Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013216
         (1267 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002692107.1| PREDICTED: calcium/calmodulin-dependent prot...   595   e-170
Alignment   gi|NP_001070336.1| calcium/calmodulin-dependent protein kinase ...   539   e-153
Alignment   gi|NP_001070304.1| calcium/calmodulin-dependent protein kinase ...   483   e-136
Alignment   gi|XP_605252.2| PREDICTED: calcium/calmodulin-dependent protein...   474   e-134
Alignment   gi|NP_001069787.1| calcium/calmodulin-dependent protein kinase ...   457   e-129
Alignment   gi|NP_001069344.1| caM kinase-like vesicle-associated protein [...   292   4e-79
Alignment   gi|NP_001068881.1| serine/threonine-protein kinase H1 [Bos taur...   286   4e-77
Alignment   gi|XP_002691060.1| PREDICTED: calcium/calmodulin-dependent prot...   272   4e-73
Alignment   gi|XP_002694373.1| PREDICTED: doublecortin-like kinase 2 [Bos t...   247   1e-65
Alignment   gi|XP_616231.5| PREDICTED: doublecortin-like kinase 2 [Bos taur...   247   1e-65

>ref|XP_002692107.1| PREDICTED: calcium/calmodulin-dependent protein kinase ID-like [Bos
            taurus].
          Length = 379

 Score =  595 bits (1533), Expect = e-170
 Identities = 302/344 (87%), Positives = 304/344 (88%), Gaps = 17/344 (4%)
 Frame = +1

Query: 91   TGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRK--------------- 225
            +GAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRK               
Sbjct: 8    SGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKFEQNHFSSDGKCGNG 67

Query: 226  --IKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 399
              IKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY
Sbjct: 68   RRIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 127

Query: 400  YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 579
            YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL
Sbjct: 128  YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 187

Query: 580  AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 759
            AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK
Sbjct: 188  AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 247

Query: 760  DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 939
            DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT
Sbjct: 248  DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 307

Query: 940  AVVRHMRKLHXXXXXXXXXXXXXXXXXXXXQKDCRAPSTLCSFM 1071
            AVVRHMRKLH                    QKDC   STLCSF+
Sbjct: 308  AVVRHMRKLHLGSSLDSSNASVSSSLSLASQKDCLTSSTLCSFV 351


>ref|NP_001070336.1| calcium/calmodulin-dependent protein kinase type 1 [Bos taurus].
          Length = 370

 Score =  539 bits (1389), Expect = e-153
 Identities = 263/312 (84%), Positives = 287/312 (91%)
 Frame = +1

Query: 31  SWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEI 210
           SWK QAEDI+ I++F++ LGTGAFSEV+LAE+K T K+ A+KCI KKAL+GKE S+ENEI
Sbjct: 9   SWK-QAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKMVAIKCIAKKALEGKEGSMENEI 67

Query: 211 AVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLD 390
           AVL KIKH NIVAL+DIYES  HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLD
Sbjct: 68  AVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLD 127

Query: 391 AVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAP 570
           AV YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME    V+STACGTPGYVAP
Sbjct: 128 AVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPSSVLSTACGTPGYVAP 187

Query: 571 EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISD 750
           EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISD
Sbjct: 188 EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISD 247

Query: 751 SAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAF 930
           SAKDFIR+LMEKDP KR+TCEQA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAF
Sbjct: 248 SAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAF 307

Query: 931 NATAVVRHMRKL 966
           NATAVVRHMRKL
Sbjct: 308 NATAVVRHMRKL 319


>ref|NP_001070304.1| calcium/calmodulin-dependent protein kinase type 1G [Bos taurus].
          Length = 474

 Score =  483 bits (1244), Expect = e-136
 Identities = 238/323 (73%), Positives = 276/323 (85%)
 Frame = +1

Query: 1   LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
           + R+  +  SSWKKQ  +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+  
Sbjct: 1   MGRKEEDDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRVTGKLFALKCI-KKSPA 59

Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
            ++SS+ENEIAVL+KIKHENIV LEDIYES  H YLVMQLVSGGELFDRI+E+G YTEKD
Sbjct: 60  FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKD 119

Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
           AS +I+QVL AV YLH  GIVHRDLKPENLLY + +E SKIMI+DFGLSKME  G VMST
Sbjct: 120 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG-VMST 178

Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
           ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I +  YEF
Sbjct: 179 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 238

Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
           +SP+WDDIS+SAKDFI +L+EKDPN+RYTCE+A RHPWI G+TAL ++I+ SVS QI+KN
Sbjct: 239 ESPFWDDISESAKDFICHLLEKDPNERYTCEKALRHPWINGNTALHRDIYPSVSLQIQKN 298

Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
           FAKSKWRQAFNA AVV HMRKLH
Sbjct: 299 FAKSKWRQAFNAAAVVHHMRKLH 321


>ref|XP_605252.2| PREDICTED: calcium/calmodulin-dependent protein kinase ID-like,
            partial [Bos taurus].
          Length = 285

 Score =  474 bits (1219), Expect = e-134
 Identities = 233/257 (90%), Positives = 234/257 (91%)
 Frame = +1

Query: 301  VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK 480
            VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK
Sbjct: 1    VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK 60

Query: 481  IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 660
            IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP
Sbjct: 61   IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 120

Query: 661  FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA 840
            FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA
Sbjct: 121  FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA 180

Query: 841  GDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXX 1020
            GDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLH                 
Sbjct: 181  GDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSSSLS 240

Query: 1021 XXXQKDCRAPSTLCSFM 1071
               QKDC   STLCSF+
Sbjct: 241  LASQKDCLTSSTLCSFV 257


>ref|NP_001069787.1| calcium/calmodulin-dependent protein kinase type 1B [Bos taurus].
          Length = 342

 Score =  457 bits (1176), Expect = e-129
 Identities = 214/310 (69%), Positives = 269/310 (86%)
 Frame = +1

Query: 37  KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
           KKQ EDI  ++E +E LG+GAFSEVVLA+E+ +  L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5   KKQTEDISSVYEIREKLGSGAFSEVVLAQERGSSHLVALKCIPKKALRGKEALVENEIAV 64

Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
           LR++ H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65  LRRVSHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVAQVLGAV 124

Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
            YLH +GIVHRDLKPENLLY +  E+SKIM+SDFGLSK++  G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183

Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
           L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRANYEFDSPFWDDISESA 243

Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
           KDFIR+L+E+DP KR+TC+QA +H WI+GDTA  K+I  SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDTAFDKDILGSVSEQIQKNFARNHWKRAFNA 303

Query: 937 TAVVRHMRKL 966
           T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313


>ref|NP_001069344.1| caM kinase-like vesicle-associated protein [Bos taurus].
          Length = 504

 Score =  292 bits (748), Expect = 4e-79
 Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
 Frame = +1

Query: 43  QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
           Q  ++   ++  + + T  F E+  A++K TGKL   K   K+  +    + +NEI +L+
Sbjct: 16  QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75

Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
            +KH NI+ L D++ +    ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76  MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135

Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
           LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E    ++   CGTP Y+APEV+ 
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193

Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
           ++ Y + VDCW+IGVI YILL G PPFY+E        +D  LF +IL  +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253

Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
           DIS +AKD +  LME + ++R T E+A  H WI+G+ A  KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313

Query: 919 RQAFNATAVVRHMR 960
           ++A   T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327


>ref|NP_001068881.1| serine/threonine-protein kinase H1 [Bos taurus].
          Length = 424

 Score =  286 bits (731), Expect = 4e-77
 Identities = 138/281 (49%), Positives = 195/281 (69%), Gaps = 4/281 (1%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
           ++ K  +G G+FS VV  E +AT + +A+K I  K  +G+E   E+E+ VLR+++H NI+
Sbjct: 98  YDIKALIGRGSFSRVVRVEHRATRQPYAIKMIETKYREGREVC-ESELRVLRRVRHANII 156

Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
            L +++E+   +Y+VM+L +GGELFDRI+ KG +TE+DA+ +++ VLD V YLH +GI H
Sbjct: 157 QLVEVFETQERVYMVMELATGGELFDRIIAKGSFTERDATRVLQMVLDGVRYLHALGITH 216

Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGD--VMSTACGTPGYVAPEVLAQKPYSK 600
           RDLKPENLLYY    +SKI+I+DFGL+    KGD  +M T CGTP Y+APEVL +KPY+ 
Sbjct: 217 RDLKPENLLYYHPGTDSKIIITDFGLASARKKGDDCLMKTTCGTPEYIAPEVLVRKPYTN 276

Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
           +VD W++GVIAYILL G  PF D+N ++L+ QIL+ +Y +    W  +S+ AKDFI  L+
Sbjct: 277 SVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYSGEPWPSVSNLAKDFIDRLL 336

Query: 781 EKDPNKRYTCEQAARHPWIAGDTALS--KNIHESVSAQIRK 897
             DP  R T  QA RHPW+    A S  KN+H S+S  + K
Sbjct: 337 TVDPGARMTALQALRHPWVVSMAASSSMKNLHRSISQNLLK 377


>ref|XP_002691060.1| PREDICTED: calcium/calmodulin-dependent protein kinase IV-like [Bos
           taurus].
          Length = 463

 Score =  272 bits (696), Expect = 4e-73
 Identities = 143/311 (45%), Positives = 198/311 (63%), Gaps = 13/311 (4%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
           FE +  LG GA S V   ++K T K +A+K + K   K     +  EI VL ++ H NI+
Sbjct: 46  FEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK---KIVRTEIGVLLRLSHPNII 102

Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
            L++I+E+P  + LV++LV+GGELFDRIVEKG+Y+E+DA+  ++Q+L+AV YLH  GIVH
Sbjct: 103 KLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVH 162

Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAV 606
           RDLKPENLLY +   ++ + I+DFGLSK+     +M T CGTPGY APE+L    Y   V
Sbjct: 163 RDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEV 222

Query: 607 DCWSIGVIAYILLCGYPPFYDE-NDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLME 783
           D WS+G+I YILLCG+ PFYDE  D  +F +IL  EY F SP+WD++S +AKD +R L+ 
Sbjct: 223 DMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIV 282

Query: 784 KDPNKRYTCEQAARHPWIAG--------DTALSK----NIHESVSAQIRKNFAKSKWRQA 927
            DP KR T  QA +HPW+ G        DTA  K    N    + A ++   A S+   A
Sbjct: 283 LDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSA 342

Query: 928 FNATAVVRHMR 960
            ++ + V+  R
Sbjct: 343 SSSHSGVQEGR 353


>ref|XP_002694373.1| PREDICTED: doublecortin-like kinase 2 [Bos taurus].
          Length = 972

 Score =  247 bits (631), Expect = 1e-65
 Identities = 125/297 (42%), Positives = 188/297 (63%), Gaps = 4/297 (1%)
 Frame = +1

Query: 67   FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
            ++  + +G G F+ V    +++TGK FA+K I K    GKE  IENE+++LR++KH NI+
Sbjct: 392  YKIGKVIGDGNFAVVKECMDRSTGKEFALKIIDKAKCCGKEHLIENEVSILRRVKHPNII 451

Query: 247  ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
             L +  E+   L+LVM+LV GG+LFD I     YTE+D S ++  + +A+ YLH + IVH
Sbjct: 452  MLIEEMETATELFLVMELVKGGDLFDAITSSTKYTERDGSAMVYNLANALRYLHALNIVH 511

Query: 427  RDLKPENLLYYSQDEESK-IMISDFGLSK-MEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
            RD+KPENLL     + +K + + DFGL+  +EG    + T CGTP YVAPE++A+  Y  
Sbjct: 512  RDIKPENLLVCEYPDGTKSLKLGDFGLATVVEGP---LYTVCGTPTYVAPEIIAETGYGL 568

Query: 601  AVDCWSIGVIAYILLCGYPPFYDEND--SKLFEQILKAEYEFDSPYWDDISDSAKDFIRN 774
             VD W+ GVI YILLCG+PPF  EN+    LF+QIL  + EF +PYWD+I+DSAK+ I  
Sbjct: 569  KVDVWAAGVITYILLCGFPPFRSENNLQEDLFDQILAGKLEFPAPYWDNITDSAKELISQ 628

Query: 775  LMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAV 945
            +++ +   R T  Q   HPW++ D +   N+   V+ +++++F  +  +Q    T V
Sbjct: 629  MLQVNVEARCTAGQILSHPWVSDDASQENNMQAEVTGKLKQHFNNALPKQNSTTTGV 685


>ref|XP_616231.5| PREDICTED: doublecortin-like kinase 2 [Bos taurus].
          Length = 773

 Score =  247 bits (631), Expect = 1e-65
 Identities = 125/297 (42%), Positives = 188/297 (63%), Gaps = 4/297 (1%)
 Frame = +1

Query: 67   FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
            ++  + +G G F+ V    +++TGK FA+K I K    GKE  IENE+++LR++KH NI+
Sbjct: 391  YKIGKVIGDGNFAVVKECMDRSTGKEFALKIIDKAKCCGKEHLIENEVSILRRVKHPNII 450

Query: 247  ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
             L +  E+   L+LVM+LV GG+LFD I     YTE+D S ++  + +A+ YLH + IVH
Sbjct: 451  MLIEEMETATELFLVMELVKGGDLFDAITSSTKYTERDGSAMVYNLANALRYLHALNIVH 510

Query: 427  RDLKPENLLYYSQDEESK-IMISDFGLSK-MEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
            RD+KPENLL     + +K + + DFGL+  +EG    + T CGTP YVAPE++A+  Y  
Sbjct: 511  RDIKPENLLVCEYPDGTKSLKLGDFGLATVVEGP---LYTVCGTPTYVAPEIIAETGYGL 567

Query: 601  AVDCWSIGVIAYILLCGYPPFYDEND--SKLFEQILKAEYEFDSPYWDDISDSAKDFIRN 774
             VD W+ GVI YILLCG+PPF  EN+    LF+QIL  + EF +PYWD+I+DSAK+ I  
Sbjct: 568  KVDVWAAGVITYILLCGFPPFRSENNLQEDLFDQILAGKLEFPAPYWDNITDSAKELISQ 627

Query: 775  LMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAV 945
            +++ +   R T  Q   HPW++ D +   N+   V+ +++++F  +  +Q    T V
Sbjct: 628  MLQVNVEARCTAGQILSHPWVSDDASQENNMQAEVTGKLKQHFNNALPKQNSTTTGV 684


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,270,580
Number of extensions: 1284937
Number of successful extensions: 6770
Number of sequences better than 1.0e-05: 603
Number of HSP's gapped: 5505
Number of HSP's successfully gapped: 632
Length of query: 422
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,207,134
Effective search space: 4503661478
Effective search space used: 4503661478
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013216

Animal-Genome cDNA 20110601C-013216


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013216
         (1267 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_541780.2| PREDICTED: similar to calcium/calmodulin-depend...   541   e-154
Alignment   gi|XP_547392.2| PREDICTED: similar to calcium/calmodulin-depend...   483   e-136
Alignment   gi|XP_849488.1| PREDICTED: similar to calcium/calmodulin-depend...   473   e-133
Alignment   gi|XP_549361.2| PREDICTED: similar to Calcium/calmodulin-depend...   373   e-103
Alignment   gi|XP_861610.1| PREDICTED: similar to CaM kinase-like vesicle-a...   292   4e-79
Alignment   gi|XP_850476.1| PREDICTED: similar to CaM kinase-like vesicle-a...   292   4e-79
Alignment   gi|XP_858159.1| PREDICTED: similar to Serine/threonine-protein ...   253   4e-67
Alignment   gi|XP_858119.1| PREDICTED: similar to Serine/threonine-protein ...   253   4e-67
Alignment   gi|XP_858077.1| PREDICTED: similar to Serine/threonine-protein ...   253   4e-67
Alignment   gi|XP_858032.1| PREDICTED: similar to Serine/threonine-protein ...   253   4e-67

>ref|XP_541780.2| PREDICTED: similar to calcium/calmodulin-dependent protein kinase I
           [Canis familiaris].
          Length = 370

 Score =  541 bits (1393), Expect = e-154
 Identities = 264/312 (84%), Positives = 287/312 (91%)
 Frame = +1

Query: 31  SWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEI 210
           SWK Q EDI+ I++F++ LGTGAFSEV+LAE+K T KL A+KCI KKAL+GKE S+ENEI
Sbjct: 9   SWK-QVEDIRDIYDFRDVLGTGAFSEVILAEDKRTHKLVAIKCIAKKALEGKEGSMENEI 67

Query: 211 AVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLD 390
           AVL KIKH NIVAL+DIYES  HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLD
Sbjct: 68  AVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLD 127

Query: 391 AVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAP 570
           AV YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME  G V+STACGTPGYVAP
Sbjct: 128 AVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAP 187

Query: 571 EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISD 750
           EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISD
Sbjct: 188 EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISD 247

Query: 751 SAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAF 930
           SAKDFIR+LMEKDP KR+TCEQA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAF
Sbjct: 248 SAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAF 307

Query: 931 NATAVVRHMRKL 966
           NATAVVRHMRKL
Sbjct: 308 NATAVVRHMRKL 319


>ref|XP_547392.2| PREDICTED: similar to calcium/calmodulin-dependent protein kinase
           IG [Canis familiaris].
          Length = 509

 Score =  483 bits (1244), Expect = e-136
 Identities = 238/323 (73%), Positives = 276/323 (85%)
 Frame = +1

Query: 1   LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
           + R+  +  SSWKKQ  +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+  
Sbjct: 34  MGRKEEDDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRVTGKLFALKCI-KKSPA 92

Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
            ++SS+ENEIAVL+KIKHENIV LEDIYES  H YLVMQLVSGGELFDRI+E+G YTEKD
Sbjct: 93  FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKD 152

Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
           AS +I+QVL AV YLH  GIVHRDLKPENLLY + +E SKIMI+DFGLSKME  G VMST
Sbjct: 153 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQSG-VMST 211

Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
           ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I +  YEF
Sbjct: 212 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 271

Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
           +SP+WDDIS+SAKDFI +L+EKDPN+RYTCE+A RHPWI G+TAL ++I+ SVS QI+KN
Sbjct: 272 ESPFWDDISESAKDFICHLLEKDPNERYTCEKALRHPWIDGNTALHRDIYPSVSLQIQKN 331

Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
           FAKSKWRQAFNA AVV HMRKLH
Sbjct: 332 FAKSKWRQAFNAAAVVHHMRKLH 354


>ref|XP_849488.1| PREDICTED: similar to calcium/calmodulin-dependent protein kinase ID
            isoform 2 [Canis familiaris].
          Length = 412

 Score =  473 bits (1218), Expect = e-133
 Identities = 232/257 (90%), Positives = 234/257 (91%)
 Frame = +1

Query: 301  VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK 480
            VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK
Sbjct: 128  VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK 187

Query: 481  IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 660
            IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP
Sbjct: 188  IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 247

Query: 661  FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA 840
            FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA
Sbjct: 248  FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA 307

Query: 841  GDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXX 1020
            GDTAL+KNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLH                 
Sbjct: 308  GDTALNKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSSSLS 367

Query: 1021 XXXQKDCRAPSTLCSFM 1071
               QKDC  PSTLCS +
Sbjct: 368  LASQKDCLVPSTLCSLV 384


>ref|XP_549361.2| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase
           type 1B (CaM kinase IB) (CaM kinase I beta) (CaMKI-beta)
           (CaM-KI beta) (Pregnancy up-regulated non-ubiquitously
           expressed CaM kinase homolog) [Canis familiaris].
          Length = 278

 Score =  373 bits (958), Expect = e-103
 Identities = 173/248 (69%), Positives = 217/248 (87%)
 Frame = +1

Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
           ++ H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV Y
Sbjct: 2   RVSHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAVSY 61

Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
           LH +GIVHRDLKPENLLY +  E+SKIM+SDFGLSK++  G+++ TACGTPGYVAPE+L 
Sbjct: 62  LHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPELLE 120

Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKD 762
           QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SAKD
Sbjct: 121 QKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESAKD 180

Query: 763 FIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATA 942
           FIR+L+E+DP KR+TC+QA +H WI+GD AL K+I  SVS QI+KNFA++ W++AFNAT+
Sbjct: 181 FIRHLLERDPQKRFTCQQALQHLWISGDAALDKDILGSVSEQIQKNFARTHWKRAFNATS 240

Query: 943 VVRHMRKL 966
            +RH+RKL
Sbjct: 241 FLRHIRKL 248


>ref|XP_861610.1| PREDICTED: similar to CaM kinase-like vesicle-associated isoform 6
           [Canis familiaris].
          Length = 470

 Score =  292 bits (748), Expect = 4e-79
 Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
 Frame = +1

Query: 43  QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
           Q  ++   ++  + + T  F E+  A++K TGKL   K   K+  +    + +NEI +L+
Sbjct: 16  QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75

Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
            +KH NI+ L D++ +    ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76  MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135

Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
           LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E    ++   CGTP Y+APEV+ 
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193

Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
           ++ Y + VDCW+IGVI YILL G PPFY+E        +D  LF +IL  +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253

Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
           DIS +AKD +  LME + ++R T E+A  H WI+G+ A  KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313

Query: 919 RQAFNATAVVRHMR 960
           ++A   T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327


>ref|XP_850476.1| PREDICTED: similar to CaM kinase-like vesicle-associated isoform 2
           [Canis familiaris].
          Length = 507

 Score =  292 bits (748), Expect = 4e-79
 Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
 Frame = +1

Query: 43  QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
           Q  ++   ++  + + T  F E+  A++K TGKL   K   K+  +    + +NEI +L+
Sbjct: 16  QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75

Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
            +KH NI+ L D++ +    ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76  MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135

Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
           LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E    ++   CGTP Y+APEV+ 
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193

Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
           ++ Y + VDCW+IGVI YILL G PPFY+E        +D  LF +IL  +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253

Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
           DIS +AKD +  LME + ++R T E+A  H WI+G+ A  KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313

Query: 919 RQAFNATAVVRHMR 960
           ++A   T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327


>ref|XP_858159.1| PREDICTED: similar to Serine/threonine-protein kinase DCAMKL1
            (Doublecortin-like and CAM kinase-like 1) isoform 7
            [Canis familiaris].
          Length = 741

 Score =  253 bits (645), Expect = 4e-67
 Identities = 128/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
 Frame = +1

Query: 55   IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
            I + ++   T+G G F+ V    E++T + +A+K I K   +GKE  I+NE+++LR++KH
Sbjct: 387  ITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKH 446

Query: 235  ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
             NIV L +  + P  LYLVM+LV GG+LFD I     YTE+DAS ++  +  A+ YLH +
Sbjct: 447  PNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSL 506

Query: 415  GIVHRDLKPENLLYYS-QDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKP 591
             IVHRD+KPENLL Y  QD    + + DFGL+ +      + T CGTP YVAPE++A+  
Sbjct: 507  NIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATI--VDGPLYTVCGTPTYVAPEIIAETG 564

Query: 592  YSKAVDCWSIGVIAYILLCGYPPFYDENDSK--LFEQILKAEYEFDSPYWDDISDSAKDF 765
            Y   VD W+ GVI YILLCG+PPF    D +  LF+QIL  + +F SPYWD++SDSAK+ 
Sbjct: 565  YGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKEL 624

Query: 766  IRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHE-SVSAQIRKNF 903
            I  ++  D ++R++  Q   HPW+  D  L +N H+ SV+ +I+K+F
Sbjct: 625  ITMMLLVDVDQRFSAVQVLEHPWV-NDDGLPENEHQLSVAGKIKKHF 670


>ref|XP_858119.1| PREDICTED: similar to Serine/threonine-protein kinase DCAMKL1
            (Doublecortin-like and CAM kinase-like 1) isoform 6
            [Canis familiaris].
          Length = 750

 Score =  253 bits (645), Expect = 4e-67
 Identities = 128/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
 Frame = +1

Query: 55   IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
            I + ++   T+G G F+ V    E++T + +A+K I K   +GKE  I+NE+++LR++KH
Sbjct: 396  ITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKH 455

Query: 235  ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
             NIV L +  + P  LYLVM+LV GG+LFD I     YTE+DAS ++  +  A+ YLH +
Sbjct: 456  PNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSL 515

Query: 415  GIVHRDLKPENLLYYS-QDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKP 591
             IVHRD+KPENLL Y  QD    + + DFGL+ +      + T CGTP YVAPE++A+  
Sbjct: 516  NIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATI--VDGPLYTVCGTPTYVAPEIIAETG 573

Query: 592  YSKAVDCWSIGVIAYILLCGYPPFYDENDSK--LFEQILKAEYEFDSPYWDDISDSAKDF 765
            Y   VD W+ GVI YILLCG+PPF    D +  LF+QIL  + +F SPYWD++SDSAK+ 
Sbjct: 574  YGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKEL 633

Query: 766  IRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHE-SVSAQIRKNF 903
            I  ++  D ++R++  Q   HPW+  D  L +N H+ SV+ +I+K+F
Sbjct: 634  ITMMLLVDVDQRFSAVQVLEHPWV-NDDGLPENEHQLSVAGKIKKHF 679


>ref|XP_858077.1| PREDICTED: similar to Serine/threonine-protein kinase DCAMKL1
            (Doublecortin-like and CAM kinase-like 1) isoform 5
            [Canis familiaris].
          Length = 741

 Score =  253 bits (645), Expect = 4e-67
 Identities = 128/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
 Frame = +1

Query: 55   IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
            I + ++   T+G G F+ V    E++T + +A+K I K   +GKE  I+NE+++LR++KH
Sbjct: 387  ITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKH 446

Query: 235  ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
             NIV L +  + P  LYLVM+LV GG+LFD I     YTE+DAS ++  +  A+ YLH +
Sbjct: 447  PNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSL 506

Query: 415  GIVHRDLKPENLLYYS-QDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKP 591
             IVHRD+KPENLL Y  QD    + + DFGL+ +      + T CGTP YVAPE++A+  
Sbjct: 507  NIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATI--VDGPLYTVCGTPTYVAPEIIAETG 564

Query: 592  YSKAVDCWSIGVIAYILLCGYPPFYDENDSK--LFEQILKAEYEFDSPYWDDISDSAKDF 765
            Y   VD W+ GVI YILLCG+PPF    D +  LF+QIL  + +F SPYWD++SDSAK+ 
Sbjct: 565  YGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKEL 624

Query: 766  IRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHE-SVSAQIRKNF 903
            I  ++  D ++R++  Q   HPW+  D  L +N H+ SV+ +I+K+F
Sbjct: 625  ITMMLLVDVDQRFSAVQVLEHPWV-NDDGLPENEHQLSVAGKIKKHF 670


>ref|XP_858032.1| PREDICTED: similar to Serine/threonine-protein kinase DCAMKL1
            (Doublecortin-like and CAM kinase-like 1) isoform 4
            [Canis familiaris].
          Length = 740

 Score =  253 bits (645), Expect = 4e-67
 Identities = 128/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
 Frame = +1

Query: 55   IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
            I + ++   T+G G F+ V    E++T + +A+K I K   +GKE  I+NE+++LR++KH
Sbjct: 386  ITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKH 445

Query: 235  ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
             NIV L +  + P  LYLVM+LV GG+LFD I     YTE+DAS ++  +  A+ YLH +
Sbjct: 446  PNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSL 505

Query: 415  GIVHRDLKPENLLYYS-QDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKP 591
             IVHRD+KPENLL Y  QD    + + DFGL+ +      + T CGTP YVAPE++A+  
Sbjct: 506  NIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATI--VDGPLYTVCGTPTYVAPEIIAETG 563

Query: 592  YSKAVDCWSIGVIAYILLCGYPPFYDENDSK--LFEQILKAEYEFDSPYWDDISDSAKDF 765
            Y   VD W+ GVI YILLCG+PPF    D +  LF+QIL  + +F SPYWD++SDSAK+ 
Sbjct: 564  YGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKEL 623

Query: 766  IRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHE-SVSAQIRKNF 903
            I  ++  D ++R++  Q   HPW+  D  L +N H+ SV+ +I+K+F
Sbjct: 624  ITMMLLVDVDQRFSAVQVLEHPWV-NDDGLPENEHQLSVAGKIKKHF 669


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,274,250
Number of extensions: 1327927
Number of successful extensions: 7990
Number of sequences better than 1.0e-05: 896
Number of HSP's gapped: 6233
Number of HSP's successfully gapped: 929
Length of query: 422
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 317
Effective length of database: 15,374,224
Effective search space: 4873629008
Effective search space used: 4873629008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013216
         (1267 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001177124.1| calcium/calmodulin-dependent protein kinase ...   540   e-154
Alignment   gi|NP_001230864.1| calcium/calmodulin-dependent protein kinase ...   488   e-138
Alignment   gi|NP_001230863.1| calcium/calmodulin-dependent protein kinase ...   482   e-136
Alignment   gi|XP_003360887.1| PREDICTED: calcium/calmodulin-dependent prot...   468   e-132
Alignment   gi|NP_001182295.1| calcium/calmodulin-dependent protein kinase ...   451   e-127
Alignment   gi|XP_003358517.1| PREDICTED: caM kinase-like vesicle-associate...   292   2e-79
Alignment   gi|XP_003123873.2| PREDICTED: calcium/calmodulin-dependent prot...   266   2e-71
Alignment   gi|XP_003354404.1| PREDICTED: calcium/calmodulin-dependent prot...   244   6e-65
Alignment   gi|NP_999358.1| calcium/calmodulin-dependent protein kinase typ...   237   1e-62
Alignment   gi|NP_999546.1| calcium/calmodulin-dependent protein kinase typ...   237   1e-62

>ref|NP_001177124.1| calcium/calmodulin-dependent protein kinase type 1 [Sus scrofa].
          Length = 370

 Score =  540 bits (1391), Expect = e-154
 Identities = 262/309 (84%), Positives = 286/309 (92%)
 Frame = +1

Query: 40  KQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVL 219
           KQAEDI+ I++F++ LGTGAFSEV+LAE+K T KL A+KCI KKAL+GKE S+ENEIAVL
Sbjct: 11  KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 70

Query: 220 RKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 399
            KIKH NIVAL+DIYES  HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLDAV 
Sbjct: 71  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVK 130

Query: 400 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 579
           YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME  G V+STACGTPGYVAPEVL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVL 190

Query: 580 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 759
           AQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISDSAK
Sbjct: 191 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAK 250

Query: 760 DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 939
           DFIR+LMEKDP KR+TC+QA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAFNAT
Sbjct: 251 DFIRHLMEKDPEKRFTCDQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNAT 310

Query: 940 AVVRHMRKL 966
           AVVRHMRKL
Sbjct: 311 AVVRHMRKL 319


>ref|NP_001230864.1| calcium/calmodulin-dependent protein kinase ID [Sus scrofa].
          Length = 288

 Score =  488 bits (1256), Expect = e-138
 Identities = 240/260 (92%), Positives = 240/260 (92%)
 Frame = +1

Query: 292  MQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDE 471
            MQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDE
Sbjct: 1    MQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDE 60

Query: 472  ESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 651
            ESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG
Sbjct: 61   ESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 120

Query: 652  YPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHP 831
            YPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHP
Sbjct: 121  YPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHP 180

Query: 832  WIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXX 1011
            WIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLH              
Sbjct: 181  WIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSG 240

Query: 1012 XXXXXXQKDCRAPSTLCSFM 1071
                  QKDCRAPSTLCSFM
Sbjct: 241  SLSLASQKDCRAPSTLCSFM 260


>ref|NP_001230863.1| calcium/calmodulin-dependent protein kinase IG [Sus scrofa].
          Length = 475

 Score =  482 bits (1241), Expect = e-136
 Identities = 238/323 (73%), Positives = 275/323 (85%)
 Frame = +1

Query: 1   LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
           + R+  E  SSWKKQ  +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+  
Sbjct: 1   MGRKEDEDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRVTGKLFALKCI-KKSPA 59

Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
            ++SS+ENEIAVL+KIKHENIV LEDIYES  H YLVMQLVSGGELFDRI+E+G YTE+D
Sbjct: 60  FRDSSLENEIAVLKKIKHENIVTLEDIYESSTHYYLVMQLVSGGELFDRILERGVYTERD 119

Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
           AS +IRQVL AV YLH  GIVHRDLKPENLLY + +E SKIMI+DFGLSKME  G VMST
Sbjct: 120 ASLVIRQVLAAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQSG-VMST 178

Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
           ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I +  YEF
Sbjct: 179 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 238

Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
           +SP+WDDIS+SAKDFI +L+EKDP +RYTCE+A RHPWI G+TAL ++I+ SVS QI+KN
Sbjct: 239 ESPFWDDISESAKDFICHLLEKDPKERYTCEKALRHPWINGNTALHRDIYPSVSLQIQKN 298

Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
           FAKSKWRQAFNA AVV HMRKLH
Sbjct: 299 FAKSKWRQAFNAAAVVHHMRKLH 321


>ref|XP_003360887.1| PREDICTED: calcium/calmodulin-dependent protein kinase type 1D-like
            [Sus scrofa].
          Length = 421

 Score =  468 bits (1203), Expect = e-132
 Identities = 230/267 (86%), Positives = 238/267 (89%)
 Frame = +1

Query: 271  PNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENL 450
            P+H  ++M++VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENL
Sbjct: 3    PSH-NMIMRIVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENL 61

Query: 451  LYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVI 630
            LYYSQDEESKIMISDFGLSKME  G + +  CGT G+VAPEVLAQKPYSKAVDCWSIGVI
Sbjct: 62   LYYSQDEESKIMISDFGLSKMEDPGSIPAGVCGTSGWVAPEVLAQKPYSKAVDCWSIGVI 121

Query: 631  AYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTC 810
            AYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTC
Sbjct: 122  AYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTC 181

Query: 811  EQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHXXXXXXX 990
            EQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLH       
Sbjct: 182  EQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHLGSSLDS 241

Query: 991  XXXXXXXXXXXXXQKDCRAPSTLCSFM 1071
                         QKDCRAPSTLCSFM
Sbjct: 242  SNASVSGSLSLASQKDCRAPSTLCSFM 268


>ref|NP_001182295.1| calcium/calmodulin-dependent protein kinase type 1B [Sus scrofa].
          Length = 343

 Score =  451 bits (1159), Expect = e-127
 Identities = 211/310 (68%), Positives = 267/310 (86%)
 Frame = +1

Query: 37  KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
           K+Q EDI  ++E +E LG+GAFSEVVLA+E+ +  L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5   KEQTEDISSVYEIREKLGSGAFSEVVLAQERGSSHLVALKCIPKKALRGKEALVENEIAV 64

Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
           LR++ H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65  LRRVSHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 124

Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
            YLH +GIVHRDLKPENLLY +  E+SKIM+SDFGLSK++  G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183

Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
           L QKPY KAVD W++ VI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALXVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 243

Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
           KDFIR+L+E+DP KR+TC+QA +H WI+GD A  K+I  SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDAAFDKDILGSVSEQIQKNFARNHWKRAFNA 303

Query: 937 TAVVRHMRKL 966
           T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313


>ref|XP_003358517.1| PREDICTED: caM kinase-like vesicle-associated protein [Sus scrofa].
          Length = 503

 Score =  292 bits (748), Expect = 2e-79
 Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
 Frame = +1

Query: 43  QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
           Q  ++   ++  + + T  F E+  A++K TGKL   K   K+  +    + +NEI +L+
Sbjct: 16  QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75

Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
            +KH NI+ L D++ +    ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76  MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135

Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
           LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E    ++   CGTP Y+APEV+ 
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193

Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
           ++ Y + VDCW+IGVI YILL G PPFY+E        +D  LF +IL  +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253

Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
           DIS +AKD +  LME + ++R T E+A  H WI+G+ A  KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313

Query: 919 RQAFNATAVVRHMR 960
           ++A   T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327


>ref|XP_003123873.2| PREDICTED: calcium/calmodulin-dependent protein kinase type IV [Sus
            scrofa].
          Length = 551

 Score =  266 bits (679), Expect = 2e-71
 Identities = 138/303 (45%), Positives = 193/303 (63%), Gaps = 13/303 (4%)
 Frame = +1

Query: 94   GAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIVALEDIYESP 273
            GA S V   ++K T K +A+K + K   K     +  EI VL ++ H NI+ L++I+E+P
Sbjct: 133  GATSIVYRCKQKGTQKPYALKVLKKTVDK---KIVRTEIGVLLRLSHPNIIKLKEIFETP 189

Query: 274  NHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLL 453
              + LV++LV+GGELFDRIVEKG+Y+E+DA+  ++Q+L+AV YLH  GIVHRDLKPENLL
Sbjct: 190  TEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLL 249

Query: 454  YYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIA 633
            Y +   ++ + I+DFGLSK+     +M T CGTPGY APE+L    Y   VD WS+G+I 
Sbjct: 250  YATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIIT 309

Query: 634  YILLCGYPPFYDE-NDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTC 810
            YILLCG+ PFYDE  D  +F +IL  EY F SP+WD++S +AKD +R L+  DP KR T 
Sbjct: 310  YILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTT 369

Query: 811  EQAARHPWIAG--------DTALSK----NIHESVSAQIRKNFAKSKWRQAFNATAVVRH 954
             QA +HPW+ G        DTA  K    N    + A ++   A S+   A ++   ++ 
Sbjct: 370  FQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSASSSHGSIQE 429

Query: 955  MRK 963
             +K
Sbjct: 430  SQK 432


>ref|XP_003354404.1| PREDICTED: calcium/calmodulin-dependent protein kinase type II
           subunit alpha-like [Sus scrofa].
          Length = 478

 Score =  244 bits (624), Expect = 6e-65
 Identities = 125/294 (42%), Positives = 183/294 (62%), Gaps = 3/294 (1%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIENEIAVLRKIKHENI 243
           ++  E LG GAFS V    +   G+ +A K I  K L  ++   +E E  + R +KH NI
Sbjct: 13  YQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 72

Query: 244 VALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIV 423
           V L D      H YL+  LV+GGELF+ IV + +Y+E DAS  I+Q+L+AV + H+MG+V
Sbjct: 73  VRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVV 132

Query: 424 HRDLKPENLLYYSQDEESKIMISDFGLS-KMEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
           HRDLKPENLL  S+ + + + ++DFGL+ ++EG+        GTPGY++PEVL + PY K
Sbjct: 133 HRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGK 192

Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
            VD W+ GVI YILL GYPPF+DE+  +L++QI    Y+F SP WD ++  AKD I  ++
Sbjct: 193 PVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKML 252

Query: 781 EKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNF-AKSKWRQAFNAT 939
             +P+KR T  +A +HPWI+  + ++  +H   +    K F A+ K + A   T
Sbjct: 253 TINPSKRITAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGAILTT 306


>ref|NP_999358.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
           [Sus scrofa].
          Length = 539

 Score =  237 bits (604), Expect = 1e-62
 Identities = 123/297 (41%), Positives = 184/297 (61%), Gaps = 3/297 (1%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIENEIAVLRKIKHENI 243
           ++  E LG GAFS V    +K + + +A K I  K L  ++   +E E  + R +KH NI
Sbjct: 14  YQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 73

Query: 244 VALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIV 423
           V L D        YLV  LV+GGELF+ IV + +Y+E DAS  I Q+L++V ++H+  IV
Sbjct: 74  VRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIV 133

Query: 424 HRDLKPENLLYYSQDEESKIMISDFGLS-KMEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
           HRDLKPENLL  S+ + + + ++DFGL+ +++G+        GTPGY++PEVL + PY K
Sbjct: 134 HRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGK 193

Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
            VD W+ GVI YILL GYPPF+DE+  KL++QI    Y+F SP WD ++  AK+ I  ++
Sbjct: 194 PVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQML 253

Query: 781 EKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQ-IRKNFAKSKWRQAFNATAVV 948
             +P KR T +QA +HPW+   + ++  +H   + + +RK  A+ K + A   T +V
Sbjct: 254 TINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKGAILTTMLV 310


>ref|NP_999546.1| calcium/calmodulin-dependent protein kinase type II subunit delta
           [Sus scrofa].
          Length = 499

 Score =  237 bits (604), Expect = 1e-62
 Identities = 124/294 (42%), Positives = 178/294 (60%), Gaps = 3/294 (1%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIENEIAVLRKIKHENI 243
           ++  E LG GAFS V    +  TG+ +A K I  K L  ++   +E E  + R +KH NI
Sbjct: 14  YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 73

Query: 244 VALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIV 423
           V L D        YLV  LV+GGELF+ IV + +Y+E DAS  I+Q+L++V + H  GIV
Sbjct: 74  VRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIV 133

Query: 424 HRDLKPENLLYYSQDEESKIMISDFGLS-KMEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
           HRDLKPENLL  S+ + + + ++DFGL+ +++G         GTPGY++PEVL + PY K
Sbjct: 134 HRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGK 193

Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
            VD W+ GVI YILL GYPPF+DE+  +L++QI    Y+F SP WD ++  AKD I  ++
Sbjct: 194 PVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKML 253

Query: 781 EKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNF-AKSKWRQAFNAT 939
             +P KR T  +A +HPWI   + ++  +H   +    K F A+ K + A   T
Sbjct: 254 TINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKLKGAILTT 307


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,416,155
Number of extensions: 822375
Number of successful extensions: 4395
Number of sequences better than 1.0e-05: 425
Number of HSP's gapped: 3592
Number of HSP's successfully gapped: 444
Length of query: 422
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 320
Effective length of database: 8,804,438
Effective search space: 2817420160
Effective search space used: 2817420160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013216
         (1267 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_796317.2| calcium/calmodulin-dependent protein kinase typ...   665   0.0  
Alignment   gi|NP_598687.1| calcium/calmodulin-dependent protein kinase typ...   541   e-154
Alignment   gi|NP_659066.1| calcium/calmodulin-dependent protein kinase typ...   483   e-136
Alignment   gi|NP_036170.1| calcium/calmodulin-dependent protein kinase typ...   453   e-127
Alignment   gi|NP_001186281.1| calcium/calmodulin-dependent protein kinase ...   453   e-127
Alignment   gi|NP_001186280.1| calcium/calmodulin-dependent protein kinase ...   453   e-127
Alignment   gi|NP_663596.1| caM kinase-like vesicle-associated protein [Mus...   292   3e-79
Alignment   gi|NP_775608.1| serine/threonine-protein kinase H1 [Mus musculu...   284   9e-77
Alignment   gi|NP_033923.2| calcium/calmodulin-dependent protein kinase typ...   271   8e-73
Alignment   gi|XP_003086850.1| PREDICTED: calcium/calmodulin-dependent prot...   254   1e-67

>ref|NP_796317.2| calcium/calmodulin-dependent protein kinase type 1D [Mus musculus].
          Length = 385

 Score =  665 bits (1717), Expect = 0.0
 Identities = 332/357 (92%), Positives = 335/357 (93%)
 Frame = +1

Query: 1    LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
            +ARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK
Sbjct: 1    MARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 60

Query: 181  GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
            GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD
Sbjct: 61   GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 120

Query: 361  ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
            ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST
Sbjct: 121  ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 180

Query: 541  ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
            ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF
Sbjct: 181  ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 240

Query: 721  DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
            DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN
Sbjct: 241  DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 300

Query: 901  FAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXXXXXQKDCRAPSTLCSFM 1071
            FAKSKWRQAFNATAVVRHMR+L                     QKDC APSTLCSF+
Sbjct: 301  FAKSKWRQAFNATAVVRHMRRLQLGSSLDSSNASVSSNLSLASQKDCLAPSTLCSFL 357


>ref|NP_598687.1| calcium/calmodulin-dependent protein kinase type 1 [Mus musculus].
          Length = 374

 Score =  541 bits (1394), Expect = e-154
 Identities = 263/309 (85%), Positives = 286/309 (92%)
 Frame = +1

Query: 40  KQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVL 219
           KQAEDI+ I++F++ LGTGAFSEV+LAE+K T KL A+KCI KKAL+GKE S+ENEIAVL
Sbjct: 11  KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 70

Query: 220 RKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 399
            KIKH NIVAL+DIYES  HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLDAV 
Sbjct: 71  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVK 130

Query: 400 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 579
           YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME  G V+STACGTPGYVAPEVL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVL 190

Query: 580 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 759
           AQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISDSAK
Sbjct: 191 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAK 250

Query: 760 DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 939
           DFIR+LMEKDP KR+TCEQA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAFNAT
Sbjct: 251 DFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNAT 310

Query: 940 AVVRHMRKL 966
           AVVRHMRKL
Sbjct: 311 AVVRHMRKL 319


>ref|NP_659066.1| calcium/calmodulin-dependent protein kinase type 1G [Mus musculus].
          Length = 477

 Score =  483 bits (1244), Expect = e-136
 Identities = 238/323 (73%), Positives = 276/323 (85%)
 Frame = +1

Query: 1   LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
           + R+  E  SSWKKQ  +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+  
Sbjct: 1   MGRKEEEDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRVTGKLFALKCI-KKSPA 59

Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
            ++SS+ENEIAVL++IKHENIV LEDIYES  H YLVMQLVSGGELFDRI+E+G YTEKD
Sbjct: 60  FRDSSLENEIAVLKRIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKD 119

Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
           AS +I+QVL AV YLH  GIVHRDLKPENLLY + +E SKIMI+DFGLSKME  G VMST
Sbjct: 120 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG-VMST 178

Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
           ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I +  YEF
Sbjct: 179 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 238

Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
           +SP+WDDIS+SAKDFI +L+EKDPN+RYTCE+A RHPWI G+TAL ++I+ SVS QI+KN
Sbjct: 239 ESPFWDDISESAKDFICHLLEKDPNERYTCEKALRHPWIDGNTALHRDIYPSVSLQIQKN 298

Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
           FAKSKWRQAFNA AVV HMRKLH
Sbjct: 299 FAKSKWRQAFNAAAVVHHMRKLH 321


>ref|NP_036170.1| calcium/calmodulin-dependent protein kinase type 1B [Mus musculus].
          Length = 343

 Score =  453 bits (1165), Expect = e-127
 Identities = 212/310 (68%), Positives = 268/310 (86%)
 Frame = +1

Query: 37  KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
           KKQ EDI  ++E +E LG+GAFSEV+LA+E+ +  L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5   KKQTEDISSVYEIREKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 64

Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
           LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65  LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 124

Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
            YLH +GIVHRDLKPENLLY +  E+SKIM+SDFGLSK++  G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183

Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
           L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 243

Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
           KDFIR+L+E+DP KR+TC+QA +H WI+GD A  ++I  SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDAAFDRDILGSVSEQIQKNFARTHWKRAFNA 303

Query: 937 TAVVRHMRKL 966
           T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313


>ref|NP_001186281.1| calcium/calmodulin-dependent protein kinase type 1B [Mus musculus].
          Length = 343

 Score =  453 bits (1165), Expect = e-127
 Identities = 212/310 (68%), Positives = 268/310 (86%)
 Frame = +1

Query: 37  KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
           KKQ EDI  ++E +E LG+GAFSEV+LA+E+ +  L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5   KKQTEDISSVYEIREKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 64

Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
           LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65  LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 124

Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
            YLH +GIVHRDLKPENLLY +  E+SKIM+SDFGLSK++  G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183

Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
           L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 243

Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
           KDFIR+L+E+DP KR+TC+QA +H WI+GD A  ++I  SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDAAFDRDILGSVSEQIQKNFARTHWKRAFNA 303

Query: 937 TAVVRHMRKL 966
           T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313


>ref|NP_001186280.1| calcium/calmodulin-dependent protein kinase type 1B [Mus musculus].
          Length = 343

 Score =  453 bits (1165), Expect = e-127
 Identities = 212/310 (68%), Positives = 268/310 (86%)
 Frame = +1

Query: 37  KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
           KKQ EDI  ++E +E LG+GAFSEV+LA+E+ +  L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5   KKQTEDISSVYEIREKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 64

Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
           LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65  LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 124

Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
            YLH +GIVHRDLKPENLLY +  E+SKIM+SDFGLSK++  G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183

Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
           L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 243

Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
           KDFIR+L+E+DP KR+TC+QA +H WI+GD A  ++I  SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDAAFDRDILGSVSEQIQKNFARTHWKRAFNA 303

Query: 937 TAVVRHMRKL 966
           T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313


>ref|NP_663596.1| caM kinase-like vesicle-associated protein [Mus musculus].
          Length = 512

 Score =  292 bits (748), Expect = 3e-79
 Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
 Frame = +1

Query: 43  QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
           Q  ++   ++  + + T  F E+  A++K TGKL   K   K+  +    + +NEI +L+
Sbjct: 16  QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75

Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
            +KH NI+ L D++ +    ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76  MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135

Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
           LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E    ++   CGTP Y+APEV+ 
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193

Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
           ++ Y + VDCW+IGVI YILL G PPFY+E        +D  LF +IL  +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253

Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
           DIS +AKD +  LME + ++R T E+A  H WI+G+ A  KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313

Query: 919 RQAFNATAVVRHMR 960
           ++A   T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327


>ref|NP_775608.1| serine/threonine-protein kinase H1 [Mus musculus].
          Length = 424

 Score =  284 bits (727), Expect = 9e-77
 Identities = 138/281 (49%), Positives = 195/281 (69%), Gaps = 4/281 (1%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
           ++ K  +G G+FS VV  E +AT + +A+K I  K  +G+E   E+E+ VLR+++H NI+
Sbjct: 98  YDIKALIGRGSFSRVVRVEHRATRQPYAIKMIETKYREGREVC-ESELRVLRRVRHANII 156

Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
            L +++E+   +Y+VM+L +GGELFDRI+ KG +TE+DA+ +++ VLD V YLH +GI H
Sbjct: 157 QLVEVFETQERVYMVMELATGGELFDRIIAKGSFTERDATRVLQMVLDGVRYLHALGITH 216

Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGD--VMSTACGTPGYVAPEVLAQKPYSK 600
           RDLKPENLLYY    +SKI+I+DFGL+    KGD  +M T CGTP Y+APEVL +KPY+ 
Sbjct: 217 RDLKPENLLYYHPGTDSKIIITDFGLASARKKGDDCLMKTTCGTPEYIAPEVLVRKPYTN 276

Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
           +VD W++GVIAYILL G  PF D+N ++L+ QIL+ +Y +    W  +S+ AKDFI  L+
Sbjct: 277 SVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYLGEPWPSVSNLAKDFIDRLL 336

Query: 781 EKDPNKRYTCEQAARHPWIAGDTALS--KNIHESVSAQIRK 897
             DP  R T  QA RHPW+    A S  KN+H S+S  + K
Sbjct: 337 TVDPGARMTALQALRHPWVVSMAASSSMKNLHRSISQNLLK 377


>ref|NP_033923.2| calcium/calmodulin-dependent protein kinase type IV [Mus musculus].
          Length = 469

 Score =  271 bits (693), Expect = 8e-73
 Identities = 141/312 (45%), Positives = 197/312 (63%), Gaps = 13/312 (4%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
           FE +  LG GA S V   ++K T K +A+K + K   K     +  EI VL ++ H NI+
Sbjct: 42  FEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK---KIVRTEIGVLLRLSHPNII 98

Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
            L++I+E+P  + LV++LV+GGELFDRIVEKG+Y+E+DA+  ++Q+L+AV YLH  GIVH
Sbjct: 99  KLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVH 158

Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAV 606
           RDLKPENLLY +   ++ + I+DFGLSK+     +M T CGTPGY APE+L    Y   V
Sbjct: 159 RDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEV 218

Query: 607 DCWSIGVIAYILLCGYPPFYDE-NDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLME 783
           D WS+G+I YILLCG+ PFYDE  D  +F +IL  EY F SP+WD++S +AKD ++ L+ 
Sbjct: 219 DMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVKKLIV 278

Query: 784 KDPNKRYTCEQAARHPWIAG--------DTALSK----NIHESVSAQIRKNFAKSKWRQA 927
            DP KR T  QA +HPW+ G        DTA  K    N    + A ++   A S+   A
Sbjct: 279 LDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSA 338

Query: 928 FNATAVVRHMRK 963
            ++   ++   K
Sbjct: 339 SSSHTSIQENHK 350


>ref|XP_003086850.1| PREDICTED: calcium/calmodulin-dependent protein kinase type I-like,
           partial [Mus musculus].
          Length = 290

 Score =  254 bits (648), Expect = 1e-67
 Identities = 128/264 (48%), Positives = 178/264 (67%), Gaps = 5/264 (1%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIK--HEN 240
           ++  +TLG G++S V       TG+ +A K I K+ + G+E  + NEIAVL+K+   H+N
Sbjct: 16  YKVGKTLGAGSYSVVKECVHIDTGRYYAAKVINKRLMAGREHMVRNEIAVLKKVSMGHQN 75

Query: 241 IVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGI 420
           I+ L D +E+ N+LYLV  L  GGELFDRI  KG Y E DA+ LIR  L AV YLH  GI
Sbjct: 76  ILTLVDYFETMNNLYLVTDLALGGELFDRICRKGSYYESDAADLIRATLSAVAYLHDHGI 135

Query: 421 VHRDLKPENLLYYSQDEESKIMISDFGLSKM--EGKGDVMSTACGTPGYVAPEVLAQKPY 594
           VHRDLKPENLL+ + ++ + ++I+DFGLS++  E +  V++T CGTPGY+APE+  +  +
Sbjct: 136 VHRDLKPENLLFRTPEDNADLLIADFGLSRIMDEEQFHVLTTTCGTPGYMAPEIFKKTGH 195

Query: 595 SKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDS-PYWDDISDSAKDFIR 771
            K VD W++GVI Y LLCGY PF  ++D +  + IL A+Y F    YW  +SD+AKDFIR
Sbjct: 196 GKPVDIWALGVITYFLLCGYTPFDRDSDFEEMQAILNADYSFTPLEYWRGVSDNAKDFIR 255

Query: 772 NLMEKDPNKRYTCEQAARHPWIAG 843
             +  DP KR T  +A +HP++AG
Sbjct: 256 RCLTIDPAKRMTAHEALQHPFVAG 279


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,126,015
Number of extensions: 1097170
Number of successful extensions: 6199
Number of sequences better than 1.0e-05: 663
Number of HSP's gapped: 4830
Number of HSP's successfully gapped: 690
Length of query: 422
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 318
Effective length of database: 12,493,815
Effective search space: 3973033170
Effective search space used: 3973033170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013216
         (1267 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_705718.1| calcium/calmodulin-dependent protein kinase typ...   668   0.0  
Alignment   gi|NP_065130.1| calcium/calmodulin-dependent protein kinase typ...   652   0.0  
Alignment   gi|NP_003647.1| calcium/calmodulin-dependent protein kinase typ...   540   e-153
Alignment   gi|NP_065172.1| calcium/calmodulin-dependent protein kinase typ...   480   e-135
Alignment   gi|NP_001129212.1| calcium/calmodulin-dependent protein kinase ...   457   e-129
Alignment   gi|NP_001034671.3| calcium/calmodulin-dependent protein kinase ...   457   e-129
Alignment   gi|NP_076951.2| caM kinase-like vesicle-associated protein [Hom...   292   4e-79
Alignment   gi|NP_006733.1| serine/threonine-protein kinase H1 [Homo sapien...   286   4e-77
Alignment   gi|NP_001735.1| calcium/calmodulin-dependent protein kinase typ...   273   2e-73
Alignment   gi|NP_149117.1| serine/threonine-protein kinase H2 [Homo sapien...   256   4e-68

>ref|NP_705718.1| calcium/calmodulin-dependent protein kinase type 1D isoform 2 [Homo
            sapiens].
          Length = 385

 Score =  668 bits (1724), Expect = 0.0
 Identities = 333/357 (93%), Positives = 336/357 (94%)
 Frame = +1

Query: 1    LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
            +ARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK
Sbjct: 1    MARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 60

Query: 181  GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
            GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD
Sbjct: 61   GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 120

Query: 361  ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
            ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST
Sbjct: 121  ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 180

Query: 541  ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
            ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF
Sbjct: 181  ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 240

Query: 721  DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
            DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTAL+KNIHESVSAQIRKN
Sbjct: 241  DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALNKNIHESVSAQIRKN 300

Query: 901  FAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXXXXXQKDCRAPSTLCSFM 1071
            FAKSKWRQAFNATAVVRHMRKLH                    QKDC APSTLCSF+
Sbjct: 301  FAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSSSLSLASQKDCLAPSTLCSFI 357


>ref|NP_065130.1| calcium/calmodulin-dependent protein kinase type 1D isoform 1 [Homo
            sapiens].
          Length = 357

 Score =  652 bits (1682), Expect = 0.0
 Identities = 325/347 (93%), Positives = 327/347 (94%)
 Frame = +1

Query: 1    LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
            +ARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK
Sbjct: 1    MARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 60

Query: 181  GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
            GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD
Sbjct: 61   GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 120

Query: 361  ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
            ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST
Sbjct: 121  ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 180

Query: 541  ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
            ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF
Sbjct: 181  ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 240

Query: 721  DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
            DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTAL+KNIHESVSAQIRKN
Sbjct: 241  DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALNKNIHESVSAQIRKN 300

Query: 901  FAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXXXXXQKDC 1041
            FAKSKWRQAFNATAVVRHMRKLH                    QKDC
Sbjct: 301  FAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSSSLSLASQKDC 347


>ref|NP_003647.1| calcium/calmodulin-dependent protein kinase type 1 [Homo sapiens].
          Length = 370

 Score =  540 bits (1390), Expect = e-153
 Identities = 262/309 (84%), Positives = 286/309 (92%)
 Frame = +1

Query: 40  KQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVL 219
           KQAEDI+ I++F++ LGTGAFSEV+LAE+K T KL A+KCI K+AL+GKE S+ENEIAVL
Sbjct: 11  KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVL 70

Query: 220 RKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 399
            KIKH NIVAL+DIYES  HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLDAV 
Sbjct: 71  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVK 130

Query: 400 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 579
           YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME  G V+STACGTPGYVAPEVL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVL 190

Query: 580 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 759
           AQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISDSAK
Sbjct: 191 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAK 250

Query: 760 DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 939
           DFIR+LMEKDP KR+TCEQA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAFNAT
Sbjct: 251 DFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNAT 310

Query: 940 AVVRHMRKL 966
           AVVRHMRKL
Sbjct: 311 AVVRHMRKL 319


>ref|NP_065172.1| calcium/calmodulin-dependent protein kinase type 1G [Homo sapiens].
          Length = 476

 Score =  480 bits (1236), Expect = e-135
 Identities = 236/323 (73%), Positives = 275/323 (85%)
 Frame = +1

Query: 1   LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
           + R+  +  SSWKKQ  +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+  
Sbjct: 1   MGRKEEDDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCI-KKSPA 59

Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
            ++SS+ENEIAVL+KIKHENIV LEDIYES  H YLVMQLVSGGELFDRI+E+G YTEKD
Sbjct: 60  FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKD 119

Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
           AS +I+QVL AV YLH  GIVHRDLKPENLLY + +E SKIMI+DFGLSKME  G +MST
Sbjct: 120 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG-IMST 178

Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
           ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I +  YEF
Sbjct: 179 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 238

Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
           +SP+WDDIS+SAKDFI +L+EKDPN+RYTCE+A  HPWI G+TAL ++I+ SVS QI+KN
Sbjct: 239 ESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNTALHRDIYPSVSLQIQKN 298

Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
           FAKSKWRQAFNA AVV HMRKLH
Sbjct: 299 FAKSKWRQAFNAAAVVHHMRKLH 321


>ref|NP_001129212.1| calcium/calmodulin-dependent protein kinase type 1B isoform b [Homo
           sapiens].
          Length = 360

 Score =  457 bits (1176), Expect = e-129
 Identities = 215/310 (69%), Positives = 268/310 (86%)
 Frame = +1

Query: 37  KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
           KK  EDI  ++E +E LG+GAFSEVVLA+E+ +  L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 22  KKHTEDISSVYEIRERLGSGAFSEVVLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 81

Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
           LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 82  LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 141

Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
            YLH +GIVHRDLKPENLLY +  E+SKIM+SDFGLSK++  G+++ TACGTPGYVAPE+
Sbjct: 142 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 200

Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
           L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 201 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 260

Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
           KDFIR+L+E+DP KR+TC+QA RH WI+GDTA  ++I  SVS QIRKNFA++ W++AFNA
Sbjct: 261 KDFIRHLLERDPQKRFTCQQALRHLWISGDTAFDRDILGSVSEQIRKNFARTHWKRAFNA 320

Query: 937 TAVVRHMRKL 966
           T+ +RH+RKL
Sbjct: 321 TSFLRHIRKL 330


>ref|NP_001034671.3| calcium/calmodulin-dependent protein kinase type 1B isoform a [Homo
            sapiens].
          Length = 426

 Score =  457 bits (1176), Expect = e-129
 Identities = 215/310 (69%), Positives = 268/310 (86%)
 Frame = +1

Query: 37   KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
            KK  EDI  ++E +E LG+GAFSEVVLA+E+ +  L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 88   KKHTEDISSVYEIRERLGSGAFSEVVLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 147

Query: 217  LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
            LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 148  LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 207

Query: 397  YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
             YLH +GIVHRDLKPENLLY +  E+SKIM+SDFGLSK++  G+++ TACGTPGYVAPE+
Sbjct: 208  SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 266

Query: 577  LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
            L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 267  LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 326

Query: 757  KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
            KDFIR+L+E+DP KR+TC+QA RH WI+GDTA  ++I  SVS QIRKNFA++ W++AFNA
Sbjct: 327  KDFIRHLLERDPQKRFTCQQALRHLWISGDTAFDRDILGSVSEQIRKNFARTHWKRAFNA 386

Query: 937  TAVVRHMRKL 966
            T+ +RH+RKL
Sbjct: 387  TSFLRHIRKL 396


>ref|NP_076951.2| caM kinase-like vesicle-associated protein [Homo sapiens].
          Length = 501

 Score =  292 bits (748), Expect = 4e-79
 Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
 Frame = +1

Query: 43  QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
           Q  ++   ++  + + T  F E+  A++K TGKL   K   K+  +    + +NEI +L+
Sbjct: 16  QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75

Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
            +KH NI+ L D++ +    ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76  MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135

Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
           LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E    ++   CGTP Y+APEV+ 
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193

Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
           ++ Y + VDCW+IGVI YILL G PPFY+E        +D  LF +IL  +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253

Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
           DIS +AKD +  LME + ++R T E+A  H WI+G+ A  KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313

Query: 919 RQAFNATAVVRHMR 960
           ++A   T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327


>ref|NP_006733.1| serine/threonine-protein kinase H1 [Homo sapiens].
          Length = 424

 Score =  286 bits (731), Expect = 4e-77
 Identities = 138/281 (49%), Positives = 195/281 (69%), Gaps = 4/281 (1%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
           ++ K  +G G+FS VV  E +AT + +A+K I  K  +G+E   E+E+ VLR+++H NI+
Sbjct: 98  YDIKALIGRGSFSRVVRVEHRATRQPYAIKMIETKYREGREVC-ESELRVLRRVRHANII 156

Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
            L +++E+   +Y+VM+L +GGELFDRI+ KG +TE+DA+ +++ VLD V YLH +GI H
Sbjct: 157 QLVEVFETQERVYMVMELATGGELFDRIIAKGSFTERDATRVLQMVLDGVRYLHALGITH 216

Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGD--VMSTACGTPGYVAPEVLAQKPYSK 600
           RDLKPENLLYY    +SKI+I+DFGL+    KGD  +M T CGTP Y+APEVL +KPY+ 
Sbjct: 217 RDLKPENLLYYHPGTDSKIIITDFGLASARKKGDDCLMKTTCGTPEYIAPEVLVRKPYTN 276

Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
           +VD W++GVIAYILL G  PF D+N ++L+ QIL+ +Y +    W  +S+ AKDFI  L+
Sbjct: 277 SVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYSGEPWPSVSNLAKDFIDRLL 336

Query: 781 EKDPNKRYTCEQAARHPWIAGDTALS--KNIHESVSAQIRK 897
             DP  R T  QA RHPW+    A S  KN+H S+S  + K
Sbjct: 337 TVDPGARMTALQALRHPWVVSMAASSSMKNLHRSISQNLLK 377


>ref|NP_001735.1| calcium/calmodulin-dependent protein kinase type IV [Homo sapiens].
          Length = 473

 Score =  273 bits (698), Expect = 2e-73
 Identities = 142/316 (44%), Positives = 198/316 (62%), Gaps = 13/316 (4%)
 Frame = +1

Query: 55  IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
           +   FE +  LG GA S V   ++K T K +A+K + K   K     +  EI VL ++ H
Sbjct: 42  LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK---KIVRTEIGVLLRLSH 98

Query: 235 ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
            NI+ L++I+E+P  + LV++LV+GGELFDRIVEKG+Y+E+DA+  ++Q+L+AV YLH  
Sbjct: 99  PNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHEN 158

Query: 415 GIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPY 594
           GIVHRDLKPENLLY +   ++ + I+DFGLSK+     +M T CGTPGY APE+L    Y
Sbjct: 159 GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAY 218

Query: 595 SKAVDCWSIGVIAYILLCGYPPFYDE-NDSKLFEQILKAEYEFDSPYWDDISDSAKDFIR 771
              VD WS+G+I YILLCG+ PFYDE  D  +F +IL  EY F SP+WD++S +AKD +R
Sbjct: 219 GPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVR 278

Query: 772 NLMEKDPNKRYTCEQAARHPWIAG--------DTALSK----NIHESVSAQIRKNFAKSK 915
            L+  DP KR T  QA +HPW+ G        DTA  K    N    + A ++   A S+
Sbjct: 279 KLIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSR 338

Query: 916 WRQAFNATAVVRHMRK 963
              A ++   ++   K
Sbjct: 339 LGSASSSHGSIQESHK 354


>ref|NP_149117.1| serine/threonine-protein kinase H2 [Homo sapiens].
          Length = 385

 Score =  256 bits (653), Expect = 4e-68
 Identities = 128/279 (45%), Positives = 188/279 (67%), Gaps = 4/279 (1%)
 Frame = +1

Query: 67  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
           ++ K  +GTG+FS VV  E+K T K FA+K +  +  +G+E+ + +E++VLR++ H  IV
Sbjct: 63  YDIKALIGTGSFSRVVRVEQKTTKKPFAIKVMETREREGREACV-SELSVLRRVSHRYIV 121

Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
            L +I+E+ + +Y+VM+L +GGELFDR++ +G +TE+DA  +++ V D + YLH + I H
Sbjct: 122 QLMEIFETEDQVYMVMELATGGELFDRLIAQGSFTERDAVRILQMVADGIRYLHALQITH 181

Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGK-GD-VMSTACGTPGYVAPEVLAQKPYSK 600
           R+LKPENLLYY   EESKI+I+DFGL+    K GD  M T CGTP Y+APEVL +KPY+ 
Sbjct: 182 RNLKPENLLYYHPGEESKILITDFGLAYSGKKSGDWTMKTLCGTPEYIAPEVLLRKPYTS 241

Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
           AVD W++GVI Y LL G+ PF DE+ ++L+ +ILK +Y +    W  IS  AKDFI  L+
Sbjct: 242 AVDMWALGVITYALLSGFLPFDDESQTRLYRKILKGKYNYTGEPWPSISHLAKDFIDKLL 301

Query: 781 EKDPNKRYTCEQAARHPWIAGDTALS--KNIHESVSAQI 891
             +   R +  QA  HPW+    A S  KN+  ++S  +
Sbjct: 302 ILEAGHRMSAGQALDHPWVITMAAGSSMKNLQRAISRNL 340


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,501,980
Number of extensions: 1308250
Number of successful extensions: 7451
Number of sequences better than 1.0e-05: 792
Number of HSP's gapped: 5866
Number of HSP's successfully gapped: 822
Length of query: 422
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,835,944
Effective search space: 4702994248
Effective search space used: 4702994248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013216
         (1267 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL892980.2| Sus scrofa unplaced genomic scaffold ChrUScaf865       276   3e-71
Sscrofa_Chr10                                                         276   3e-71
Sscrofa_Chr13                                                          70   3e-09

>gb|GL892980.2| Sus scrofa unplaced genomic scaffold ChrUScaf865
          Length = 84408

 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Minus

                                                                         
Query: 300   cgtatctggtggagagctgtttgaccggatagtggagaagggattttacacagagaaaga 359
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59819 cgtatctggtggagagctgtttgaccggatagtggagaagggattttacacagagaaaga 59760

                                                                         
Query: 360   tgccagcactctgatccgccaggtcttggatgccgtctactatctgcacagaatgggcat 419
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59759 tgccagcactctgatccgccaggtcttggatgccgtctactatctgcacagaatgggcat 59700

                                
Query: 420   cgtccacagggacctcaag 438
             |||||||||||||||||||
Sbjct: 59699 cgtccacagggacctcaag 59681



 Score =  238 bits (120), Expect = 6e-60
 Identities = 120/120 (100%)
 Strand = Plus / Minus

                                                                         
Query: 922   caagcgtttaatgccacggccgtcgtgagacacatgcggaaactccatcttggcagcagc 981
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11522 caagcgtttaatgccacggccgtcgtgagacacatgcggaaactccatcttggcagcagc 11463

                                                                         
Query: 982   ctggacagttcaaatgcaagtgtatcgggcagcctcagtttggccagccaaaaagattgt 1041
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11462 ctggacagttcaaatgcaagtgtatcgggcagcctcagtttggccagccaaaaagattgt 11403



 Score =  224 bits (113), Expect = 9e-56
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                         
Query: 642   gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 701
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20665 gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 20606

                                                                  
Query: 702   caaggcggagtatgagttcgactctccctactgggatgacatctctgactctg 754
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20605 caaggcggagtatgagttcgactctccctactgggatgacatctctgactctg 20553



 Score =  174 bits (88), Expect = 8e-41
 Identities = 88/88 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1040 gtcgggcaccctccacgctctgtagtttcatgtcctcctcgtcgggggtctcaggagcgg 1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8772 gtcgggcaccctccacgctctgtagtttcatgtcctcctcgtcgggggtctcaggagcgg 8713

                                        
Query: 1100 gagcggatcgaagacccaggcccaccac 1127
            ||||||||||||||||||||||||||||
Sbjct: 8712 gagcggatcgaagacccaggcccaccac 8685



 Score =  161 bits (81), Expect = 1e-36
 Identities = 81/81 (100%)
 Strand = Plus / Minus

                                                                         
Query: 754   gcaaaagacttcattcggaacctgatggagaaagacccaaataaaagatacacatgtgag 813
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18775 gcaaaagacttcattcggaacctgatggagaaagacccaaataaaagatacacatgtgag 18716

                                  
Query: 814   caggcagctcggcacccatgg 834
             |||||||||||||||||||||
Sbjct: 18715 caggcagctcggcacccatgg 18695



 Score =  159 bits (80), Expect = 5e-36
 Identities = 80/80 (100%)
 Strand = Plus / Minus

                                                                         
Query: 437   agcccgaaaacctgttgtactacagtcaagatgaggagtccaaaataatgatcagtgact 496
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53378 agcccgaaaacctgttgtactacagtcaagatgaggagtccaaaataatgatcagtgact 53319

                                 
Query: 497   ttggactgtccaaaatggaa 516
             ||||||||||||||||||||
Sbjct: 53318 ttggactgtccaaaatggaa 53299



 Score =  155 bits (78), Expect = 7e-35
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                         
Query: 565   gctcccgaggtcctcgcccagaaaccctacagcaaagctgtcgactgctggtccattggg 624
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37343 gctcccgaggtcctcgcccagaaaccctacagcaaagctgtcgactgctggtccattggg 37284

                               
Query: 625   gtgattgcctatatcttg 642
             ||||||||||||||||||
Sbjct: 37283 gtgattgcctatatcttg 37266


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Minus

                                                                            
Query: 300      cgtatctggtggagagctgtttgaccggatagtggagaagggattttacacagagaaaga 359
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64969603 cgtatctggtggagagctgtttgaccggatagtggagaagggattttacacagagaaaga 64969544

                                                                            
Query: 360      tgccagcactctgatccgccaggtcttggatgccgtctactatctgcacagaatgggcat 419
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64969543 tgccagcactctgatccgccaggtcttggatgccgtctactatctgcacagaatgggcat 64969484

                                   
Query: 420      cgtccacagggacctcaag 438
                |||||||||||||||||||
Sbjct: 64969483 cgtccacagggacctcaag 64969465



 Score =  264 bits (133), Expect = 1e-67
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                            
Query: 93       cggggcgttttctgaagtggtcttagcggaagagaaggcaactggaaaactgtttgcggt 152
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65034439 cggggcgttttctgaagtggtcttagcggaagagaaggcaactggaaaactgtttgcggt 65034498

                                                                            
Query: 153      gaagtgtatccccaagaaggcgctgaagggcaaagaaagcagcatagagaatgagatagc 212
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65034499 gaagtgtatccccaagaaggcgctgaagggcaaagaaagcagcatagagaatgagatagc 65034558

                             
Query: 213      cgtcctgagaaag 225
                |||||||||||||
Sbjct: 65034559 cgtcctgagaaag 65034571



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                            
Query: 437      agcccgaaaacctgttgtactacagtcaagatgaggagtccaaaataatgatcagtgact 496
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64962926 agcccgaaaacctgttgtactacagtcaagatgaggagtccaaaataatgatcagtgact 64962867

                                                                            
Query: 497      ttggactgtccaaaatggaaggcaaaggagacgtgatgtccacagcctgtgggaccccag 556
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64962866 ttggactgtccaaaatggaaggcaaaggagacgtgatgtccacagcctgtgggaccccag 64962807

                         
Query: 557      gctacgtcg 565
                |||||||||
Sbjct: 64962806 gctacgtcg 64962798



 Score =  240 bits (121), Expect = 2e-60
 Identities = 121/121 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1040     gtcgggcaccctccacgctctgtagtttcatgtcctcctcgtcgggggtctcaggagcgg 1099
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64913391 gtcgggcaccctccacgctctgtagtttcatgtcctcctcgtcgggggtctcaggagcgg 64913332

                                                                            
Query: 1100     gagcggatcgaagacccaggcccaccactgtgacgacggtgcactctggaagcaagtgac 1159
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64913331 gagcggatcgaagacccaggcccaccactgtgacgacggtgcactctggaagcaagtgac 64913272

                 
Query: 1160     t 1160
                |
Sbjct: 64913271 t 64913271



 Score =  238 bits (120), Expect = 6e-60
 Identities = 120/120 (100%)
 Strand = Plus / Minus

                                                                            
Query: 922      caagcgtttaatgccacggccgtcgtgagacacatgcggaaactccatcttggcagcagc 981
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64915999 caagcgtttaatgccacggccgtcgtgagacacatgcggaaactccatcttggcagcagc 64915940

                                                                            
Query: 982      ctggacagttcaaatgcaagtgtatcgggcagcctcagtttggccagccaaaaagattgt 1041
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64915939 ctggacagttcaaatgcaagtgtatcgggcagcctcagtttggccagccaaaaagattgt 64915880



 Score =  224 bits (113), Expect = 9e-56
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                            
Query: 642      gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 701
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64925912 gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 64925853

                                                                     
Query: 702      caaggcggagtatgagttcgactctccctactgggatgacatctctgactctg 754
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64925852 caaggcggagtatgagttcgactctccctactgggatgacatctctgactctg 64925800



 Score =  176 bits (89), Expect = 2e-41
 Identities = 89/89 (100%)
 Strand = Plus / Minus

                                                                            
Query: 833      ggatcgccggtgacacagcccttagcaaaaacatccacgagtccgtcagcgcccagatcc 892
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64916985 ggatcgccggtgacacagcccttagcaaaaacatccacgagtccgtcagcgcccagatcc 64916926

                                             
Query: 893      ggaagaacttcgccaaaagcaagtggaga 921
                |||||||||||||||||||||||||||||
Sbjct: 64916925 ggaagaacttcgccaaaagcaagtggaga 64916897



 Score =  161 bits (81), Expect = 1e-36
 Identities = 81/81 (100%)
 Strand = Plus / Minus

                                                                            
Query: 754      gcaaaagacttcattcggaacctgatggagaaagacccaaataaaagatacacatgtgag 813
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64924102 gcaaaagacttcattcggaacctgatggagaaagacccaaataaaagatacacatgtgag 64924043

                                     
Query: 814      caggcagctcggcacccatgg 834
                |||||||||||||||||||||
Sbjct: 64924042 caggcagctcggcacccatgg 64924022



 Score =  155 bits (78), Expect = 7e-35
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                            
Query: 565      gctcccgaggtcctcgcccagaaaccctacagcaaagctgtcgactgctggtccattggg 624
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64942750 gctcccgaggtcctcgcccagaaaccctacagcaaagctgtcgactgctggtccattggg 64942691

                                  
Query: 625      gtgattgcctatatcttg 642
                ||||||||||||||||||
Sbjct: 64942690 gtgattgcctatatcttg 64942673



 Score =  149 bits (75), Expect = 4e-33
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                            
Query: 225      gattaagcatgaaaacattgtggccctggaagacatttatgaaagcccgaatcacttgta 284
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65129976 gattaagcatgaaaacattgtggccctggaagacatttatgaaagcccgaatcacttgta 65130035

                               
Query: 285      cttggtcatgcagct 299
                |||||||||||||||
Sbjct: 65130036 cttggtcatgcagct 65130050



 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                              
Query: 47       ctgaagacatcaagaaaatcttcgagttcaaggagaccctgggaac 92
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65301489 ctgaagacatcaagaaaatcttcgagttcaaggagaccctgggaac 65301444



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 47/48 (97%), Gaps = 1/48 (2%)
 Strand = Plus / Minus

                                                                
Query: 1221     cagcgccaccagcccctccagagcgat-ccaccttgcatggtgtgcct 1267
                ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 64913210 cagcgccaccagcccctccagagcgatcccaccttgcatggtgtgcct 64913163


>Sscrofa_Chr13 
||          Length = 218635234

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 92/111 (82%)
 Strand = Plus / Plus

                                                                            
Query: 642      gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 701
                |||||| || ||||| || ||||| ||||| |||||  |||| ||||| || |||||  |
Sbjct: 73099968 gctctgtggttacccccccttctatgacgagaatgatgccaaactctttgaacagatttt 73100027

                                                                   
Query: 702      caaggcggagtatgagttcgactctccctactgggatgacatctctgactc 752
                 ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 73100028 gaaggccgagtacgagtttgactctccttactgggacgacatctctgactc 73100078


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,105,436
Number of extensions: 235
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 20
Length of query: 1267
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1246
Effective length of database: 2,808,413,156
Effective search space: 3499282792376
Effective search space used: 3499282792376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)