Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013212
(1045 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091630.1| peptidyl-prolyl cis-trans isomerase E [Bos t... 564 e-161
Alignment gi|XP_002693235.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 246 3e-65
Alignment gi|XP_002701382.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 246 3e-65
Alignment gi|XP_002690562.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 239 4e-63
Alignment gi|XP_002690561.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 239 4e-63
Alignment gi|XP_001252498.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 239 4e-63
Alignment gi|NP_001001597.1| peptidyl-prolyl cis-trans isomerase F, mitoc... 238 7e-63
Alignment gi|XP_002686758.1| PREDICTED: TRIM5/CypA fusion protein-like [B... 229 3e-60
Alignment gi|XP_868977.1| PREDICTED: TRIM5/CypA fusion protein-like isofo... 229 3e-60
Alignment gi|NP_777017.1| E3 SUMO-protein ligase RanBP2 [Bos taurus]. 213 3e-55
>ref|NP_001091630.1| peptidyl-prolyl cis-trans isomerase E [Bos taurus].
Length = 301
Score = 564 bits (1454), Expect = e-161
Identities = 273/289 (94%), Positives = 276/289 (95%)
Frame = +1
Query: 37 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 216
GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 71
Query: 217 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXXPPKVETQEGEP 396
LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL PPKVETQEGEP
Sbjct: 72 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKVETQEGEP 131
Query: 397 TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 576
KKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR
Sbjct: 132 AVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 191
Query: 577 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 756
IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT
Sbjct: 192 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 251
Query: 757 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
CDKTDWLDGKHVVFGE+T+GLDVLRQIEAQGSKDGK KQKVIISDCGEY
Sbjct: 252 CDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGEY 300
>ref|XP_002693235.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Bos taurus].
Length = 124
Score = 246 bits (627), Expect = 3e-65
Identities = 114/119 (95%), Positives = 116/119 (97%)
Frame = +1
Query: 547 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 726
FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP
Sbjct: 5 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 64
Query: 727 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
NTNGSQF L CDKTDWLDGKHVVFGE+T+GLDVLRQIEAQGSKDGK KQKVIISDCGEY
Sbjct: 65 NTNGSQFLLMCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGEY 123
>ref|XP_002701382.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Bos taurus].
Length = 124
Score = 246 bits (627), Expect = 3e-65
Identities = 114/119 (95%), Positives = 116/119 (97%)
Frame = +1
Query: 547 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 726
FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP
Sbjct: 5 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 64
Query: 727 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
NTNGSQF L CDKTDWLDGKHVVFGE+T+GLDVLRQIEAQGSKDGK KQKVIISDCGEY
Sbjct: 65 NTNGSQFLLMCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGEY 123
>ref|XP_002690562.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like [Bos taurus].
Length = 164
Score = 239 bits (609), Expect = 4e-63
Identities = 108/161 (67%), Positives = 130/161 (80%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTGGKSIYG+KFDDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVFG+V EG++ + +E GS++GK + + I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKNITIADCGQ 163
>ref|XP_002690561.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like [Bos taurus].
Length = 164
Score = 239 bits (609), Expect = 4e-63
Identities = 108/161 (67%), Positives = 130/161 (80%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTGGKSIYG+KFDDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVFG+V EG++ + +E GS++GK + + I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKNITIADCGQ 163
>ref|XP_001252498.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like isoform 1 [Bos
taurus].
Length = 164
Score = 239 bits (609), Expect = 4e-63
Identities = 108/161 (67%), Positives = 130/161 (80%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTGGKSIYG+KFDDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVFG+V EG++ + +E GS++GK + + I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKNITIADCGQ 163
>ref|NP_001001597.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor [Bos
taurus].
Length = 209
Score = 238 bits (607), Expect = 7e-63
Identities = 108/163 (66%), Positives = 130/163 (79%)
Frame = +1
Query: 388 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 567
G + + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 36 GSHGSSSSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 95
Query: 568 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 747
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 96 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQF 155
Query: 748 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQK 876
F+ KTDWLDGKHVVFG V EG+DV+++IE+ GSK GK +K
Sbjct: 156 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKK 198
>ref|XP_002686758.1| PREDICTED: TRIM5/CypA fusion protein-like [Bos taurus].
Length = 164
Score = 229 bits (584), Expect = 3e-60
Identities = 106/161 (65%), Positives = 127/161 (78%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ +I + +P GR+ L +D VP TAEN L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFNIAVDGEPLGRVSFELFADKVPKTAENVHALRTGEKGFGYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGD T HNGTGGKSIYG+KFDDENFILKHTGPG+LS AN+GPNTNGSQFF KT+WL
Sbjct: 63 QGGDSTCHNGTGGKSIYGEKFDDENFILKHTGPGILSTANAGPNTNGSQFFTCTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVFG+V EG+DV+ +E GS++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMDVVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|XP_868977.1| PREDICTED: TRIM5/CypA fusion protein-like isoform 1 [Bos taurus].
Length = 164
Score = 229 bits (584), Expect = 3e-60
Identities = 106/161 (65%), Positives = 127/161 (78%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ +I + +P GR+ L +D VP TAEN L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFNIAVDGEPLGRVSFELFADKVPKTAENVHALRTGEKGFGYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGD T HNGTGGKSIYG+KFDDENFILKHTGPG+LS AN+GPNTNGSQFF KT+WL
Sbjct: 63 QGGDSTCHNGTGGKSIYGEKFDDENFILKHTGPGILSTANAGPNTNGSQFFTCTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVFG+V EG+DV+ +E GS++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMDVVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|NP_777017.1| E3 SUMO-protein ligase RanBP2 [Bos taurus].
Length = 3035
Score = 213 bits (541), Expect = 3e-55
Identities = 98/162 (60%), Positives = 126/162 (77%)
Frame = +1
Query: 415 SNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 594
+NP V+ DI ++P GRI + L S++VP TAENFR LCT EKGFGFK S FHR+IP F+
Sbjct: 2873 TNPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFGFKSSIFHRVIPDFV 2932
Query: 595 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 774
CQGGD T H+GTGG+SIYG KF+DENF +KHTGPGLLSMAN G +TN SQFF+T K +
Sbjct: 2933 CQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAER 2992
Query: 775 LDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
LD KHVVFG V +G+D +++IE+ GS G +++II++CG+
Sbjct: 2993 LDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQ 3034
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,585,608
Number of extensions: 1210136
Number of successful extensions: 4758
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 4725
Number of HSP's successfully gapped: 59
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013212
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013212
(1045 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848739.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 566 e-161
Alignment gi|XP_856959.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 533 e-151
Alignment gi|XP_853114.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 233 2e-61
Alignment gi|XP_533873.1| PREDICTED: similar to peptidylprolyl isomerase ... 227 2e-59
Alignment gi|XP_848420.1| PREDICTED: similar to peptidylprolyl isomerase ... 226 2e-59
Alignment gi|XP_532723.2| PREDICTED: similar to peptidylprolyl isomerase ... 223 2e-58
Alignment gi|XP_852435.1| PREDICTED: similar to peptidylprolyl isomerase ... 210 2e-54
Alignment gi|XP_852389.1| PREDICTED: similar to peptidylprolyl isomerase ... 193 2e-49
Alignment gi|XP_855689.1| PREDICTED: similar to peptidyl prolyl isomerase... 193 3e-49
Alignment gi|XP_848237.1| PREDICTED: similar to peptidyl prolyl isomerase... 193 3e-49
>ref|XP_848739.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase E (PPIase
E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) isoform
2 [Canis familiaris].
Length = 301
Score = 566 bits (1459), Expect = e-161
Identities = 275/289 (95%), Positives = 277/289 (95%)
Frame = +1
Query: 37 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 216
GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 71
Query: 217 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXXPPKVETQEGEP 396
LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL PPKVETQEGEP
Sbjct: 72 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKVETQEGEP 131
Query: 397 TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 576
AKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR
Sbjct: 132 AAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 191
Query: 577 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 756
IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT
Sbjct: 192 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 251
Query: 757 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK KQKVII+DCGEY
Sbjct: 252 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 300
>ref|XP_856959.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase E (PPIase
E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) isoform
3 [Canis familiaris].
Length = 288
Score = 533 bits (1372), Expect = e-151
Identities = 263/289 (91%), Positives = 265/289 (91%)
Frame = +1
Query: 37 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 216
GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 71
Query: 217 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXXPPKVETQEGEP 396
LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL PPKVETQE
Sbjct: 72 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKVETQE--- 128
Query: 397 TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 576
VYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR
Sbjct: 129 ----------VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 178
Query: 577 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 756
IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT
Sbjct: 179 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 238
Query: 757 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK KQKVII+DCGEY
Sbjct: 239 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 287
>ref|XP_853114.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase,
mitochondrial precursor (PPIase) (Rotamase) (Cyclophilin
F) [Canis familiaris].
Length = 152
Score = 233 bits (595), Expect = 2e-61
Identities = 104/140 (74%), Positives = 122/140 (87%)
Frame = +1
Query: 481 LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 660
L++DVVP TAENFR LCT EKGFG+KGSSFHR+IP FMCQ GDFTNHNGTGGKSIYG +F
Sbjct: 11 LKADVVPKTAENFRALCTGEKGFGYKGSSFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 70
Query: 661 DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 840
DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWLDGKHVVFG V EG+DV+++IE
Sbjct: 71 PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTVKTDWLDGKHVVFGHVKEGMDVVKKIE 130
Query: 841 AQGSKDGKAKQKVIISDCGE 900
+ GS+ GK +K+II+DCG+
Sbjct: 131 SFGSRSGKTSKKIIITDCGQ 150
>ref|XP_533873.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 161
Score = 227 bits (578), Expect = 2e-59
Identities = 103/155 (66%), Positives = 126/155 (81%)
Frame = +1
Query: 436 DIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFT 615
DI + +P G + L +D VP TAENF L T EKGFG+KGS FHRIIP FMCQGGDFT
Sbjct: 6 DITVDCEPLGPVSFELFADRVPKTAENFCALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT 65
Query: 616 NHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVV 795
HNGTGGKSIYG+KFDD+NFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WLDGKHVV
Sbjct: 66 RHNGTGGKSIYGEKFDDKNFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVV 125
Query: 796 FGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
FG+V EG++++ +EA G ++GK +K+ I+DCG+
Sbjct: 126 FGKVKEGMNIVEAMEASGPRNGKTSKKITIADCGQ 160
>ref|XP_848420.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 164
Score = 226 bits (577), Expect = 2e-59
Identities = 102/161 (63%), Positives = 128/161 (79%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP ++ DI + +P GR+ L +D VP TAEN R L EKGF ++GS FHRIIP FMC
Sbjct: 3 NPTMFFDIAMDGEPLGRVSFELFADKVPKTAENSRALSMGEKGFSYEGSGFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTGGKSIYG+KFDD+NFILKHTGPG+LSMAN+GPNTN SQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDKNFILKHTGPGILSMANAGPNTNRSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVFG+V EG++++ +E GS++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|XP_532723.2| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 239
Score = 223 bits (569), Expect = 2e-58
Identities = 101/140 (72%), Positives = 120/140 (85%)
Frame = +1
Query: 481 LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 660
L +D VP TAENFR L T EKGFG+KGS FHRIIP FMCQGGDFT HNGTGGKSIYG+KF
Sbjct: 99 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 158
Query: 661 DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 840
DDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WLDGKHVVFG+V EG++++ +E
Sbjct: 159 DDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 218
Query: 841 AQGSKDGKAKQKVIISDCGE 900
GS++GK +K+ I+DCG+
Sbjct: 219 RFGSRNGKTSKKITIADCGQ 238
>ref|XP_852435.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 172
Score = 210 bits (535), Expect = 2e-54
Identities = 100/151 (66%), Positives = 119/151 (78%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI + +P GR L +D VP +AENFR L T EKGFG+KGS FH IIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRGSFELFADKVPKSAENFRALSTGEKGFGYKGSRFHGIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTG KSI+G+K DDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGRKSIHGEKSDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAK 870
DGKHVVFG+V EG++++ +EA G GKA+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMEASG--PGKAR 151
>ref|XP_852389.1| PREDICTED: similar to peptidylprolyl isomerase B precursor isoform
2 [Canis familiaris].
Length = 216
Score = 193 bits (491), Expect = 2e-49
Identities = 98/177 (55%), Positives = 127/177 (71%), Gaps = 6/177 (3%)
Frame = +1
Query: 388 GEPTAKKARSNPQV----YMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGF 555
G TA + + P+V Y D++IG++ GR+ I L VP T +NF L T EKGFG+
Sbjct: 29 GPSTADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGY 88
Query: 556 KGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTN 735
K S FHR+I FM QGGDFT +GTGGKSIYG++F DENF LKH GPG +SMAN+G +TN
Sbjct: 89 KDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTN 148
Query: 736 GSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEA--QGSKDGKAKQKVIISDCGE 900
GSQFF+T KT WLDGKHVVFG+V EG++V+R++E+ S+D K + V I+DCG+
Sbjct: 149 GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRD-KPLKDVTIADCGK 204
>ref|XP_855689.1| PREDICTED: similar to peptidyl prolyl isomerase H isoform 3 [Canis
familiaris].
Length = 177
Score = 193 bits (490), Expect = 3e-49
Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 6/173 (3%)
Frame = +1
Query: 400 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 564
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 565 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 744
+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 745 FFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKAKQKVIISDCGE 900
FF+TC K DWLDGKHVVFG++ +GL V+R+IE + K K V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
>ref|XP_848237.1| PREDICTED: similar to peptidyl prolyl isomerase H isoform 1 [Canis
familiaris].
Length = 177
Score = 193 bits (490), Expect = 3e-49
Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 6/173 (3%)
Frame = +1
Query: 400 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 564
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 565 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 744
+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 745 FFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKAKQKVIISDCGE 900
FF+TC K DWLDGKHVVFG++ +GL V+R+IE + K K V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,338,633
Number of extensions: 1239360
Number of successful extensions: 5474
Number of sequences better than 1.0e-05: 132
Number of HSP's gapped: 5400
Number of HSP's successfully gapped: 133
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013212
(1045 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127865.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 568 e-162
Alignment gi|XP_003359306.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 251 4e-67
Alignment gi|XP_001929518.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 251 4e-67
Alignment gi|NP_999518.1| peptidyl-prolyl cis-trans isomerase A [Sus scro... 242 3e-64
Alignment gi|XP_003362121.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 237 7e-63
Alignment gi|XP_003127873.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 233 2e-61
Alignment gi|XP_003124897.2| PREDICTED: e3 SUMO-protein ligase RanBP2 [Su... 209 3e-54
Alignment gi|XP_003129052.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 194 7e-50
Alignment gi|XP_003128148.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 191 8e-49
Alignment gi|XP_003356541.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 191 8e-49
>ref|XP_003127865.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1
[Sus scrofa].
Length = 301
Score = 568 bits (1463), Expect = e-162
Identities = 277/289 (95%), Positives = 277/289 (95%)
Frame = +1
Query: 37 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 216
GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 71
Query: 217 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXXPPKVETQEGEP 396
LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL PPK ETQEGEP
Sbjct: 72 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKGETQEGEP 131
Query: 397 TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 576
TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR
Sbjct: 132 TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 191
Query: 577 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 756
IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT
Sbjct: 192 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 251
Query: 757 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK KQKVIISDCGEY
Sbjct: 252 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIISDCGEY 300
>ref|XP_003359306.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F,
mitochondrial-like [Sus scrofa].
Length = 207
Score = 251 bits (642), Expect = 4e-67
Identities = 113/171 (66%), Positives = 141/171 (82%)
Frame = +1
Query: 388 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 567
G+P++ + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 37 GDPSS--SARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 94
Query: 568 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 747
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 95 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQF 154
Query: 748 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
F+ KTDWLDGKHVVFG V EG+DV+++IE+ GSK GK +K++I+DCG+
Sbjct: 155 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 205
>ref|XP_001929518.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F, mitochondrial
[Sus scrofa].
Length = 207
Score = 251 bits (642), Expect = 4e-67
Identities = 113/171 (66%), Positives = 141/171 (82%)
Frame = +1
Query: 388 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 567
G+P++ + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 37 GDPSS--SARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 94
Query: 568 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 747
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 95 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQF 154
Query: 748 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
F+ KTDWLDGKHVVFG V EG+DV+++IE+ GSK GK +K++I+DCG+
Sbjct: 155 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 205
>ref|NP_999518.1| peptidyl-prolyl cis-trans isomerase A [Sus scrofa].
Length = 164
Score = 242 bits (617), Expect = 3e-64
Identities = 109/161 (67%), Positives = 132/161 (81%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTGGKSIYG+KFDDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVFG+V EG++++ +E GS++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|XP_003362121.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F,
mitochondrial-like [Sus scrofa].
Length = 248
Score = 237 bits (605), Expect = 7e-63
Identities = 106/171 (61%), Positives = 138/171 (80%)
Frame = +1
Query: 388 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 567
G+P++ + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 78 GDPSS--SARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 135
Query: 568 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 747
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DE+ +++ G+LSMAN+GPNTNGSQF
Sbjct: 136 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDESLVIQFAFAGVLSMANAGPNTNGSQF 195
Query: 748 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
F+ KTDWLDGKHVVFG V EG+DV+++IE+ GSK GK +K++I+DCG+
Sbjct: 196 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 246
>ref|XP_003127873.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Sus scrofa].
Length = 176
Score = 233 bits (593), Expect = 2e-61
Identities = 107/113 (94%), Positives = 109/113 (96%)
Frame = +1
Query: 511 ENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHT 690
ENFRCLCTHEKGFGFKG+SFH IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN ILKHT
Sbjct: 3 ENFRCLCTHEKGFGFKGTSFHCIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENCILKHT 62
Query: 691 GPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG 849
GPGLLSMANSGPNTNGSQFFLTCDKTDWL+GKHVVFGEVTEGLDVLRQIE G
Sbjct: 63 GPGLLSMANSGPNTNGSQFFLTCDKTDWLEGKHVVFGEVTEGLDVLRQIEVGG 115
>ref|XP_003124897.2| PREDICTED: e3 SUMO-protein ligase RanBP2 [Sus scrofa].
Length = 659
Score = 209 bits (531), Expect = 3e-54
Identities = 96/162 (59%), Positives = 124/162 (76%)
Frame = +1
Query: 415 SNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 594
+NP V+ D+ ++P GRI + L S+VVP TAENFR LCT EKGFG+K S FHR+IP F+
Sbjct: 496 TNPVVFFDVCADDQPLGRITMELFSNVVPQTAENFRALCTGEKGFGYKHSIFHRVIPDFV 555
Query: 595 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 774
CQGGD T H+G+GG+SIYG KF+DENF +KHTGPGLLSMAN G NTN SQFF+T K +
Sbjct: 556 CQGGDITKHDGSGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQNTNNSQFFITLKKAEH 615
Query: 775 LDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
LD KHVVFG V +G+D +++IE+ GS G +++ I +CG+
Sbjct: 616 LDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRITIVECGQ 657
>ref|XP_003129052.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Sus scrofa].
Length = 370
Score = 194 bits (493), Expect = 7e-50
Identities = 101/178 (56%), Positives = 124/178 (69%), Gaps = 9/178 (5%)
Frame = +1
Query: 394 PTAKKAR-SNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFG------ 552
P AK + SNP+V+ D+ IG + GRI + L +D+VP TAENFR LCT EKG G
Sbjct: 6 PQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKP 65
Query: 553 --FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 726
FKG FHRII +FM QGGDF+N NGTGG+SIYG+KF+DENF KH GLLSMAN+G
Sbjct: 66 LHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGC 125
Query: 727 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
NTNGSQFF+T T LDGKHVVFG+V +G+ V R +E K K + +I++CGE
Sbjct: 126 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLCVIAECGE 183
>ref|XP_003128148.1| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like isoform 3
[Sus scrofa].
Length = 177
Score = 191 bits (484), Expect = 8e-49
Identities = 97/173 (56%), Positives = 119/173 (68%), Gaps = 6/173 (3%)
Frame = +1
Query: 400 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 564
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 565 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 744
+FHR+I FM QGGDF N +GTG SIY F D NF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADXNFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 745 FFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKAKQKVIISDCGE 900
FF+TC K DWLDGKHVVFG++ +GL V+R+IE + K K V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
>ref|XP_003356541.1| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like [Sus scrofa].
Length = 177
Score = 191 bits (484), Expect = 8e-49
Identities = 97/173 (56%), Positives = 119/173 (68%), Gaps = 6/173 (3%)
Frame = +1
Query: 400 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 564
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 565 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 744
+FHR+I FM QGGDF N +GTG SIY F D NF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADXNFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 745 FFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKAKQKVIISDCGE 900
FF+TC K DWLDGKHVVFG++ +GL V+R+IE + K K V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,814,124
Number of extensions: 778001
Number of successful extensions: 2975
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 2949
Number of HSP's successfully gapped: 48
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013212
(1045 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062362.1| peptidyl-prolyl cis-trans isomerase E [Mus musc... 563 e-161
Alignment gi|NP_598845.1| peptidyl-prolyl cis-trans isomerase F, mitochon... 251 5e-67
Alignment gi|NP_032933.1| peptidyl-prolyl cis-trans isomerase A [Mus musc... 241 7e-64
Alignment gi|XP_001002180.2| PREDICTED: peptidyl-prolyl cis-trans isomera... 233 2e-61
Alignment gi|XP_003086687.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 233 2e-61
Alignment gi|NP_035370.2| E3 SUMO-protein ligase RanBP2 [Mus musculus]. 214 9e-56
Alignment gi|NP_080628.1| peptidyl-prolyl cis-trans isomerase D [Mus musc... 197 1e-50
Alignment gi|XP_003085169.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 193 2e-49
Alignment gi|XP_001477014.2| PREDICTED: peptidyl-prolyl cis-trans isomera... 193 2e-49
Alignment gi|NP_001103599.1| peptidyl-prolyl cis-trans isomerase H isofor... 193 2e-49
>ref|NP_062362.1| peptidyl-prolyl cis-trans isomerase E [Mus musculus].
Length = 301
Score = 563 bits (1452), Expect = e-161
Identities = 273/289 (94%), Positives = 276/289 (95%)
Frame = +1
Query: 37 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 216
GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 71
Query: 217 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXXPPKVETQEGEP 396
LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL PPK E QEGEP
Sbjct: 72 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGPEPPKAEAQEGEP 131
Query: 397 TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 576
TAKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR
Sbjct: 132 TAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 191
Query: 577 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 756
IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT
Sbjct: 192 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 251
Query: 757 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK KQKV+I+DCGEY
Sbjct: 252 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGEY 300
>ref|NP_598845.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor [Mus
musculus].
Length = 206
Score = 251 bits (642), Expect = 5e-67
Identities = 112/171 (65%), Positives = 138/171 (80%)
Frame = +1
Query: 388 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 567
G A + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 34 GARGANSSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 93
Query: 568 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 747
FHR+IP FMCQ GDFTNHNGTGG+SIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 94 FHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 153
Query: 748 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
F+ KTDWLDGKHVVFG V EG+DV+++IE+ GSK GK +K++I+DCG+
Sbjct: 154 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 204
>ref|NP_032933.1| peptidyl-prolyl cis-trans isomerase A [Mus musculus].
Length = 164
Score = 241 bits (615), Expect = 7e-64
Identities = 109/161 (67%), Positives = 133/161 (82%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI ++P GR+ L +D VP TAENFR L T EKGFG+KGSSFHRIIP FMC
Sbjct: 3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTGG+SIYG+KF+DENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVFG+V EG++++ +E GS++GK +K+ ISDCG+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQ 163
>ref|XP_001002180.2| PREDICTED: peptidyl-prolyl cis-trans isomerase A-like [Mus
musculus].
Length = 164
Score = 233 bits (593), Expect = 2e-61
Identities = 106/161 (65%), Positives = 130/161 (80%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI ++P GR+ L +D VP TAENF+ L T EKGFG+KGSSFHRIIP FMC
Sbjct: 3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFQALSTGEKGFGYKGSSFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTGG+SIYG+KF+DENFILKHTGPG+LSMAN+GPNTN SQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNSSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVF +V EG++ + +E GS++GK +K+ ISDCG+
Sbjct: 123 DGKHVVFEKVKEGMNTVEAMEHFGSRNGKTSKKITISDCGQ 163
>ref|XP_003086687.1| PREDICTED: peptidyl-prolyl cis-trans isomerase A-like [Mus
musculus].
Length = 164
Score = 233 bits (593), Expect = 2e-61
Identities = 106/161 (65%), Positives = 130/161 (80%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI ++P GR+ L +D VP TAENF+ L T EKGFG+KGSSFHRIIP FMC
Sbjct: 3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFQALSTGEKGFGYKGSSFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTGG+SIYG+KF+DENFILKHTGPG+LSMAN+GPNTN SQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNSSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVF +V EG++ + +E GS++GK +K+ ISDCG+
Sbjct: 123 DGKHVVFEKVKEGMNTVEAMEHFGSRNGKTSKKITISDCGQ 163
>ref|NP_035370.2| E3 SUMO-protein ligase RanBP2 [Mus musculus].
Length = 3053
Score = 214 bits (545), Expect = 9e-56
Identities = 99/162 (61%), Positives = 124/162 (76%)
Frame = +1
Query: 415 SNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 594
+NP V+ D+ +P GRI + L S++VP TAENFR LCT EKGFGFK S FHR++P F+
Sbjct: 2891 TNPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFGFKNSIFHRVVPDFI 2950
Query: 595 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 774
CQGGD T +NGTGG+SIYG KFDDENF LKHTGPGLLSMAN G NTN SQFF+T K +
Sbjct: 2951 CQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEH 3010
Query: 775 LDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
LD KHVVFG V +G+D +R+IE+ GS G +++ I++CG+
Sbjct: 3011 LDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQ 3052
>ref|NP_080628.1| peptidyl-prolyl cis-trans isomerase D [Mus musculus].
Length = 370
Score = 197 bits (501), Expect = 1e-50
Identities = 102/178 (57%), Positives = 124/178 (69%), Gaps = 9/178 (5%)
Frame = +1
Query: 394 PTAKKARS-NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFG------ 552
P AK + S NP+V+ D+ IG + GRI + L +D+VP TAENFR LCT EKG G
Sbjct: 6 PAAKPSNSKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKP 65
Query: 553 --FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 726
FKG FHRII +FM QGGDF+N NGTGG+SIYG+KF+DENF KH GLLSMAN+GP
Sbjct: 66 LHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGP 125
Query: 727 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
NTNGSQFF+T T LDGKHVVFG+V +GL V R +E K + +I++CGE
Sbjct: 126 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGE 183
>ref|XP_003085169.1| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like [Mus
musculus].
Length = 199
Score = 193 bits (491), Expect = 2e-49
Identities = 99/176 (56%), Positives = 121/176 (68%), Gaps = 6/176 (3%)
Frame = +1
Query: 391 EPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGF 555
E A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+
Sbjct: 23 ESRANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGY 82
Query: 556 KGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTN 735
KGS+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TN
Sbjct: 83 KGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSPPGLLSMANSGPSTN 142
Query: 736 GSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKAKQKVIISDCGE 900
G QFF+TC K DWLDGKHVVFG++ +GL V+R+IE + K K V+IS CGE
Sbjct: 143 GCQFFITCSKRDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 198
>ref|XP_001477014.2| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like [Mus
musculus].
Length = 199
Score = 193 bits (491), Expect = 2e-49
Identities = 99/176 (56%), Positives = 121/176 (68%), Gaps = 6/176 (3%)
Frame = +1
Query: 391 EPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGF 555
E A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+
Sbjct: 23 ESRANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGY 82
Query: 556 KGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTN 735
KGS+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TN
Sbjct: 83 KGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSPPGLLSMANSGPSTN 142
Query: 736 GSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKAKQKVIISDCGE 900
G QFF+TC K DWLDGKHVVFG++ +GL V+R+IE + K K V+IS CGE
Sbjct: 143 GCQFFITCSKRDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 198
>ref|NP_001103599.1| peptidyl-prolyl cis-trans isomerase H isoform 1 [Mus musculus].
Length = 177
Score = 193 bits (490), Expect = 2e-49
Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 6/173 (3%)
Frame = +1
Query: 400 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 564
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 565 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 744
+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 745 FFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKAKQKVIISDCGE 900
FF+TC K DWLDGKHVVFG++ +GL V+R+IE + K K V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,972,631
Number of extensions: 1015732
Number of successful extensions: 3962
Number of sequences better than 1.0e-05: 61
Number of HSP's gapped: 3936
Number of HSP's successfully gapped: 61
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013212
(1045 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006103.1| peptidyl-prolyl cis-trans isomerase E isoform 1... 564 e-161
Alignment gi|NP_001181936.1| peptidyl-prolyl cis-trans isomerase E isofor... 527 e-150
Alignment gi|NP_982281.1| peptidyl-prolyl cis-trans isomerase E isoform 2... 527 e-150
Alignment gi|NP_005720.1| peptidyl-prolyl cis-trans isomerase F, mitochon... 259 4e-69
Alignment gi|NP_066953.1| peptidyl-prolyl cis-trans isomerase A [Homo sap... 240 1e-63
Alignment gi|NP_001129261.1| peptidylprolyl cis-trans isomerase A-like 4A... 216 3e-56
Alignment gi|NP_001137355.1| peptidylprolyl cis-trans isomerase A-like 4A... 216 3e-56
Alignment gi|NP_839944.1| peptidylprolyl cis-trans isomerase A-like 4B [H... 216 3e-56
Alignment gi|NP_001116540.1| peptidylprolyl cis-trans isomerase A-like 4G... 213 2e-55
Alignment gi|XP_001129774.2| PREDICTED: peptidyl-prolyl cis-trans isomera... 213 2e-55
>ref|NP_006103.1| peptidyl-prolyl cis-trans isomerase E isoform 1 [Homo sapiens].
Length = 301
Score = 564 bits (1454), Expect = e-161
Identities = 274/289 (94%), Positives = 276/289 (95%)
Frame = +1
Query: 37 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 216
GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 71
Query: 217 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXXPPKVETQEGEP 396
LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL PPK ETQEGEP
Sbjct: 72 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAETQEGEP 131
Query: 397 TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 576
AKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR
Sbjct: 132 IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 191
Query: 577 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 756
IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT
Sbjct: 192 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 251
Query: 757 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK KQKVII+DCGEY
Sbjct: 252 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 300
>ref|NP_001181936.1| peptidyl-prolyl cis-trans isomerase E isoform 4 [Homo sapiens].
Length = 314
Score = 527 bits (1358), Expect = e-150
Identities = 259/279 (92%), Positives = 262/279 (93%), Gaps = 1/279 (0%)
Frame = +1
Query: 37 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 216
GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 71
Query: 217 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXXPPKVETQEGEP 396
LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL PPK ETQEGEP
Sbjct: 72 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAETQEGEP 131
Query: 397 TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 576
AKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR
Sbjct: 132 IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 191
Query: 577 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 756
IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT
Sbjct: 192 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 251
Query: 757 CDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKAK 870
CDKTDWLDGKHVVFGEVTEGLDVLRQIE A +K KA+
Sbjct: 252 CDKTDWLDGKHVVFGEVTEGLDVLRQIEVAPDTKASKAR 290
>ref|NP_982281.1| peptidyl-prolyl cis-trans isomerase E isoform 2 [Homo sapiens].
Length = 296
Score = 527 bits (1357), Expect = e-150
Identities = 256/270 (94%), Positives = 257/270 (95%)
Frame = +1
Query: 37 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 216
GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE
Sbjct: 12 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE 71
Query: 217 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXXPPKVETQEGEP 396
LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL PPK ETQEGEP
Sbjct: 72 LFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAETQEGEP 131
Query: 397 TAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 576
AKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR
Sbjct: 132 IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 191
Query: 577 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 756
IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT
Sbjct: 192 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 251
Query: 757 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQ 846
CDKTDWLDGKHVVFGEVTEGLDVLRQIE Q
Sbjct: 252 CDKTDWLDGKHVVFGEVTEGLDVLRQIEKQ 281
>ref|NP_005720.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor
[Homo sapiens].
Length = 207
Score = 259 bits (661), Expect = 4e-69
Identities = 113/171 (66%), Positives = 141/171 (82%)
Frame = +1
Query: 388 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 567
G+P++ + NP VY+D+ KP GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 35 GDPSSSSSSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 94
Query: 568 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 747
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 95 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 154
Query: 748 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
F+ KTDWLDGKHVVFG V EG+DV+++IE+ GSK G+ +K++I+DCG+
Sbjct: 155 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQ 205
>ref|NP_066953.1| peptidyl-prolyl cis-trans isomerase A [Homo sapiens].
Length = 165
Score = 240 bits (613), Expect = 1e-63
Identities = 108/161 (67%), Positives = 132/161 (81%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTGGKSIYG+KF+DENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
DGKHVVFG+V EG++++ +E GS++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|NP_001129261.1| peptidylprolyl cis-trans isomerase A-like 4A/B/C [Homo sapiens].
Length = 164
Score = 216 bits (550), Expect = 3e-56
Identities = 100/162 (61%), Positives = 123/162 (75%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
N V+ DI + KP GRI I L +D + TAENFR L T EKGF +KGS FHRIIP FMC
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTG KSIYG+KFDDEN I KHTG G+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
DGKHV FG+V E ++++ +E G ++ K +K+ I+DCG++
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF 164
>ref|NP_001137355.1| peptidylprolyl cis-trans isomerase A-like 4A/B/C [Homo sapiens].
Length = 164
Score = 216 bits (550), Expect = 3e-56
Identities = 100/162 (61%), Positives = 123/162 (75%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
N V+ DI + KP GRI I L +D + TAENFR L T EKGF +KGS FHRIIP FMC
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTG KSIYG+KFDDEN I KHTG G+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
DGKHV FG+V E ++++ +E G ++ K +K+ I+DCG++
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF 164
>ref|NP_839944.1| peptidylprolyl cis-trans isomerase A-like 4B [Homo sapiens].
Length = 164
Score = 216 bits (550), Expect = 3e-56
Identities = 100/162 (61%), Positives = 123/162 (75%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
N V+ DI + KP GRI I L +D + TAENFR L T EKGF +KGS FHRIIP FMC
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT HNGTG KSIYG+KFDDEN I KHTG G+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
DGKHV FG+V E ++++ +E G ++ K +K+ I+DCG++
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF 164
>ref|NP_001116540.1| peptidylprolyl cis-trans isomerase A-like 4G [Homo sapiens].
Length = 164
Score = 213 bits (543), Expect = 2e-55
Identities = 98/162 (60%), Positives = 123/162 (75%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
N ++ DI + KP GRI I +D +P TAENFR L T EKGF +KGS FHRIIP FMC
Sbjct: 3 NSVIFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT+ NGTG KSIYG+KFDDEN I KHTG G+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGEY 903
DGKHV FG+V E ++++ +E G ++ K +K+ I+DCG++
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF 164
>ref|XP_001129774.2| PREDICTED: peptidyl-prolyl cis-trans isomerase A-like [Homo
sapiens].
Length = 272
Score = 213 bits (542), Expect = 2e-55
Identities = 96/161 (59%), Positives = 123/161 (76%)
Frame = +1
Query: 418 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 597
NP V+ DI + KP G + + +D + TA+NFR L T EKG +KGS FHRIIP FMC
Sbjct: 3 NPTVFFDISVSGKPLGHVSFRIFADKLSKTAQNFRALSTGEKGLDYKGSCFHRIIPGFMC 62
Query: 598 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 777
QGGDFT +NGTGGKS+YG+KFDDENFILK PG+LSMA +GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTYNNGTGGKSLYGEKFDDENFILKRIRPGILSMAKAGPNTNGSQFFICTAKTEWL 122
Query: 778 DGKHVVFGEVTEGLDVLRQIEAQGSKDGKAKQKVIISDCGE 900
GKHVVFG+V EG++++ +E GS++GK +K+ I+DCG+
Sbjct: 123 IGKHVVFGKVKEGMNIVEAMEPFGSRNGKTSKKITIADCGQ 163
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,569,526
Number of extensions: 1219826
Number of successful extensions: 4726
Number of sequences better than 1.0e-05: 82
Number of HSP's gapped: 4693
Number of HSP's successfully gapped: 82
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013212
(1045 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 369 2e-99
Sscrofa_Chr18 84 2e-13
Sscrofa_Chr01 78 1e-11
Sscrofa_Chr14 76 4e-11
gb|GL896312.2| Sus scrofa unplaced genomic scaffold ChrUScaf4196 60 3e-06
>Sscrofa_Chr06
|| Length = 157765593
Score = 369 bits (186), Expect = 2e-99
Identities = 189/190 (99%)
Strand = Plus / Plus
Query: 509 cagagaacttccgctgcctgtgcacccacgagaagggctttggcttcaagggcagcagct 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88650275 cagagaacttccgctgcctgtgcacccacgagaagggctttggcttcaagggcagcagct 88650334
Query: 569 tccaccgcatcatcccccagttcatgtgccagggcggcgatttcaccaaccacaacggca 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88650335 tccaccgcatcatcccccagttcatgtgccagggcggcgatttcaccaaccacaacggca 88650394
Query: 629 ctgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaagcaca 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88650395 ctgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaagcaca 88650454
Query: 689 cgggaccagg 698
| ||||||||
Sbjct: 88650455 caggaccagg 88650464
Score = 337 bits (170), Expect = 7e-90
Identities = 185/190 (97%)
Strand = Plus / Minus
Query: 509 cagagaacttccgctgcctgtgcacccacgagaagggctttggcttcaagggcagcagct 568
|||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct: 88461371 cagagaacttccgctgcctgtgcacccatgagaagggctttggcttcaagggtaccagct 88461312
Query: 569 tccaccgcatcatcccccagttcatgtgccagggcggcgatttcaccaaccacaacggca 628
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88461311 tccactgcatcatcccccagttcatgtgccagggcggcgatttcaccaaccacaacggca 88461252
Query: 629 ctgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaagcaca 688
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 88461251 ctgggggcaagtccatctatgggaagaagtttgatgatgaaaactgtatcctcaagcaca 88461192
Query: 689 cgggaccagg 698
||||||||||
Sbjct: 88461191 cgggaccagg 88461182
Score = 315 bits (159), Expect = 3e-83
Identities = 200/212 (94%), Gaps = 5/212 (2%)
Strand = Plus / Plus
Query: 839 aggcccagggcagcaaggacgggaaagccaagcagaaggtgatcatctctgactgtgggg 898
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 88651740 aggcccagggcagcaaggacgggaagcccaagcagaaggtgatcatctctgactgtgggg 88651799
Query: 899 agtacgcgtgaggcgccagagggctcctgttggc----ggcagcagggccttgtgtcctg 954
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 88651800 agtacgcgtgaggcgccagagggctcctgttggcggcaggcagcagggccttgtgtcctg 88651859
Query: 955 gtcagcatggggcagctcctctgcgggca-agcctggccctctctggctctgccccaggt 1013
|||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct: 88651860 gtcagcatggggcagctcctctgcaggcacagcctggcctcctctggctctgccccaggt 88651919
Query: 1014 gtggccgagggcccgagtgccacccttccctc 1045
||||| ||||||| ||||||||||||||||||
Sbjct: 88651920 gtggctgagggcctgagtgccacccttccctc 88651951
Score = 285 bits (144), Expect = 2e-74
Identities = 147/148 (99%)
Strand = Plus / Plus
Query: 694 ccaggcctgctctccatggccaattctggcccaaacaccaatggctcccagttcttcctg 753
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 88651439 ccaggcctgctctccatggctaattctggcccaaacaccaatggctcccagttcttcctg 88651498
Query: 754 acgtgtgacaagacagattggctggacggcaagcacgtcgtgttcggggaggtcacagaa 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88651499 acgtgtgacaagacagattggctggacggcaagcacgtcgtgttcggggaggtcacagaa 88651558
Query: 814 ggcctggacgtcttgcggcagattgagg 841
||||||||||||||||||||||||||||
Sbjct: 88651559 ggcctggacgtcttgcggcagattgagg 88651586
Score = 254 bits (128), Expect = 8e-65
Identities = 143/148 (96%)
Strand = Plus / Minus
Query: 694 ccaggcctgctctccatggccaattctggcccaaacaccaatggctcccagttcttcctg 753
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 88453976 ccaggcctgctctccatggccaactccggcccaaacaccaacggctcccagttcttcctg 88453917
Query: 754 acgtgtgacaagacagattggctggacggcaagcacgtcgtgttcggggaggtcacagaa 813
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 88453916 acgtgtgacaagacagattggctggagggcaagcacgtcgtgttcggggaggtcacggaa 88453857
Query: 814 ggcctggacgtcttgcggcagattgagg 841
||||||||||||||||||||||||||||
Sbjct: 88453856 ggcctggacgtcttgcggcagattgagg 88453829
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 386 agggggagcccactgccaaaaaggcccggtcaaacccccaagtgtacatggacatcaaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88645110 agggggagcccactgccaaaaaggcccggtcaaacccccaagtgtacatggacatcaaga 88645169
Query: 446 ttgggaacaaaccagccggccgcatccagatactcttgcgttcagacgtcgttcccatga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88645170 ttgggaacaaaccagccggccgcatccagatactcttgcgttcagacgtcgttcccatga 88645229
Query: 506 cagcag 511
||||||
Sbjct: 88645230 cagcag 88645235
Score = 200 bits (101), Expect = 1e-48
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 284 cagtttggtccgatgatgactggttgaagaagttttctggaaagactcttgaagagaata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88642581 cagtttggtccgatgatgactggttgaagaagttttctggaaagactcttgaagagaata 88642640
Query: 344 aagaagaagaaggctcagagcctcccaaagtagaaacccaggagg 388
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 88642641 aagaagaagaaggctcagagcctcccaaaggagaaacccaggagg 88642685
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 35 gtggacttgcagaggaggtggatgataaagttcttcatgctgcttttatcccttttggag 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88638325 gtggacttgcagaggaggtggatgataaagttcttcatgctgcttttatcccttttggag 88638384
Query: 95 acatcacagatatccagattcctctggattatgaaacag 133
|||||||||||||||||||||||||||||||||||||||
Sbjct: 88638385 acatcacagatatccagattcctctggattatgaaacag 88638423
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 204 gaatgaatctgagctctttggacggacaattcgtgtcaatttggcaaaaccaatgaggat 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88641986 gaatgaatctgagctctttggacggacaattcgtgtcaatttggcaaaaccaatgaggat 88642045
Query: 264 taaggaaggctcttccagaccag 286
|||||||||||||||||||||||
Sbjct: 88642046 taaggaaggctcttccagaccag 88642068
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 131 cagaaaagcaccgaggatttgcttttgttgagtttgagttggccgagg 178
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88639502 cagaaaagcaccgaggatttgcttttgttgagtttgagttggccgagg 88639549
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 gtgcgagcaagatggccactaccaagcgagtgttgt 36
||||||||||||||||||||||||||||||||||||
Sbjct: 88636985 gtgcgagcaagatggccactaccaagcgagtgttgt 88637020
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 132 agaaaagcaccgaggatttgcttttgttgagtttgagttggc 173
|||||||||| ||||||||||||||||||| | |||||||||
Sbjct: 88465313 agaaaagcactgaggatttgcttttgttgaatctgagttggc 88465272
>Sscrofa_Chr18
|| Length = 61220071
Score = 83.8 bits (42), Expect = 2e-13
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 625 ggcactgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaag 684
|||||||| ||||||||||||||||| |||| ||||||||||| || |||||||| |||
Sbjct: 55289411 ggcactggtggcaagtccatctatggagagaaatttgatgatgagaattttatcctgaag 55289470
Query: 685 cacacgggaccaggcctgctctccatggccaattctggcccaaacaccaatggctcccag 744
|| ||||| || ||| | | |||||||| ||| ||||||| ||||| || || ||||||
Sbjct: 55289471 catacgggtcctggcatcttgtccatggcaaatgctggccccaacacaaacggttcccag 55289530
Query: 745 tt 746
||
Sbjct: 55289531 tt 55289532
>Sscrofa_Chr01
|| Length = 315321322
Score = 77.8 bits (39), Expect = 1e-11
Identities = 126/155 (81%)
Strand = Plus / Plus
Query: 592 atgtgccagggcggcgatttcaccaaccacaacggcactgggggcaagtccatctatggg 651
||||||||||| || || ||||| ||| || |||||||| |||||||||||||||||
Sbjct: 227347269 atgtgccagggtggtgacttcacacgccataatggcactggtggcaagtccatctatgga 227347328
Query: 652 aagaagtttgatgatgaaaactttatcctcaagcacacgggaccaggcctgctctccatg 711
|||| ||||||||||| || |||||||| ||||| | ||| || ||| | | ||||||
Sbjct: 227347329 gagaaatttgatgatgagaattttatcctgaagcataagggtcctggcatcttgtccatg 227347388
Query: 712 gccaattctggcccaaacaccaatggctcccagtt 746
|| ||| ||||||| ||||| || || ||||||||
Sbjct: 227347389 gcaaatgctggccccaacacaaacggttcccagtt 227347423
>Sscrofa_Chr14
|| Length = 153851969
Score = 75.8 bits (38), Expect = 4e-11
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 625 ggcactgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaag 684
|||||||| ||||||||||||||||| |||| ||||||||||| || || | ||| |||
Sbjct: 110664985 ggcactggtggcaagtccatctatggagagaaatttgatgatgagaatttcaccctgaag 110664926
Query: 685 cacacgggaccaggcctgctctccatggccaattctggcccaaacaccaatggctcccag 744
|| ||||| || ||| | | |||||||| ||| ||||||| ||||| ||||| ||||||
Sbjct: 110664925 catacgggtcctggcatcttgtccatggcaaatgctggccccaacacaaatggttcccag 110664866
Query: 745 tt 746
||
Sbjct: 110664865 tt 110664864
Score = 60.0 bits (30), Expect = 3e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 598 cagggcggcgatttcaccaaccacaacggcactgggggcaagtccatcta 647
|||| |||||| |||||||||||||||||||| || || |||||||||||
Sbjct: 88338059 caggccggcgacttcaccaaccacaacggcacaggagggaagtccatcta 88338108
>gb|GL896312.2| Sus scrofa unplaced genomic scaffold ChrUScaf4196
Length = 122358
Score = 60.0 bits (30), Expect = 3e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 598 cagggcggcgatttcaccaaccacaacggcactgggggcaagtccatcta 647
|||| |||||| |||||||||||||||||||| || || |||||||||||
Sbjct: 103254 caggccggcgacttcaccaaccacaacggcacaggagggaagtccatcta 103303
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,972,304
Number of extensions: 215
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 17
Length of query: 1045
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1024
Effective length of database: 2,808,413,156
Effective search space: 2875815071744
Effective search space used: 2875815071744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)