Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013214
(1189 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540154.2| PREDICTED: similar to galactose mutarotase (ald... 637 0.0
>ref|XP_540154.2| PREDICTED: similar to galactose mutarotase (aldose 1-epimerase)
[Canis familiaris].
Length = 342
Score = 637 bits (1643), Expect = 0.0
Identities = 304/325 (93%), Positives = 317/325 (97%)
Frame = +1
Query: 214 MVSVTRSVFGDLPSGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFA 393
MVSVTR+VFGDLPSGAGTVEKFQLQSD L+VDIISWGCTITALE KDRQGRASDVVLGFA
Sbjct: 1 MVSVTRAVFGDLPSGAGTVEKFQLQSDLLKVDIISWGCTITALEAKDRQGRASDVVLGFA 60
Query: 394 ELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTP 573
EL+ YLQK PYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGG+RGFDKVLWTP
Sbjct: 61 ELEGYLQKQPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGIRGFDKVLWTP 120
Query: 574 RVLSNGIEFSRVSPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQTTPVNLTNHSYFN 753
VLSNG++FSRVSPDGEEGYPGELKVWVTYTLDGGEL +NYRAQASQTTPVNLTNHSYFN
Sbjct: 121 EVLSNGVQFSRVSPDGEEGYPGELKVWVTYTLDGGELKINYRAQASQTTPVNLTNHSYFN 180
Query: 754 LAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHIN 933
LAGQGSPNIYDHEVTI+ADAFLPVDETLIPTGE+APVQGTAFDLRKPVELGKHLQEFHIN
Sbjct: 181 LAGQGSPNIYDHEVTIDADAFLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQEFHIN 240
Query: 934 GFDHNFCLKRSKEKQFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPK 1113
GFDHNFCLK SKEK FCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGK+GAVYPK
Sbjct: 241 GFDHNFCLKGSKEKHFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKSGAVYPK 300
Query: 1114 HSGFCLETQNWPNAVNQPHFPPVLL 1188
HSGFCLETQNWP+AV+QP+FPPVLL
Sbjct: 301 HSGFCLETQNWPDAVHQPNFPPVLL 325
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,352,427
Number of extensions: 1682248
Number of successful extensions: 5292
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5289
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 291
Effective length of database: 15,374,224
Effective search space: 4473899184
Effective search space used: 4473899184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013214
(1189 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029967.1| aldose 1-epimerase [Bos taurus]. 637 0.0
>ref|NP_001029967.1| aldose 1-epimerase [Bos taurus].
Length = 342
Score = 637 bits (1642), Expect = 0.0
Identities = 306/325 (94%), Positives = 316/325 (97%)
Frame = +1
Query: 214 MVSVTRSVFGDLPSGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFA 393
MVSVTR+VFGDLP GAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGF
Sbjct: 1 MVSVTRAVFGDLPLGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFD 60
Query: 394 ELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTP 573
EL+ YLQK PYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGV+GFDKVLWTP
Sbjct: 61 ELEGYLQKQPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVKGFDKVLWTP 120
Query: 574 RVLSNGIEFSRVSPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQTTPVNLTNHSYFN 753
RVLSNG+EFSRVSPDGEEGYPGELKVWV YTLDGGELVVNYRAQASQTTPVNLTNHSYFN
Sbjct: 121 RVLSNGVEFSRVSPDGEEGYPGELKVWVMYTLDGGELVVNYRAQASQTTPVNLTNHSYFN 180
Query: 754 LAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHIN 933
LAGQGSPNIYDHEVTIEADAFLPVDE LIPTGEIA VQGTAFDLRKPVELGKHLQEFH+N
Sbjct: 181 LAGQGSPNIYDHEVTIEADAFLPVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVN 240
Query: 934 GFDHNFCLKRSKEKQFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPK 1113
GFDHNFCLK SKEK+FCARVHHAGSGRVLEVYTTQPG+QFYTGNFLDGTLKGK+GA YPK
Sbjct: 241 GFDHNFCLKGSKEKRFCARVHHAGSGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPK 300
Query: 1114 HSGFCLETQNWPNAVNQPHFPPVLL 1188
HSGFCLETQ+WP+AVNQPHFPPVLL
Sbjct: 301 HSGFCLETQSWPDAVNQPHFPPVLL 325
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,908,332
Number of extensions: 1622256
Number of successful extensions: 5235
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5229
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 292
Effective length of database: 14,240,222
Effective search space: 4158144824
Effective search space used: 4158144824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013214
(1189 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999571.1| aldose 1-epimerase [Sus scrofa]. 672 0.0
>ref|NP_999571.1| aldose 1-epimerase [Sus scrofa].
Length = 342
Score = 672 bits (1733), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Frame = +1
Query: 214 MVSVTRSVFGDLPSGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFA 393
MVSVTRSVFGDLPSGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFA
Sbjct: 1 MVSVTRSVFGDLPSGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFA 60
Query: 394 ELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTP 573
ELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTP
Sbjct: 61 ELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTP 120
Query: 574 RVLSNGIEFSRVSPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQTTPVNLTNHSYFN 753
RVLSNGIEFSRVSPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQTTPVNLTNHSYFN
Sbjct: 121 RVLSNGIEFSRVSPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQTTPVNLTNHSYFN 180
Query: 754 LAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHIN 933
LAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHIN
Sbjct: 181 LAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHIN 240
Query: 934 GFDHNFCLKRSKEKQFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPK 1113
GFDHNFCLKRSKEKQFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPK
Sbjct: 241 GFDHNFCLKRSKEKQFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPK 300
Query: 1114 HSGFCLETQNWPNAVNQPHFPPVLL 1188
HSGFCLETQNWPNAVNQPHFPPVLL
Sbjct: 301 HSGFCLETQNWPNAVNQPHFPPVLL 325
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,165,521
Number of extensions: 1050347
Number of successful extensions: 3505
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3498
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,829,335
Effective search space: 2604653825
Effective search space used: 2604653825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013214
(1189 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_795937.1| aldose 1-epimerase [Mus musculus]. 592 e-169
>ref|NP_795937.1| aldose 1-epimerase [Mus musculus].
Length = 342
Score = 592 bits (1525), Expect = e-169
Identities = 279/325 (85%), Positives = 302/325 (92%)
Frame = +1
Query: 214 MVSVTRSVFGDLPSGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFA 393
MVSVTR+VFG+LPSG GTVEKFQL+SDQL VDIISWGCTITAL+VKDRQG+ASDVVLGFA
Sbjct: 1 MVSVTRTVFGELPSGGGTVEKFQLRSDQLSVDIISWGCTITALQVKDRQGKASDVVLGFA 60
Query: 394 ELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTP 573
EL+ YLQK PYFGAVVGRVANRIAKG FT+ GKEY L +N PNSLHGG GFDKVLWTP
Sbjct: 61 ELEGYLQKQPYFGAVVGRVANRIAKGRFTIGGKEYHLPVNREPNSLHGGFTGFDKVLWTP 120
Query: 574 RVLSNGIEFSRVSPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQTTPVNLTNHSYFN 753
+VL+NG++F RVSPDGEEGYPGELKVWVTYTLDGGELV+NYRAQASQTTPVNLTNHSYFN
Sbjct: 121 QVLTNGVQFFRVSPDGEEGYPGELKVWVTYTLDGGELVINYRAQASQTTPVNLTNHSYFN 180
Query: 754 LAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHIN 933
LAGQGSPNIYDHEVTI ADA+LPVDETLIPTG IAPV+GTAFDLRKPVELG HLQ++HI+
Sbjct: 181 LAGQGSPNIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGTHLQDYHIH 240
Query: 934 GFDHNFCLKRSKEKQFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPK 1113
GFDHNFCLK SKEK+FCARV HA SGR+LEVYTTQPG+QFYTGNFLDGTLKGK GAVYPK
Sbjct: 241 GFDHNFCLKESKEKKFCARVRHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPK 300
Query: 1114 HSGFCLETQNWPNAVNQPHFPPVLL 1188
HSG CLETQNWP++VNQP FPP LL
Sbjct: 301 HSGLCLETQNWPDSVNQPQFPPALL 325
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,780,528
Number of extensions: 1368499
Number of successful extensions: 4264
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4258
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 293
Effective length of database: 12,523,851
Effective search space: 3669488343
Effective search space used: 3669488343
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013214
(1189 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_620156.1| aldose 1-epimerase [Homo sapiens]. 615 e-176
>ref|NP_620156.1| aldose 1-epimerase [Homo sapiens].
Length = 342
Score = 615 bits (1586), Expect = e-176
Identities = 292/325 (89%), Positives = 307/325 (94%)
Frame = +1
Query: 214 MVSVTRSVFGDLPSGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFA 393
M SVTR+VFG+LPSG GTVEKFQLQSD LRVDIISWGCTITALEVKDRQGRASDVVLGFA
Sbjct: 1 MASVTRAVFGELPSGGGTVEKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFA 60
Query: 394 ELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTP 573
EL+ YLQK PYFGAV+GRVANRIAKGTF +DGKEY LAIN PNSLHGGVRGFDKVLWTP
Sbjct: 61 ELEGYLQKQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTP 120
Query: 574 RVLSNGIEFSRVSPDGEEGYPGELKVWVTYTLDGGELVVNYRAQASQTTPVNLTNHSYFN 753
RVLSNG++FSR+SPDGEEGYPGELKVWVTYTLDGGEL+VNYRAQASQ TPVNLTNHSYFN
Sbjct: 121 RVLSNGVQFSRISPDGEEGYPGELKVWVTYTLDGGELIVNYRAQASQATPVNLTNHSYFN 180
Query: 754 LAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHIN 933
LAGQ SPNI DHEVTIEAD +LPVDETLIPTGE+APVQGTAFDLRKPVELGKHLQ+FH+N
Sbjct: 181 LAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLN 240
Query: 934 GFDHNFCLKRSKEKQFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPK 1113
GFDHNFCLK SKEK FCARVHHA SGRVLEVYTTQPG+QFYTGNFLDGTLKGK GAVYPK
Sbjct: 241 GFDHNFCLKGSKEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPK 300
Query: 1114 HSGFCLETQNWPNAVNQPHFPPVLL 1188
HSGFCLETQNWP+AVNQP FPPVLL
Sbjct: 301 HSGFCLETQNWPDAVNQPRFPPVLL 325
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,236,437
Number of extensions: 1644766
Number of successful extensions: 5347
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5343
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 291
Effective length of database: 14,835,944
Effective search space: 4317259704
Effective search space used: 4317259704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013214
(1189 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1237 0.0
Sscrofa_Chr03 781 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1237 bits (624), Expect = 0.0
Identities = 899/997 (90%), Gaps = 34/997 (3%)
Strand = Plus / Plus
Query: 179 ggacctggagcaactacacaccccaagctttcctaatggtttcagttacaagatccgtgt 238
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 293662992 ggacctggagcacctacacaccccaagctttcctcatggtttcagttacaagatctgtgt 293663051
Query: 239 ttggagacctcccctcgggggcagggacggtggaaaagttccagctgcaatcagaccagc 298
||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 293663052 ttggagacctccccttgggggcagggaccatggaaaagttccagctgcaagcagaccagc 293663111
Query: 299 tgagagtggacatcatctcctggggctgcaccatcacggccctggaggtcaaagacaggc 358
|| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 293663112 tgggagtggaaatcatctcctcgggctgcaccatcacggccctggaggtcaaagacaggc 293663171
Query: 359 agggcagagcctcagacgtggtgcttggctttgctgaattgaaagagtacctccaaaaac 418
| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |
Sbjct: 293663172 aaggcagagcctcagatgtggtgcttggctttgctgaattggaagggtacctccaaaagc 293663231
Query: 419 atccctactttggagcagtggttggcagagtggcaaaccgaattgccaaaggaacattca 478
|||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||
Sbjct: 293663232 atccctactttggagcagtggttggcagggtggcaaagcaaattgccaaaggaacat-ca 293663290
Query: 479 cattggatgggaaggagtataagctggccatcaacaacgggcccaacagcctgcatggag 538
| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 293663291 cgttggatgggaaggagtataagctggcca---------------acagcctgcacagag 293663335
Query: 539 gagtcagaggatttgataaggtcctctggacccctcgggtgctgtcaaatggcatcgagt 598
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||
Sbjct: 293663336 gagtcagaggatttgataaggtcctctggaccccttgggtgctctcaaatggcatcaagt 293663395
Query: 599 tctcgagggtcagtccagatggtgaggaaggctaccctggagagttaaaagtctgggtga 658
|||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 293663396 tctcgagggtcagtccagatggtgag------------------ttaaaagtctgggtga 293663437
Query: 659 catacacgctggatggtggggagctcgtggtcaactatcgagcacaggccagtcagacca 718
|||||||||| ||||| |||||||| ||||||||| || |||||||||||||| ||||
Sbjct: 293663438 catacacgctagatggcagggagctcatggtcaactctcaagcacaggccagtcggaccg 293663497
Query: 719 ccccagtcaatctgaccaaccactcttatttcaacctggcgggccagggttccccaaata 778
|||||||||||||||||| ||| |||||||||||||| | ||||||||||||||| ||||
Sbjct: 293663498 ccccagtcaatctgaccagccattcttatttcaacctcgtgggccagggttccccgaata 293663557
Query: 779 tatatgaccatgaagtcactatagaagctgatgcttttttgcctgtggatgaaaccctaa 838
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 293663558 tatatgaccatgaagtcactatagaagctgatgcttttttgcctgcagatgaaaacctaa 293663617
Query: 839 tccctacaggagaaattgctccagtgcaaggaactgcatttgatctgaggaagccagtgg 898
|||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||| |
Sbjct: 293663618 tccctacaggagaagttgctccaatgcaaggagctgcatttgatctgaggaaaccagcag 293663677
Query: 899 agcttggaaaacacctgcaggagttccacatcaatggctttgaccacaatttctgtctga 958
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 293663678 agcttggaaaacacctgcaggagttccacatcaatggctttgaccacacgttccgtctga 293663737
Query: 959 agagatctaaagaaaagcaattttgtgcacgggtccatcatgctggaagcgggagggtcc 1018
|| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct: 293663738 agggatctaaagaaaagcaatttcgtgtacgggtccatcatgctggaagcgggagggtac 293663797
Query: 1019 tggaagtgtacactacccagcctgggatccagttttacacgggcaacttcctggatggca 1078
|||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 293663798 tggaagtgtataccacccagcctgggatccagttttacacgggcaacttcctgggtggca 293663857
Query: 1079 cgctgaagggcaaaactggagcagtctatcccaagcactctggtttctgccttgagaccc 1138
||||||| ||| | ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 293663858 cgctgaaaggccagactggagcagtctgtcccaagcactctggtttctgcctcgagaccc 293663917
Query: 1139 agaactggcctaatgcagtcaatcagccccacttccc 1175
|||||||||| || ||||||||||||||||||||||
Sbjct: 293663918 agaactggcccgatacagtcaatcagccccacttccc 293663954
>Sscrofa_Chr03
|| Length = 144787322
Score = 781 bits (394), Expect = 0.0
Identities = 401/402 (99%), Gaps = 1/402 (0%)
Strand = Plus / Minus
Query: 3 aattttgccttggtgcc-ccctcaggcaaaggaatgatttcgaaaggccccggaggatat 61
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107827574 aattttgccttggtgccaccctcaggcaaaggaatgatttcgaaaggccccggaggatat 107827515
Query: 62 ttttcgcagaagtggtcactccctaaatcccggcaaggaaggggaggagtctgatccctg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107827514 ttttcgcagaagtggtcactccctaaatcccggcaaggaaggggaggagtctgatccctg 107827455
Query: 122 tccctccccttctccagtaaacttctgccgctctaggtttggcggcgggagttcgaggga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107827454 tccctccccttctccagtaaacttctgccgctctaggtttggcggcgggagttcgaggga 107827395
Query: 182 cctggagcaactacacaccccaagctttcctaatggtttcagttacaagatccgtgtttg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107827394 cctggagcaactacacaccccaagctttcctaatggtttcagttacaagatccgtgtttg 107827335
Query: 242 gagacctcccctcgggggcagggacggtggaaaagttccagctgcaatcagaccagctga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107827334 gagacctcccctcgggggcagggacggtggaaaagttccagctgcaatcagaccagctga 107827275
Query: 302 gagtggacatcatctcctggggctgcaccatcacggccctggaggtcaaagacaggcagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107827274 gagtggacatcatctcctggggctgcaccatcacggccctggaggtcaaagacaggcagg 107827215
Query: 362 gcagagcctcagacgtggtgcttggctttgctgaattgaaag 403
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107827214 gcagagcctcagacgtggtgcttggctttgctgaattgaaag 107827173
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Minus
Query: 557 aggtcctctggacccctcgggtgctgtcaaatggcatcgagttctcgagggtcagtccag 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107810397 aggtcctctggacccctcgggtgctgtcaaatggcatcgagttctcgagggtcagtccag 107810338
Query: 617 atggtgaggaaggctaccctggagagttaaaagtctgggtgacatacacgctggatggtg 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107810337 atggtgaggaaggctaccctggagagttaaaagtctgggtgacatacacgctggatggtg 107810278
Query: 677 gggagctcgtggtcaactatcgagcacaggccagtcagaccaccccagtcaatctgacca 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107810277 gggagctcgtggtcaactatcgagcacaggccagtcagaccaccccagtcaatctgacca 107810218
Query: 737 accactcttatttcaacctggcgggccagg 766
||||||||||||||||||||||||||||||
Sbjct: 107810217 accactcttatttcaacctggcgggccagg 107810188
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 989 gggtccatcatgctggaagcgggagggtcctggaagtgtacactacccagcctgggatcc 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107764382 gggtccatcatgctggaagcgggagggtcctggaagtgtacactacccagcctgggatcc 107764323
Query: 1049 agttttacacgggcaacttcctggatggcacgctgaagggcaaaactggagcagtctatc 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107764322 agttttacacgggcaacttcctggatggcacgctgaagggcaaaactggagcagtctatc 107764263
Query: 1109 ccaagcactctggtttctgccttgagacccagaactggcctaatgcagtcaatcag 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107764262 ccaagcactctggtttctgccttgagacccagaactggcctaatgcagtcaatcag 107764207
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 402 agagtacctccaaaaacatccctactttggagcagtggttggcagagtggcaaaccgaat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107817409 agagtacctccaaaaacatccctactttggagcagtggttggcagagtggcaaaccgaat 107817350
Query: 462 tgccaaaggaacattcacattggatgggaaggagtataagctggccatcaacaacgggcc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107817349 tgccaaaggaacattcacattggatgggaaggagtataagctggccatcaacaacgggcc 107817290
Query: 522 caacagcctgcatggaggagtcagaggatttgataaggt 560
|||||||||||||||||||||||||||||||||||||||
Sbjct: 107817289 caacagcctgcatggaggagtcagaggatttgataaggt 107817251
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 845 caggagaaattgctccagtgcaaggaactgcatttgatctgaggaagccagtggagcttg 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107766336 caggagaaattgctccagtgcaaggaactgcatttgatctgaggaagccagtggagcttg 107766277
Query: 905 gaaaacacctgcaggagttccacatcaatggctttgaccacaatttctgtctgaagagat 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107766276 gaaaacacctgcaggagttccacatcaatggctttgaccacaatttctgtctgaagagat 107766217
Query: 965 ctaaagaaaagcaattttgtgcacgg 990
||||||||||||||||||||||||||
Sbjct: 107766216 ctaaagaaaagcaattttgtgcacgg 107766191
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 763 cagggttccccaaatatatatgaccatgaagtcactatagaagctgatgcttttttgcct 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107802765 cagggttccccaaatatatatgaccatgaagtcactatagaagctgatgcttttttgcct 107802706
Query: 823 gtggatgaaaccctaatccctacagg 848
||||||||||||||||||||||||||
Sbjct: 107802705 gtggatgaaaccctaatccctacagg 107802680
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,801,223
Number of extensions: 188
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 9
Length of query: 1189
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1168
Effective length of database: 2,808,413,156
Effective search space: 3280226566208
Effective search space used: 3280226566208
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)