Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013213
(1176 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848739.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 584 e-167
Alignment gi|XP_856959.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 551 e-157
Alignment gi|XP_853114.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 228 7e-60
Alignment gi|XP_533873.1| PREDICTED: similar to peptidylprolyl isomerase ... 223 2e-58
Alignment gi|XP_848420.1| PREDICTED: similar to peptidylprolyl isomerase ... 221 8e-58
Alignment gi|XP_532723.2| PREDICTED: similar to peptidylprolyl isomerase ... 218 7e-57
Alignment gi|XP_852435.1| PREDICTED: similar to peptidylprolyl isomerase ... 209 4e-54
Alignment gi|XP_852389.1| PREDICTED: similar to peptidylprolyl isomerase ... 193 2e-49
Alignment gi|XP_855689.1| PREDICTED: similar to peptidyl prolyl isomerase... 193 3e-49
Alignment gi|XP_848237.1| PREDICTED: similar to peptidyl prolyl isomerase... 193 3e-49
>ref|XP_848739.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase E (PPIase
E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) isoform
2 [Canis familiaris].
Length = 301
Score = 584 bits (1506), Expect = e-167
Identities = 284/300 (94%), Positives = 287/300 (95%)
Frame = +3
Query: 15 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 194
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 195 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXX 374
AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSE 120
Query: 375 PPKVETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK 554
PPKVETQEGEP AKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEK
Sbjct: 121 PPKVETQEGEPAAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK 180
Query: 555 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 734
GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG
Sbjct: 181 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 240
Query: 735 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
PNTNGSQFFLTCDKTDWLDGKHVVFGEVTE LDVLRQIEAQG +DGKPKQKVII+DCGEY
Sbjct: 241 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 300
>ref|XP_856959.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase E (PPIase
E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) isoform
3 [Canis familiaris].
Length = 288
Score = 551 bits (1419), Expect = e-157
Identities = 272/300 (90%), Positives = 275/300 (91%)
Frame = +3
Query: 15 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 194
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 195 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXX 374
AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSE 120
Query: 375 PPKVETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK 554
PPKVETQE VYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEK
Sbjct: 121 PPKVETQE-------------VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK 167
Query: 555 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 734
GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG
Sbjct: 168 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 227
Query: 735 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
PNTNGSQFFLTCDKTDWLDGKHVVFGEVTE LDVLRQIEAQG +DGKPKQKVII+DCGEY
Sbjct: 228 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 287
>ref|XP_853114.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase,
mitochondrial precursor (PPIase) (Rotamase) (Cyclophilin
F) [Canis familiaris].
Length = 152
Score = 228 bits (582), Expect = 7e-60
Identities = 102/140 (72%), Positives = 120/140 (85%)
Frame = +3
Query: 492 LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 671
L++DVVP TAENFR LCT EKGFG+KGSSFHR+IP FMCQ GDFTNHNGTGGKSIYG +F
Sbjct: 11 LKADVVPKTAENFRALCTGEKGFGYKGSSFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRF 70
Query: 672 DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE 851
DENF LKH GPG+LSMAN+GPNTNGSQFF+ KTDWLDGKHVVFG V E +DV+++IE
Sbjct: 71 PDENFTLKHVGPGVLSMANAGPNTNGSQFFICTVKTDWLDGKHVVFGHVKEGMDVVKKIE 130
Query: 852 AQGRQDGKPKQKVIISDCGE 911
+ G + GK +K+II+DCG+
Sbjct: 131 SFGSRSGKTSKKIIITDCGQ 150
>ref|XP_533873.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 161
Score = 223 bits (569), Expect = 2e-58
Identities = 102/155 (65%), Positives = 125/155 (80%)
Frame = +3
Query: 447 DIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFT 626
DI + +P G + L +D VP TAENF L T EKGFG+KGS FHRIIP FMCQGGDFT
Sbjct: 6 DITVDCEPLGPVSFELFADRVPKTAENFCALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT 65
Query: 627 NHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVV 806
HNGTGGKSIYG+KFDD+NFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WLDGKHVV
Sbjct: 66 RHNGTGGKSIYGEKFDDKNFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVV 125
Query: 807 FGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
FG+V E ++++ +EA G ++GK +K+ I+DCG+
Sbjct: 126 FGKVKEGMNIVEAMEASGPRNGKTSKKITIADCGQ 160
>ref|XP_848420.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 164
Score = 221 bits (564), Expect = 8e-58
Identities = 100/161 (62%), Positives = 126/161 (78%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP ++ DI + +P GR+ L +D VP TAEN R L EKGF ++GS FHRIIP FMC
Sbjct: 3 NPTMFFDIAMDGEPLGRVSFELFADKVPKTAENSRALSMGEKGFSYEGSGFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTGGKSIYG+KFDD+NFILKHTGPG+LSMAN+GPNTN SQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDKNFILKHTGPGILSMANAGPNTNRSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVFG+V E ++++ +E G ++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|XP_532723.2| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 239
Score = 218 bits (556), Expect = 7e-57
Identities = 99/140 (70%), Positives = 118/140 (84%)
Frame = +3
Query: 492 LRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKF 671
L +D VP TAENFR L T EKGFG+KGS FHRIIP FMCQGGDFT HNGTGGKSIYG+KF
Sbjct: 99 LFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKF 158
Query: 672 DDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE 851
DDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WLDGKHVVFG+V E ++++ +E
Sbjct: 159 DDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME 218
Query: 852 AQGRQDGKPKQKVIISDCGE 911
G ++GK +K+ I+DCG+
Sbjct: 219 RFGSRNGKTSKKITIADCGQ 238
>ref|XP_852435.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 172
Score = 209 bits (532), Expect = 4e-54
Identities = 97/153 (63%), Positives = 118/153 (77%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ DI + +P GR L +D VP +AENFR L T EKGFG+KGS FH IIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRGSFELFADKVPKSAENFRALSTGEKGFGYKGSRFHGIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTG KSI+G+K DDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGRKSIHGEKSDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQK 887
DGKHVVFG+V E ++++ +EA G +P ++
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMEASGPGKARPARR 155
>ref|XP_852389.1| PREDICTED: similar to peptidylprolyl isomerase B precursor isoform
2 [Canis familiaris].
Length = 216
Score = 193 bits (491), Expect = 2e-49
Identities = 96/176 (54%), Positives = 124/176 (70%), Gaps = 5/176 (2%)
Frame = +3
Query: 399 GEPTAKKARSNPQV----YMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGF 566
G TA + + P+V Y D++IG++ GR+ I L VP T +NF L T EKGFG+
Sbjct: 29 GPSTADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGY 88
Query: 567 KGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTN 746
K S FHR+I FM QGGDFT +GTGGKSIYG++F DENF LKH GPG +SMAN+G +TN
Sbjct: 89 KDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTN 148
Query: 747 GSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQD-GKPKQKVIISDCGE 911
GSQFF+T KT WLDGKHVVFG+V E ++V+R++E+ KP + V I+DCG+
Sbjct: 149 GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVTIADCGK 204
>ref|XP_855689.1| PREDICTED: similar to peptidyl prolyl isomerase H isoform 3 [Canis
familiaris].
Length = 177
Score = 193 bits (490), Expect = 3e-49
Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 6/173 (3%)
Frame = +3
Query: 411 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 575
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 576 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 755
+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 756 FFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE-AQGRQDGKPKQKVIISDCGE 911
FF+TC K DWLDGKHVVFG++ + L V+R+IE + KPK V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
>ref|XP_848237.1| PREDICTED: similar to peptidyl prolyl isomerase H isoform 1 [Canis
familiaris].
Length = 177
Score = 193 bits (490), Expect = 3e-49
Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 6/173 (3%)
Frame = +3
Query: 411 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 575
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 576 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 755
+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 756 FFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE-AQGRQDGKPKQKVIISDCGE 911
FF+TC K DWLDGKHVVFG++ + L V+R+IE + KPK V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,116,752
Number of extensions: 1373216
Number of successful extensions: 7413
Number of sequences better than 1.0e-05: 210
Number of HSP's gapped: 7273
Number of HSP's successfully gapped: 260
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013213
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013213
(1176 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091630.1| peptidyl-prolyl cis-trans isomerase E [Bos t... 582 e-166
Alignment gi|XP_002693235.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 243 2e-64
Alignment gi|XP_002701382.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 243 2e-64
Alignment gi|XP_002690562.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 234 1e-61
Alignment gi|XP_002690561.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 234 1e-61
Alignment gi|XP_001252498.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 234 1e-61
Alignment gi|NP_001001597.1| peptidyl-prolyl cis-trans isomerase F, mitoc... 232 5e-61
Alignment gi|XP_002686758.1| PREDICTED: TRIM5/CypA fusion protein-like [B... 224 1e-58
Alignment gi|XP_868977.1| PREDICTED: TRIM5/CypA fusion protein-like isofo... 224 1e-58
Alignment gi|NP_777017.1| E3 SUMO-protein ligase RanBP2 [Bos taurus]. 207 1e-53
>ref|NP_001091630.1| peptidyl-prolyl cis-trans isomerase E [Bos taurus].
Length = 301
Score = 582 bits (1501), Expect = e-166
Identities = 282/300 (94%), Positives = 286/300 (95%)
Frame = +3
Query: 15 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 194
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 195 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXX 374
AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSE 120
Query: 375 PPKVETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK 554
PPKVETQEGEP KKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEK
Sbjct: 121 PPKVETQEGEPAVKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK 180
Query: 555 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 734
GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG
Sbjct: 181 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 240
Query: 735 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
PNTNGSQFFLTCDKTDWLDGKHVVFGE+T+ LDVLRQIEAQG +DGKPKQKVIISDCGEY
Sbjct: 241 PNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGEY 300
>ref|XP_002693235.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Bos taurus].
Length = 124
Score = 243 bits (620), Expect = 2e-64
Identities = 112/119 (94%), Positives = 115/119 (96%)
Frame = +3
Query: 558 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 737
FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP
Sbjct: 5 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 64
Query: 738 NTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
NTNGSQF L CDKTDWLDGKHVVFGE+T+ LDVLRQIEAQG +DGKPKQKVIISDCGEY
Sbjct: 65 NTNGSQFLLMCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGEY 123
>ref|XP_002701382.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Bos taurus].
Length = 124
Score = 243 bits (620), Expect = 2e-64
Identities = 112/119 (94%), Positives = 115/119 (96%)
Frame = +3
Query: 558 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 737
FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP
Sbjct: 5 FGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 64
Query: 738 NTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
NTNGSQF L CDKTDWLDGKHVVFGE+T+ LDVLRQIEAQG +DGKPKQKVIISDCGEY
Sbjct: 65 NTNGSQFLLMCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGEY 123
>ref|XP_002690562.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like [Bos taurus].
Length = 164
Score = 234 bits (596), Expect = 1e-61
Identities = 106/161 (65%), Positives = 128/161 (79%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTGGKSIYG+KFDDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVFG+V E ++ + +E G ++GK + + I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKNITIADCGQ 163
>ref|XP_002690561.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like [Bos taurus].
Length = 164
Score = 234 bits (596), Expect = 1e-61
Identities = 106/161 (65%), Positives = 128/161 (79%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTGGKSIYG+KFDDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVFG+V E ++ + +E G ++GK + + I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKNITIADCGQ 163
>ref|XP_001252498.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like isoform 1 [Bos
taurus].
Length = 164
Score = 234 bits (596), Expect = 1e-61
Identities = 106/161 (65%), Positives = 128/161 (79%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTGGKSIYG+KFDDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVFG+V E ++ + +E G ++GK + + I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNTVEAMERFGSRNGKTSKNITIADCGQ 163
>ref|NP_001001597.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor [Bos
taurus].
Length = 209
Score = 232 bits (591), Expect = 5e-61
Identities = 105/163 (64%), Positives = 128/163 (78%)
Frame = +3
Query: 399 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 578
G + + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 36 GSHGSSSSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 95
Query: 579 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 758
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 96 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQF 155
Query: 759 FLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQK 887
F+ KTDWLDGKHVVFG V E +DV+++IE+ G + GK +K
Sbjct: 156 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKK 198
>ref|XP_002686758.1| PREDICTED: TRIM5/CypA fusion protein-like [Bos taurus].
Length = 164
Score = 224 bits (571), Expect = 1e-58
Identities = 104/161 (64%), Positives = 125/161 (77%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ +I + +P GR+ L +D VP TAEN L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFNIAVDGEPLGRVSFELFADKVPKTAENVHALRTGEKGFGYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGD T HNGTGGKSIYG+KFDDENFILKHTGPG+LS AN+GPNTNGSQFF KT+WL
Sbjct: 63 QGGDSTCHNGTGGKSIYGEKFDDENFILKHTGPGILSTANAGPNTNGSQFFTCTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVFG+V E +DV+ +E G ++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMDVVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|XP_868977.1| PREDICTED: TRIM5/CypA fusion protein-like isoform 1 [Bos taurus].
Length = 164
Score = 224 bits (571), Expect = 1e-58
Identities = 104/161 (64%), Positives = 125/161 (77%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ +I + +P GR+ L +D VP TAEN L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFNIAVDGEPLGRVSFELFADKVPKTAENVHALRTGEKGFGYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGD T HNGTGGKSIYG+KFDDENFILKHTGPG+LS AN+GPNTNGSQFF KT+WL
Sbjct: 63 QGGDSTCHNGTGGKSIYGEKFDDENFILKHTGPGILSTANAGPNTNGSQFFTCTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVFG+V E +DV+ +E G ++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMDVVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|NP_777017.1| E3 SUMO-protein ligase RanBP2 [Bos taurus].
Length = 3035
Score = 207 bits (528), Expect = 1e-53
Identities = 96/162 (59%), Positives = 124/162 (76%)
Frame = +3
Query: 426 SNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 605
+NP V+ DI ++P GRI + L S++VP TAENFR LCT EKGFGFK S FHR+IP F+
Sbjct: 2873 TNPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFGFKSSIFHRVIPDFV 2932
Query: 606 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 785
CQGGD T H+GTGG+SIYG KF+DENF +KHTGPGLLSMAN G +TN SQFF+T K +
Sbjct: 2933 CQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAER 2992
Query: 786 LDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
LD KHVVFG V + +D +++IE+ G G +++II++CG+
Sbjct: 2993 LDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQ 3034
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,044,410
Number of extensions: 1325631
Number of successful extensions: 5904
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 5842
Number of HSP's successfully gapped: 82
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013213
(1176 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127865.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 586 e-168
Alignment gi|XP_003359306.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 245 3e-65
Alignment gi|XP_001929518.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 245 3e-65
Alignment gi|NP_999518.1| peptidyl-prolyl cis-trans isomerase A [Sus scro... 237 1e-62
Alignment gi|XP_003127873.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 232 3e-61
Alignment gi|XP_003362121.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 231 6e-61
Alignment gi|XP_003124897.2| PREDICTED: e3 SUMO-protein ligase RanBP2 [Su... 204 1e-52
Alignment gi|XP_003129052.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 193 2e-49
Alignment gi|XP_003128148.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 191 9e-49
Alignment gi|XP_003356541.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 191 9e-49
>ref|XP_003127865.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1
[Sus scrofa].
Length = 301
Score = 586 bits (1510), Expect = e-168
Identities = 286/300 (95%), Positives = 287/300 (95%)
Frame = +3
Query: 15 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 194
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 195 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXX 374
AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSE 120
Query: 375 PPKVETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK 554
PPK ETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK
Sbjct: 121 PPKGETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK 180
Query: 555 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 734
GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG
Sbjct: 181 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 240
Query: 735 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
PNTNGSQFFLTCDKTDWLDGKHVVFGEVTE LDVLRQIEAQG +DGKPKQKVIISDCGEY
Sbjct: 241 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIISDCGEY 300
>ref|XP_003359306.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F,
mitochondrial-like [Sus scrofa].
Length = 207
Score = 245 bits (626), Expect = 3e-65
Identities = 110/171 (64%), Positives = 139/171 (81%)
Frame = +3
Query: 399 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 578
G+P++ + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 37 GDPSS--SARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 94
Query: 579 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 758
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 95 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQF 154
Query: 759 FLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
F+ KTDWLDGKHVVFG V E +DV+++IE+ G + GK +K++I+DCG+
Sbjct: 155 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 205
>ref|XP_001929518.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F, mitochondrial
[Sus scrofa].
Length = 207
Score = 245 bits (626), Expect = 3e-65
Identities = 110/171 (64%), Positives = 139/171 (81%)
Frame = +3
Query: 399 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 578
G+P++ + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 37 GDPSS--SARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 94
Query: 579 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 758
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 95 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQF 154
Query: 759 FLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
F+ KTDWLDGKHVVFG V E +DV+++IE+ G + GK +K++I+DCG+
Sbjct: 155 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 205
>ref|NP_999518.1| peptidyl-prolyl cis-trans isomerase A [Sus scrofa].
Length = 164
Score = 237 bits (604), Expect = 1e-62
Identities = 107/161 (66%), Positives = 130/161 (80%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTGGKSIYG+KFDDENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVFG+V E ++++ +E G ++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|XP_003127873.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like [Sus scrofa].
Length = 176
Score = 232 bits (592), Expect = 3e-61
Identities = 107/114 (93%), Positives = 109/114 (95%)
Frame = +3
Query: 522 ENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHT 701
ENFRCLCTHEKGFGFKG+SFH IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDEN ILKHT
Sbjct: 3 ENFRCLCTHEKGFGFKGTSFHCIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENCILKHT 62
Query: 702 GPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGR 863
GPGLLSMANSGPNTNGSQFFLTCDKTDWL+GKHVVFGEVTE LDVLRQIE GR
Sbjct: 63 GPGLLSMANSGPNTNGSQFFLTCDKTDWLEGKHVVFGEVTEGLDVLRQIEVGGR 116
>ref|XP_003362121.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F,
mitochondrial-like [Sus scrofa].
Length = 248
Score = 231 bits (589), Expect = 6e-61
Identities = 103/171 (60%), Positives = 136/171 (79%)
Frame = +3
Query: 399 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 578
G+P++ + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 78 GDPSS--SARNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 135
Query: 579 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 758
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DE+ +++ G+LSMAN+GPNTNGSQF
Sbjct: 136 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDESLVIQFAFAGVLSMANAGPNTNGSQF 195
Query: 759 FLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
F+ KTDWLDGKHVVFG V E +DV+++IE+ G + GK +K++I+DCG+
Sbjct: 196 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 246
>ref|XP_003124897.2| PREDICTED: e3 SUMO-protein ligase RanBP2 [Sus scrofa].
Length = 659
Score = 204 bits (518), Expect = 1e-52
Identities = 94/162 (58%), Positives = 122/162 (75%)
Frame = +3
Query: 426 SNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 605
+NP V+ D+ ++P GRI + L S+VVP TAENFR LCT EKGFG+K S FHR+IP F+
Sbjct: 496 TNPVVFFDVCADDQPLGRITMELFSNVVPQTAENFRALCTGEKGFGYKHSIFHRVIPDFV 555
Query: 606 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 785
CQGGD T H+G+GG+SIYG KF+DENF +KHTGPGLLSMAN G NTN SQFF+T K +
Sbjct: 556 CQGGDITKHDGSGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQNTNNSQFFITLKKAEH 615
Query: 786 LDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
LD KHVVFG V + +D +++IE+ G G +++ I +CG+
Sbjct: 616 LDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRITIVECGQ 657
>ref|XP_003129052.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Sus scrofa].
Length = 370
Score = 193 bits (490), Expect = 2e-49
Identities = 100/178 (56%), Positives = 124/178 (69%), Gaps = 9/178 (5%)
Frame = +3
Query: 405 PTAKKAR-SNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFG------ 563
P AK + SNP+V+ D+ IG + GRI + L +D+VP TAENFR LCT EKG G
Sbjct: 6 PQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKP 65
Query: 564 --FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 737
FKG FHRII +FM QGGDF+N NGTGG+SIYG+KF+DENF KH GLLSMAN+G
Sbjct: 66 LHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGC 125
Query: 738 NTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
NTNGSQFF+T T LDGKHVVFG+V + + V R +E + KP + +I++CGE
Sbjct: 126 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLCVIAECGE 183
>ref|XP_003128148.1| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like isoform 3
[Sus scrofa].
Length = 177
Score = 191 bits (484), Expect = 9e-49
Identities = 97/173 (56%), Positives = 119/173 (68%), Gaps = 6/173 (3%)
Frame = +3
Query: 411 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 575
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 576 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 755
+FHR+I FM QGGDF N +GTG SIY F D NF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADXNFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 756 FFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE-AQGRQDGKPKQKVIISDCGE 911
FF+TC K DWLDGKHVVFG++ + L V+R+IE + KPK V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
>ref|XP_003356541.1| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like [Sus scrofa].
Length = 177
Score = 191 bits (484), Expect = 9e-49
Identities = 97/173 (56%), Positives = 119/173 (68%), Gaps = 6/173 (3%)
Frame = +3
Query: 411 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 575
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 576 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 755
+FHR+I FM QGGDF N +GTG SIY F D NF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADXNFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 756 FFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE-AQGRQDGKPKQKVIISDCGE 911
FF+TC K DWLDGKHVVFG++ + L V+R+IE + KPK V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,716,104
Number of extensions: 856272
Number of successful extensions: 4007
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 3939
Number of HSP's successfully gapped: 69
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013213
(1176 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062362.1| peptidyl-prolyl cis-trans isomerase E [Mus musc... 582 e-166
Alignment gi|NP_598845.1| peptidyl-prolyl cis-trans isomerase F, mitochon... 245 4e-65
Alignment gi|NP_032933.1| peptidyl-prolyl cis-trans isomerase A [Mus musc... 236 3e-62
Alignment gi|XP_001002180.2| PREDICTED: peptidyl-prolyl cis-trans isomera... 228 9e-60
Alignment gi|XP_003086687.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 228 9e-60
Alignment gi|NP_035370.2| E3 SUMO-protein ligase RanBP2 [Mus musculus]. 209 3e-54
Alignment gi|NP_080628.1| peptidyl-prolyl cis-trans isomerase D [Mus musc... 197 1e-50
Alignment gi|XP_003085169.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 193 2e-49
Alignment gi|XP_001477014.2| PREDICTED: peptidyl-prolyl cis-trans isomera... 193 2e-49
Alignment gi|NP_001103599.1| peptidyl-prolyl cis-trans isomerase H isofor... 193 2e-49
>ref|NP_062362.1| peptidyl-prolyl cis-trans isomerase E [Mus musculus].
Length = 301
Score = 582 bits (1499), Expect = e-166
Identities = 282/300 (94%), Positives = 286/300 (95%)
Frame = +3
Query: 15 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 194
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 195 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXX 374
AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGPE 120
Query: 375 PPKVETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK 554
PPK E QEGEPTAKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEK
Sbjct: 121 PPKAEAQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK 180
Query: 555 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 734
GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG
Sbjct: 181 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 240
Query: 735 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
PNTNGSQFFLTCDKTDWLDGKHVVFGEVTE LDVLRQIEAQG +DGKPKQKV+I+DCGEY
Sbjct: 241 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGEY 300
>ref|NP_598845.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor [Mus
musculus].
Length = 206
Score = 245 bits (626), Expect = 4e-65
Identities = 109/171 (63%), Positives = 136/171 (79%)
Frame = +3
Query: 399 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 578
G A + NP VY+D+ +P GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 34 GARGANSSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 93
Query: 579 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 758
FHR+IP FMCQ GDFTNHNGTGG+SIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 94 FHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 153
Query: 759 FLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
F+ KTDWLDGKHVVFG V E +DV+++IE+ G + GK +K++I+DCG+
Sbjct: 154 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQ 204
>ref|NP_032933.1| peptidyl-prolyl cis-trans isomerase A [Mus musculus].
Length = 164
Score = 236 bits (602), Expect = 3e-62
Identities = 107/161 (66%), Positives = 131/161 (81%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ DI ++P GR+ L +D VP TAENFR L T EKGFG+KGSSFHRIIP FMC
Sbjct: 3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTGG+SIYG+KF+DENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVFG+V E ++++ +E G ++GK +K+ ISDCG+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQ 163
>ref|XP_001002180.2| PREDICTED: peptidyl-prolyl cis-trans isomerase A-like [Mus
musculus].
Length = 164
Score = 228 bits (580), Expect = 9e-60
Identities = 104/161 (64%), Positives = 128/161 (79%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ DI ++P GR+ L +D VP TAENF+ L T EKGFG+KGSSFHRIIP FMC
Sbjct: 3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFQALSTGEKGFGYKGSSFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTGG+SIYG+KF+DENFILKHTGPG+LSMAN+GPNTN SQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNSSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVF +V E ++ + +E G ++GK +K+ ISDCG+
Sbjct: 123 DGKHVVFEKVKEGMNTVEAMEHFGSRNGKTSKKITISDCGQ 163
>ref|XP_003086687.1| PREDICTED: peptidyl-prolyl cis-trans isomerase A-like [Mus
musculus].
Length = 164
Score = 228 bits (580), Expect = 9e-60
Identities = 104/161 (64%), Positives = 128/161 (79%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ DI ++P GR+ L +D VP TAENF+ L T EKGFG+KGSSFHRIIP FMC
Sbjct: 3 NPTVFFDITADDEPLGRVSFELFADKVPKTAENFQALSTGEKGFGYKGSSFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTGG+SIYG+KF+DENFILKHTGPG+LSMAN+GPNTN SQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNSSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVF +V E ++ + +E G ++GK +K+ ISDCG+
Sbjct: 123 DGKHVVFEKVKEGMNTVEAMEHFGSRNGKTSKKITISDCGQ 163
>ref|NP_035370.2| E3 SUMO-protein ligase RanBP2 [Mus musculus].
Length = 3053
Score = 209 bits (532), Expect = 3e-54
Identities = 97/162 (59%), Positives = 122/162 (75%)
Frame = +3
Query: 426 SNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 605
+NP V+ D+ +P GRI + L S++VP TAENFR LCT EKGFGFK S FHR++P F+
Sbjct: 2891 TNPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFGFKNSIFHRVVPDFI 2950
Query: 606 CQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 785
CQGGD T +NGTGG+SIYG KFDDENF LKHTGPGLLSMAN G NTN SQFF+T K +
Sbjct: 2951 CQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEH 3010
Query: 786 LDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
LD KHVVFG V + +D +R+IE+ G G +++ I++CG+
Sbjct: 3011 LDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQ 3052
>ref|NP_080628.1| peptidyl-prolyl cis-trans isomerase D [Mus musculus].
Length = 370
Score = 197 bits (502), Expect = 1e-50
Identities = 102/178 (57%), Positives = 124/178 (69%), Gaps = 9/178 (5%)
Frame = +3
Query: 405 PTAKKARS-NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFG------ 563
P AK + S NP+V+ D+ IG + GRI + L +D+VP TAENFR LCT EKG G
Sbjct: 6 PAAKPSNSKNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKP 65
Query: 564 --FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 737
FKG FHRII +FM QGGDF+N NGTGG+SIYG+KF+DENF KH GLLSMAN+GP
Sbjct: 66 LHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGP 125
Query: 738 NTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
NTNGSQFF+T T LDGKHVVFG+V + L V R +E KP + +I++CGE
Sbjct: 126 NTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGE 183
>ref|XP_003085169.1| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like [Mus
musculus].
Length = 199
Score = 193 bits (491), Expect = 2e-49
Identities = 99/176 (56%), Positives = 121/176 (68%), Gaps = 6/176 (3%)
Frame = +3
Query: 402 EPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGF 566
E A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+
Sbjct: 23 ESRANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGY 82
Query: 567 KGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTN 746
KGS+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TN
Sbjct: 83 KGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSPPGLLSMANSGPSTN 142
Query: 747 GSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE-AQGRQDGKPKQKVIISDCGE 911
G QFF+TC K DWLDGKHVVFG++ + L V+R+IE + KPK V+IS CGE
Sbjct: 143 GCQFFITCSKRDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 198
>ref|XP_001477014.2| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like [Mus
musculus].
Length = 199
Score = 193 bits (491), Expect = 2e-49
Identities = 99/176 (56%), Positives = 121/176 (68%), Gaps = 6/176 (3%)
Frame = +3
Query: 402 EPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGF 566
E A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+
Sbjct: 23 ESRANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGY 82
Query: 567 KGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTN 746
KGS+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TN
Sbjct: 83 KGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSPPGLLSMANSGPSTN 142
Query: 747 GSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE-AQGRQDGKPKQKVIISDCGE 911
G QFF+TC K DWLDGKHVVFG++ + L V+R+IE + KPK V+IS CGE
Sbjct: 143 GCQFFITCSKRDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 198
>ref|NP_001103599.1| peptidyl-prolyl cis-trans isomerase H isoform 1 [Mus musculus].
Length = 177
Score = 193 bits (490), Expect = 2e-49
Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 6/173 (3%)
Frame = +3
Query: 411 AKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHE-----KGFGFKGS 575
A + NP V+ D+ IG + GR++I L +DVVP TAENFR CT E G+KGS
Sbjct: 4 ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 576 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 755
+FHR+I FM QGGDF N +GTG SIY F DENF L+H+ PGLLSMANSGP+TNG Q
Sbjct: 64 TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQ 123
Query: 756 FFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE-AQGRQDGKPKQKVIISDCGE 911
FF+TC K DWLDGKHVVFG++ + L V+R+IE + KPK V+IS CGE
Sbjct: 124 FFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGE 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,761,049
Number of extensions: 1105873
Number of successful extensions: 4932
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 4844
Number of HSP's successfully gapped: 97
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013213
(1176 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006103.1| peptidyl-prolyl cis-trans isomerase E isoform 1... 582 e-166
Alignment gi|NP_982281.1| peptidyl-prolyl cis-trans isomerase E isoform 2... 545 e-155
Alignment gi|NP_001181936.1| peptidyl-prolyl cis-trans isomerase E isofor... 544 e-155
Alignment gi|NP_005720.1| peptidyl-prolyl cis-trans isomerase F, mitochon... 253 3e-67
Alignment gi|NP_066953.1| peptidyl-prolyl cis-trans isomerase A [Homo sap... 235 5e-62
Alignment gi|NP_001129261.1| peptidylprolyl cis-trans isomerase A-like 4A... 216 4e-56
Alignment gi|NP_001137355.1| peptidylprolyl cis-trans isomerase A-like 4A... 216 4e-56
Alignment gi|NP_839944.1| peptidylprolyl cis-trans isomerase A-like 4B [H... 216 4e-56
Alignment gi|NP_001116540.1| peptidylprolyl cis-trans isomerase A-like 4G... 213 3e-55
Alignment gi|NP_001137504.1| peptidylprolyl isomerase A (cyclophilin A)-l... 211 1e-54
>ref|NP_006103.1| peptidyl-prolyl cis-trans isomerase E isoform 1 [Homo sapiens].
Length = 301
Score = 582 bits (1501), Expect = e-166
Identities = 283/300 (94%), Positives = 286/300 (95%)
Frame = +3
Query: 15 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 194
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 195 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXX 374
AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSE 120
Query: 375 PPKVETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK 554
PPK ETQEGEP AKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEK
Sbjct: 121 PPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK 180
Query: 555 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 734
GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG
Sbjct: 181 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 240
Query: 735 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
PNTNGSQFFLTCDKTDWLDGKHVVFGEVTE LDVLRQIEAQG +DGKPKQKVII+DCGEY
Sbjct: 241 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 300
>ref|NP_982281.1| peptidyl-prolyl cis-trans isomerase E isoform 2 [Homo sapiens].
Length = 296
Score = 545 bits (1405), Expect = e-155
Identities = 266/281 (94%), Positives = 267/281 (95%)
Frame = +3
Query: 15 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 194
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 195 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXX 374
AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSE 120
Query: 375 PPKVETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK 554
PPK ETQEGEP AKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEK
Sbjct: 121 PPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK 180
Query: 555 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 734
GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG
Sbjct: 181 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 240
Query: 735 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQ 857
PNTNGSQFFLTCDKTDWLDGKHVVFGEVTE LDVLRQIE Q
Sbjct: 241 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEKQ 281
>ref|NP_001181936.1| peptidyl-prolyl cis-trans isomerase E isoform 4 [Homo sapiens].
Length = 314
Score = 544 bits (1401), Expect = e-155
Identities = 265/279 (94%), Positives = 266/279 (95%)
Frame = +3
Query: 15 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 194
MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 195 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLXXXXXXXXXX 374
AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTL
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSE 120
Query: 375 PPKVETQEGEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEK 554
PPK ETQEGEP AKKARSNPQVYMDIKIGNKPAGRIQ+LLRSDVVPMTAENFRCLCTHEK
Sbjct: 121 PPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK 180
Query: 555 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 734
GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG
Sbjct: 181 GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSG 240
Query: 735 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTESLDVLRQIE 851
PNTNGSQFFLTCDKTDWLDGKHVVFGEVTE LDVLRQIE
Sbjct: 241 PNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 279
>ref|NP_005720.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor
[Homo sapiens].
Length = 207
Score = 253 bits (645), Expect = 3e-67
Identities = 110/171 (64%), Positives = 139/171 (81%)
Frame = +3
Query: 399 GEPTAKKARSNPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSS 578
G+P++ + NP VY+D+ KP GR+ + L++DVVP TAENFR LCT EKGFG+KGS+
Sbjct: 35 GDPSSSSSSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST 94
Query: 579 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 758
FHR+IP FMCQ GDFTNHNGTGGKSIYG +F DENF LKH GPG+LSMAN+GPNTNGSQF
Sbjct: 95 FHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQF 154
Query: 759 FLTCDKTDWLDGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
F+ KTDWLDGKHVVFG V E +DV+++IE+ G + G+ +K++I+DCG+
Sbjct: 155 FICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQ 205
>ref|NP_066953.1| peptidyl-prolyl cis-trans isomerase A [Homo sapiens].
Length = 165
Score = 235 bits (600), Expect = 5e-62
Identities = 106/161 (65%), Positives = 130/161 (80%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
NP V+ DI + +P GR+ L +D VP TAENFR L T EKGFG+KGS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTGGKSIYG+KF+DENFILKHTGPG+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGE 911
DGKHVVFG+V E ++++ +E G ++GK +K+ I+DCG+
Sbjct: 123 DGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 163
>ref|NP_001129261.1| peptidylprolyl cis-trans isomerase A-like 4A/B/C [Homo sapiens].
Length = 164
Score = 216 bits (549), Expect = 4e-56
Identities = 100/162 (61%), Positives = 123/162 (75%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
N V+ DI + KP GRI I L +D + TAENFR L T EKGF +KGS FHRIIP FMC
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTG KSIYG+KFDDEN I KHTG G+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
DGKHV FG+V E ++++ +E G ++ K +K+ I+DCG++
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF 164
>ref|NP_001137355.1| peptidylprolyl cis-trans isomerase A-like 4A/B/C [Homo sapiens].
Length = 164
Score = 216 bits (549), Expect = 4e-56
Identities = 100/162 (61%), Positives = 123/162 (75%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
N V+ DI + KP GRI I L +D + TAENFR L T EKGF +KGS FHRIIP FMC
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTG KSIYG+KFDDEN I KHTG G+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
DGKHV FG+V E ++++ +E G ++ K +K+ I+DCG++
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF 164
>ref|NP_839944.1| peptidylprolyl cis-trans isomerase A-like 4B [Homo sapiens].
Length = 164
Score = 216 bits (549), Expect = 4e-56
Identities = 100/162 (61%), Positives = 123/162 (75%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
N V+ DI + KP GRI I L +D + TAENFR L T EKGF +KGS FHRIIP FMC
Sbjct: 3 NSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT HNGTG KSIYG+KFDDEN I KHTG G+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
DGKHV FG+V E ++++ +E G ++ K +K+ I+DCG++
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF 164
>ref|NP_001116540.1| peptidylprolyl cis-trans isomerase A-like 4G [Homo sapiens].
Length = 164
Score = 213 bits (542), Expect = 3e-55
Identities = 98/162 (60%), Positives = 123/162 (75%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
N ++ DI + KP GRI I +D +P TAENFR L T EKGF +KGS FHRIIP FMC
Sbjct: 3 NSVIFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT+ NGTG KSIYG+KFDDEN I KHTG G+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
DGKHV FG+V E ++++ +E G ++ K +K+ I+DCG++
Sbjct: 123 DGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF 164
>ref|NP_001137504.1| peptidylprolyl isomerase A (cyclophilin A)-like 4E [Homo sapiens].
Length = 164
Score = 211 bits (537), Expect = 1e-54
Identities = 99/162 (61%), Positives = 121/162 (74%)
Frame = +3
Query: 429 NPQVYMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 608
N V+ +I KP GRI I L +D +P TAENFR L T EKGF +KGS FHRIIP FMC
Sbjct: 3 NSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMC 62
Query: 609 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 788
QGGDFT NGTG KSIYG+KFDDEN I KHTG G+LSMAN+GPNTNGSQFF+ KT+WL
Sbjct: 63 QGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWL 122
Query: 789 DGKHVVFGEVTESLDVLRQIEAQGRQDGKPKQKVIISDCGEY 914
DGKHV FG+V E ++++ E G ++ K +K+ I+DCG++
Sbjct: 123 DGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF 164
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,113,816
Number of extensions: 1332981
Number of successful extensions: 6075
Number of sequences better than 1.0e-05: 111
Number of HSP's gapped: 5991
Number of HSP's successfully gapped: 118
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013213
(1176 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 369 2e-99
Sscrofa_Chr18 84 2e-13
Sscrofa_Chr01 78 1e-11
Sscrofa_Chr14 76 5e-11
gb|GL896312.2| Sus scrofa unplaced genomic scaffold ChrUScaf4196 60 3e-06
>Sscrofa_Chr06
|| Length = 157765593
Score = 369 bits (186), Expect = 2e-99
Identities = 189/190 (99%)
Strand = Plus / Plus
Query: 520 cagagaacttccgctgcctgtgcacccacgagaagggctttggcttcaagggcagcagct 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88650275 cagagaacttccgctgcctgtgcacccacgagaagggctttggcttcaagggcagcagct 88650334
Query: 580 tccaccgcatcatcccccagttcatgtgccagggcggcgatttcaccaaccacaacggca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88650335 tccaccgcatcatcccccagttcatgtgccagggcggcgatttcaccaaccacaacggca 88650394
Query: 640 ctgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaagcaca 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88650395 ctgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaagcaca 88650454
Query: 700 cgggaccagg 709
| ||||||||
Sbjct: 88650455 caggaccagg 88650464
Score = 337 bits (170), Expect = 8e-90
Identities = 185/190 (97%)
Strand = Plus / Minus
Query: 520 cagagaacttccgctgcctgtgcacccacgagaagggctttggcttcaagggcagcagct 579
|||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct: 88461371 cagagaacttccgctgcctgtgcacccatgagaagggctttggcttcaagggtaccagct 88461312
Query: 580 tccaccgcatcatcccccagttcatgtgccagggcggcgatttcaccaaccacaacggca 639
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88461311 tccactgcatcatcccccagttcatgtgccagggcggcgatttcaccaaccacaacggca 88461252
Query: 640 ctgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaagcaca 699
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 88461251 ctgggggcaagtccatctatgggaagaagtttgatgatgaaaactgtatcctcaagcaca 88461192
Query: 700 cgggaccagg 709
||||||||||
Sbjct: 88461191 cgggaccagg 88461182
Score = 280 bits (141), Expect = 2e-72
Identities = 235/266 (88%), Gaps = 4/266 (1%)
Strand = Plus / Plus
Query: 850 aggcccagggccggcaggacgggaagcccaagcagaaggtgatcatctccgactgtgggg 909
||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 88651740 aggcccagggcagcaaggacgggaagcccaagcagaaggtgatcatctctgactgtgggg 88651799
Query: 910 agtacgcgtgaggtgccagagggctcctgttggcggca----gcagggccttgtgtcctg 965
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 88651800 agtacgcgtgaggcgccagagggctcctgttggcggcaggcagcagggccttgtgtcctg 88651859
Query: 966 gtcagcatggggcagctcctccgcgggcaaagcccggcctcctctggctctgccccaggt 1025
||||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||
Sbjct: 88651860 gtcagcatggggcagctcctctgcaggcacagcctggcctcctctggctctgccccaggt 88651919
Query: 1026 gtggccgaaggcccaatggccacccttccctcctgaaagctggtgatggcctttcccgcc 1085
||||| || |||| | |||||||||||||| || ||||| ||||||||||| |||
Sbjct: 88651920 gtggctgagggcctgagtgccacccttccctctggacagctgtgcatggcctttccagcc 88651979
Query: 1086 cttggttgcagggcctcccctgggcc 1111
||| | ||||||||| ||||||||
Sbjct: 88651980 tttgctgccagggcctctcctgggcc 88652005
Score = 278 bits (140), Expect = 7e-72
Identities = 146/148 (98%)
Strand = Plus / Plus
Query: 705 ccaggcctgctctccatggccaattctggcccaaacaccaatggctcccagttcttcctg 764
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 88651439 ccaggcctgctctccatggctaattctggcccaaacaccaatggctcccagttcttcctg 88651498
Query: 765 acgtgtgacaagacagattggctggacggcaagcacgtcgtgttcggggaggtcacagaa 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88651499 acgtgtgacaagacagattggctggacggcaagcacgtcgtgttcggggaggtcacagaa 88651558
Query: 825 agcctggacgtcttgcggcagattgagg 852
|||||||||||||||||||||||||||
Sbjct: 88651559 ggcctggacgtcttgcggcagattgagg 88651586
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 397 agggggagcccactgccaaaaaggcccggtcaaacccccaagtgtacatggacatcaaga 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88645110 agggggagcccactgccaaaaaggcccggtcaaacccccaagtgtacatggacatcaaga 88645169
Query: 457 ttgggaacaaaccagccggccgcatccagatactcttgcgttcagacgtcgttcccatga 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88645170 ttgggaacaaaccagccggccgcatccagatactcttgcgttcagacgtcgttcccatga 88645229
Query: 517 cagcag 522
||||||
Sbjct: 88645230 cagcag 88645235
Score = 246 bits (124), Expect = 2e-62
Identities = 142/148 (95%)
Strand = Plus / Minus
Query: 705 ccaggcctgctctccatggccaattctggcccaaacaccaatggctcccagttcttcctg 764
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 88453976 ccaggcctgctctccatggccaactccggcccaaacaccaacggctcccagttcttcctg 88453917
Query: 765 acgtgtgacaagacagattggctggacggcaagcacgtcgtgttcggggaggtcacagaa 824
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 88453916 acgtgtgacaagacagattggctggagggcaagcacgtcgtgttcggggaggtcacggaa 88453857
Query: 825 agcctggacgtcttgcggcagattgagg 852
|||||||||||||||||||||||||||
Sbjct: 88453856 ggcctggacgtcttgcggcagattgagg 88453829
Score = 200 bits (101), Expect = 1e-48
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 295 cagtttggtccgatgatgactggttgaagaagttttctggaaagactcttgaagagaata 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88642581 cagtttggtccgatgatgactggttgaagaagttttctggaaagactcttgaagagaata 88642640
Query: 355 aagaagaagaaggctcagagcctcccaaagtagaaacccaggagg 399
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 88642641 aagaagaagaaggctcagagcctcccaaaggagaaacccaggagg 88642685
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 45 ggtggacttgcagaggaggtggatgataaagttcttcatgctgcttttatcccttttgga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88638324 ggtggacttgcagaggaggtggatgataaagttcttcatgctgcttttatcccttttgga 88638383
Query: 105 gacatcacagatatccagattcctctggattatgaaacag 144
||||||||||||||||||||||||||||||||||||||||
Sbjct: 88638384 gacatcacagatatccagattcctctggattatgaaacag 88638423
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 215 gaatgaatctgagctctttggacggacaattcgtgtcaatttggcaaaaccaatgaggat 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88641986 gaatgaatctgagctctttggacggacaattcgtgtcaatttggcaaaaccaatgaggat 88642045
Query: 275 taaggaaggctcttccagaccag 297
|||||||||||||||||||||||
Sbjct: 88642046 taaggaaggctcttccagaccag 88642068
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 142 cagaaaagcaccgaggatttgcttttgttgagtttgagttggccgagg 189
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88639502 cagaaaagcaccgaggatttgcttttgttgagtttgagttggccgagg 88639549
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 4 gtgcgagcaagatggccactaccaagcgagtgttgtacgtgggtg 48
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88636985 gtgcgagcaagatggccactaccaagcgagtgttgtacgtgggtg 88637029
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 143 agaaaagcaccgaggatttgcttttgttgagtttgagttggc 184
|||||||||| ||||||||||||||||||| | |||||||||
Sbjct: 88465313 agaaaagcactgaggatttgcttttgttgaatctgagttggc 88465272
>Sscrofa_Chr18
|| Length = 61220071
Score = 83.8 bits (42), Expect = 2e-13
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 636 ggcactgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaag 695
|||||||| ||||||||||||||||| |||| ||||||||||| || |||||||| |||
Sbjct: 55289411 ggcactggtggcaagtccatctatggagagaaatttgatgatgagaattttatcctgaag 55289470
Query: 696 cacacgggaccaggcctgctctccatggccaattctggcccaaacaccaatggctcccag 755
|| ||||| || ||| | | |||||||| ||| ||||||| ||||| || || ||||||
Sbjct: 55289471 catacgggtcctggcatcttgtccatggcaaatgctggccccaacacaaacggttcccag 55289530
Query: 756 tt 757
||
Sbjct: 55289531 tt 55289532
>Sscrofa_Chr01
|| Length = 315321322
Score = 77.8 bits (39), Expect = 1e-11
Identities = 126/155 (81%)
Strand = Plus / Plus
Query: 603 atgtgccagggcggcgatttcaccaaccacaacggcactgggggcaagtccatctatggg 662
||||||||||| || || ||||| ||| || |||||||| |||||||||||||||||
Sbjct: 227347269 atgtgccagggtggtgacttcacacgccataatggcactggtggcaagtccatctatgga 227347328
Query: 663 aagaagtttgatgatgaaaactttatcctcaagcacacgggaccaggcctgctctccatg 722
|||| ||||||||||| || |||||||| ||||| | ||| || ||| | | ||||||
Sbjct: 227347329 gagaaatttgatgatgagaattttatcctgaagcataagggtcctggcatcttgtccatg 227347388
Query: 723 gccaattctggcccaaacaccaatggctcccagtt 757
|| ||| ||||||| ||||| || || ||||||||
Sbjct: 227347389 gcaaatgctggccccaacacaaacggttcccagtt 227347423
>Sscrofa_Chr14
|| Length = 153851969
Score = 75.8 bits (38), Expect = 5e-11
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 636 ggcactgggggcaagtccatctatgggaagaagtttgatgatgaaaactttatcctcaag 695
|||||||| ||||||||||||||||| |||| ||||||||||| || || | ||| |||
Sbjct: 110664985 ggcactggtggcaagtccatctatggagagaaatttgatgatgagaatttcaccctgaag 110664926
Query: 696 cacacgggaccaggcctgctctccatggccaattctggcccaaacaccaatggctcccag 755
|| ||||| || ||| | | |||||||| ||| ||||||| ||||| ||||| ||||||
Sbjct: 110664925 catacgggtcctggcatcttgtccatggcaaatgctggccccaacacaaatggttcccag 110664866
Query: 756 tt 757
||
Sbjct: 110664865 tt 110664864
Score = 60.0 bits (30), Expect = 3e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 609 cagggcggcgatttcaccaaccacaacggcactgggggcaagtccatcta 658
|||| |||||| |||||||||||||||||||| || || |||||||||||
Sbjct: 88338059 caggccggcgacttcaccaaccacaacggcacaggagggaagtccatcta 88338108
>gb|GL896312.2| Sus scrofa unplaced genomic scaffold ChrUScaf4196
Length = 122358
Score = 60.0 bits (30), Expect = 3e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 609 cagggcggcgatttcaccaaccacaacggcactgggggcaagtccatcta 658
|||| |||||| |||||||||||||||||||| || || |||||||||||
Sbjct: 103254 caggccggcgacttcaccaaccacaacggcacaggagggaagtccatcta 103303
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,090,612
Number of extensions: 266
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 17
Length of query: 1176
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1155
Effective length of database: 2,808,413,156
Effective search space: 3243717195180
Effective search space used: 3243717195180
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)