FTNVYIKNFGEDMDDE 589
T+ +K+F ED D+E
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 109 bits (272), Expect = 4e-24
Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Frame = +2
Query: 266 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 439
+ ++++ +L + LY+ FS G ILS ++ D+ S GY +V+++ A+RA+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 440 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 619
E +N ++ R V + +R+ L R NV+IKN G+ +D++ L ++F FG
Sbjct: 61 ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 620 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 799
LS KV DE G KG+GFV F++ E A++A+D MNG LN ++I+VGR + ER+ E
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 85.9 bits (211), Expect = 4e-17
Identities = 52/187 (27%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Frame = +2
Query: 548 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 724
++Y+ + ++ + L + F GP LS+++ D+ + +S G+ +V++++ DA++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 901
+N + G+ + + +Q+ D R GV N+++KNL ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L FS FG I S KV + KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 1082 RKEERQA 1102
+ER+A
Sbjct: 166 SHKEREA 172
>ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus
scrofa].
Length = 200
Score = 327 bits (838), Expect = 9e-90
Identities = 157/196 (80%), Positives = 177/196 (90%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
+T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V CDE G KGYGFVHF+ QE+AERAI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 121 VACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 542 FTNVYIKNFGEDMDDE 589
T+ +K+F ED D+E
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 109 bits (272), Expect = 4e-24
Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Frame = +2
Query: 266 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 439
+ ++++ +L + LY+ FS G ILS ++ D+ S GY +V+++ A+RA+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 440 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 619
E +N ++ R V + +R+ L R NV+IKN G+ +D++ L ++F FG
Sbjct: 61 ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 620 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 799
LS KV DE G KG+GFV F++ E A++A+D MNG LN ++I+VGR + ER+ E
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 85.9 bits (211), Expect = 4e-17
Identities = 52/187 (27%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Frame = +2
Query: 548 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 724
++Y+ + ++ + L + F GP LS+++ D+ + +S G+ +V++++ DA++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 901
+N + G+ + + +Q+ D R GV N+++KNL ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L FS FG I S KV + KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 1082 RKEERQA 1102
+ER+A
Sbjct: 166 SHKEREA 172
>ref|XP_003356374.1| PREDICTED: polyadenylate-binding protein 4-like, partial [Sus
scrofa].
Length = 416
Score = 144 bits (364), Expect = 8e-35
Identities = 72/106 (67%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Frame = +2
Query: 947 VMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
VM+E GRSKGFGFVCF SPEEATKAVTEMNGRIV +KPLYVALAQRKEER+AHLTNQYMQ
Sbjct: 1 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 60
Query: 1127 KMASEKAVP-NPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
++A +A+P N ++N QPA + YF+ +PQ RP YY P +A
Sbjct: 61 RVAGMRALPANAILNQFQPA-AGGYFVPAVPQAQGRPPYYTPNQLA 105
Score = 60.8 bits (146), Expect = 1e-09
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +2
Query: 650 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 820
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ER+ L ++ Q
Sbjct: 4 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 60
>ref|XP_001926524.1| PREDICTED: splicing factor 3B subunit 4 [Sus scrofa].
Length = 424
Score = 121 bits (303), Expect = 9e-28
Identities = 72/183 (39%), Positives = 106/183 (57%), Gaps = 4/183 (2%)
Frame = +2
Query: 5 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 184
A++YVG L V+E +L+E F AGP+++ + +D +T + GY +V F DA+ A+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 185 TMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
MN + GKP+R+ ++ + VG NIFI NLD ID K LYDTFSAFG IL
Sbjct: 73 IMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 130
Query: 362 VVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 532
+ D SKGY F++F + +A++ AIE MNG L +R + V + +K+ + E
Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGERHGS 189
Query: 533 AKE 541
A E
Sbjct: 190 AAE 192
Score = 92.8 bits (229), Expect = 4e-19
Identities = 73/269 (27%), Positives = 115/269 (42%), Gaps = 33/269 (12%)
Frame = +2
Query: 551 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 727
VY+ E + + L +LF + GP ++ + D +G+ +G+GFV F EDA A+ M
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 728 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 907
N +L GK I V +A + G N+++ NLD ID++ L
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDV-----------------GANIFIGNLDPEIDEKLLY 117
Query: 908 KEFSPFGAITSAKVMM---EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALA 1078
FS FG I +M + G SKG+ F+ F S + + A+ MNG+ + +P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 1079 QRKEER-------------------QAHLTNQYMQKMASEKAVPNPVIN------P*QPA 1183
+K+ + QA +Q + PNPV++ P
Sbjct: 178 FKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGM 237
Query: 1184 PSXSYFMAPIPQ----TPNRPAYYPPKPI 1258
P F P+P P P PP P+
Sbjct: 238 PPPGSFPPPVPPPGALPPGIPPAMPPPPM 266
>ref|NP_001182263.1| ELAV-like protein 1 [Sus scrofa].
Length = 326
Score = 120 bits (301), Expect = 2e-27
Identities = 87/318 (27%), Positives = 151/318 (47%), Gaps = 40/318 (12%)
Frame = +2
Query: 263 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERA 436
G N+ + L +++ + L FS+ G I S K++ D+ S GYGFV++ T + AERA
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 437 IEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKF 616
I +NG+ L + + K A + + N+YI M + ++D+F F
Sbjct: 78 INTLNGLRLQSKTI--------KVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPF 129
Query: 617 GPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNG--------------- 748
G ++ +V+ D+ +G S+G F+ F++ +A++A+ NG + G
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQ 189
Query: 749 -------KQIYVGRAQK---KVERQTELKRKFEQMKQDRITRYQGVN----------LYV 868
Q+Y A++ V Q + + +F M D ++ GVN +++
Sbjct: 190 NKNVALLSQLYHSPARRFGGPVHHQAQ-RFRFSPMGVDHMSGLSGVNVPGNASSGWCIFI 248
Query: 869 KNLDDGIDDERLRKEFSPFGAITSAKVMME--GGRSKGFGFVCFPSPEEATKAVTEMNGR 1042
NL D+ L + F PFGA+T+ KV+ + + KGFGFV + EEA+ A+ +NG
Sbjct: 249 YNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGY 308
Query: 1043 IVATKPLYVALAQRKEER 1096
+ K L V+ K +
Sbjct: 309 RLGDKILQVSFKTNKSHK 326
Score = 88.6 bits (218), Expect = 7e-18
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
Frame = +2
Query: 8 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 187
+L V L ++T+ L FS G I S ++ RD + SLGY +VN+ DAERA++T
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 188 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 367
+N ++ K +++ +++ PS N++I L +++ K + D FS FG I++ +V+
Sbjct: 81 LNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVL 138
Query: 368 CDENG--SKGYGFVHFETQEAAERAIEKMNG 454
D+ S+G F+ F+ + AE AI NG
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,574,343
Number of extensions: 721439
Number of successful extensions: 3922
Number of sequences better than 1.0e-05: 97
Number of HSP's gapped: 3581
Number of HSP's successfully gapped: 221
Length of query: 420
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 318
Effective length of database: 8,804,438
Effective search space: 2799811284
Effective search space used: 2799811284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013208
(1261 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]. 810 0.0
Alignment gi|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus ... 710 0.0
Alignment gi|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus ... 710 0.0
Alignment gi|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus ... 709 0.0
Alignment gi|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musc... 696 0.0
Alignment gi|NP_001107551.1| polyadenylate-binding protein 1-like [Mus mu... 595 e-170
Alignment gi|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like ... 501 e-142
Alignment gi|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]. 469 e-132
Alignment gi|XP_003086944.1| PREDICTED: polyadenylate-binding protein 4-l... 420 e-117
Alignment gi|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-l... 321 7e-88
>ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus].
Length = 636
Score = 810 bits (2091), Expect = 0.0
Identities = 405/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLK+LFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (486), Expect = 8e-49
Identities = 114/298 (38%), Positives = 173/298 (58%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL++ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus].
Length = 660
Score = 710 bits (1833), Expect = 0.0
Identities = 349/421 (82%), Positives = 387/421 (91%), Gaps = 1/421 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTEAMLYEKFSPAGP+LSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDV+KGKP+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGY FVHFETQEAA++AIEKMNGMLLNDRKVFVGRFKSRKEREAELGA+AKE
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGE++DD LK+LF +FG LSVKVM D SGKSKGFGFVS+E+HEDA KAV+
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ+RI+RYQGVNLY+KNLDD IDDE+
Sbjct: 250 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LR+EFSPFG+ITSAKVM+E GRSKGFGFVCF SPEEATKAVTEMNGRIV +KPLYVALAQ
Sbjct: 310 LRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVP-NPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPI 1258
RKEER+AHLTNQYMQ++A +A+P + ++N QPA + YF+ +PQ RP YY P +
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRALPASAILNQFQPA-AGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 1259 A 1261
A
Sbjct: 429 A 429
Score = 49.7 bits (117), Expect = 5e-06
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +2
Query: 845 YQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVM--MEGGRSKGFGFVCFPSPEEATK 1018
Y +LYV +L + + L ++FSP G + S +V M RS G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 1019 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQKMASEKAVPNPVI 1165
A+ MN ++ KP+ + +QR R++ + N +++ + +K++ N +
Sbjct: 68 ALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNL--DKSIDNKAL 115
>ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus].
Length = 615
Score = 710 bits (1833), Expect = 0.0
Identities = 349/421 (82%), Positives = 387/421 (91%), Gaps = 1/421 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTEAMLYEKFSPAGP+LSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDV+KGKP+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGY FVHFETQEAA++AIEKMNGMLLNDRKVFVGRFKSRKEREAELGA+AKE
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGE++DD LK+LF +FG LSVKVM D SGKSKGFGFVS+E+HEDA KAV+
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVE 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ+RI+RYQGVNLY+KNLDD IDDE+
Sbjct: 250 EMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LR+EFSPFG+ITSAKVM+E GRSKGFGFVCF SPEEATKAVTEMNGRIV +KPLYVALAQ
Sbjct: 310 LRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVP-NPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPI 1258
RKEER+AHLTNQYMQ++A +A+P + ++N QPA + YF+ +PQ RP YY P +
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRALPASAILNQFQPA-AGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 1259 A 1261
A
Sbjct: 429 A 429
Score = 49.7 bits (117), Expect = 5e-06
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +2
Query: 845 YQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVM--MEGGRSKGFGFVCFPSPEEATK 1018
Y +LYV +L + + L ++FSP G + S +V M RS G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 1019 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQKMASEKAVPNPVI 1165
A+ MN ++ KP+ + +QR R++ + N +++ + +K++ N +
Sbjct: 68 ALDTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNL--DKSIDNKAL 115
>ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus].
Length = 643
Score = 709 bits (1831), Expect = 0.0
Identities = 360/426 (84%), Positives = 380/426 (89%), Gaps = 10/426 (2%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
+ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV RD ITRRSLGYA VNFQQ DAERAL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIF+KNLD+SID+K LYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQE AERAIEKMNGM LND KVFVGRFKSR++R+AELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKN GEDMDDERL+DLFG+FGPALSVKVMTDESGKSKGFGFVSFERHEDA+KAV+
Sbjct: 190 FTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVE 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK----------QDRITRYQGVNLYVK 871
EMNGK+LNGKQIYVGRAQKKVERQTELK KF QMK QDR R +GVNLYVK
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVK 309
Query: 872 NLDDGIDDERLRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVA 1051
NLDDGIDDERLRKEFSPFG ITSAKV MEGGRSKGFGFVCF SPEEATKAVTEMNG+IVA
Sbjct: 310 NLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVA 369
Query: 1052 TKPLYVALAQRKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNR 1231
TKPLYVALAQRKEERQAHL+NQYMQ+MAS A PNPV++P QPA S + T +R
Sbjct: 370 TKPLYVALAQRKEERQAHLSNQYMQRMASTSAGPNPVVSPFQPAQGPSGYCMTATPTQSR 429
Query: 1232 PAYYPP 1249
AY P
Sbjct: 430 RAYCAP 435
Score = 190 bits (483), Expect = 2e-48
Identities = 115/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY V+F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
E AERA++ MN ++ + V + +R+ L R N+++KN +D + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFVKNLDRSIDSKTL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E+A++A+++MNG LN +++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ +RQ EL + ++ N+Y+KNL + +DDERL+ F FG S KVM
Sbjct: 175 SRRDRQAELGARAKEF----------TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L +++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ 282
>ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus].
Length = 628
Score = 696 bits (1797), Expect = 0.0
Identities = 352/409 (86%), Positives = 375/409 (91%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFS AGPILSIRV RD+ITRRSLGYA VNF+QPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLR+SGVGN+FIKNL+K+IDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VV DENGSKG+GFVHFET+EAAERAIEKMNGMLLNDRKVFVGRFKS+KEREAELG KE
Sbjct: 130 VVSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFG+ MDDE L LFG+FG LSVKVMTDE GKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGK IYVGRAQKK +R TELK KFEQ+ QD+ RYQG+NLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L+KEFSPFG ITS KVM EGGRSKGFGFVCF SPEEATKAV+EMNGRIVATKPLYVALAQ
Sbjct: 310 LQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPN 1228
RKEERQAHLTNQY+Q+MAS ++ PNPV NP QPA S SY +A +PQT N
Sbjct: 370 RKEERQAHLTNQYIQRMASVRSGPNPV-NPYQPA-SSSYSVAAVPQTQN 416
>ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus].
Length = 607
Score = 595 bits (1533), Expect = e-170
Identities = 295/414 (71%), Positives = 351/414 (84%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
++SLYVGDLHPDVTE+MLYE FSP G ILSIRVCRD+ TRRSLGYAY+NFQQPADAERAL
Sbjct: 10 LSSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNF+VIKG+P+RIMWS RDP LRKSG+GNIFIKNL+ SIDNKALYDTFS FG+ILS K
Sbjct: 70 DTMNFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VV +E+GS+G+GFVHFET EAA++AI MNGMLLNDRKVFVG FKSR++REAELGARA
Sbjct: 130 VVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTN+Y+KN ++D++RL+DLF +FG SVKVM D +G+S+GFGFV+FE+HE+AQKAVD
Sbjct: 190 FTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
MNGKE++G+ +YVGRAQK+ ERQ+ELKR+FEQMKQ+R RYQGVNLYVKNLDD I+DER
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L++ FS +G ITSAKVM E SKGFGFVCF SPEEATKAVTEMNGRIV TKPLYVALAQ
Sbjct: 310 LKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYY 1243
RKEER+A LTNQY ++ + +PV++ Q SY + +PQ+ + YY
Sbjct: 370 RKEERKAILTNQYRRRPS------HPVLSSFQ--QPTSYLLPAVPQSTAQAVYY 415
>ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus].
Length = 370
Score = 501 bits (1289), Expect = e-142
Identities = 243/360 (67%), Positives = 295/360 (81%)
Frame = +2
Query: 5 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 184
ASLYVGDLH DVTE ML+ KFS GP+LSIR+CRD+I++RSLGYAYVNF Q DA++AL
Sbjct: 10 ASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKALV 69
Query: 185 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 364
TMNFDVIKGK +R+MWSQRD LR+SGVGN+FIKNLDKSIDNK LY+ FS FG I+S KV
Sbjct: 70 TMNFDVIKGKSIRLMWSQRDACLRRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSKV 129
Query: 365 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 544
+ D GSKGYGFVH++ + AA+RAIE+MNG LL + +FV RFKSRK+REAEL + EF
Sbjct: 130 MTDGEGSKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRDKPTEF 189
Query: 545 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 724
TNVYIKNFG+D+DDE+L+++F K+G LSVKVM D +GKSKGFGFVSF+ HE A+ AV++
Sbjct: 190 TNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVED 249
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 904
MNG+++NG+ I+VGRAQKKVERQ ELK FEQMK++RI Q LY+KNLDD IDDE L
Sbjct: 250 MNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETL 309
Query: 905 RKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQR 1084
RKEFS FG+I KVM E G+SKGFG +CF SPE A KA+ EMNGRI+ +KPL +AL Q+
Sbjct: 310 RKEFSVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQK 369
Score = 169 bits (429), Expect = 3e-42
Identities = 104/293 (35%), Positives = 165/293 (56%), Gaps = 3/293 (1%)
Frame = +2
Query: 257 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAE 430
K ++++ +L + + L+ FS G +LS ++ D S GY +V+F A+
Sbjct: 6 KYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQ 65
Query: 431 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG 610
+A+ MN ++ + + + +R+A L R NV+IKN + +D++ L + F
Sbjct: 66 KALVTMNFDVIKGKSIRL----MWSQRDACL--RRSGVGNVFIKNLDKSIDNKTLYEHFS 119
Query: 611 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 790
FG +S KVMTD G SKG+GFV ++ A +A++EMNGK L ++V R + + +R
Sbjct: 120 PFGTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDR 178
Query: 791 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMMEG-GR 967
+ EL+ D+ T + N+Y+KN D +DDE+LR+ FS +G S KVM + G+
Sbjct: 179 EAELR--------DKPTEF--TNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGK 228
Query: 968 SKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
SKGFGFV F S E A AV +MNG+ + + ++V AQ+K ERQA L + Q
Sbjct: 229 SKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQ 281
Score = 168 bits (425), Expect = 9e-42
Identities = 102/276 (36%), Positives = 156/276 (56%), Gaps = 17/276 (6%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
+ ++++ +L + LYE FSP G I+S +V D S GY +V++Q A+RA+
Sbjct: 97 VGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTD--GEGSKGYGFVHYQDRRAADRAI 154
Query: 182 DTMNFDVIKGKPVRI----MWSQRDPSLR--KSGVGNIFIKNLDKSIDNKALYDTFSAFG 343
+ MN +++ + + R+ LR + N++IKN +D++ L + FS +G
Sbjct: 155 EEMNGKLLRESTLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYG 214
Query: 344 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 520
LS KV+ D G SKG+GFV F++ EAA+ A+E MNG +N + +FVGR + + ER+AE
Sbjct: 215 QTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAE 274
Query: 521 L----------GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 670
L RA++ +YIKN + +DDE L+ F FG VKVM E+G+SKG
Sbjct: 275 LKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVM-QEAGQSKG 333
Query: 671 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 778
FG + F E A KA+ EMNG+ L K + + QK
Sbjct: 334 FGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQK 369
Score = 114 bits (285), Expect = 2e-25
Identities = 70/207 (33%), Positives = 114/207 (55%), Gaps = 9/207 (4%)
Frame = +2
Query: 548 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 724
++Y+ + ED+ ++ L F GP LS+++ D S +S G+ +V+F + DAQKA+
Sbjct: 11 SLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKALVT 70
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 901
MN + GK I + +Q+ D R GV N+++KNLD ID++
Sbjct: 71 MNFDVIKGKSIRLMWSQR-----------------DACLRRSGVGNVFIKNLDKSIDNKT 113
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L + FSPFG I S+KVM +G SKG+GFV + A +A+ EMNG+++ L+VA +
Sbjct: 114 LYEHFSPFGTIMSSKVMTDGEGSKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFK 173
Query: 1082 RKEERQAHL-------TNQYMQKMASE 1141
+++R+A L TN Y++ +
Sbjct: 174 SRKDREAELRDKPTEFTNVYIKNFGDD 200
>ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus].
Length = 381
Score = 469 bits (1206), Expect = e-132
Identities = 232/362 (64%), Positives = 289/362 (79%), Gaps = 1/362 (0%)
Frame = +2
Query: 5 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 184
A+LYVGDL PDVTE MLY+KF PAGP+ R+CRD +TR LGY YVNF+ PADAE AL+
Sbjct: 17 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 76
Query: 185 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 364
TMNFD+I GKP R+MWSQ D LRKSGVGNIFIKNLDK+IDN+AL+ FSAFGNILSCKV
Sbjct: 77 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKV 136
Query: 365 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK-E 541
VCD+NGSKGY +VHF++ AA RAI MNG+ LN+R+V+VGRFK +ER AE+ R +
Sbjct: 137 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERAT 196
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNV++KNFG+D+DDE+L LF ++GP SVKV+ D +GKSKGFGFV +E HE AQKAV
Sbjct: 197 FTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVL 256
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
E++GK ++GK + VGRAQKK+ER EL+R+FE++K R GV +Y+KNLD+ I+DE+
Sbjct: 257 ELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEK 316
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L++EFS FG+I+ AKVMME G+ KGFG VCF S EEA KAV EMNGRI+ +K L+V L Q
Sbjct: 317 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQ 376
Query: 1082 RK 1087
+
Sbjct: 377 AR 378
Score = 157 bits (397), Expect = 2e-38
Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 3/299 (1%)
Frame = +2
Query: 275 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 448
+++ +LD + LY F G + ++ D GYG+V+F AE A+ M
Sbjct: 19 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 78
Query: 449 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 628
N L+N K F + +R + G N++IKN + +D+ L LF FG L
Sbjct: 79 NFDLING-KPFRLMWSQPDDRLRKSGVG-----NIFIKNLDKTIDNRALFYLFSAFGNIL 132
Query: 629 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 808
S KV+ D++G SKG+ +V F+ A +A+ MNG LN +Q+YVGR + ER E++
Sbjct: 133 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 191
Query: 809 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMMEG-GRSKGFGF 985
+ R N++VKN D IDDE+L K FS +G S KV+ + G+SKGFGF
Sbjct: 192 R---------ERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGF 242
Query: 986 VCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQKMASEKAVPNPV 1162
V + + E A KAV E++G+ + K L V AQ+K ER A L ++ + EK P+ V
Sbjct: 243 VRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSGV 301
>ref|XP_003086944.1| PREDICTED: polyadenylate-binding protein 4-like, partial [Mus
musculus].
Length = 234
Score = 420 bits (1080), Expect = e-117
Identities = 205/225 (91%), Positives = 216/225 (96%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTEAMLYEKFSPAGP+LSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDV+KGKP+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGY FVHFETQEAA++AIEKMNGMLLNDRKVFVGRFKSRKEREAELGA+AKE
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFG 676
FTNVYIKNFGE++DD LK+LF +FG LSVKVM D SGKSKGFG
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFG 234
Score = 144 bits (364), Expect = 1e-34
Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 3/242 (1%)
Frame = +2
Query: 266 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAI 439
+ ++++ +L + LY+ FS G +LS +V D S GY +V+F+ AERA+
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 440 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 619
+ MN ++ + + + +R+ L R NV+IKN + +D++ L D F FG
Sbjct: 70 DTMNFDVMKGKPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 620 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 799
LS KV+ DE+G SKG+ FV FE E A KA+++MNG LN ++++VGR + + ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 800 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMME-GGRSKG 976
L K ++ N+Y+KN + +DD L++ FS FG S KVM + G+SKG
Sbjct: 183 LGAKAKEF----------TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKG 232
Query: 977 FG 982
FG
Sbjct: 233 FG 234
Score = 106 bits (264), Expect = 4e-23
Identities = 67/214 (31%), Positives = 113/214 (52%), Gaps = 9/214 (4%)
Frame = +2
Query: 527 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 703
A + ++Y+ + D+ + L + F GP LS++V D + +S G+ +V+F++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 704 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLD 880
A++A+D MN + GK I + +Q+ D R GV N+++KNLD
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 881 DGIDDERLRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKP 1060
ID++ L FS FG I S KV+ + SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 1061 LYVALAQRKEERQAHL-------TNQYMQKMASE 1141
++V + ++ER+A L TN Y++ E
Sbjct: 168 VFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE 201
>ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus].
Length = 229
Score = 321 bits (823), Expect = 7e-88
Identities = 153/195 (78%), Positives = 174/195 (89%)
Frame = +2
Query: 5 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 184
ASLYVGDLHP+VTE+MLYEKFSPAGPILSIR+CRD +TRRSLGYAYVN+QQP DA+RAL+
Sbjct: 31 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALE 90
Query: 185 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 364
TMNFDVI G+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCKV
Sbjct: 91 TMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 150
Query: 365 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 544
CDE G KGYGFVHF+ QE+AERAI+ +NGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 151 ACDEKGPKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 210
Query: 545 TNVYIKNFGEDMDDE 589
T+ K+F +D DDE
Sbjct: 211 TSADFKDFDDDSDDE 225
Score = 112 bits (280), Expect = 6e-25
Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 2/211 (0%)
Frame = +2
Query: 272 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 445
++++ +L + LY+ FS G ILS ++ D+ S GY +V+++ A+RA+E
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 446 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 625
MN ++N R V + +R+ L R NV+IKN G+ +D++ L ++F FG
Sbjct: 92 MNFDVINGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 145
Query: 626 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 805
LS KV DE G KG+GFV F++ E A++A+D +NG LN ++I+VGR + ER+ E
Sbjct: 146 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE-- 202
Query: 806 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 898
Q + K+ DD DDE
Sbjct: 203 --------RGAWARQSTSADFKDFDDDSDDE 225
Score = 88.6 bits (218), Expect = 9e-18
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Frame = +2
Query: 548 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 724
++Y+ + ++ + L + F GP LS+++ D+ + +S G+ +V++++ DA++A++
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 901
MN +NG+ + + +Q+ D R GV N+++KNL ID++
Sbjct: 92 MNFDVINGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 134
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L FS FG I S KV + KG+GFV F E A +A+ +NG + + ++V +
Sbjct: 135 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 194
Query: 1082 RKEERQA 1102
+ER+A
Sbjct: 195 SHKEREA 201
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,992,950
Number of extensions: 985438
Number of successful extensions: 5382
Number of sequences better than 1.0e-05: 184
Number of HSP's gapped: 4707
Number of HSP's successfully gapped: 427
Length of query: 420
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 316
Effective length of database: 12,493,815
Effective search space: 3948045540
Effective search space used: 3948045540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013208
(1261 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]. 811 0.0
Alignment gi|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]. 738 0.0
Alignment gi|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [H... 714 0.0
Alignment gi|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo... 714 0.0
Alignment gi|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [H... 714 0.0
Alignment gi|NP_001118228.1| polyadenylate-binding protein 1-like [Homo s... 651 0.0
Alignment gi|NP_001108206.2| polyadenylate-binding protein 4-like [Homo s... 541 e-154
Alignment gi|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]. 477 e-135
Alignment gi|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo... 327 2e-89
Alignment gi|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo... 327 2e-89
>ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens].
Length = 636
Score = 811 bits (2095), Expect = 0.0
Identities = 406/420 (96%), Positives = 408/420 (97%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE
Sbjct: 130 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQ
Sbjct: 310 LRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
RKEERQAHLTNQYMQ+MAS +AVPNPVINP QPAP YFMA IPQT NR AYYPP IA
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIA 429
Score = 191 bits (484), Expect = 2e-48
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 3/298 (1%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS + ++++ +L + LY+ FS G ILS +V D S GY +V+F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
AERA++ MN ++ + V + +R+ L R N++IKN + +D++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D F FG LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens].
Length = 631
Score = 738 bits (1904), Expect = 0.0
Identities = 372/419 (88%), Positives = 383/419 (91%)
Frame = +2
Query: 5 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 184
ASLYVGDLHPDVTEAMLYEKFSPAGPILSIR+CRD+IT S YAYVNFQ DAE ALD
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 185 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 364
TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIF+KNLDKSI+NKALYDT SAFGNILSC V
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 365 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 544
VCDENGSKGYGFVHFET EAAERAI+KMNGMLLN RKVFVG+FKSRKEREAELGARAKEF
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEF 190
Query: 545 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 724
NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE
Sbjct: 191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 904
MNGKELNGKQIYVGRAQKKVERQTELKR FEQMKQDRITRYQ VNLYVKNLDDGIDDERL
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERL 310
Query: 905 RKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQR 1084
RK FSPFG ITSAKVMMEGGRSKGFGFVCF SPEEATKAVTEMNGRIVATKPLYVALAQR
Sbjct: 311 RKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 1085 KEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPIA 1261
KEERQA+LTN+YMQ+MAS +AVPN Q AP YFM +PQT N AYYPP IA
Sbjct: 371 KEERQAYLTNEYMQRMASVRAVPN------QRAPPSGYFMTAVPQTQNHAAYYPPSQIA 423
Score = 186 bits (473), Expect = 3e-47
Identities = 111/312 (35%), Positives = 177/312 (56%), Gaps = 3/312 (0%)
Frame = +2
Query: 242 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFET 415
+PS ++++ +L + LY+ FS G ILS ++ D +GS Y +V+F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 416 QEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERL 595
+ AE A++ MN ++ + V + +R+ L R N+++KN + ++++ L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFVKNLDKSINNKAL 115
Query: 596 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 775
D FG LS V+ DE+G SKG+GFV FE HE A++A+ +MNG LNG++++VG+ +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 776 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMM 955
+ ER+ EL + ++ N+Y+KN + +DDERL+ F FG S KVM
Sbjct: 175 SRKEREAELGARAKEFP----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 956 -EGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQKM 1132
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L + ++M
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF-EQM 283
Query: 1133 ASEKAVPNPVIN 1168
++ V+N
Sbjct: 284 KQDRITRYQVVN 295
Score = 186 bits (473), Expect = 3e-47
Identities = 113/290 (38%), Positives = 166/290 (57%), Gaps = 17/290 (5%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
+ +++V +L + LY+ S G ILS V D S GY +V+F+ AERA+
Sbjct: 98 VGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAI 155
Query: 182 DTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFG 343
MN ++ G+ V + +R+ L R N++IKN + +D++ L D F FG
Sbjct: 156 KKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFG 215
Query: 344 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 520
LS KV+ DE+G SKG+GFV FE E A++A+++MNG LN ++++VGR + + ER+ E
Sbjct: 216 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 521 LGARAKEF----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 670
L ++ N+Y+KN + +DDERL+ F FG S KVM E G+SKG
Sbjct: 276 LKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKG 334
Query: 671 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 820
FGFV F E+A KAV EMNG+ + K +YV AQ+K ERQ L ++ Q
Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
>ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens].
Length = 631
Score = 714 bits (1844), Expect = 0.0
Identities = 352/421 (83%), Positives = 388/421 (92%), Gaps = 1/421 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTEAMLYEKFSPAGP+LSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKP+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGY FVHFETQEAA++AIEKMNGMLLNDRKVFVGRFKSRKEREAELGA+AKE
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGE++DDE LK+LF +FG LSVKVM D +GKSKGFGFVS+E+HEDA KAV+
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ+RI+RYQGVNLY+KNLDD IDDE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG+ITSAKVM+E GRSKGFGFVCF SPEEATKAVTEMNGRIV +KPLYVALAQ
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVP-NPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPI 1258
RKEER+AHLTNQYMQ++A +A+P N ++N QPA + YF+ +PQ RP YY P +
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA-AGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 1259 A 1261
A
Sbjct: 429 A 429
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +2
Query: 845 YQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVM--MEGGRSKGFGFVCFPSPEEATK 1018
Y +LYV +L + + L ++FSP G + S +V M RS G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 1019 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQKMASEKAVPNPVI 1165
A+ MN ++ KP+ + +QR R++ + N +++ + +K++ N +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL--DKSIDNKAL 115
>ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens].
Length = 644
Score = 714 bits (1844), Expect = 0.0
Identities = 352/421 (83%), Positives = 388/421 (92%), Gaps = 1/421 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTEAMLYEKFSPAGP+LSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKP+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGY FVHFETQEAA++AIEKMNGMLLNDRKVFVGRFKSRKEREAELGA+AKE
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGE++DDE LK+LF +FG LSVKVM D +GKSKGFGFVS+E+HEDA KAV+
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ+RI+RYQGVNLY+KNLDD IDDE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG+ITSAKVM+E GRSKGFGFVCF SPEEATKAVTEMNGRIV +KPLYVALAQ
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVP-NPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPI 1258
RKEER+AHLTNQYMQ++A +A+P N ++N QPA + YF+ +PQ RP YY P +
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA-AGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 1259 A 1261
A
Sbjct: 429 A 429
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +2
Query: 845 YQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVM--MEGGRSKGFGFVCFPSPEEATK 1018
Y +LYV +L + + L ++FSP G + S +V M RS G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 1019 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQKMASEKAVPNPVI 1165
A+ MN ++ KP+ + +QR R++ + N +++ + +K++ N +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL--DKSIDNKAL 115
>ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens].
Length = 660
Score = 714 bits (1844), Expect = 0.0
Identities = 352/421 (83%), Positives = 388/421 (92%), Gaps = 1/421 (0%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTEAMLYEKFSPAGP+LSIRVCRDMITRRSLGYAYVNFQQPADAERAL
Sbjct: 10 MASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFDVIKGKP+RIMWSQRDPSLRKSGVGN+FIKNLDKSIDNKALYDTFSAFGNILSCK
Sbjct: 70 DTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
VVCDENGSKGY FVHFETQEAA++AIEKMNGMLLNDRKVFVGRFKSRKEREAELGA+AKE
Sbjct: 130 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFGE++DDE LK+LF +FG LSVKVM D +GKSKGFGFVS+E+HEDA KAV+
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ+RI+RYQGVNLY+KNLDD IDDE+
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSPFG+ITSAKVM+E GRSKGFGFVCF SPEEATKAVTEMNGRIV +KPLYVALAQ
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVP-NPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPI 1258
RKEER+AHLTNQYMQ++A +A+P N ++N QPA + YF+ +PQ RP YY P +
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA-AGGYFVPAVPQAQGRPPYYTPNQL 428
Query: 1259 A 1261
A
Sbjct: 429 A 429
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/110 (28%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Frame = +2
Query: 845 YQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVM--MEGGRSKGFGFVCFPSPEEATK 1018
Y +LYV +L + + L ++FSP G + S +V M RS G+ +V F P +A +
Sbjct: 8 YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 1019 AVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYMQKMASEKAVPNPVI 1165
A+ MN ++ KP+ + +QR R++ + N +++ + +K++ N +
Sbjct: 68 ALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL--DKSIDNKAL 115
>ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens].
Length = 614
Score = 651 bits (1679), Expect = 0.0
Identities = 319/419 (76%), Positives = 368/419 (87%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
+ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD+ TRRSLGYAY+NFQQPADAERAL
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNF+++KG+P+RIMWSQRDP LRKSGVGNIFIKNL+ SIDNKALYDTFS FGNILSCK
Sbjct: 70 DTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V CDE+GS+G+GFVHFET EAA++AI MNGMLLNDRKVFVG FKSR+EREAELGARA E
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTN+Y+KN D+D++ L+DLF +FG LSVKVM D SG S+ FGFV+FE+HE+AQKAV
Sbjct: 190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
MNGKE++G+ +Y GRAQK+VERQ ELKR+FEQMKQDR+ RYQGVNLYVKNLDD IDD++
Sbjct: 250 HMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LRKEFSP+G ITSAKVM EGG SKGFGFVCF SPEEATKAVTEMNGRIV TKPLYVALAQ
Sbjct: 310 LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 1082 RKEERQAHLTNQYMQKMASEKAVPNPVINP*QPAPSXSYFMAPIPQTPNRPAYYPPKPI 1258
RKEER+A LTNQYMQ++++ + + NP++ Q PS SYF+ +PQ P + AYY P+
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQ-QPS-SYFLPAMPQPPAQAAYYGCGPV 426
>ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens].
Length = 428
Score = 541 bits (1393), Expect = e-154
Identities = 262/361 (72%), Positives = 310/361 (85%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLH DVTE +L+ KFS GP+LSIR+CRD +TRRSLGYAYVNF Q ADA++AL
Sbjct: 67 MASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKAL 126
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
DTMNFD+IKGK +R+MWSQRD LR+SG+GN+FIKNLDKSIDNK LY+ FSAFG ILS K
Sbjct: 127 DTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSK 186
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V+ D+ GSKGY FVHF+ Q AA+RAIE+MNG LL KVFVGRFK+RK+REAEL ++A E
Sbjct: 187 VMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNVYIKNFG DMDDERLKD+F K+G LSVKVMTD SGKSKGFGFVSF+ HE A+KAV+
Sbjct: 247 FTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVE 306
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
EMNG+++NG+ I+VGRAQKKVERQ ELK+ FEQ+K++RI QGV LY+KNLDD IDDE+
Sbjct: 307 EMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEK 366
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
LR EFS FG+I+ KVM E G+SKGFG +CF SPE+ATKA+TEMNGRI+ +KPL +ALAQ
Sbjct: 367 LRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Query: 1082 R 1084
R
Sbjct: 427 R 427
Score = 179 bits (453), Expect = 6e-45
Identities = 107/293 (36%), Positives = 167/293 (56%), Gaps = 3/293 (1%)
Frame = +2
Query: 257 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 430
K + ++++ +L + L+ FS G +LS ++ D+ S GY +V+F A+
Sbjct: 64 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 123
Query: 431 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG 610
+A++ MN ++ + + + +R+A L R NV+IKN + +D++ L + F
Sbjct: 124 KALDTMNFDIIKGKSIRL----MWSQRDAYL--RRSGIGNVFIKNLDKSIDNKTLYEHFS 177
Query: 611 KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 790
FG LS KVM+D+ G SKG+ FV F+ A +A++EMNGK L G +++VGR + + +R
Sbjct: 178 AFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDR 236
Query: 791 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMMEG-GR 967
+ EL+ K + N+Y+KN +DDERL+ FS +G S KVM + G+
Sbjct: 237 EAELRSKASEF----------TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGK 286
Query: 968 SKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 1126
SKGFGFV F S E A KAV EMNGR + + ++V AQ+K ERQA L + Q
Sbjct: 287 SKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 109 bits (273), Expect = 5e-24
Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 9/228 (3%)
Frame = +2
Query: 485 GRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGK 661
G+ S K++E + A+ + ++Y+ + D+ ++ L F GP LS+++ D+ + +
Sbjct: 49 GQTHSGKDKEMNVAAKYR-MASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRR 107
Query: 662 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRIT 841
S G+ +V+F + DAQKA+D MN + GK I + +Q+ D
Sbjct: 108 SLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQR-----------------DAYL 150
Query: 842 RYQGV-NLYVKNLDDGIDDERLRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATK 1018
R G+ N+++KNLD ID++ L + FS FG I S+KVM + SKG+ FV F + A +
Sbjct: 151 RRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADR 210
Query: 1019 AVTEMNGRIVATKPLYVALAQRKEERQAHL-------TNQYMQKMASE 1141
A+ EMNG+++ ++V + +++R+A L TN Y++ +
Sbjct: 211 AIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGD 258
>ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens].
Length = 382
Score = 477 bits (1228), Expect = e-135
Identities = 236/362 (65%), Positives = 294/362 (81%), Gaps = 1/362 (0%)
Frame = +2
Query: 5 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 184
A+LYVGDL PDVTE MLY+KF PAGP+ R+CRD +TR LGY YVNF+ PADAE AL+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 185 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 364
TMNFD+I GKP R+MWSQ D LRKSGVGNIFIKNLDKSIDN+AL+ FSAFGNILSCKV
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 365 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK-E 541
VCD+NGSKGY +VHF++ AA RAI MNG+ LN+R+V+VGRFK +ER AE+ R +
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 542 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 721
FTNV++KN G+D+DDE+LK+LF ++GP SVKV+ D SGKSKGFGFV +E HE AQKAV
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVL 257
Query: 722 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 901
+++GK ++GK +YVGRAQKK+ER EL+R+FE+++ +R GV +Y+KNLD+ I+DE+
Sbjct: 258 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 317
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L++EFS FG+I+ AKVMME G+ KGFG VCF S EEATKAV EMNGRIV +KPL+V L Q
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Query: 1082 RK 1087
+
Sbjct: 378 AR 379
Score = 159 bits (402), Expect = 5e-39
Identities = 105/296 (35%), Positives = 161/296 (54%), Gaps = 3/296 (1%)
Frame = +2
Query: 275 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 448
+++ +LD + LY F G + ++ D GYG+V+F AE A+ M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 449 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 628
N L+N K F + +R + G N++IKN + +D+ L LF FG L
Sbjct: 80 NFDLING-KPFRLMWSQPDDRLRKSGVG-----NIFIKNLDKSIDNRALFYLFSAFGNIL 133
Query: 629 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 808
S KV+ D++G SKG+ +V F+ A +A+ MNG LN +Q+YVGR + ER E++
Sbjct: 134 SCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRT 192
Query: 809 KFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGAITSAKVMMEG-GRSKGFGF 985
+ DR T N++VKN+ D IDDE+L++ F +G S KV+ + G+SKGFGF
Sbjct: 193 R------DRATF---TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243
Query: 986 VCFPSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQKMASEKAVP 1153
V + + E A KAV +++G+ + K LYV AQ+K ER A L ++ + EK+ P
Sbjct: 244 VRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRP 299
Score = 78.2 bits (191), Expect = 2e-14
Identities = 51/183 (27%), Positives = 99/183 (54%), Gaps = 17/183 (9%)
Frame = +2
Query: 8 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 187
+++V ++ D+ + L E F GP S++V RD + +S G+ +V ++ A++A+
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLD 258
Query: 188 MNFDVIKGKPVRIMWSQRD-----------------PSLRKSGVGNIFIKNLDKSIDNKA 316
++ I GK + + +Q+ R GV I+IKNLD++I+++
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP-IYIKNLDETINDEK 317
Query: 317 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 496
L + FS+FG+I KV+ + KG+G V F + E A +A+++MNG ++ + + V +
Sbjct: 318 LKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Query: 497 SRK 505
+R+
Sbjct: 378 ARR 380
>ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens].
Length = 200
Score = 327 bits (837), Expect = 2e-89
Identities = 157/196 (80%), Positives = 177/196 (90%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
+T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V CDE G KGYGFVHF+ QE+AERAI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 542 FTNVYIKNFGEDMDDE 589
T+ +K+F ED D+E
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 108 bits (271), Expect = 8e-24
Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Frame = +2
Query: 266 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 439
+ ++++ +L + LY+ FS G ILS ++ D+ S GY +V+++ A+RA+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 440 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 619
E +N ++ R V + +R+ L R NV+IKN G+ +D++ L ++F FG
Sbjct: 61 ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 620 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 799
LS KV DE G KG+GFV F++ E A++A+D MNG LN ++I+VGR + ER+ E
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 85.5 bits (210), Expect = 9e-17
Identities = 52/187 (27%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Frame = +2
Query: 548 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 724
++Y+ + ++ + L + F GP LS+++ D+ + +S G+ +V++++ DA++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 901
+N + G+ + + +Q+ D R GV N+++KNL ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L FS FG I S KV + KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 1082 RKEERQA 1102
+ER+A
Sbjct: 166 SHKEREA 172
>ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens].
Length = 200
Score = 327 bits (837), Expect = 2e-89
Identities = 157/196 (80%), Positives = 177/196 (90%)
Frame = +2
Query: 2 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 181
MASLYVGDLHP+VTEAMLYEKFSPAGPILSIR+CRD ITRRSLGYAYVN+QQP DA+RAL
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 182 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 361
+T+NFDVIKG+PVRIMWSQRDPSLRKSGVGN+FIKNL K+IDNKALY+ FSAFGNILSCK
Sbjct: 61 ETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 362 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 541
V CDE G KGYGFVHF+ QE+AERAI+ MNGM LN RK+FVGRFKS KEREAE GA A++
Sbjct: 121 VACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQ 180
Query: 542 FTNVYIKNFGEDMDDE 589
T+ +K+F ED D+E
Sbjct: 181 STSADVKDFEEDTDEE 196
Score = 108 bits (271), Expect = 8e-24
Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Frame = +2
Query: 266 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAI 439
+ ++++ +L + LY+ FS G ILS ++ D+ S GY +V+++ A+RA+
Sbjct: 1 MASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRAL 60
Query: 440 EKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 619
E +N ++ R V + +R+ L R NV+IKN G+ +D++ L ++F FG
Sbjct: 61 ETLNFDVIKGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFG 114
Query: 620 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 799
LS KV DE G KG+GFV F++ E A++A+D MNG LN ++I+VGR + ER+ E
Sbjct: 115 NILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 85.5 bits (210), Expect = 9e-17
Identities = 52/187 (27%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Frame = +2
Query: 548 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDE 724
++Y+ + ++ + L + F GP LS+++ D+ + +S G+ +V++++ DA++A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 725 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDER 901
+N + G+ + + +Q+ D R GV N+++KNL ID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 902 LRKEFSPFGAITSAKVMMEGGRSKGFGFVCFPSPEEATKAVTEMNGRIVATKPLYVALAQ 1081
L FS FG I S KV + KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 1082 RKEERQA 1102
+ER+A
Sbjct: 166 SHKEREA 172
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,718,192
Number of extensions: 1158649
Number of successful extensions: 6279
Number of sequences better than 1.0e-05: 205
Number of HSP's gapped: 5580
Number of HSP's successfully gapped: 488
Length of query: 420
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,835,944
Effective search space: 4673322360
Effective search space used: 4673322360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013208
(1261 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1080 0.0
gb|GL892814.2| Sus scrofa unplaced genomic scaffold ChrUScaf699 523 e-146
Sscrofa_Chr11 523 e-146
Sscrofa_Chr04 458 e-126
Sscrofa_Chr06 115 6e-23
Sscrofa_Chr17 109 4e-21
Sscrofa_Chr08 70 3e-09
>Sscrofa_ChrX
|| Length = 144288218
Score = 1080 bits (545), Expect = 0.0
Identities = 895/1002 (89%), Gaps = 16/1002 (1%)
Strand = Plus / Plus
Query: 40 gaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatccgggt 99
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 43589414 gaccgaggcgatgctctaggagaagttcagcccggccgggcccatcctctccatccgggt 43589473
Query: 100 ctgcagggacatgatcacccgccgctccttgggctacgcgtatgtgaacttccagcagcc 159
|||||||||| ||| |||||||| |||||||||| ||| | |||||||||||||||||
Sbjct: 43589474 ctgcagggacgtgaccacccgccactccttgggc---gcggaggtgaacttccagcagcc 43589530
Query: 160 ggcggacgcggagcgtgctttggacaccatgaattttgacgttataaagggcaagccagt 219
| ||||| |||||||||||||| ||||| |||| ||||| |||||||||||||||||||
Sbjct: 43589531 gacggacacggagcgtgctttgaacaccctgaactttgatgttataaagggcaagccagc 43589590
Query: 220 acgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaacatatt 279
||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||| |
Sbjct: 43589591 acgcatcctgtggtctctgcgtgatccatcactttgccaaagtggagtgggcaacat--t 43589648
Query: 280 cattaaaaat--ttggacaaatccattgataataa---agcactgtatgatacattttca 334
|||| |||| ||||||| ||||||||||||||| |||||||||||| | |||||
Sbjct: 43589649 catttaaaacacttggacagatccattgataataataaagcactgtatgagatgttttct 43589708
Query: 335 gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggttat 394
||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 43589709 gctcttggtaacatcctttcatgtaaggtggtttgtgatgaaaacggtcccaagggttat 43589768
Query: 395 ggatttgtgcattttgagacacaagaagcagctgaaagagctattgaaaaaa-tgaatgg 453
|||||||||| || |||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct: 43589769 ggatttgtgcgcttggagacacacgaagcaactgaaagagctattgaaaaaaatgaatgg 43589828
Query: 454 gatgcttctaaatgatcga-aaagtattcgttggacgatttaagtctcgtaaagaacgag 512
||||||||||||||| ||| |||| ||| ||||||||| ||||||||| ||| ||| |||
Sbjct: 43589829 gatgcttctaaatga-cgacaaagcatttgttggacgagttaagtctcttaaggaatgag 43589887
Query: 513 aagccgaacttggagctagggcaaaagagttcaccaatgtttacatcaagaattttggag 572
|||| || ||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 43589888 aagcagaccttggagttagggcaaaggagttcatcaaagtttacatcaagaattttggag 43589947
Query: 573 aagacatggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtg 632
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||
Sbjct: 43589948 aagacatggatgatgagctctttaaggatctctttggcaagtttggacctcccttgcctg 43590007
Query: 633 tgaaagtaatgactgacgagagtggaaaatccaaaggttttggatttgtaagctttgaaa 692
||| || ||||||||| ||| ||||| ||||| ||||||||||||||| |||||||||||
Sbjct: 43590008 tgacagcaatgactgatgagcgtggacaatccgaaggttttggatttgcaagctttgaaa 43590067
Query: 693 ggcatgaagatgcacagaaagccgtagatgaaatgaatggaaaggagctcaatggaaaac 752
||||||| ||||| |||||||| || ||||| ||||||||||||||||||| ||||||||
Sbjct: 43590068 ggcatgacgatgcgcagaaagctgtggatgagatgaatggaaaggagctcagtggaaaac 43590127
Query: 753 aaatttacgtcggtcgagcccagaaaaaagtggaacggcagacggaacttaagcgcaaat 812
| || || || ||| ||||||||||||||| |||| |||||| ||||||| ||| |||||
Sbjct: 43590128 acatgtatgttggttgagcccagaaaaaag-ggaagggcagagggaacttcagcacaaat 43590186
Query: 813 ttgaacagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaa 872
|||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct: 43590187 ttgaacagatgaagcaagatgggatcaccagagaccagggcgttaacctttatgtgaaaa 43590246
Query: 873 atcttgatgatggtattgatgatgaacgtctccggaaagagttttctccatttggtgcaa 932
|||||||||||||| |||||||| | |||||||||| ||| |||||||||||||| |||
Sbjct: 43590247 atcttgatgatggttttgatgatatatgtctccggaaggagctttctccatttggtacaa 43590306
Query: 933 tcactagtgcaaaggttatgatggagggtggtcgcagcaaaggtttcggttttgtttgtt 992
|||||||||||||||||||||||||||||||| ||||||| ||| | ||||| || |||
Sbjct: 43590307 tcactagtgcaaaggttatgatggagggtggttgcagcaacggtcttggtttggtatgtg 43590366
Query: 993 tcccctccccagaagaagccactaaagcagttacagaaatga 1034
|| ||||||||||||||| ||| ||||||||||||||||||
Sbjct: 43590367 tctcctccccagaagaag--actgaagcagttacagaaatga 43590406
Score = 216 bits (109), Expect = 2e-53
Identities = 232/273 (84%)
Strand = Plus / Plus
Query: 2 atggcctcgctctacgtgggggacctacaccccgacgtgaccgaggcgatgctctacgag 61
|||||||||||||| ||||| ||||| ||||| || ||||| ||||| ||||| || |||
Sbjct: 66807335 atggcctcgctctatgtgggcgacctgcaccctgaggtgacggaggcaatgctgtatgag 66807394
Query: 62 aagttcagcccggccgggcccatcctctccatccgggtctgcagggacatgatcacccgc 121
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 66807395 aagttcagcccggccgggcccatcctctccatccgcatctgcagggacaagatcacccgc 66807454
Query: 122 cgctccttgggctacgcgtatgtgaacttccagcagccggcggacgcggagcgtgctttg 181
||||| |||||||| || ||||| |||| |||||| |||| |||||| |||| || ||
Sbjct: 66807455 cgctcgttgggctatgcatatgtcaactaccagcaaccggtggacgccaagcgggccctg 66807514
Query: 182 gacaccatgaattttgacgttataaagggcaagccagtacgcatcatgtggtctcagcgt 241
|| ||| |||| ||||| || || ||||||| |||||| |||||||||||||| |||||
Sbjct: 66807515 gagaccctgaactttgatgtcatcaagggcaggccagtgcgcatcatgtggtcccagcgg 66807574
Query: 242 gatccatcacttcgcaaaagtggagtgggcaac 274
|| || || || ||||| || || |||||||||
Sbjct: 66807575 gacccctcgctccgcaagagcggggtgggcaac 66807607
Score = 216 bits (109), Expect = 2e-53
Identities = 232/273 (84%)
Strand = Plus / Minus
Query: 2 atggcctcgctctacgtgggggacctacaccccgacgtgaccgaggcgatgctctacgag 61
|||||||||||||| ||||| ||||| ||||| || ||||| ||||| ||||| || |||
Sbjct: 66829737 atggcctcgctctatgtgggcgacctgcaccctgaggtgacggaggcaatgctgtatgag 66829678
Query: 62 aagttcagcccggccgggcccatcctctccatccgggtctgcagggacatgatcacccgc 121
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 66829677 aagttcagcccggccgggcccatcctctccatccgcatctgcagggacaagatcacccgc 66829618
Query: 122 cgctccttgggctacgcgtatgtgaacttccagcagccggcggacgcggagcgtgctttg 181
||||| |||||||| || ||||| |||| |||||| |||| |||||| |||| || ||
Sbjct: 66829617 cgctcgttgggctatgcatatgtcaactaccagcaaccggtggacgccaagcgggccctg 66829558
Query: 182 gacaccatgaattttgacgttataaagggcaagccagtacgcatcatgtggtctcagcgt 241
|| ||| |||| ||||| || || ||||||| |||||| |||||||||||||| |||||
Sbjct: 66829557 gagaccctgaactttgatgtcatcaagggcaggccagtgcgcatcatgtggtcccagcgg 66829498
Query: 242 gatccatcacttcgcaaaagtggagtgggcaac 274
|| || || || ||||| || || |||||||||
Sbjct: 66829497 gacccctcgctccgcaagagcggggtgggcaac 66829465
Score = 69.9 bits (35), Expect = 3e-09
Identities = 206/263 (78%)
Strand = Plus / Minus
Query: 194 tttgacgttataaagggcaagccagtacgcatcatgtggtctcagcgtgatccatcactt 253
|||||| |||| || ||||||||| | | || |||||||| ||||||| |||||||||
Sbjct: 81223690 tttgacattattaatggcaagccactgggtattatgtggtcctagcgtgacccatcactt 81223631
Query: 254 cgcaaaagtggagtgggcaacatattcattaaaaatttggacaaatccattgataataaa 313
|| || || ||||||||||| |||||||| |||||| | | || || |||||||| ||
Sbjct: 81223630 cgtaagagcggagtgggcaatatattcatcaaaaatcttgcgaagtctattgataacaag 81223571
Query: 314 gcactgtatgatacattttcagcttttggtaacatcctttcatgtaaggtggtttgtgat 373
| || |||| || |||| | ||||| | ||| ||||| ||||| || || |||
Sbjct: 81223570 gacctttatgtgactttttttgtctttggaagcattctttcttgtaaagtagtaaccgat 81223511
Query: 374 gaaaatggttccaagggttatggatttgtgcattttgagacacaagaagcagctgaaaga 433
|||||||| || | |||| ||||||||||||||||||| || |||||| |||| |||
Sbjct: 81223510 gaaaatggatcaagaggtttcggatttgtgcattttgagaaaccagaagccgctggaagc 81223451
Query: 434 gctattgaaaaaatgaatgggat 456
|| |||||||| |||||||||||
Sbjct: 81223450 gccattgaaaagatgaatgggat 81223428
>gb|GL892814.2| Sus scrofa unplaced genomic scaffold ChrUScaf699
Length = 16092
Score = 523 bits (264), Expect = e-146
Identities = 478/545 (87%), Gaps = 7/545 (1%)
Strand = Plus / Plus
Query: 334 agcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggtta 393
|||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6239 agcttttgataatatcctttcatgtaaggtggtttgtgatgaaaattgttccaagggtta 6298
Query: 394 tggatttgtgcattttgagacacaagaagcagctgaaagagctattgaaaaaatgaatgg 453
||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 6299 atgatttttgcattctgagacaaaagaagcagctgaaagagctattgaaaaaattaatgg 6358
Query: 454 gatgcttctaaatgatcgaaaagtattcgttggacgatttaagtctcgtaaagaacgaga 513
|||| ||||||||||| | |||||||| ||||| | |||| | | |||||||| ||||
Sbjct: 6359 gatgattctaaatgatggcaaagtatttattggatgtattaaattttgtaaagaatgaga 6418
Query: 514 agccgaacttggagctagggcaaaagagttcaccaatgtttacatcaagaattttggaga 573
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 6419 agcagaacttggagctagggcaaaaaagttcaccaatgtttacatcaagaattttggaaa 6478
Query: 574 agacatggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgt 633
| | |||||||| |||||| ||||| ||||||||||||||||||||| | ||
Sbjct: 6479 aaatccagatgatgaatatcttaagcctctctatggcaagtttggacctgccttca-tgg 6537
Query: 634 gaaagtaatgactgacgagagtggaaaatccaaaggttttggatttgtaagctttgaaag 693
||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||||||
Sbjct: 6538 gaaagtaatgactgaagagagtagaaaatccaaaggtttgggatttataagctttgaaag 6597
Query: 694 gcatgaagatgcacagaaagccgtagatgaaatgaatggaaaggagctcaatggaaaaca 753
|||||||||| |||||||||| || ||||| |||||||||||||||||||||||| |
Sbjct: 6598 gcatgaagatacacagaaagctgtggatgagatgaatggaaaggagctcaatgga----a 6653
Query: 754 aatttacgtcggtcgagcccagaaaaaa-gtggaacggcagacggaacttaagcgcaaat 812
|||||| || ||| |||||||||||||| ||||| |||||| ||||||||| | |||||
Sbjct: 6654 aatttatgttggttgagcccagaaaaaatatggaatggcagatggaacttaa-cacaaat 6712
Query: 813 ttgaacagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaa 872
|||||||||||| |||||||||||||| ||||||||| | ||| ||||||| |||||||
Sbjct: 6713 ttgaacagatgactcaagataggatcacaagataccagagagttgacctttacgtgaaaa 6772
Query: 873 atctt 877
|||||
Sbjct: 6773 atctt 6777
Score = 137 bits (69), Expect = 2e-29
Identities = 153/181 (84%)
Strand = Plus / Plus
Query: 124 ctccttgggctacgcgtatgtgaacttccagcagccggcggacgcggagcgtgctttgga 183
||||||||||||| |||||| | |||||||||| | | |||| | ||| |||||| ||
Sbjct: 5838 ctccttgggctacttgtatgtaatcttccagcagacagtggacaggcagcatgctttaga 5897
Query: 184 caccatgaattttgacgttataaagggcaagccagtacgcatcatgtggtctcagcgtga 243
||||||||||||||| ||||||||| ||||||||||| | ||| ||||||||||| |||
Sbjct: 5898 caccatgaattttgatgttataaagagcaagccagtaagagtcacgtggtctcagcatga 5957
Query: 244 tccatcacttcgcaaaagtggagtgggcaacatattcattaaaaatttggacaaatccat 303
|||||||||| ||||||||| | || |||||| || ||||||| || ||||||||||||
Sbjct: 5958 tccatcactttgcaaaagtgaaatgagcaacaaatacattaaattttgggacaaatccat 6017
Query: 304 t 304
|
Sbjct: 6018 t 6018
Score = 107 bits (54), Expect = 1e-20
Identities = 78/85 (91%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 867 tgaaaaatcttgatgatggtattgatgatgaacgtctccggaaagagttttctccatttg 926
|||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||
Sbjct: 7043 tgaaaaatcttgatgatgctattgatgatgaatgtctctgga--gagttttctccatttg 7100
Query: 927 gtgcaatcactagtgcaaaggttat 951
|| ||||||||||||||||| ||||
Sbjct: 7101 gtacaatcactagtgcaaagattat 7125
>Sscrofa_Chr11
|| Length = 87690581
Score = 523 bits (264), Expect = e-146
Identities = 478/545 (87%), Gaps = 7/545 (1%)
Strand = Plus / Minus
Query: 334 agcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggtta 393
|||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 36578023 agcttttgataatatcctttcatgtaaggtggtttgtgatgaaaattgttccaagggtta 36577964
Query: 394 tggatttgtgcattttgagacacaagaagcagctgaaagagctattgaaaaaatgaatgg 453
||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 36577963 atgatttttgcattctgagacaaaagaagcagctgaaagagctattgaaaaaattaatgg 36577904
Query: 454 gatgcttctaaatgatcgaaaagtattcgttggacgatttaagtctcgtaaagaacgaga 513
|||| ||||||||||| | |||||||| ||||| | |||| | | |||||||| ||||
Sbjct: 36577903 gatgattctaaatgatggcaaagtatttattggatgtattaaattttgtaaagaatgaga 36577844
Query: 514 agccgaacttggagctagggcaaaagagttcaccaatgtttacatcaagaattttggaga 573
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 36577843 agcagaacttggagctagggcaaaaaagttcaccaatgtttacatcaagaattttggaaa 36577784
Query: 574 agacatggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgt 633
| | |||||||| |||||| ||||| ||||||||||||||||||||| | ||
Sbjct: 36577783 aaatccagatgatgaatatcttaagcctctctatggcaagtttggacctgccttca-tgg 36577725
Query: 634 gaaagtaatgactgacgagagtggaaaatccaaaggttttggatttgtaagctttgaaag 693
||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||||||
Sbjct: 36577724 gaaagtaatgactgaagagagtagaaaatccaaaggtttgggatttataagctttgaaag 36577665
Query: 694 gcatgaagatgcacagaaagccgtagatgaaatgaatggaaaggagctcaatggaaaaca 753
|||||||||| |||||||||| || ||||| |||||||||||||||||||||||| |
Sbjct: 36577664 gcatgaagatacacagaaagctgtggatgagatgaatggaaaggagctcaatgga----a 36577609
Query: 754 aatttacgtcggtcgagcccagaaaaaa-gtggaacggcagacggaacttaagcgcaaat 812
|||||| || ||| |||||||||||||| ||||| |||||| ||||||||| | |||||
Sbjct: 36577608 aatttatgttggttgagcccagaaaaaatatggaatggcagatggaacttaa-cacaaat 36577550
Query: 813 ttgaacagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaa 872
|||||||||||| |||||||||||||| ||||||||| | ||| ||||||| |||||||
Sbjct: 36577549 ttgaacagatgactcaagataggatcacaagataccagagagttgacctttacgtgaaaa 36577490
Query: 873 atctt 877
|||||
Sbjct: 36577489 atctt 36577485
Score = 137 bits (69), Expect = 2e-29
Identities = 153/181 (84%)
Strand = Plus / Minus
Query: 124 ctccttgggctacgcgtatgtgaacttccagcagccggcggacgcggagcgtgctttgga 183
||||||||||||| |||||| | |||||||||| | | |||| | ||| |||||| ||
Sbjct: 36578487 ctccttgggctacttgtatgtaatcttccagcagacagtggacaggcagcatgctttaga 36578428
Query: 184 caccatgaattttgacgttataaagggcaagccagtacgcatcatgtggtctcagcgtga 243
||||||||||||||| ||||||||| ||||||||||| | ||| ||||||||||| |||
Sbjct: 36578427 caccatgaattttgatgttataaagagcaagccagtaagagtcacgtggtctcagcatga 36578368
Query: 244 tccatcacttcgcaaaagtggagtgggcaacatattcattaaaaatttggacaaatccat 303
|||||||||| ||||||||| | || |||||| || ||||||| || ||||||||||||
Sbjct: 36578367 tccatcactttgcaaaagtgaaatgagcaacaaatacattaaattttgggacaaatccat 36578308
Query: 304 t 304
|
Sbjct: 36578307 t 36578307
Score = 135 bits (68), Expect = 7e-29
Identities = 223/270 (82%), Gaps = 5/270 (1%)
Strand = Plus / Minus
Query: 982 ttttgtttgtttcccctccccagaagaagccactaaagcagttacagaaatgaatggtag 1041
|||||| |||||| ||||| ||||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 36570738 ttttgtatgtttctcctcctcagaagaagccacaaaagcagttgcagaaattaatggtag 36570679
Query: 1042 aattgtggccaccaagccattgtatgtagctttagctcagcgcaaagaagagcgccaagc 1101
||| ||||| |||||| |||||||||||||||| |||| ||||||| ||| |
Sbjct: 36570678 aatagtggctt--aagccacaac-tgtagctttagctcagggcaa-gaagagcaccaggt 36570623
Query: 1102 ccacctcactaaccagtatatgcagaaaatggcaagtgaaaaagctgtgcccaaccctgt 1161
|||| |||||||||| |||||||| || ||||||| || |||||||| || ||||||
Sbjct: 36570622 ttacctaactaaccagtgtatgcagagaacagcaagtgtaagagctgtgctcagccctgt 36570563
Query: 1162 aatcaaccc-ctaacagccagcaccctcttnaagttacttcatggcacctatcccacaaa 1220
||||||||| ||| |||||||||| ||| | |||| ||||||||| |||||||||| |
Sbjct: 36570562 aatcaaccctctaccagccagcacttccttcaggttatttcatggcagctatcccacaga 36570503
Query: 1221 ctccgaaccgtcctgcatactatcctccta 1250
||| ||| | ||||||||||||||||||
Sbjct: 36570502 ctcagaagcaggctgcatactatcctccta 36570473
Score = 107 bits (54), Expect = 1e-20
Identities = 78/85 (91%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 867 tgaaaaatcttgatgatggtattgatgatgaacgtctccggaaagagttttctccatttg 926
|||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||
Sbjct: 36577218 tgaaaaatcttgatgatgctattgatgatgaatgtctctgga--gagttttctccatttg 36577161
Query: 927 gtgcaatcactagtgcaaaggttat 951
|| ||||||||||||||||| ||||
Sbjct: 36577160 gtacaatcactagtgcaaagattat 36577136
>Sscrofa_Chr04
|| Length = 143465943
Score = 458 bits (231), Expect = e-126
Identities = 263/274 (95%)
Strand = Plus / Plus
Query: 945 aggttatgatggagggtggtcgcagcaaaggtttcggttttgtttgtttcccctccccag 1004
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 39147867 aggttatgatggagggtggtcgcagcaaaggtttcggttttgtttgtttctcctccccag 39147926
Query: 1005 aagaagccactaaagcagttacagaaatgaatggtagaattgtggccaccaagccattgt 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39147927 aagaagccactaaagcagttacagaaatgaatggtagaattgtggccaccaagccattgt 39147986
Query: 1065 atgtagctttagctcagcgcaaagaagagcgccaagcccacctcactaaccagtatatgc 1124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 39147987 atgtagctttagctcagcgcaaagaagagcgccaggcccacctcactaaccagtatatgc 39148046
Query: 1125 agaaaatggcaagtgaaaaagctgtgcccaaccctgtaatcaacccctaacagccagcac 1184
||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 39148047 agagaatggcaagtgtaagagctgtgcccaaccctgtaatcaacccctaccagccagcac 39148106
Query: 1185 cctcttnaagttacttcatggcacctatcccaca 1218
| ||| | |||||||||||||| ||||||||||
Sbjct: 39148107 ctccttcaggttacttcatggcagctatcccaca 39148140
Score = 383 bits (193), Expect = e-103
Identities = 196/197 (99%)
Strand = Plus / Plus
Query: 167 gcggagcgtgctttggacaccatgaattttgacgttataaagggcaagccagtacgcatc 226
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 39137436 gcggagcgtgctttggacaccatgaattttgatgttataaagggcaagccagtacgcatc 39137495
Query: 227 atgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaacatattcattaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39137496 atgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaacatattcattaaa 39137555
Query: 287 aatttggacaaatccattgataataaagcactgtatgatacattttcagcttttggtaac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39137556 aatttggacaaatccattgataataaagcactgtatgatacattttcagcttttggtaac 39137615
Query: 347 atcctttcatgtaaggt 363
|||||||||||||||||
Sbjct: 39137616 atcctttcatgtaaggt 39137632
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 2 atggcctcgctctacgtgggggacctacaccccgacgtgaccgaggcgatgctctacgag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39134165 atggcctcgctctacgtgggggacctacaccccgacgtgaccgaggcgatgctctacgag 39134224
Query: 62 aagttcagcccggccgggcccatcctctccatccgggtctgcagggacatgatcacccgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39134225 aagttcagcccggccgggcccatcctctccatccgggtctgcagggacatgatcacccgc 39134284
Query: 122 cgctccttgggctacgcgtatgtgaacttccagcagccggcggacg 167
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39134285 cgctccttgggctacgcgtatgtgaacttccagcagccggcggacg 39134330
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 478 attcgttggacgatttaagtctcgtaaagaacgagaagccgaacttggagctagggcaaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39140821 attcgttggacgatttaagtctcgtaaagaacgagaagccgaacttggagctagggcaaa 39140880
Query: 538 agagttcaccaatgtttacatcaagaattttggagaagacatggatgatgagcgccttaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39140881 agagttcaccaatgtttacatcaagaattttggagaagacatggatgatgagcgccttaa 39140940
Query: 598 ggatctctttggcaagtttgg 618
|||||||||||||||||||||
Sbjct: 39140941 ggatctctttggcaagtttgg 39140961
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 713 gccgtagatgaaatgaatggaaaggagctcaatggaaaacaaatttacgtcggtcgagcc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39143287 gccgtagatgaaatgaatggaaaggagctcaatggaaaacaaatttacgtcggtcgagcc 39143346
Query: 773 cagaaaaaagtggaacggcagacggaacttaagcgcaaatttgaacagatgaagcaagat 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39143347 cagaaaaaagtggaacggcagacggaacttaagcgcaaatttgaacagatgaagcaagat 39143406
Query: 833 aggatcaccagataccagg 851
|||||||||||||||||||
Sbjct: 39143407 aggatcaccagataccagg 39143425
Score = 234 bits (118), Expect = 9e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 360 aggtggtttgtgatgaaaatggttccaagggttatggatttgtgcattttgagacacaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39137835 aggtggtttgtgatgaaaatggttccaagggttatggatttgtgcattttgagacacaag 39137894
Query: 420 aagcagctgaaagagctattgaaaaaatgaatgggatgcttctaaatgatcgaaaagt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39137895 aagcagctgaaagagctattgaaaaaatgaatgggatgcttctaaatgatcgaaaagt 39137952
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 617 ggacctgccttaagtgtgaaagtaatgactgacgagagtggaaaatccaaaggttttgga 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39142606 ggacctgccttaagtgtgaaagtaatgactgacgagagtggaaaatccaaaggttttgga 39142665
Query: 677 tttgtaagctttgaaaggcatgaagatgcacagaaag 713
|||||||||||||||||||||||||||||||||||||
Sbjct: 39142666 tttgtaagctttgaaaggcatgaagatgcacagaaag 39142702
Score = 190 bits (96), Expect = 1e-45
Identities = 99/100 (99%)
Strand = Plus / Plus
Query: 849 agggtgttaacctttatgtgaaaaatcttgatgatggtattgatgatgaacgtctccgga 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39143609 agggtgttaacctttatgtgaaaaatcttgatgatggtattgatgatgaacgtctccgga 39143668
Query: 909 aagagttttctccatttggtgcaatcactagtgcaaaggt 948
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 39143669 aagagttttctccatttggtacaatcactagtgcaaaggt 39143708
>Sscrofa_Chr06
|| Length = 157765593
Score = 115 bits (58), Expect = 6e-23
Identities = 139/166 (83%)
Strand = Plus / Minus
Query: 2 atggcctcgctctacgtgggggacctacaccccgacgtgaccgaggcgatgctctacgag 61
|||||||| || |||||||| ||||| ||| | ||||| |||||||| ||||| |||||
Sbjct: 88485009 atggcctccctgtacgtgggtgacctgcactcggacgtcaccgaggccatgctgtacgaa 88484950
Query: 62 aagttcagcccggccgggcccatcctctccatccgggtctgcagggacatgatcacccgc 121
|||||||| || || ||||| | || ||||||||||||||| | || ||||||||||||
Sbjct: 88484949 aagttcagtcctgcggggcctgtgctgtccatccgggtctgccgcgatatgatcacccgc 88484890
Query: 122 cgctccttgggctacgcgtatgtgaacttccagcagccggcggacg 167
|||||| |||| || || || || ||||||||||||||||| ||||
Sbjct: 88484889 cgctccctgggttatgcctacgtcaacttccagcagccggctgacg 88484844
Score = 73.8 bits (37), Expect = 2e-10
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 489 gatttaagtctcgtaaagaacgagaagccgaacttggagctagggcaaaagagttcacca 548
|||| |||||||| ||||| |||||||| || |||||||| | || || || |||||||
Sbjct: 88479053 gattcaagtctcgaaaagagcgagaagctgagcttggagccaaagccaaggaattcacca 88478994
Query: 549 atgtttacatcaagaattttggagaagacatggatgatgag 589
||||||| ||||| || ||||||||||| |||||||||||
Sbjct: 88478993 atgtttatatcaaaaactttggagaagaggtggatgatgag 88478953
>Sscrofa_Chr17
|| Length = 69701581
Score = 109 bits (55), Expect = 4e-21
Identities = 130/155 (83%)
Strand = Plus / Plus
Query: 5 gcctcgctctacgtgggggacctacaccccgacgtgaccgaggcgatgctctacgagaag 64
||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct: 52817533 gcctcgctctacgtgggcgacctgcaccccgacgtgacggaggccatgctctatgagaag 52817592
Query: 65 ttcagcccggccgggcccatcctctccatccgggtctgcagggacatgatcacccgccgc 124
||| || ||||| |||||||| |||||||| || ||| | ||| || ||||||||||
Sbjct: 52817593 ttctcgcccgccggccccatcctgtccatccgcgtgtgccgcgacgtggccacccgccgc 52817652
Query: 125 tccttgggctacgcgtatgtgaacttccagcagcc 159
|| ||||||| || || | ||||||||||||||
Sbjct: 52817653 tcgctgggctatgcctacatcaacttccagcagcc 52817687
Score = 63.9 bits (32), Expect = 2e-07
Identities = 113/140 (80%)
Strand = Plus / Plus
Query: 956 gagggtggtcgcagcaaaggtttcggttttgtttgtttcccctccccagaagaagccact 1015
|||||||| | ||||||||| || || ||||| ||||| |||| |||||||| || ||
Sbjct: 52835056 gagggtggccacagcaaagggtttggctttgtgtgtttttcctctccagaagaggcgacg 52835115
Query: 1016 aaagcagttacagaaatgaatggtagaattgtggccaccaagccattgtatgtagcttta 1075
|| || || ||||| |||||||| | || |||| |||||||||| ||||||| ||| |
Sbjct: 52835116 aaggccgtgacagagatgaatgggcgcatcgtgggcaccaagccactgtatgtggctctg 52835175
Query: 1076 gctcagcgcaaagaagagcg 1095
|| ||||||||||| |||||
Sbjct: 52835176 gcccagcgcaaagaggagcg 52835195
>Sscrofa_Chr08
|| Length = 148491826
Score = 69.9 bits (35), Expect = 3e-09
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 539 gagttcaccaatgtttacatcaagaattttggagaagacatggatgatgag 589
||||||||||||||||||||||| || || ||||| |||||||||||||||
Sbjct: 98134703 gagttcaccaatgtttacatcaaaaacttcggagatgacatggatgatgag 98134753
Score = 69.9 bits (35), Expect = 3e-09
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 539 gagttcaccaatgtttacatcaagaattttggagaagacatggatgatgag 589
||||||||||||||||||||||| || || ||||| |||||||||||||||
Sbjct: 98245390 gagttcaccaatgtttacatcaaaaacttcggagatgacatggatgatgag 98245440
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,011,143
Number of extensions: 262
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 29
Length of query: 1261
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1240
Effective length of database: 2,808,413,156
Effective search space: 3482432313440
Effective search space used: 3482432313440
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)