Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013216
(1267 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002692107.1| PREDICTED: calcium/calmodulin-dependent prot... 595 e-170
Alignment gi|NP_001070336.1| calcium/calmodulin-dependent protein kinase ... 539 e-153
Alignment gi|NP_001070304.1| calcium/calmodulin-dependent protein kinase ... 483 e-136
Alignment gi|XP_605252.2| PREDICTED: calcium/calmodulin-dependent protein... 474 e-134
Alignment gi|NP_001069787.1| calcium/calmodulin-dependent protein kinase ... 457 e-129
Alignment gi|NP_001069344.1| caM kinase-like vesicle-associated protein [... 292 4e-79
Alignment gi|NP_001068881.1| serine/threonine-protein kinase H1 [Bos taur... 286 4e-77
Alignment gi|XP_002691060.1| PREDICTED: calcium/calmodulin-dependent prot... 272 4e-73
Alignment gi|XP_002694373.1| PREDICTED: doublecortin-like kinase 2 [Bos t... 247 1e-65
Alignment gi|XP_616231.5| PREDICTED: doublecortin-like kinase 2 [Bos taur... 247 1e-65
>ref|XP_002692107.1| PREDICTED: calcium/calmodulin-dependent protein kinase ID-like [Bos
taurus].
Length = 379
Score = 595 bits (1533), Expect = e-170
Identities = 302/344 (87%), Positives = 304/344 (88%), Gaps = 17/344 (4%)
Frame = +1
Query: 91 TGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRK--------------- 225
+GAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRK
Sbjct: 8 SGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKFEQNHFSSDGKCGNG 67
Query: 226 --IKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 399
IKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY
Sbjct: 68 RRIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 127
Query: 400 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 579
YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL
Sbjct: 128 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 187
Query: 580 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 759
AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK
Sbjct: 188 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 247
Query: 760 DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 939
DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT
Sbjct: 248 DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 307
Query: 940 AVVRHMRKLHXXXXXXXXXXXXXXXXXXXXQKDCRAPSTLCSFM 1071
AVVRHMRKLH QKDC STLCSF+
Sbjct: 308 AVVRHMRKLHLGSSLDSSNASVSSSLSLASQKDCLTSSTLCSFV 351
>ref|NP_001070336.1| calcium/calmodulin-dependent protein kinase type 1 [Bos taurus].
Length = 370
Score = 539 bits (1389), Expect = e-153
Identities = 263/312 (84%), Positives = 287/312 (91%)
Frame = +1
Query: 31 SWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEI 210
SWK QAEDI+ I++F++ LGTGAFSEV+LAE+K T K+ A+KCI KKAL+GKE S+ENEI
Sbjct: 9 SWK-QAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKMVAIKCIAKKALEGKEGSMENEI 67
Query: 211 AVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLD 390
AVL KIKH NIVAL+DIYES HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLD
Sbjct: 68 AVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLD 127
Query: 391 AVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAP 570
AV YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME V+STACGTPGYVAP
Sbjct: 128 AVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPSSVLSTACGTPGYVAP 187
Query: 571 EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISD 750
EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISD
Sbjct: 188 EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISD 247
Query: 751 SAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAF 930
SAKDFIR+LMEKDP KR+TCEQA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAF
Sbjct: 248 SAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAF 307
Query: 931 NATAVVRHMRKL 966
NATAVVRHMRKL
Sbjct: 308 NATAVVRHMRKL 319
>ref|NP_001070304.1| calcium/calmodulin-dependent protein kinase type 1G [Bos taurus].
Length = 474
Score = 483 bits (1244), Expect = e-136
Identities = 238/323 (73%), Positives = 276/323 (85%)
Frame = +1
Query: 1 LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
+ R+ + SSWKKQ +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+
Sbjct: 1 MGRKEEDDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRVTGKLFALKCI-KKSPA 59
Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
++SS+ENEIAVL+KIKHENIV LEDIYES H YLVMQLVSGGELFDRI+E+G YTEKD
Sbjct: 60 FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKD 119
Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
AS +I+QVL AV YLH GIVHRDLKPENLLY + +E SKIMI+DFGLSKME G VMST
Sbjct: 120 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG-VMST 178
Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I + YEF
Sbjct: 179 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 238
Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
+SP+WDDIS+SAKDFI +L+EKDPN+RYTCE+A RHPWI G+TAL ++I+ SVS QI+KN
Sbjct: 239 ESPFWDDISESAKDFICHLLEKDPNERYTCEKALRHPWINGNTALHRDIYPSVSLQIQKN 298
Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
FAKSKWRQAFNA AVV HMRKLH
Sbjct: 299 FAKSKWRQAFNAAAVVHHMRKLH 321
>ref|XP_605252.2| PREDICTED: calcium/calmodulin-dependent protein kinase ID-like,
partial [Bos taurus].
Length = 285
Score = 474 bits (1219), Expect = e-134
Identities = 233/257 (90%), Positives = 234/257 (91%)
Frame = +1
Query: 301 VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK 480
VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK
Sbjct: 1 VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK 60
Query: 481 IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 660
IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP
Sbjct: 61 IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 120
Query: 661 FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA 840
FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA
Sbjct: 121 FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA 180
Query: 841 GDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXX 1020
GDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLH
Sbjct: 181 GDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSSSLS 240
Query: 1021 XXXQKDCRAPSTLCSFM 1071
QKDC STLCSF+
Sbjct: 241 LASQKDCLTSSTLCSFV 257
>ref|NP_001069787.1| calcium/calmodulin-dependent protein kinase type 1B [Bos taurus].
Length = 342
Score = 457 bits (1176), Expect = e-129
Identities = 214/310 (69%), Positives = 269/310 (86%)
Frame = +1
Query: 37 KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
KKQ EDI ++E +E LG+GAFSEVVLA+E+ + L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5 KKQTEDISSVYEIREKLGSGAFSEVVLAQERGSSHLVALKCIPKKALRGKEALVENEIAV 64
Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
LR++ H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65 LRRVSHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVAQVLGAV 124
Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
YLH +GIVHRDLKPENLLY + E+SKIM+SDFGLSK++ G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183
Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRANYEFDSPFWDDISESA 243
Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
KDFIR+L+E+DP KR+TC+QA +H WI+GDTA K+I SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDTAFDKDILGSVSEQIQKNFARNHWKRAFNA 303
Query: 937 TAVVRHMRKL 966
T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313
>ref|NP_001069344.1| caM kinase-like vesicle-associated protein [Bos taurus].
Length = 504
Score = 292 bits (748), Expect = 4e-79
Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
Frame = +1
Query: 43 QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
Q ++ ++ + + T F E+ A++K TGKL K K+ + + +NEI +L+
Sbjct: 16 QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75
Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
+KH NI+ L D++ + ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76 MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135
Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E ++ CGTP Y+APEV+
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193
Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
++ Y + VDCW+IGVI YILL G PPFY+E +D LF +IL +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253
Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
DIS +AKD + LME + ++R T E+A H WI+G+ A KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313
Query: 919 RQAFNATAVVRHMR 960
++A T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327
>ref|NP_001068881.1| serine/threonine-protein kinase H1 [Bos taurus].
Length = 424
Score = 286 bits (731), Expect = 4e-77
Identities = 138/281 (49%), Positives = 195/281 (69%), Gaps = 4/281 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
++ K +G G+FS VV E +AT + +A+K I K +G+E E+E+ VLR+++H NI+
Sbjct: 98 YDIKALIGRGSFSRVVRVEHRATRQPYAIKMIETKYREGREVC-ESELRVLRRVRHANII 156
Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
L +++E+ +Y+VM+L +GGELFDRI+ KG +TE+DA+ +++ VLD V YLH +GI H
Sbjct: 157 QLVEVFETQERVYMVMELATGGELFDRIIAKGSFTERDATRVLQMVLDGVRYLHALGITH 216
Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGD--VMSTACGTPGYVAPEVLAQKPYSK 600
RDLKPENLLYY +SKI+I+DFGL+ KGD +M T CGTP Y+APEVL +KPY+
Sbjct: 217 RDLKPENLLYYHPGTDSKIIITDFGLASARKKGDDCLMKTTCGTPEYIAPEVLVRKPYTN 276
Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
+VD W++GVIAYILL G PF D+N ++L+ QIL+ +Y + W +S+ AKDFI L+
Sbjct: 277 SVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYSGEPWPSVSNLAKDFIDRLL 336
Query: 781 EKDPNKRYTCEQAARHPWIAGDTALS--KNIHESVSAQIRK 897
DP R T QA RHPW+ A S KN+H S+S + K
Sbjct: 337 TVDPGARMTALQALRHPWVVSMAASSSMKNLHRSISQNLLK 377
>ref|XP_002691060.1| PREDICTED: calcium/calmodulin-dependent protein kinase IV-like [Bos
taurus].
Length = 463
Score = 272 bits (696), Expect = 4e-73
Identities = 143/311 (45%), Positives = 198/311 (63%), Gaps = 13/311 (4%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
FE + LG GA S V ++K T K +A+K + K K + EI VL ++ H NI+
Sbjct: 46 FEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK---KIVRTEIGVLLRLSHPNII 102
Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
L++I+E+P + LV++LV+GGELFDRIVEKG+Y+E+DA+ ++Q+L+AV YLH GIVH
Sbjct: 103 KLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVH 162
Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAV 606
RDLKPENLLY + ++ + I+DFGLSK+ +M T CGTPGY APE+L Y V
Sbjct: 163 RDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEV 222
Query: 607 DCWSIGVIAYILLCGYPPFYDE-NDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLME 783
D WS+G+I YILLCG+ PFYDE D +F +IL EY F SP+WD++S +AKD +R L+
Sbjct: 223 DMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIV 282
Query: 784 KDPNKRYTCEQAARHPWIAG--------DTALSK----NIHESVSAQIRKNFAKSKWRQA 927
DP KR T QA +HPW+ G DTA K N + A ++ A S+ A
Sbjct: 283 LDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSA 342
Query: 928 FNATAVVRHMR 960
++ + V+ R
Sbjct: 343 SSSHSGVQEGR 353
>ref|XP_002694373.1| PREDICTED: doublecortin-like kinase 2 [Bos taurus].
Length = 972
Score = 247 bits (631), Expect = 1e-65
Identities = 125/297 (42%), Positives = 188/297 (63%), Gaps = 4/297 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
++ + +G G F+ V +++TGK FA+K I K GKE IENE+++LR++KH NI+
Sbjct: 392 YKIGKVIGDGNFAVVKECMDRSTGKEFALKIIDKAKCCGKEHLIENEVSILRRVKHPNII 451
Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
L + E+ L+LVM+LV GG+LFD I YTE+D S ++ + +A+ YLH + IVH
Sbjct: 452 MLIEEMETATELFLVMELVKGGDLFDAITSSTKYTERDGSAMVYNLANALRYLHALNIVH 511
Query: 427 RDLKPENLLYYSQDEESK-IMISDFGLSK-MEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
RD+KPENLL + +K + + DFGL+ +EG + T CGTP YVAPE++A+ Y
Sbjct: 512 RDIKPENLLVCEYPDGTKSLKLGDFGLATVVEGP---LYTVCGTPTYVAPEIIAETGYGL 568
Query: 601 AVDCWSIGVIAYILLCGYPPFYDEND--SKLFEQILKAEYEFDSPYWDDISDSAKDFIRN 774
VD W+ GVI YILLCG+PPF EN+ LF+QIL + EF +PYWD+I+DSAK+ I
Sbjct: 569 KVDVWAAGVITYILLCGFPPFRSENNLQEDLFDQILAGKLEFPAPYWDNITDSAKELISQ 628
Query: 775 LMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAV 945
+++ + R T Q HPW++ D + N+ V+ +++++F + +Q T V
Sbjct: 629 MLQVNVEARCTAGQILSHPWVSDDASQENNMQAEVTGKLKQHFNNALPKQNSTTTGV 685
>ref|XP_616231.5| PREDICTED: doublecortin-like kinase 2 [Bos taurus].
Length = 773
Score = 247 bits (631), Expect = 1e-65
Identities = 125/297 (42%), Positives = 188/297 (63%), Gaps = 4/297 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
++ + +G G F+ V +++TGK FA+K I K GKE IENE+++LR++KH NI+
Sbjct: 391 YKIGKVIGDGNFAVVKECMDRSTGKEFALKIIDKAKCCGKEHLIENEVSILRRVKHPNII 450
Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
L + E+ L+LVM+LV GG+LFD I YTE+D S ++ + +A+ YLH + IVH
Sbjct: 451 MLIEEMETATELFLVMELVKGGDLFDAITSSTKYTERDGSAMVYNLANALRYLHALNIVH 510
Query: 427 RDLKPENLLYYSQDEESK-IMISDFGLSK-MEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
RD+KPENLL + +K + + DFGL+ +EG + T CGTP YVAPE++A+ Y
Sbjct: 511 RDIKPENLLVCEYPDGTKSLKLGDFGLATVVEGP---LYTVCGTPTYVAPEIIAETGYGL 567
Query: 601 AVDCWSIGVIAYILLCGYPPFYDEND--SKLFEQILKAEYEFDSPYWDDISDSAKDFIRN 774
VD W+ GVI YILLCG+PPF EN+ LF+QIL + EF +PYWD+I+DSAK+ I
Sbjct: 568 KVDVWAAGVITYILLCGFPPFRSENNLQEDLFDQILAGKLEFPAPYWDNITDSAKELISQ 627
Query: 775 LMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAV 945
+++ + R T Q HPW++ D + N+ V+ +++++F + +Q T V
Sbjct: 628 MLQVNVEARCTAGQILSHPWVSDDASQENNMQAEVTGKLKQHFNNALPKQNSTTTGV 684
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,270,580
Number of extensions: 1284937
Number of successful extensions: 6770
Number of sequences better than 1.0e-05: 603
Number of HSP's gapped: 5505
Number of HSP's successfully gapped: 632
Length of query: 422
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,207,134
Effective search space: 4503661478
Effective search space used: 4503661478
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013216
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013216
(1267 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541780.2| PREDICTED: similar to calcium/calmodulin-depend... 541 e-154
Alignment gi|XP_547392.2| PREDICTED: similar to calcium/calmodulin-depend... 483 e-136
Alignment gi|XP_849488.1| PREDICTED: similar to calcium/calmodulin-depend... 473 e-133
Alignment gi|XP_549361.2| PREDICTED: similar to Calcium/calmodulin-depend... 373 e-103
Alignment gi|XP_861610.1| PREDICTED: similar to CaM kinase-like vesicle-a... 292 4e-79
Alignment gi|XP_850476.1| PREDICTED: similar to CaM kinase-like vesicle-a... 292 4e-79
Alignment gi|XP_858159.1| PREDICTED: similar to Serine/threonine-protein ... 253 4e-67
Alignment gi|XP_858119.1| PREDICTED: similar to Serine/threonine-protein ... 253 4e-67
Alignment gi|XP_858077.1| PREDICTED: similar to Serine/threonine-protein ... 253 4e-67
Alignment gi|XP_858032.1| PREDICTED: similar to Serine/threonine-protein ... 253 4e-67
>ref|XP_541780.2| PREDICTED: similar to calcium/calmodulin-dependent protein kinase I
[Canis familiaris].
Length = 370
Score = 541 bits (1393), Expect = e-154
Identities = 264/312 (84%), Positives = 287/312 (91%)
Frame = +1
Query: 31 SWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEI 210
SWK Q EDI+ I++F++ LGTGAFSEV+LAE+K T KL A+KCI KKAL+GKE S+ENEI
Sbjct: 9 SWK-QVEDIRDIYDFRDVLGTGAFSEVILAEDKRTHKLVAIKCIAKKALEGKEGSMENEI 67
Query: 211 AVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLD 390
AVL KIKH NIVAL+DIYES HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLD
Sbjct: 68 AVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLD 127
Query: 391 AVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAP 570
AV YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME G V+STACGTPGYVAP
Sbjct: 128 AVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAP 187
Query: 571 EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISD 750
EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISD
Sbjct: 188 EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISD 247
Query: 751 SAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAF 930
SAKDFIR+LMEKDP KR+TCEQA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAF
Sbjct: 248 SAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAF 307
Query: 931 NATAVVRHMRKL 966
NATAVVRHMRKL
Sbjct: 308 NATAVVRHMRKL 319
>ref|XP_547392.2| PREDICTED: similar to calcium/calmodulin-dependent protein kinase
IG [Canis familiaris].
Length = 509
Score = 483 bits (1244), Expect = e-136
Identities = 238/323 (73%), Positives = 276/323 (85%)
Frame = +1
Query: 1 LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
+ R+ + SSWKKQ +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+
Sbjct: 34 MGRKEEDDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRVTGKLFALKCI-KKSPA 92
Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
++SS+ENEIAVL+KIKHENIV LEDIYES H YLVMQLVSGGELFDRI+E+G YTEKD
Sbjct: 93 FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKD 152
Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
AS +I+QVL AV YLH GIVHRDLKPENLLY + +E SKIMI+DFGLSKME G VMST
Sbjct: 153 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQSG-VMST 211
Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I + YEF
Sbjct: 212 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 271
Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
+SP+WDDIS+SAKDFI +L+EKDPN+RYTCE+A RHPWI G+TAL ++I+ SVS QI+KN
Sbjct: 272 ESPFWDDISESAKDFICHLLEKDPNERYTCEKALRHPWIDGNTALHRDIYPSVSLQIQKN 331
Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
FAKSKWRQAFNA AVV HMRKLH
Sbjct: 332 FAKSKWRQAFNAAAVVHHMRKLH 354
>ref|XP_849488.1| PREDICTED: similar to calcium/calmodulin-dependent protein kinase ID
isoform 2 [Canis familiaris].
Length = 412
Score = 473 bits (1218), Expect = e-133
Identities = 232/257 (90%), Positives = 234/257 (91%)
Frame = +1
Query: 301 VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK 480
VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK
Sbjct: 128 VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESK 187
Query: 481 IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 660
IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP
Sbjct: 188 IMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 247
Query: 661 FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA 840
FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA
Sbjct: 248 FYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIA 307
Query: 841 GDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXX 1020
GDTAL+KNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLH
Sbjct: 308 GDTALNKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSSSLS 367
Query: 1021 XXXQKDCRAPSTLCSFM 1071
QKDC PSTLCS +
Sbjct: 368 LASQKDCLVPSTLCSLV 384
>ref|XP_549361.2| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase
type 1B (CaM kinase IB) (CaM kinase I beta) (CaMKI-beta)
(CaM-KI beta) (Pregnancy up-regulated non-ubiquitously
expressed CaM kinase homolog) [Canis familiaris].
Length = 278
Score = 373 bits (958), Expect = e-103
Identities = 173/248 (69%), Positives = 217/248 (87%)
Frame = +1
Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
++ H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV Y
Sbjct: 2 RVSHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAVSY 61
Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
LH +GIVHRDLKPENLLY + E+SKIM+SDFGLSK++ G+++ TACGTPGYVAPE+L
Sbjct: 62 LHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPELLE 120
Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKD 762
QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SAKD
Sbjct: 121 QKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESAKD 180
Query: 763 FIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATA 942
FIR+L+E+DP KR+TC+QA +H WI+GD AL K+I SVS QI+KNFA++ W++AFNAT+
Sbjct: 181 FIRHLLERDPQKRFTCQQALQHLWISGDAALDKDILGSVSEQIQKNFARTHWKRAFNATS 240
Query: 943 VVRHMRKL 966
+RH+RKL
Sbjct: 241 FLRHIRKL 248
>ref|XP_861610.1| PREDICTED: similar to CaM kinase-like vesicle-associated isoform 6
[Canis familiaris].
Length = 470
Score = 292 bits (748), Expect = 4e-79
Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
Frame = +1
Query: 43 QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
Q ++ ++ + + T F E+ A++K TGKL K K+ + + +NEI +L+
Sbjct: 16 QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75
Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
+KH NI+ L D++ + ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76 MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135
Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E ++ CGTP Y+APEV+
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193
Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
++ Y + VDCW+IGVI YILL G PPFY+E +D LF +IL +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253
Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
DIS +AKD + LME + ++R T E+A H WI+G+ A KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313
Query: 919 RQAFNATAVVRHMR 960
++A T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327
>ref|XP_850476.1| PREDICTED: similar to CaM kinase-like vesicle-associated isoform 2
[Canis familiaris].
Length = 507
Score = 292 bits (748), Expect = 4e-79
Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
Frame = +1
Query: 43 QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
Q ++ ++ + + T F E+ A++K TGKL K K+ + + +NEI +L+
Sbjct: 16 QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75
Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
+KH NI+ L D++ + ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76 MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135
Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E ++ CGTP Y+APEV+
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193
Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
++ Y + VDCW+IGVI YILL G PPFY+E +D LF +IL +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253
Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
DIS +AKD + LME + ++R T E+A H WI+G+ A KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313
Query: 919 RQAFNATAVVRHMR 960
++A T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327
>ref|XP_858159.1| PREDICTED: similar to Serine/threonine-protein kinase DCAMKL1
(Doublecortin-like and CAM kinase-like 1) isoform 7
[Canis familiaris].
Length = 741
Score = 253 bits (645), Expect = 4e-67
Identities = 128/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
Frame = +1
Query: 55 IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
I + ++ T+G G F+ V E++T + +A+K I K +GKE I+NE+++LR++KH
Sbjct: 387 ITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKH 446
Query: 235 ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
NIV L + + P LYLVM+LV GG+LFD I YTE+DAS ++ + A+ YLH +
Sbjct: 447 PNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSL 506
Query: 415 GIVHRDLKPENLLYYS-QDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKP 591
IVHRD+KPENLL Y QD + + DFGL+ + + T CGTP YVAPE++A+
Sbjct: 507 NIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATI--VDGPLYTVCGTPTYVAPEIIAETG 564
Query: 592 YSKAVDCWSIGVIAYILLCGYPPFYDENDSK--LFEQILKAEYEFDSPYWDDISDSAKDF 765
Y VD W+ GVI YILLCG+PPF D + LF+QIL + +F SPYWD++SDSAK+
Sbjct: 565 YGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKEL 624
Query: 766 IRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHE-SVSAQIRKNF 903
I ++ D ++R++ Q HPW+ D L +N H+ SV+ +I+K+F
Sbjct: 625 ITMMLLVDVDQRFSAVQVLEHPWV-NDDGLPENEHQLSVAGKIKKHF 670
>ref|XP_858119.1| PREDICTED: similar to Serine/threonine-protein kinase DCAMKL1
(Doublecortin-like and CAM kinase-like 1) isoform 6
[Canis familiaris].
Length = 750
Score = 253 bits (645), Expect = 4e-67
Identities = 128/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
Frame = +1
Query: 55 IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
I + ++ T+G G F+ V E++T + +A+K I K +GKE I+NE+++LR++KH
Sbjct: 396 ITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKH 455
Query: 235 ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
NIV L + + P LYLVM+LV GG+LFD I YTE+DAS ++ + A+ YLH +
Sbjct: 456 PNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSL 515
Query: 415 GIVHRDLKPENLLYYS-QDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKP 591
IVHRD+KPENLL Y QD + + DFGL+ + + T CGTP YVAPE++A+
Sbjct: 516 NIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATI--VDGPLYTVCGTPTYVAPEIIAETG 573
Query: 592 YSKAVDCWSIGVIAYILLCGYPPFYDENDSK--LFEQILKAEYEFDSPYWDDISDSAKDF 765
Y VD W+ GVI YILLCG+PPF D + LF+QIL + +F SPYWD++SDSAK+
Sbjct: 574 YGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKEL 633
Query: 766 IRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHE-SVSAQIRKNF 903
I ++ D ++R++ Q HPW+ D L +N H+ SV+ +I+K+F
Sbjct: 634 ITMMLLVDVDQRFSAVQVLEHPWV-NDDGLPENEHQLSVAGKIKKHF 679
>ref|XP_858077.1| PREDICTED: similar to Serine/threonine-protein kinase DCAMKL1
(Doublecortin-like and CAM kinase-like 1) isoform 5
[Canis familiaris].
Length = 741
Score = 253 bits (645), Expect = 4e-67
Identities = 128/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
Frame = +1
Query: 55 IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
I + ++ T+G G F+ V E++T + +A+K I K +GKE I+NE+++LR++KH
Sbjct: 387 ITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKH 446
Query: 235 ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
NIV L + + P LYLVM+LV GG+LFD I YTE+DAS ++ + A+ YLH +
Sbjct: 447 PNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSL 506
Query: 415 GIVHRDLKPENLLYYS-QDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKP 591
IVHRD+KPENLL Y QD + + DFGL+ + + T CGTP YVAPE++A+
Sbjct: 507 NIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATI--VDGPLYTVCGTPTYVAPEIIAETG 564
Query: 592 YSKAVDCWSIGVIAYILLCGYPPFYDENDSK--LFEQILKAEYEFDSPYWDDISDSAKDF 765
Y VD W+ GVI YILLCG+PPF D + LF+QIL + +F SPYWD++SDSAK+
Sbjct: 565 YGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKEL 624
Query: 766 IRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHE-SVSAQIRKNF 903
I ++ D ++R++ Q HPW+ D L +N H+ SV+ +I+K+F
Sbjct: 625 ITMMLLVDVDQRFSAVQVLEHPWV-NDDGLPENEHQLSVAGKIKKHF 670
>ref|XP_858032.1| PREDICTED: similar to Serine/threonine-protein kinase DCAMKL1
(Doublecortin-like and CAM kinase-like 1) isoform 4
[Canis familiaris].
Length = 740
Score = 253 bits (645), Expect = 4e-67
Identities = 128/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
Frame = +1
Query: 55 IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
I + ++ T+G G F+ V E++T + +A+K I K +GKE I+NE+++LR++KH
Sbjct: 386 ITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKH 445
Query: 235 ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
NIV L + + P LYLVM+LV GG+LFD I YTE+DAS ++ + A+ YLH +
Sbjct: 446 PNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSL 505
Query: 415 GIVHRDLKPENLLYYS-QDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKP 591
IVHRD+KPENLL Y QD + + DFGL+ + + T CGTP YVAPE++A+
Sbjct: 506 NIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATI--VDGPLYTVCGTPTYVAPEIIAETG 563
Query: 592 YSKAVDCWSIGVIAYILLCGYPPFYDENDSK--LFEQILKAEYEFDSPYWDDISDSAKDF 765
Y VD W+ GVI YILLCG+PPF D + LF+QIL + +F SPYWD++SDSAK+
Sbjct: 564 YGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKEL 623
Query: 766 IRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHE-SVSAQIRKNF 903
I ++ D ++R++ Q HPW+ D L +N H+ SV+ +I+K+F
Sbjct: 624 ITMMLLVDVDQRFSAVQVLEHPWV-NDDGLPENEHQLSVAGKIKKHF 669
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,274,250
Number of extensions: 1327927
Number of successful extensions: 7990
Number of sequences better than 1.0e-05: 896
Number of HSP's gapped: 6233
Number of HSP's successfully gapped: 929
Length of query: 422
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 317
Effective length of database: 15,374,224
Effective search space: 4873629008
Effective search space used: 4873629008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013216
(1267 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177124.1| calcium/calmodulin-dependent protein kinase ... 540 e-154
Alignment gi|NP_001230864.1| calcium/calmodulin-dependent protein kinase ... 488 e-138
Alignment gi|NP_001230863.1| calcium/calmodulin-dependent protein kinase ... 482 e-136
Alignment gi|XP_003360887.1| PREDICTED: calcium/calmodulin-dependent prot... 468 e-132
Alignment gi|NP_001182295.1| calcium/calmodulin-dependent protein kinase ... 451 e-127
Alignment gi|XP_003358517.1| PREDICTED: caM kinase-like vesicle-associate... 292 2e-79
Alignment gi|XP_003123873.2| PREDICTED: calcium/calmodulin-dependent prot... 266 2e-71
Alignment gi|XP_003354404.1| PREDICTED: calcium/calmodulin-dependent prot... 244 6e-65
Alignment gi|NP_999358.1| calcium/calmodulin-dependent protein kinase typ... 237 1e-62
Alignment gi|NP_999546.1| calcium/calmodulin-dependent protein kinase typ... 237 1e-62
>ref|NP_001177124.1| calcium/calmodulin-dependent protein kinase type 1 [Sus scrofa].
Length = 370
Score = 540 bits (1391), Expect = e-154
Identities = 262/309 (84%), Positives = 286/309 (92%)
Frame = +1
Query: 40 KQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVL 219
KQAEDI+ I++F++ LGTGAFSEV+LAE+K T KL A+KCI KKAL+GKE S+ENEIAVL
Sbjct: 11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 70
Query: 220 RKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 399
KIKH NIVAL+DIYES HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLDAV
Sbjct: 71 HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVK 130
Query: 400 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 579
YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME G V+STACGTPGYVAPEVL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVL 190
Query: 580 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 759
AQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISDSAK
Sbjct: 191 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAK 250
Query: 760 DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 939
DFIR+LMEKDP KR+TC+QA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAFNAT
Sbjct: 251 DFIRHLMEKDPEKRFTCDQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNAT 310
Query: 940 AVVRHMRKL 966
AVVRHMRKL
Sbjct: 311 AVVRHMRKL 319
>ref|NP_001230864.1| calcium/calmodulin-dependent protein kinase ID [Sus scrofa].
Length = 288
Score = 488 bits (1256), Expect = e-138
Identities = 240/260 (92%), Positives = 240/260 (92%)
Frame = +1
Query: 292 MQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDE 471
MQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDE
Sbjct: 1 MQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDE 60
Query: 472 ESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 651
ESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG
Sbjct: 61 ESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 120
Query: 652 YPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHP 831
YPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHP
Sbjct: 121 YPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHP 180
Query: 832 WIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXX 1011
WIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLH
Sbjct: 181 WIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSG 240
Query: 1012 XXXXXXQKDCRAPSTLCSFM 1071
QKDCRAPSTLCSFM
Sbjct: 241 SLSLASQKDCRAPSTLCSFM 260
>ref|NP_001230863.1| calcium/calmodulin-dependent protein kinase IG [Sus scrofa].
Length = 475
Score = 482 bits (1241), Expect = e-136
Identities = 238/323 (73%), Positives = 275/323 (85%)
Frame = +1
Query: 1 LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
+ R+ E SSWKKQ +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+
Sbjct: 1 MGRKEDEDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRVTGKLFALKCI-KKSPA 59
Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
++SS+ENEIAVL+KIKHENIV LEDIYES H YLVMQLVSGGELFDRI+E+G YTE+D
Sbjct: 60 FRDSSLENEIAVLKKIKHENIVTLEDIYESSTHYYLVMQLVSGGELFDRILERGVYTERD 119
Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
AS +IRQVL AV YLH GIVHRDLKPENLLY + +E SKIMI+DFGLSKME G VMST
Sbjct: 120 ASLVIRQVLAAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQSG-VMST 178
Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I + YEF
Sbjct: 179 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 238
Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
+SP+WDDIS+SAKDFI +L+EKDP +RYTCE+A RHPWI G+TAL ++I+ SVS QI+KN
Sbjct: 239 ESPFWDDISESAKDFICHLLEKDPKERYTCEKALRHPWINGNTALHRDIYPSVSLQIQKN 298
Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
FAKSKWRQAFNA AVV HMRKLH
Sbjct: 299 FAKSKWRQAFNAAAVVHHMRKLH 321
>ref|XP_003360887.1| PREDICTED: calcium/calmodulin-dependent protein kinase type 1D-like
[Sus scrofa].
Length = 421
Score = 468 bits (1203), Expect = e-132
Identities = 230/267 (86%), Positives = 238/267 (89%)
Frame = +1
Query: 271 PNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENL 450
P+H ++M++VSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENL
Sbjct: 3 PSH-NMIMRIVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENL 61
Query: 451 LYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVI 630
LYYSQDEESKIMISDFGLSKME G + + CGT G+VAPEVLAQKPYSKAVDCWSIGVI
Sbjct: 62 LYYSQDEESKIMISDFGLSKMEDPGSIPAGVCGTSGWVAPEVLAQKPYSKAVDCWSIGVI 121
Query: 631 AYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTC 810
AYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTC
Sbjct: 122 AYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTC 181
Query: 811 EQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHXXXXXXX 990
EQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLH
Sbjct: 182 EQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNATAVVRHMRKLHLGSSLDS 241
Query: 991 XXXXXXXXXXXXXQKDCRAPSTLCSFM 1071
QKDCRAPSTLCSFM
Sbjct: 242 SNASVSGSLSLASQKDCRAPSTLCSFM 268
>ref|NP_001182295.1| calcium/calmodulin-dependent protein kinase type 1B [Sus scrofa].
Length = 343
Score = 451 bits (1159), Expect = e-127
Identities = 211/310 (68%), Positives = 267/310 (86%)
Frame = +1
Query: 37 KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
K+Q EDI ++E +E LG+GAFSEVVLA+E+ + L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5 KEQTEDISSVYEIREKLGSGAFSEVVLAQERGSSHLVALKCIPKKALRGKEALVENEIAV 64
Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
LR++ H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65 LRRVSHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 124
Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
YLH +GIVHRDLKPENLLY + E+SKIM+SDFGLSK++ G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183
Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
L QKPY KAVD W++ VI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALXVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 243
Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
KDFIR+L+E+DP KR+TC+QA +H WI+GD A K+I SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDAAFDKDILGSVSEQIQKNFARNHWKRAFNA 303
Query: 937 TAVVRHMRKL 966
T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313
>ref|XP_003358517.1| PREDICTED: caM kinase-like vesicle-associated protein [Sus scrofa].
Length = 503
Score = 292 bits (748), Expect = 2e-79
Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
Frame = +1
Query: 43 QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
Q ++ ++ + + T F E+ A++K TGKL K K+ + + +NEI +L+
Sbjct: 16 QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75
Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
+KH NI+ L D++ + ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76 MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135
Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E ++ CGTP Y+APEV+
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193
Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
++ Y + VDCW+IGVI YILL G PPFY+E +D LF +IL +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253
Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
DIS +AKD + LME + ++R T E+A H WI+G+ A KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313
Query: 919 RQAFNATAVVRHMR 960
++A T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327
>ref|XP_003123873.2| PREDICTED: calcium/calmodulin-dependent protein kinase type IV [Sus
scrofa].
Length = 551
Score = 266 bits (679), Expect = 2e-71
Identities = 138/303 (45%), Positives = 193/303 (63%), Gaps = 13/303 (4%)
Frame = +1
Query: 94 GAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIVALEDIYESP 273
GA S V ++K T K +A+K + K K + EI VL ++ H NI+ L++I+E+P
Sbjct: 133 GATSIVYRCKQKGTQKPYALKVLKKTVDK---KIVRTEIGVLLRLSHPNIIKLKEIFETP 189
Query: 274 NHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLL 453
+ LV++LV+GGELFDRIVEKG+Y+E+DA+ ++Q+L+AV YLH GIVHRDLKPENLL
Sbjct: 190 TEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLL 249
Query: 454 YYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIA 633
Y + ++ + I+DFGLSK+ +M T CGTPGY APE+L Y VD WS+G+I
Sbjct: 250 YATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIIT 309
Query: 634 YILLCGYPPFYDE-NDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLMEKDPNKRYTC 810
YILLCG+ PFYDE D +F +IL EY F SP+WD++S +AKD +R L+ DP KR T
Sbjct: 310 YILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTT 369
Query: 811 EQAARHPWIAG--------DTALSK----NIHESVSAQIRKNFAKSKWRQAFNATAVVRH 954
QA +HPW+ G DTA K N + A ++ A S+ A ++ ++
Sbjct: 370 FQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSASSSHGSIQE 429
Query: 955 MRK 963
+K
Sbjct: 430 SQK 432
>ref|XP_003354404.1| PREDICTED: calcium/calmodulin-dependent protein kinase type II
subunit alpha-like [Sus scrofa].
Length = 478
Score = 244 bits (624), Expect = 6e-65
Identities = 125/294 (42%), Positives = 183/294 (62%), Gaps = 3/294 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIENEIAVLRKIKHENI 243
++ E LG GAFS V + G+ +A K I K L ++ +E E + R +KH NI
Sbjct: 13 YQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 72
Query: 244 VALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIV 423
V L D H YL+ LV+GGELF+ IV + +Y+E DAS I+Q+L+AV + H+MG+V
Sbjct: 73 VRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVV 132
Query: 424 HRDLKPENLLYYSQDEESKIMISDFGLS-KMEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
HRDLKPENLL S+ + + + ++DFGL+ ++EG+ GTPGY++PEVL + PY K
Sbjct: 133 HRDLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGK 192
Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
VD W+ GVI YILL GYPPF+DE+ +L++QI Y+F SP WD ++ AKD I ++
Sbjct: 193 PVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKML 252
Query: 781 EKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNF-AKSKWRQAFNAT 939
+P+KR T +A +HPWI+ + ++ +H + K F A+ K + A T
Sbjct: 253 TINPSKRITAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKGAILTT 306
>ref|NP_999358.1| calcium/calmodulin-dependent protein kinase type II subunit gamma
[Sus scrofa].
Length = 539
Score = 237 bits (604), Expect = 1e-62
Identities = 123/297 (41%), Positives = 184/297 (61%), Gaps = 3/297 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIENEIAVLRKIKHENI 243
++ E LG GAFS V +K + + +A K I K L ++ +E E + R +KH NI
Sbjct: 14 YQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 73
Query: 244 VALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIV 423
V L D YLV LV+GGELF+ IV + +Y+E DAS I Q+L++V ++H+ IV
Sbjct: 74 VRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIV 133
Query: 424 HRDLKPENLLYYSQDEESKIMISDFGLS-KMEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
HRDLKPENLL S+ + + + ++DFGL+ +++G+ GTPGY++PEVL + PY K
Sbjct: 134 HRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGK 193
Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
VD W+ GVI YILL GYPPF+DE+ KL++QI Y+F SP WD ++ AK+ I ++
Sbjct: 194 PVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQML 253
Query: 781 EKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQ-IRKNFAKSKWRQAFNATAVV 948
+P KR T +QA +HPW+ + ++ +H + + +RK A+ K + A T +V
Sbjct: 254 TINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKGAILTTMLV 310
>ref|NP_999546.1| calcium/calmodulin-dependent protein kinase type II subunit delta
[Sus scrofa].
Length = 499
Score = 237 bits (604), Expect = 1e-62
Identities = 124/294 (42%), Positives = 178/294 (60%), Gaps = 3/294 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIENEIAVLRKIKHENI 243
++ E LG GAFS V + TG+ +A K I K L ++ +E E + R +KH NI
Sbjct: 14 YQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNI 73
Query: 244 VALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIV 423
V L D YLV LV+GGELF+ IV + +Y+E DAS I+Q+L++V + H GIV
Sbjct: 74 VRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIV 133
Query: 424 HRDLKPENLLYYSQDEESKIMISDFGLS-KMEGKGDVMSTACGTPGYVAPEVLAQKPYSK 600
HRDLKPENLL S+ + + + ++DFGL+ +++G GTPGY++PEVL + PY K
Sbjct: 134 HRDLKPENLLLASKSKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGK 193
Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
VD W+ GVI YILL GYPPF+DE+ +L++QI Y+F SP WD ++ AKD I ++
Sbjct: 194 PVDMWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKML 253
Query: 781 EKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNF-AKSKWRQAFNAT 939
+P KR T +A +HPWI + ++ +H + K F A+ K + A T
Sbjct: 254 TINPAKRITASEALKHPWICQRSTVASMMHRQETVDCLKKFNARRKLKGAILTT 307
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,416,155
Number of extensions: 822375
Number of successful extensions: 4395
Number of sequences better than 1.0e-05: 425
Number of HSP's gapped: 3592
Number of HSP's successfully gapped: 444
Length of query: 422
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 320
Effective length of database: 8,804,438
Effective search space: 2817420160
Effective search space used: 2817420160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013216
(1267 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_796317.2| calcium/calmodulin-dependent protein kinase typ... 665 0.0
Alignment gi|NP_598687.1| calcium/calmodulin-dependent protein kinase typ... 541 e-154
Alignment gi|NP_659066.1| calcium/calmodulin-dependent protein kinase typ... 483 e-136
Alignment gi|NP_036170.1| calcium/calmodulin-dependent protein kinase typ... 453 e-127
Alignment gi|NP_001186281.1| calcium/calmodulin-dependent protein kinase ... 453 e-127
Alignment gi|NP_001186280.1| calcium/calmodulin-dependent protein kinase ... 453 e-127
Alignment gi|NP_663596.1| caM kinase-like vesicle-associated protein [Mus... 292 3e-79
Alignment gi|NP_775608.1| serine/threonine-protein kinase H1 [Mus musculu... 284 9e-77
Alignment gi|NP_033923.2| calcium/calmodulin-dependent protein kinase typ... 271 8e-73
Alignment gi|XP_003086850.1| PREDICTED: calcium/calmodulin-dependent prot... 254 1e-67
>ref|NP_796317.2| calcium/calmodulin-dependent protein kinase type 1D [Mus musculus].
Length = 385
Score = 665 bits (1717), Expect = 0.0
Identities = 332/357 (92%), Positives = 335/357 (93%)
Frame = +1
Query: 1 LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
+ARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK
Sbjct: 1 MARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 60
Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD
Sbjct: 61 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 120
Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST
Sbjct: 121 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 180
Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF
Sbjct: 181 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 240
Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN
Sbjct: 241 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 300
Query: 901 FAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXXXXXQKDCRAPSTLCSFM 1071
FAKSKWRQAFNATAVVRHMR+L QKDC APSTLCSF+
Sbjct: 301 FAKSKWRQAFNATAVVRHMRRLQLGSSLDSSNASVSSNLSLASQKDCLAPSTLCSFL 357
>ref|NP_598687.1| calcium/calmodulin-dependent protein kinase type 1 [Mus musculus].
Length = 374
Score = 541 bits (1394), Expect = e-154
Identities = 263/309 (85%), Positives = 286/309 (92%)
Frame = +1
Query: 40 KQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVL 219
KQAEDI+ I++F++ LGTGAFSEV+LAE+K T KL A+KCI KKAL+GKE S+ENEIAVL
Sbjct: 11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 70
Query: 220 RKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 399
KIKH NIVAL+DIYES HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLDAV
Sbjct: 71 HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVK 130
Query: 400 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 579
YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME G V+STACGTPGYVAPEVL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVL 190
Query: 580 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 759
AQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISDSAK
Sbjct: 191 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAK 250
Query: 760 DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 939
DFIR+LMEKDP KR+TCEQA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAFNAT
Sbjct: 251 DFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNAT 310
Query: 940 AVVRHMRKL 966
AVVRHMRKL
Sbjct: 311 AVVRHMRKL 319
>ref|NP_659066.1| calcium/calmodulin-dependent protein kinase type 1G [Mus musculus].
Length = 477
Score = 483 bits (1244), Expect = e-136
Identities = 238/323 (73%), Positives = 276/323 (85%)
Frame = +1
Query: 1 LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
+ R+ E SSWKKQ +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+
Sbjct: 1 MGRKEEEDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRVTGKLFALKCI-KKSPA 59
Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
++SS+ENEIAVL++IKHENIV LEDIYES H YLVMQLVSGGELFDRI+E+G YTEKD
Sbjct: 60 FRDSSLENEIAVLKRIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKD 119
Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
AS +I+QVL AV YLH GIVHRDLKPENLLY + +E SKIMI+DFGLSKME G VMST
Sbjct: 120 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG-VMST 178
Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I + YEF
Sbjct: 179 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 238
Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
+SP+WDDIS+SAKDFI +L+EKDPN+RYTCE+A RHPWI G+TAL ++I+ SVS QI+KN
Sbjct: 239 ESPFWDDISESAKDFICHLLEKDPNERYTCEKALRHPWIDGNTALHRDIYPSVSLQIQKN 298
Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
FAKSKWRQAFNA AVV HMRKLH
Sbjct: 299 FAKSKWRQAFNAAAVVHHMRKLH 321
>ref|NP_036170.1| calcium/calmodulin-dependent protein kinase type 1B [Mus musculus].
Length = 343
Score = 453 bits (1165), Expect = e-127
Identities = 212/310 (68%), Positives = 268/310 (86%)
Frame = +1
Query: 37 KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
KKQ EDI ++E +E LG+GAFSEV+LA+E+ + L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5 KKQTEDISSVYEIREKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 64
Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65 LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 124
Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
YLH +GIVHRDLKPENLLY + E+SKIM+SDFGLSK++ G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183
Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 243
Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
KDFIR+L+E+DP KR+TC+QA +H WI+GD A ++I SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDAAFDRDILGSVSEQIQKNFARTHWKRAFNA 303
Query: 937 TAVVRHMRKL 966
T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313
>ref|NP_001186281.1| calcium/calmodulin-dependent protein kinase type 1B [Mus musculus].
Length = 343
Score = 453 bits (1165), Expect = e-127
Identities = 212/310 (68%), Positives = 268/310 (86%)
Frame = +1
Query: 37 KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
KKQ EDI ++E +E LG+GAFSEV+LA+E+ + L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5 KKQTEDISSVYEIREKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 64
Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65 LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 124
Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
YLH +GIVHRDLKPENLLY + E+SKIM+SDFGLSK++ G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183
Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 243
Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
KDFIR+L+E+DP KR+TC+QA +H WI+GD A ++I SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDAAFDRDILGSVSEQIQKNFARTHWKRAFNA 303
Query: 937 TAVVRHMRKL 966
T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313
>ref|NP_001186280.1| calcium/calmodulin-dependent protein kinase type 1B [Mus musculus].
Length = 343
Score = 453 bits (1165), Expect = e-127
Identities = 212/310 (68%), Positives = 268/310 (86%)
Frame = +1
Query: 37 KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
KKQ EDI ++E +E LG+GAFSEV+LA+E+ + L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 5 KKQTEDISSVYEIREKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 64
Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 65 LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 124
Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
YLH +GIVHRDLKPENLLY + E+SKIM+SDFGLSK++ G+++ TACGTPGYVAPE+
Sbjct: 125 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 183
Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 184 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 243
Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
KDFIR+L+E+DP KR+TC+QA +H WI+GD A ++I SVS QI+KNFA++ W++AFNA
Sbjct: 244 KDFIRHLLERDPQKRFTCQQALQHLWISGDAAFDRDILGSVSEQIQKNFARTHWKRAFNA 303
Query: 937 TAVVRHMRKL 966
T+ +RH+RKL
Sbjct: 304 TSFLRHIRKL 313
>ref|NP_663596.1| caM kinase-like vesicle-associated protein [Mus musculus].
Length = 512
Score = 292 bits (748), Expect = 3e-79
Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
Frame = +1
Query: 43 QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
Q ++ ++ + + T F E+ A++K TGKL K K+ + + +NEI +L+
Sbjct: 16 QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75
Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
+KH NI+ L D++ + ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76 MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135
Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E ++ CGTP Y+APEV+
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193
Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
++ Y + VDCW+IGVI YILL G PPFY+E +D LF +IL +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253
Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
DIS +AKD + LME + ++R T E+A H WI+G+ A KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313
Query: 919 RQAFNATAVVRHMR 960
++A T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327
>ref|NP_775608.1| serine/threonine-protein kinase H1 [Mus musculus].
Length = 424
Score = 284 bits (727), Expect = 9e-77
Identities = 138/281 (49%), Positives = 195/281 (69%), Gaps = 4/281 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
++ K +G G+FS VV E +AT + +A+K I K +G+E E+E+ VLR+++H NI+
Sbjct: 98 YDIKALIGRGSFSRVVRVEHRATRQPYAIKMIETKYREGREVC-ESELRVLRRVRHANII 156
Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
L +++E+ +Y+VM+L +GGELFDRI+ KG +TE+DA+ +++ VLD V YLH +GI H
Sbjct: 157 QLVEVFETQERVYMVMELATGGELFDRIIAKGSFTERDATRVLQMVLDGVRYLHALGITH 216
Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGD--VMSTACGTPGYVAPEVLAQKPYSK 600
RDLKPENLLYY +SKI+I+DFGL+ KGD +M T CGTP Y+APEVL +KPY+
Sbjct: 217 RDLKPENLLYYHPGTDSKIIITDFGLASARKKGDDCLMKTTCGTPEYIAPEVLVRKPYTN 276
Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
+VD W++GVIAYILL G PF D+N ++L+ QIL+ +Y + W +S+ AKDFI L+
Sbjct: 277 SVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYLGEPWPSVSNLAKDFIDRLL 336
Query: 781 EKDPNKRYTCEQAARHPWIAGDTALS--KNIHESVSAQIRK 897
DP R T QA RHPW+ A S KN+H S+S + K
Sbjct: 337 TVDPGARMTALQALRHPWVVSMAASSSMKNLHRSISQNLLK 377
>ref|NP_033923.2| calcium/calmodulin-dependent protein kinase type IV [Mus musculus].
Length = 469
Score = 271 bits (693), Expect = 8e-73
Identities = 141/312 (45%), Positives = 197/312 (63%), Gaps = 13/312 (4%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
FE + LG GA S V ++K T K +A+K + K K + EI VL ++ H NI+
Sbjct: 42 FEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK---KIVRTEIGVLLRLSHPNII 98
Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
L++I+E+P + LV++LV+GGELFDRIVEKG+Y+E+DA+ ++Q+L+AV YLH GIVH
Sbjct: 99 KLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVH 158
Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAV 606
RDLKPENLLY + ++ + I+DFGLSK+ +M T CGTPGY APE+L Y V
Sbjct: 159 RDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEV 218
Query: 607 DCWSIGVIAYILLCGYPPFYDE-NDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLME 783
D WS+G+I YILLCG+ PFYDE D +F +IL EY F SP+WD++S +AKD ++ L+
Sbjct: 219 DMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVKKLIV 278
Query: 784 KDPNKRYTCEQAARHPWIAG--------DTALSK----NIHESVSAQIRKNFAKSKWRQA 927
DP KR T QA +HPW+ G DTA K N + A ++ A S+ A
Sbjct: 279 LDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSA 338
Query: 928 FNATAVVRHMRK 963
++ ++ K
Sbjct: 339 SSSHTSIQENHK 350
>ref|XP_003086850.1| PREDICTED: calcium/calmodulin-dependent protein kinase type I-like,
partial [Mus musculus].
Length = 290
Score = 254 bits (648), Expect = 1e-67
Identities = 128/264 (48%), Positives = 178/264 (67%), Gaps = 5/264 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIK--HEN 240
++ +TLG G++S V TG+ +A K I K+ + G+E + NEIAVL+K+ H+N
Sbjct: 16 YKVGKTLGAGSYSVVKECVHIDTGRYYAAKVINKRLMAGREHMVRNEIAVLKKVSMGHQN 75
Query: 241 IVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGI 420
I+ L D +E+ N+LYLV L GGELFDRI KG Y E DA+ LIR L AV YLH GI
Sbjct: 76 ILTLVDYFETMNNLYLVTDLALGGELFDRICRKGSYYESDAADLIRATLSAVAYLHDHGI 135
Query: 421 VHRDLKPENLLYYSQDEESKIMISDFGLSKM--EGKGDVMSTACGTPGYVAPEVLAQKPY 594
VHRDLKPENLL+ + ++ + ++I+DFGLS++ E + V++T CGTPGY+APE+ + +
Sbjct: 136 VHRDLKPENLLFRTPEDNADLLIADFGLSRIMDEEQFHVLTTTCGTPGYMAPEIFKKTGH 195
Query: 595 SKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDS-PYWDDISDSAKDFIR 771
K VD W++GVI Y LLCGY PF ++D + + IL A+Y F YW +SD+AKDFIR
Sbjct: 196 GKPVDIWALGVITYFLLCGYTPFDRDSDFEEMQAILNADYSFTPLEYWRGVSDNAKDFIR 255
Query: 772 NLMEKDPNKRYTCEQAARHPWIAG 843
+ DP KR T +A +HP++AG
Sbjct: 256 RCLTIDPAKRMTAHEALQHPFVAG 279
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,126,015
Number of extensions: 1097170
Number of successful extensions: 6199
Number of sequences better than 1.0e-05: 663
Number of HSP's gapped: 4830
Number of HSP's successfully gapped: 690
Length of query: 422
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 318
Effective length of database: 12,493,815
Effective search space: 3973033170
Effective search space used: 3973033170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013216
(1267 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_705718.1| calcium/calmodulin-dependent protein kinase typ... 668 0.0
Alignment gi|NP_065130.1| calcium/calmodulin-dependent protein kinase typ... 652 0.0
Alignment gi|NP_003647.1| calcium/calmodulin-dependent protein kinase typ... 540 e-153
Alignment gi|NP_065172.1| calcium/calmodulin-dependent protein kinase typ... 480 e-135
Alignment gi|NP_001129212.1| calcium/calmodulin-dependent protein kinase ... 457 e-129
Alignment gi|NP_001034671.3| calcium/calmodulin-dependent protein kinase ... 457 e-129
Alignment gi|NP_076951.2| caM kinase-like vesicle-associated protein [Hom... 292 4e-79
Alignment gi|NP_006733.1| serine/threonine-protein kinase H1 [Homo sapien... 286 4e-77
Alignment gi|NP_001735.1| calcium/calmodulin-dependent protein kinase typ... 273 2e-73
Alignment gi|NP_149117.1| serine/threonine-protein kinase H2 [Homo sapien... 256 4e-68
>ref|NP_705718.1| calcium/calmodulin-dependent protein kinase type 1D isoform 2 [Homo
sapiens].
Length = 385
Score = 668 bits (1724), Expect = 0.0
Identities = 333/357 (93%), Positives = 336/357 (94%)
Frame = +1
Query: 1 LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
+ARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK
Sbjct: 1 MARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 60
Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD
Sbjct: 61 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 120
Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST
Sbjct: 121 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 180
Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF
Sbjct: 181 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 240
Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTAL+KNIHESVSAQIRKN
Sbjct: 241 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALNKNIHESVSAQIRKN 300
Query: 901 FAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXXXXXQKDCRAPSTLCSFM 1071
FAKSKWRQAFNATAVVRHMRKLH QKDC APSTLCSF+
Sbjct: 301 FAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSSSLSLASQKDCLAPSTLCSFI 357
>ref|NP_065130.1| calcium/calmodulin-dependent protein kinase type 1D isoform 1 [Homo
sapiens].
Length = 357
Score = 652 bits (1682), Expect = 0.0
Identities = 325/347 (93%), Positives = 327/347 (94%)
Frame = +1
Query: 1 LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
+ARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK
Sbjct: 1 MARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 60
Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD
Sbjct: 61 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 120
Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST
Sbjct: 121 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 180
Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF
Sbjct: 181 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 240
Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTAL+KNIHESVSAQIRKN
Sbjct: 241 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALNKNIHESVSAQIRKN 300
Query: 901 FAKSKWRQAFNATAVVRHMRKLHXXXXXXXXXXXXXXXXXXXXQKDC 1041
FAKSKWRQAFNATAVVRHMRKLH QKDC
Sbjct: 301 FAKSKWRQAFNATAVVRHMRKLHLGSSLDSSNASVSSSLSLASQKDC 347
>ref|NP_003647.1| calcium/calmodulin-dependent protein kinase type 1 [Homo sapiens].
Length = 370
Score = 540 bits (1390), Expect = e-153
Identities = 262/309 (84%), Positives = 286/309 (92%)
Frame = +1
Query: 40 KQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVL 219
KQAEDI+ I++F++ LGTGAFSEV+LAE+K T KL A+KCI K+AL+GKE S+ENEIAVL
Sbjct: 11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVL 70
Query: 220 RKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVY 399
KIKH NIVAL+DIYES HLYL+MQLVSGGELFDRIVEKGFYTE+DAS LI QVLDAV
Sbjct: 71 HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVK 130
Query: 400 YLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVL 579
YLH +GIVHRDLKPENLLYYS DE+SKIMISDFGLSKME G V+STACGTPGYVAPEVL
Sbjct: 131 YLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVL 190
Query: 580 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAK 759
AQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND+KLFEQILKAEYEFDSPYWDDISDSAK
Sbjct: 191 AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAK 250
Query: 760 DFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNAT 939
DFIR+LMEKDP KR+TCEQA +HPWIAGDTAL KNIH+SVS QI+KNFAKSKW+QAFNAT
Sbjct: 251 DFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQIKKNFAKSKWKQAFNAT 310
Query: 940 AVVRHMRKL 966
AVVRHMRKL
Sbjct: 311 AVVRHMRKL 319
>ref|NP_065172.1| calcium/calmodulin-dependent protein kinase type 1G [Homo sapiens].
Length = 476
Score = 480 bits (1236), Expect = e-135
Identities = 236/323 (73%), Positives = 275/323 (85%)
Frame = +1
Query: 1 LARENGESSSSWKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALK 180
+ R+ + SSWKKQ +I+K F F E LG+GAFSEV L +++ TGKLFA+KCI KK+
Sbjct: 1 MGRKEEDDCSSWKKQTTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCI-KKSPA 59
Query: 181 GKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKD 360
++SS+ENEIAVL+KIKHENIV LEDIYES H YLVMQLVSGGELFDRI+E+G YTEKD
Sbjct: 60 FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKD 119
Query: 361 ASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMST 540
AS +I+QVL AV YLH GIVHRDLKPENLLY + +E SKIMI+DFGLSKME G +MST
Sbjct: 120 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG-IMST 178
Query: 541 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEF 720
ACGTPGYVAPEVLAQKPYSKAVDCWSIGVI YILLCGYPPFY+E +SKLFE+I + YEF
Sbjct: 179 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEF 238
Query: 721 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKN 900
+SP+WDDIS+SAKDFI +L+EKDPN+RYTCE+A HPWI G+TAL ++I+ SVS QI+KN
Sbjct: 239 ESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNTALHRDIYPSVSLQIQKN 298
Query: 901 FAKSKWRQAFNATAVVRHMRKLH 969
FAKSKWRQAFNA AVV HMRKLH
Sbjct: 299 FAKSKWRQAFNAAAVVHHMRKLH 321
>ref|NP_001129212.1| calcium/calmodulin-dependent protein kinase type 1B isoform b [Homo
sapiens].
Length = 360
Score = 457 bits (1176), Expect = e-129
Identities = 215/310 (69%), Positives = 268/310 (86%)
Frame = +1
Query: 37 KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
KK EDI ++E +E LG+GAFSEVVLA+E+ + L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 22 KKHTEDISSVYEIRERLGSGAFSEVVLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 81
Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 82 LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 141
Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
YLH +GIVHRDLKPENLLY + E+SKIM+SDFGLSK++ G+++ TACGTPGYVAPE+
Sbjct: 142 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 200
Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 201 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 260
Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
KDFIR+L+E+DP KR+TC+QA RH WI+GDTA ++I SVS QIRKNFA++ W++AFNA
Sbjct: 261 KDFIRHLLERDPQKRFTCQQALRHLWISGDTAFDRDILGSVSEQIRKNFARTHWKRAFNA 320
Query: 937 TAVVRHMRKL 966
T+ +RH+RKL
Sbjct: 321 TSFLRHIRKL 330
>ref|NP_001034671.3| calcium/calmodulin-dependent protein kinase type 1B isoform a [Homo
sapiens].
Length = 426
Score = 457 bits (1176), Expect = e-129
Identities = 215/310 (69%), Positives = 268/310 (86%)
Frame = +1
Query: 37 KKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAV 216
KK EDI ++E +E LG+GAFSEVVLA+E+ + L A+KCIPKKAL+GKE+ +ENEIAV
Sbjct: 88 KKHTEDISSVYEIRERLGSGAFSEVVLAQERGSAHLVALKCIPKKALRGKEALVENEIAV 147
Query: 217 LRKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAV 396
LR+I H NIVALED++ESP+HLYL M+LV+GGELFDRI+E+G YTEKDAS L+ QVL AV
Sbjct: 148 LRRISHPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAV 207
Query: 397 YYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEV 576
YLH +GIVHRDLKPENLLY + E+SKIM+SDFGLSK++ G+++ TACGTPGYVAPE+
Sbjct: 208 SYLHSLGIVHRDLKPENLLYATPFEDSKIMVSDFGLSKIQA-GNMLGTACGTPGYVAPEL 266
Query: 577 LAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSA 756
L QKPY KAVD W++GVI+YILLCGYPPFYDE+D +LF QIL+A YEFDSP+WDDIS+SA
Sbjct: 267 LEQKPYGKAVDVWALGVISYILLCGYPPFYDESDPELFSQILRASYEFDSPFWDDISESA 326
Query: 757 KDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKWRQAFNA 936
KDFIR+L+E+DP KR+TC+QA RH WI+GDTA ++I SVS QIRKNFA++ W++AFNA
Sbjct: 327 KDFIRHLLERDPQKRFTCQQALRHLWISGDTAFDRDILGSVSEQIRKNFARTHWKRAFNA 386
Query: 937 TAVVRHMRKL 966
T+ +RH+RKL
Sbjct: 387 TSFLRHIRKL 396
>ref|NP_076951.2| caM kinase-like vesicle-associated protein [Homo sapiens].
Length = 501
Score = 292 bits (748), Expect = 4e-79
Identities = 139/314 (44%), Positives = 212/314 (67%), Gaps = 8/314 (2%)
Frame = +1
Query: 43 QAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLR 222
Q ++ ++ + + T F E+ A++K TGKL K K+ + + +NEI +L+
Sbjct: 16 QPSEVTDRYDLGQVIKTEEFCEIFRAKDKTTGKLHTCKKFQKRDGRKVRKAAKNEIGILK 75
Query: 223 KIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYY 402
+KH NI+ L D++ + ++ ++L +G E+FD I+++G+Y+E+D S ++RQVL+AV Y
Sbjct: 76 MVKHPNILQLVDVFVTRKEYFIFLELATGREVFDWILDQGYYSERDTSNVVRQVLEAVAY 135
Query: 403 LHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLA 582
LH + IVHR+LK ENL+YY++ + SKI+ISDF L+K+E ++ CGTP Y+APEV+
Sbjct: 136 LHSLKIVHRNLKLENLVYYNRLKNSKIVISDFHLAKLE--NGLIKEPCGTPEYLAPEVVG 193
Query: 583 QKPYSKAVDCWSIGVIAYILLCGYPPFYDE--------NDSKLFEQILKAEYEFDSPYWD 738
++ Y + VDCW+IGVI YILL G PPFY+E +D LF +IL +YEFDSPYWD
Sbjct: 194 RQRYGRPVDCWAIGVIMYILLSGNPPFYEEVEEDDYENHDKNLFRKILAGDYEFDSPYWD 253
Query: 739 DISDSAKDFIRNLMEKDPNKRYTCEQAARHPWIAGDTALSKNIHESVSAQIRKNFAKSKW 918
DIS +AKD + LME + ++R T E+A H WI+G+ A KNI + V AQI KNFA++KW
Sbjct: 254 DISQAAKDLVTRLMEVEQDQRITAEEAISHEWISGNAASDKNIKDGVCAQIEKNFARAKW 313
Query: 919 RQAFNATAVVRHMR 960
++A T +++ +R
Sbjct: 314 KKAVRVTTLMKRLR 327
>ref|NP_006733.1| serine/threonine-protein kinase H1 [Homo sapiens].
Length = 424
Score = 286 bits (731), Expect = 4e-77
Identities = 138/281 (49%), Positives = 195/281 (69%), Gaps = 4/281 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
++ K +G G+FS VV E +AT + +A+K I K +G+E E+E+ VLR+++H NI+
Sbjct: 98 YDIKALIGRGSFSRVVRVEHRATRQPYAIKMIETKYREGREVC-ESELRVLRRVRHANII 156
Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
L +++E+ +Y+VM+L +GGELFDRI+ KG +TE+DA+ +++ VLD V YLH +GI H
Sbjct: 157 QLVEVFETQERVYMVMELATGGELFDRIIAKGSFTERDATRVLQMVLDGVRYLHALGITH 216
Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGKGD--VMSTACGTPGYVAPEVLAQKPYSK 600
RDLKPENLLYY +SKI+I+DFGL+ KGD +M T CGTP Y+APEVL +KPY+
Sbjct: 217 RDLKPENLLYYHPGTDSKIIITDFGLASARKKGDDCLMKTTCGTPEYIAPEVLVRKPYTN 276
Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
+VD W++GVIAYILL G PF D+N ++L+ QIL+ +Y + W +S+ AKDFI L+
Sbjct: 277 SVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYSGEPWPSVSNLAKDFIDRLL 336
Query: 781 EKDPNKRYTCEQAARHPWIAGDTALS--KNIHESVSAQIRK 897
DP R T QA RHPW+ A S KN+H S+S + K
Sbjct: 337 TVDPGARMTALQALRHPWVVSMAASSSMKNLHRSISQNLLK 377
>ref|NP_001735.1| calcium/calmodulin-dependent protein kinase type IV [Homo sapiens].
Length = 473
Score = 273 bits (698), Expect = 2e-73
Identities = 142/316 (44%), Positives = 198/316 (62%), Gaps = 13/316 (4%)
Frame = +1
Query: 55 IKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKH 234
+ FE + LG GA S V ++K T K +A+K + K K + EI VL ++ H
Sbjct: 42 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDK---KIVRTEIGVLLRLSH 98
Query: 235 ENIVALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRM 414
NI+ L++I+E+P + LV++LV+GGELFDRIVEKG+Y+E+DA+ ++Q+L+AV YLH
Sbjct: 99 PNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHEN 158
Query: 415 GIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPY 594
GIVHRDLKPENLLY + ++ + I+DFGLSK+ +M T CGTPGY APE+L Y
Sbjct: 159 GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAY 218
Query: 595 SKAVDCWSIGVIAYILLCGYPPFYDE-NDSKLFEQILKAEYEFDSPYWDDISDSAKDFIR 771
VD WS+G+I YILLCG+ PFYDE D +F +IL EY F SP+WD++S +AKD +R
Sbjct: 219 GPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVR 278
Query: 772 NLMEKDPNKRYTCEQAARHPWIAG--------DTALSK----NIHESVSAQIRKNFAKSK 915
L+ DP KR T QA +HPW+ G DTA K N + A ++ A S+
Sbjct: 279 KLIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSR 338
Query: 916 WRQAFNATAVVRHMRK 963
A ++ ++ K
Sbjct: 339 LGSASSSHGSIQESHK 354
>ref|NP_149117.1| serine/threonine-protein kinase H2 [Homo sapiens].
Length = 385
Score = 256 bits (653), Expect = 4e-68
Identities = 128/279 (45%), Positives = 188/279 (67%), Gaps = 4/279 (1%)
Frame = +1
Query: 67 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 246
++ K +GTG+FS VV E+K T K FA+K + + +G+E+ + +E++VLR++ H IV
Sbjct: 63 YDIKALIGTGSFSRVVRVEQKTTKKPFAIKVMETREREGREACV-SELSVLRRVSHRYIV 121
Query: 247 ALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHRMGIVH 426
L +I+E+ + +Y+VM+L +GGELFDR++ +G +TE+DA +++ V D + YLH + I H
Sbjct: 122 QLMEIFETEDQVYMVMELATGGELFDRLIAQGSFTERDAVRILQMVADGIRYLHALQITH 181
Query: 427 RDLKPENLLYYSQDEESKIMISDFGLSKMEGK-GD-VMSTACGTPGYVAPEVLAQKPYSK 600
R+LKPENLLYY EESKI+I+DFGL+ K GD M T CGTP Y+APEVL +KPY+
Sbjct: 182 RNLKPENLLYYHPGEESKILITDFGLAYSGKKSGDWTMKTLCGTPEYIAPEVLLRKPYTS 241
Query: 601 AVDCWSIGVIAYILLCGYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRNLM 780
AVD W++GVI Y LL G+ PF DE+ ++L+ +ILK +Y + W IS AKDFI L+
Sbjct: 242 AVDMWALGVITYALLSGFLPFDDESQTRLYRKILKGKYNYTGEPWPSISHLAKDFIDKLL 301
Query: 781 EKDPNKRYTCEQAARHPWIAGDTALS--KNIHESVSAQI 891
+ R + QA HPW+ A S KN+ ++S +
Sbjct: 302 ILEAGHRMSAGQALDHPWVITMAAGSSMKNLQRAISRNL 340
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,501,980
Number of extensions: 1308250
Number of successful extensions: 7451
Number of sequences better than 1.0e-05: 792
Number of HSP's gapped: 5866
Number of HSP's successfully gapped: 822
Length of query: 422
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,835,944
Effective search space: 4702994248
Effective search space used: 4702994248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013216
(1267 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892980.2| Sus scrofa unplaced genomic scaffold ChrUScaf865 276 3e-71
Sscrofa_Chr10 276 3e-71
Sscrofa_Chr13 70 3e-09
>gb|GL892980.2| Sus scrofa unplaced genomic scaffold ChrUScaf865
Length = 84408
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 300 cgtatctggtggagagctgtttgaccggatagtggagaagggattttacacagagaaaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59819 cgtatctggtggagagctgtttgaccggatagtggagaagggattttacacagagaaaga 59760
Query: 360 tgccagcactctgatccgccaggtcttggatgccgtctactatctgcacagaatgggcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59759 tgccagcactctgatccgccaggtcttggatgccgtctactatctgcacagaatgggcat 59700
Query: 420 cgtccacagggacctcaag 438
|||||||||||||||||||
Sbjct: 59699 cgtccacagggacctcaag 59681
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 922 caagcgtttaatgccacggccgtcgtgagacacatgcggaaactccatcttggcagcagc 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11522 caagcgtttaatgccacggccgtcgtgagacacatgcggaaactccatcttggcagcagc 11463
Query: 982 ctggacagttcaaatgcaagtgtatcgggcagcctcagtttggccagccaaaaagattgt 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11462 ctggacagttcaaatgcaagtgtatcgggcagcctcagtttggccagccaaaaagattgt 11403
Score = 224 bits (113), Expect = 9e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 642 gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20665 gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 20606
Query: 702 caaggcggagtatgagttcgactctccctactgggatgacatctctgactctg 754
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20605 caaggcggagtatgagttcgactctccctactgggatgacatctctgactctg 20553
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 1040 gtcgggcaccctccacgctctgtagtttcatgtcctcctcgtcgggggtctcaggagcgg 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8772 gtcgggcaccctccacgctctgtagtttcatgtcctcctcgtcgggggtctcaggagcgg 8713
Query: 1100 gagcggatcgaagacccaggcccaccac 1127
||||||||||||||||||||||||||||
Sbjct: 8712 gagcggatcgaagacccaggcccaccac 8685
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 754 gcaaaagacttcattcggaacctgatggagaaagacccaaataaaagatacacatgtgag 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18775 gcaaaagacttcattcggaacctgatggagaaagacccaaataaaagatacacatgtgag 18716
Query: 814 caggcagctcggcacccatgg 834
|||||||||||||||||||||
Sbjct: 18715 caggcagctcggcacccatgg 18695
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 437 agcccgaaaacctgttgtactacagtcaagatgaggagtccaaaataatgatcagtgact 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53378 agcccgaaaacctgttgtactacagtcaagatgaggagtccaaaataatgatcagtgact 53319
Query: 497 ttggactgtccaaaatggaa 516
||||||||||||||||||||
Sbjct: 53318 ttggactgtccaaaatggaa 53299
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 565 gctcccgaggtcctcgcccagaaaccctacagcaaagctgtcgactgctggtccattggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37343 gctcccgaggtcctcgcccagaaaccctacagcaaagctgtcgactgctggtccattggg 37284
Query: 625 gtgattgcctatatcttg 642
||||||||||||||||||
Sbjct: 37283 gtgattgcctatatcttg 37266
>Sscrofa_Chr10
|| Length = 79102373
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 300 cgtatctggtggagagctgtttgaccggatagtggagaagggattttacacagagaaaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64969603 cgtatctggtggagagctgtttgaccggatagtggagaagggattttacacagagaaaga 64969544
Query: 360 tgccagcactctgatccgccaggtcttggatgccgtctactatctgcacagaatgggcat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64969543 tgccagcactctgatccgccaggtcttggatgccgtctactatctgcacagaatgggcat 64969484
Query: 420 cgtccacagggacctcaag 438
|||||||||||||||||||
Sbjct: 64969483 cgtccacagggacctcaag 64969465
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 93 cggggcgttttctgaagtggtcttagcggaagagaaggcaactggaaaactgtttgcggt 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65034439 cggggcgttttctgaagtggtcttagcggaagagaaggcaactggaaaactgtttgcggt 65034498
Query: 153 gaagtgtatccccaagaaggcgctgaagggcaaagaaagcagcatagagaatgagatagc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65034499 gaagtgtatccccaagaaggcgctgaagggcaaagaaagcagcatagagaatgagatagc 65034558
Query: 213 cgtcctgagaaag 225
|||||||||||||
Sbjct: 65034559 cgtcctgagaaag 65034571
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 437 agcccgaaaacctgttgtactacagtcaagatgaggagtccaaaataatgatcagtgact 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64962926 agcccgaaaacctgttgtactacagtcaagatgaggagtccaaaataatgatcagtgact 64962867
Query: 497 ttggactgtccaaaatggaaggcaaaggagacgtgatgtccacagcctgtgggaccccag 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64962866 ttggactgtccaaaatggaaggcaaaggagacgtgatgtccacagcctgtgggaccccag 64962807
Query: 557 gctacgtcg 565
|||||||||
Sbjct: 64962806 gctacgtcg 64962798
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 1040 gtcgggcaccctccacgctctgtagtttcatgtcctcctcgtcgggggtctcaggagcgg 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64913391 gtcgggcaccctccacgctctgtagtttcatgtcctcctcgtcgggggtctcaggagcgg 64913332
Query: 1100 gagcggatcgaagacccaggcccaccactgtgacgacggtgcactctggaagcaagtgac 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64913331 gagcggatcgaagacccaggcccaccactgtgacgacggtgcactctggaagcaagtgac 64913272
Query: 1160 t 1160
|
Sbjct: 64913271 t 64913271
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 922 caagcgtttaatgccacggccgtcgtgagacacatgcggaaactccatcttggcagcagc 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64915999 caagcgtttaatgccacggccgtcgtgagacacatgcggaaactccatcttggcagcagc 64915940
Query: 982 ctggacagttcaaatgcaagtgtatcgggcagcctcagtttggccagccaaaaagattgt 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64915939 ctggacagttcaaatgcaagtgtatcgggcagcctcagtttggccagccaaaaagattgt 64915880
Score = 224 bits (113), Expect = 9e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 642 gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64925912 gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 64925853
Query: 702 caaggcggagtatgagttcgactctccctactgggatgacatctctgactctg 754
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64925852 caaggcggagtatgagttcgactctccctactgggatgacatctctgactctg 64925800
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 833 ggatcgccggtgacacagcccttagcaaaaacatccacgagtccgtcagcgcccagatcc 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64916985 ggatcgccggtgacacagcccttagcaaaaacatccacgagtccgtcagcgcccagatcc 64916926
Query: 893 ggaagaacttcgccaaaagcaagtggaga 921
|||||||||||||||||||||||||||||
Sbjct: 64916925 ggaagaacttcgccaaaagcaagtggaga 64916897
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 754 gcaaaagacttcattcggaacctgatggagaaagacccaaataaaagatacacatgtgag 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64924102 gcaaaagacttcattcggaacctgatggagaaagacccaaataaaagatacacatgtgag 64924043
Query: 814 caggcagctcggcacccatgg 834
|||||||||||||||||||||
Sbjct: 64924042 caggcagctcggcacccatgg 64924022
Score = 155 bits (78), Expect = 7e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 565 gctcccgaggtcctcgcccagaaaccctacagcaaagctgtcgactgctggtccattggg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64942750 gctcccgaggtcctcgcccagaaaccctacagcaaagctgtcgactgctggtccattggg 64942691
Query: 625 gtgattgcctatatcttg 642
||||||||||||||||||
Sbjct: 64942690 gtgattgcctatatcttg 64942673
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 225 gattaagcatgaaaacattgtggccctggaagacatttatgaaagcccgaatcacttgta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65129976 gattaagcatgaaaacattgtggccctggaagacatttatgaaagcccgaatcacttgta 65130035
Query: 285 cttggtcatgcagct 299
|||||||||||||||
Sbjct: 65130036 cttggtcatgcagct 65130050
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 47 ctgaagacatcaagaaaatcttcgagttcaaggagaccctgggaac 92
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65301489 ctgaagacatcaagaaaatcttcgagttcaaggagaccctgggaac 65301444
Score = 79.8 bits (40), Expect = 3e-12
Identities = 47/48 (97%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 1221 cagcgccaccagcccctccagagcgat-ccaccttgcatggtgtgcct 1267
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 64913210 cagcgccaccagcccctccagagcgatcccaccttgcatggtgtgcct 64913163
>Sscrofa_Chr13
|| Length = 218635234
Score = 69.9 bits (35), Expect = 3e-09
Identities = 92/111 (82%)
Strand = Plus / Plus
Query: 642 gctctgcggctaccctcctttctacgacgaaaatgactccaagctcttcgagcagatcct 701
|||||| || ||||| || ||||| ||||| ||||| |||| ||||| || ||||| |
Sbjct: 73099968 gctctgtggttacccccccttctatgacgagaatgatgccaaactctttgaacagatttt 73100027
Query: 702 caaggcggagtatgagttcgactctccctactgggatgacatctctgactc 752
||||| ||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct: 73100028 gaaggccgagtacgagtttgactctccttactgggacgacatctctgactc 73100078
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,105,436
Number of extensions: 235
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 20
Length of query: 1267
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1246
Effective length of database: 2,808,413,156
Effective search space: 3499282792376
Effective search space used: 3499282792376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)