Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013210
(1218 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539369.2| PREDICTED: similar to Exocyst complex component... 704 0.0
>ref|XP_539369.2| PREDICTED: similar to Exocyst complex component Sec8 [Canis
familiaris].
Length = 975
Score = 704 bits (1816), Expect = 0.0
Identities = 361/398 (90%), Positives = 370/398 (92%)
Frame = +2
Query: 23 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 202
MAAE AGGKYR TVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE
Sbjct: 1 MAAEAAGGKYRGTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 60
Query: 203 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 382
LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE
Sbjct: 61 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 120
Query: 383 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 562
HKHVLNLLDEIENIKQVPQKLEQCM SKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE
Sbjct: 121 HKHVLNLLDEIENIKQVPQKLEQCMVSKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 180
Query: 563 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 742
LHSKKMNLHLVLIDELHRHLYIKSTSRVVQ+NKEKGR+SSL+KDASPVPL+DVTNLPTPR
Sbjct: 181 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGRVSSLIKDASPVPLIDVTNLPTPR 240
Query: 743 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMXXXXXXXXXXXXXPETVKAI 922
KFLDTSQYSTPGSSS +EI+LQDIKEDLELDPEENSTLFM PETVKAI
Sbjct: 241 KFLDTSQYSTPGSSSAREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAI 300
Query: 923 KERLEQELKQIVKRSTTQVADSGYQRGENITAENQPRXXXXXXXXXFDKFNAVATAHSVV 1102
KERLEQEL+QIVKRSTTQVADSGYQRGE++T ENQPR FDKFNAVATAHSVV
Sbjct: 301 KERLEQELQQIVKRSTTQVADSGYQRGESLTVENQPRLLLELLELLFDKFNAVATAHSVV 360
Query: 1103 LGYLQDTVVTPLTQQEDVKLYDMADVWVKIQDVLQMLL 1216
LGYLQDTVV PLTQQEDVKLYDMADVWVKIQDVLQMLL
Sbjct: 361 LGYLQDTVVAPLTQQEDVKLYDMADVWVKIQDVLQMLL 398
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,643,324
Number of extensions: 1319519
Number of successful extensions: 5198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5158
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 301
Effective length of database: 15,374,224
Effective search space: 4627641424
Effective search space used: 4627641424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013210
(1218 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095677.1| exocyst complex component 4 [Bos taurus]. 716 0.0
Alignment gi|XP_002704184.1| PREDICTED: SEC8 protein-like, partial [Bos t... 618 e-177
>ref|NP_001095677.1| exocyst complex component 4 [Bos taurus].
Length = 975
Score = 716 bits (1849), Expect = 0.0
Identities = 371/398 (93%), Positives = 374/398 (93%)
Frame = +2
Query: 23 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 202
MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYE+CDRDLDE
Sbjct: 1 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYERCDRDLDE 60
Query: 203 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 382
LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE
Sbjct: 61 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 120
Query: 383 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 562
HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE
Sbjct: 121 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 180
Query: 563 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 742
LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR
Sbjct: 181 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 240
Query: 743 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMXXXXXXXXXXXXXPETVKAI 922
KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFM PETVKAI
Sbjct: 241 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAI 300
Query: 923 KERLEQELKQIVKRSTTQVADSGYQRGENITAENQPRXXXXXXXXXFDKFNAVATAHSVV 1102
ERLEQELKQIVKRSTTQVADS YQRGEN+TAENQPR FDKFNAVATAHSVV
Sbjct: 301 TERLEQELKQIVKRSTTQVADSDYQRGENLTAENQPRLLLELLELLFDKFNAVATAHSVV 360
Query: 1103 LGYLQDTVVTPLTQQEDVKLYDMADVWVKIQDVLQMLL 1216
LGYLQDTVVTPL+QQEDVKLYDMADVWVKIQDVLQMLL
Sbjct: 361 LGYLQDTVVTPLSQQEDVKLYDMADVWVKIQDVLQMLL 398
>ref|XP_002704184.1| PREDICTED: SEC8 protein-like, partial [Bos taurus].
Length = 336
Score = 618 bits (1594), Expect = e-177
Identities = 319/336 (94%), Positives = 321/336 (95%)
Frame = +2
Query: 23 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 202
MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYE+CDRDLDE
Sbjct: 1 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYERCDRDLDE 60
Query: 203 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 382
LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE
Sbjct: 61 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 120
Query: 383 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 562
HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE
Sbjct: 121 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 180
Query: 563 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 742
LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR
Sbjct: 181 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 240
Query: 743 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMXXXXXXXXXXXXXPETVKAI 922
KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFM PETVKAI
Sbjct: 241 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAI 300
Query: 923 KERLEQELKQIVKRSTTQVADSGYQRGENITAENQP 1030
ERLEQELKQIVKRSTTQVADS YQRGEN+TAENQP
Sbjct: 301 TERLEQELKQIVKRSTTQVADSDYQRGENLTAENQP 336
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,679,028
Number of extensions: 1289190
Number of successful extensions: 5059
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5016
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,207,134
Effective search space: 4276347334
Effective search space used: 4276347334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013210
(1218 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360183.1| PREDICTED: exocyst complex component 4-like ... 720 0.0
Alignment gi|XP_003134713.2| PREDICTED: hypothetical protein LOC100511483... 120 2e-27
>ref|XP_003360183.1| PREDICTED: exocyst complex component 4-like [Sus scrofa].
Length = 583
Score = 720 bits (1859), Expect = 0.0
Identities = 373/396 (94%), Positives = 374/396 (94%)
Frame = +2
Query: 23 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 202
MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE
Sbjct: 1 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 60
Query: 203 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 382
LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE
Sbjct: 61 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 120
Query: 383 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 562
HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE
Sbjct: 121 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 180
Query: 563 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 742
LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR
Sbjct: 181 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 240
Query: 743 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMXXXXXXXXXXXXXPETVKAI 922
KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFM PETVKAI
Sbjct: 241 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAI 300
Query: 923 KERLEQELKQIVKRSTTQVADSGYQRGENITAENQPRXXXXXXXXXFDKFNAVATAHSVV 1102
KERLEQELKQIVKRSTTQVADSGYQRGENITAENQPR FDKFNAVATAHSVV
Sbjct: 301 KERLEQELKQIVKRSTTQVADSGYQRGENITAENQPRLLLELLELLFDKFNAVATAHSVV 360
Query: 1103 LGYLQDTVVTPLTQQEDVKLYDMADVWVKIQDVLQM 1210
LGYLQDTVVTPLTQQEDVKLYDMADVWVKIQDVLQ+
Sbjct: 361 LGYLQDTVVTPLTQQEDVKLYDMADVWVKIQDVLQV 396
>ref|XP_003134713.2| PREDICTED: hypothetical protein LOC100511483 [Sus scrofa].
Length = 358
Score = 120 bits (301), Expect = 2e-27
Identities = 61/61 (100%), Positives = 61/61 (100%)
Frame = +2
Query: 494 VSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGR 673
VSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGR
Sbjct: 71 VSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGR 130
Query: 674 M 676
M
Sbjct: 131 M 131
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,034,325
Number of extensions: 823155
Number of successful extensions: 3156
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3142
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,829,335
Effective search space: 2692947175
Effective search space used: 2692947175
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013210
(1218 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033174.2| exocyst complex component 4 [Mus musculus]. 674 0.0
>ref|NP_033174.2| exocyst complex component 4 [Mus musculus].
Length = 975
Score = 674 bits (1739), Expect = 0.0
Identities = 346/398 (86%), Positives = 362/398 (90%)
Frame = +2
Query: 23 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 202
MAAE AGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE
Sbjct: 1 MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 60
Query: 203 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 382
LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE
Sbjct: 61 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 120
Query: 383 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 562
HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE
Sbjct: 121 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 180
Query: 563 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 742
LHSKKMNLHLVLI+ELHRHLYIKSTSRVVQ+NKEKG+MSS KD SP PL+DV+N+PTPR
Sbjct: 181 LHSKKMNLHLVLIEELHRHLYIKSTSRVVQRNKEKGKMSSHGKDPSPGPLIDVSNIPTPR 240
Query: 743 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMXXXXXXXXXXXXXPETVKAI 922
KFLD SQYS G SSV+E++LQD+KEDLE DPEENSTLFM PETVKAI
Sbjct: 241 KFLDASQYSAAGGSSVREMNLQDVKEDLECDPEENSTLFMGILIQGLARLKKIPETVKAI 300
Query: 923 KERLEQELKQIVKRSTTQVADSGYQRGENITAENQPRXXXXXXXXXFDKFNAVATAHSVV 1102
KERLEQELKQIVKRSTTQVADS YQRGE++T +NQPR FDKFNAVATAHSVV
Sbjct: 301 KERLEQELKQIVKRSTTQVADSAYQRGESLTVDNQPRLLLELLELLFDKFNAVATAHSVV 360
Query: 1103 LGYLQDTVVTPLTQQEDVKLYDMADVWVKIQDVLQMLL 1216
LGYLQD+V T LTQQE++KLYDMADVWVKIQDVLQMLL
Sbjct: 361 LGYLQDSVGTQLTQQEEIKLYDMADVWVKIQDVLQMLL 398
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,623,409
Number of extensions: 1105472
Number of successful extensions: 4096
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4054
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 302
Effective length of database: 12,493,815
Effective search space: 3773132130
Effective search space used: 3773132130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013210
(1218 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032203.1| exocyst complex component 4 isoform b [Homo ... 696 0.0
Alignment gi|NP_068579.3| exocyst complex component 4 isoform a [Homo sap... 696 0.0
>ref|NP_001032203.1| exocyst complex component 4 isoform b [Homo sapiens].
Length = 473
Score = 696 bits (1795), Expect = 0.0
Identities = 361/398 (90%), Positives = 369/398 (92%)
Frame = +2
Query: 23 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 202
MAAE AGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE
Sbjct: 1 MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 60
Query: 203 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 382
LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE
Sbjct: 61 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 120
Query: 383 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 562
HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE
Sbjct: 121 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 180
Query: 563 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 742
LHSKKMNLHLVLIDELHRHLYIKSTSRVVQ+NKEKG++SSLVKDAS VPL+DVTNLPTPR
Sbjct: 181 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDAS-VPLIDVTNLPTPR 239
Query: 743 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMXXXXXXXXXXXXXPETVKAI 922
KFLDTS YST GSSSV+EI+LQDIKEDLELDPEENSTLFM PETVKAI
Sbjct: 240 KFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAI 299
Query: 923 KERLEQELKQIVKRSTTQVADSGYQRGENITAENQPRXXXXXXXXXFDKFNAVATAHSVV 1102
ERLEQELKQIVKRSTTQVADSGYQRGEN+T ENQPR FDKFNAVA AHSVV
Sbjct: 300 IERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVV 359
Query: 1103 LGYLQDTVVTPLTQQEDVKLYDMADVWVKIQDVLQMLL 1216
LGYLQDTVVTPLTQQED+KLYDMADVWVKIQDVLQMLL
Sbjct: 360 LGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLL 397
>ref|NP_068579.3| exocyst complex component 4 isoform a [Homo sapiens].
Length = 974
Score = 696 bits (1795), Expect = 0.0
Identities = 361/398 (90%), Positives = 369/398 (92%)
Frame = +2
Query: 23 MAAEGAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 202
MAAE AGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE
Sbjct: 1 MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDE 60
Query: 203 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 382
LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE
Sbjct: 61 LIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIE 120
Query: 383 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 562
HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE
Sbjct: 121 HKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLE 180
Query: 563 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQQNKEKGRMSSLVKDASPVPLLDVTNLPTPR 742
LHSKKMNLHLVLIDELHRHLYIKSTSRVVQ+NKEKG++SSLVKDAS VPL+DVTNLPTPR
Sbjct: 181 LHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDAS-VPLIDVTNLPTPR 239
Query: 743 KFLDTSQYSTPGSSSVKEISLQDIKEDLELDPEENSTLFMXXXXXXXXXXXXXPETVKAI 922
KFLDTS YST GSSSV+EI+LQDIKEDLELDPEENSTLFM PETVKAI
Sbjct: 240 KFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAI 299
Query: 923 KERLEQELKQIVKRSTTQVADSGYQRGENITAENQPRXXXXXXXXXFDKFNAVATAHSVV 1102
ERLEQELKQIVKRSTTQVADSGYQRGEN+T ENQPR FDKFNAVA AHSVV
Sbjct: 300 IERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVV 359
Query: 1103 LGYLQDTVVTPLTQQEDVKLYDMADVWVKIQDVLQMLL 1216
LGYLQDTVVTPLTQQED+KLYDMADVWVKIQDVLQMLL
Sbjct: 360 LGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLL 397
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,844,428
Number of extensions: 1310850
Number of successful extensions: 4909
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4858
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,835,944
Effective search space: 4465619144
Effective search space used: 4465619144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013210
(1218 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 490 e-135
>Sscrofa_Chr18
|| Length = 61220071
Score = 490 bits (247), Expect = e-135
Identities = 247/247 (100%)
Strand = Plus / Minus
Query: 788 gtgaaggagataagcctccaggacatcaaggaagatttggaattggatccggaagagaat 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16840737 gtgaaggagataagcctccaggacatcaaggaagatttggaattggatccggaagagaat 16840678
Query: 848 agcactctttttatgggcattctcatcaaggggctggccaaactgaagaagattccagag 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16840677 agcactctttttatgggcattctcatcaaggggctggccaaactgaagaagattccagag 16840618
Query: 908 acagtgaaggcaatcaaagaacgcttggagcaggagctgaagcaaattgtgaagaggtcc 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16840617 acagtgaaggcaatcaaagaacgcttggagcaggagctgaagcaaattgtgaagaggtcc 16840558
Query: 968 acaacccaggtggccgacagtggctaccagaggggagagaacatcactgctgagaaccaa 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16840557 acaacccaggtggccgacagtggctaccagaggggagagaacatcactgctgagaaccaa 16840498
Query: 1028 ccaaggt 1034
|||||||
Sbjct: 16840497 ccaaggt 16840491
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Minus
Query: 295 gcaggtgaaggagaatctgctttcatgtaagatgctgttgcactgcaaacgagacgaact 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16898333 gcaggtgaaggagaatctgctttcatgtaagatgctgttgcactgcaaacgagacgaact 16898274
Query: 355 gcggaagttgtggattgaagggattgaacataagcatgtcctgaacctgctggatgaaat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16898273 gcggaagttgtggattgaagggattgaacataagcatgtcctgaacctgctggatgaaat 16898214
Query: 415 cgagaatatcaagcaagtgcctcaaaagctggaacagtgcatggcgagcaagcactacct 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16898213 cgagaatatcaagcaagtgcctcaaaagctggaacagtgcatggcgagcaagcactacct 16898154
Query: 475 cagtgccaccgacatgctggt 495
|||||||||||||||||||||
Sbjct: 16898153 cagtgccaccgacatgctggt 16898133
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 106 caggaccctctcgaccagtgatgacgttgaagaccgagaaaacgagaaggggcgcctgga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16911626 caggaccctctcgaccagtgatgacgttgaagaccgagaaaacgagaaggggcgcctgga 16911567
Query: 166 agaggcctacgagaagtgtgaccgagacctggatgaactgatcgtgcagcactacacaga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16911566 agaggcctacgagaagtgtgaccgagacctggatgaactgatcgtgcagcactacacaga 16911507
Query: 226 actgacgacagccattcgcacgtaccagagcatcacagagcgcatcaccaactcccggaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16911506 actgacgacagccattcgcacgtaccagagcatcacagagcgcatcaccaactcccggaa 16911447
Query: 286 caagataaagcaggtg 301
||||||||||||||||
Sbjct: 16911446 caagataaagcaggtg 16911431
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 493 ggtgtcagcagtcgagtctttggagggccccttgctccaggtggaaggcctgagcgacct 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16876403 ggtgtcagcagtcgagtctttggagggccccttgctccaggtggaaggcctgagcgacct 16876344
Query: 553 caggttggagcttcacagcaagaagatgaaccttcacttggttctcatagatgaactgca 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16876343 caggttggagcttcacagcaagaagatgaaccttcacttggttctcatagatgaactgca 16876284
Query: 613 ccggcacctttatatcaagtccacgagccgagttgtgcagcagaacaaggaaaaggggag 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16876283 ccggcacctttatatcaagtccacgagccgagttgtgcagcagaacaaggaaaaggggag 16876224
Query: 673 gatgag 678
||||||
Sbjct: 16876223 gatgag 16876218
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 493 ggtgtcagcagtcgagtctttggagggccccttgctccaggtggaaggcctgagcgacct 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16982022 ggtgtcagcagtcgagtctttggagggccccttgctccaggtggaaggcctgagcgacct 16981963
Query: 553 caggttggagcttcacagcaagaagatgaaccttcacttggttctcatagatgaactgca 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16981962 caggttggagcttcacagcaagaagatgaaccttcacttggttctcatagatgaactgca 16981903
Query: 613 ccggcacctttatatcaagtccacgagccgagttgtgcagcagaacaaggaaaaggggag 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16981902 ccggcacctttatatcaagtccacgagccgagttgtgcagcagaacaaggaaaaggggag 16981843
Query: 673 gatgag 678
||||||
Sbjct: 16981842 gatgag 16981837
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 1031 aggttacttctagaactgctggagttgctgtttgacaagttcaatgctgttgccactgca 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16819597 aggttacttctagaactgctggagttgctgtttgacaagttcaatgctgttgccactgca 16819538
Query: 1091 cactctgtagtcctgggatacctgcaagacactgttgtgactccactgacgcagcaggaa 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16819537 cactctgtagtcctgggatacctgcaagacactgttgtgactccactgacgcagcaggaa 16819478
Query: 1151 gatgtcaaattgtatgacatggcagacgtgtgggtgaagatccaagatgttctgcag 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16819477 gatgtcaaattgtatgacatggcagacgtgtgggtgaagatccaagatgttctgcag 16819421
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 677 agctcccttgtgaaagatgcttctcctgttcctctacttgatgttacaaaccttcctact 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16862230 agctcccttgtgaaagatgcttctcctgttcctctacttgatgttacaaaccttcctact 16862171
Query: 737 cctcgaaaattcctcgacacctctcagtattctactccgggaagctcaagtg 788
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16862170 cctcgaaaattcctcgacacctctcagtattctactccgggaagctcaagtg 16862119
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 1 cgctctccccccgagtaccaagatggcggcagaaggagctggtgggaaatacagaagcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16935446 cgctctccccccgagtaccaagatggcggcagaaggagctggtgggaaatacagaagcac 16935387
Query: 61 agtcagcaaaagcaaagacccctcggggctgctcatctctgtgatcagg 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16935386 agtcagcaaaagcaaagacccctcggggctgctcatctctgtgatcagg 16935338
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,182,692
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 8
Length of query: 1218
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1197
Effective length of database: 2,808,413,156
Effective search space: 3361670547732
Effective search space used: 3361670547732
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)