Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013217
(686 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029601.1| ribonuclease kappa [Bos taurus]. 197 7e-51
>ref|NP_001029601.1| ribonuclease kappa [Bos taurus].
Length = 98
Score = 197 bits (501), Expect = 7e-51
Identities = 95/98 (96%), Positives = 96/98 (97%)
Frame = +1
Query: 124 MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYK 303
MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQ+IY
Sbjct: 1 MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQNIYN 60
Query: 304 LYEQVSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR 417
LYEQVSYNCFIAA LYLLLGGFSFCQVRLNKRKEYMVR
Sbjct: 61 LYEQVSYNCFIAASLYLLLGGFSFCQVRLNKRKEYMVR 98
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,258,015
Number of extensions: 698215
Number of successful extensions: 3073
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3060
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 129
Effective length of database: 14,405,662
Effective search space: 1858330398
Effective search space used: 1858330398
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013217
(686 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848624.1| PREDICTED: similar to CG40127-PA.3 isoform 1 [C... 192 3e-49
Alignment gi|XP_856577.1| PREDICTED: hypothetical protein XP_851484 isofo... 137 9e-33
>ref|XP_848624.1| PREDICTED: similar to CG40127-PA.3 isoform 1 [Canis familiaris].
Length = 98
Score = 192 bits (487), Expect = 3e-49
Identities = 93/98 (94%), Positives = 94/98 (95%)
Frame = +1
Query: 124 MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYK 303
MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFE PQ IY
Sbjct: 1 MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFEKDPQKIYD 60
Query: 304 LYEQVSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR 417
LYE+VSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR
Sbjct: 61 LYERVSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR 98
>ref|XP_856577.1| PREDICTED: hypothetical protein XP_851484 isoform 2 [Canis
familiaris].
Length = 71
Score = 137 bits (345), Expect = 9e-33
Identities = 66/71 (92%), Positives = 67/71 (94%)
Frame = +1
Query: 205 MLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYKLYEQVSYNCFIAAGLYLLLGGFSFCQV 384
MLGIFFNVHSAVLIEDVPFTEKDFE PQ IY LYE+VSYNCFIAAGLYLLLGGFSFCQV
Sbjct: 1 MLGIFFNVHSAVLIEDVPFTEKDFEKDPQKIYDLYERVSYNCFIAAGLYLLLGGFSFCQV 60
Query: 385 RLNKRKEYMVR 417
RLNKRKEYMVR
Sbjct: 61 RLNKRKEYMVR 71
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,307,176
Number of extensions: 710861
Number of successful extensions: 3248
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3239
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 129
Effective length of database: 15,574,240
Effective search space: 2009076960
Effective search space used: 2009076960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013217
(686 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358286.1| PREDICTED: ribonuclease kappa-like, partial ... 240 5e-64
Alignment gi|XP_003358276.1| PREDICTED: hypothetical protein LOC100625980... 240 5e-64
>ref|XP_003358286.1| PREDICTED: ribonuclease kappa-like, partial [Sus scrofa].
Length = 140
Score = 240 bits (613), Expect = 5e-64
Identities = 119/139 (85%), Positives = 119/139 (85%)
Frame = +1
Query: 1 TCSRSSAAXXXXXXXXXXXXXXXXXXXXTWPTSRRSPTPFFMASLLCCGPKLAACGIVLS 180
TCSRSSAA TWPTSRRSPTPFFMASLLCCGPKLAACGIVLS
Sbjct: 2 TCSRSSAARAPKSCSLSPSSSASSCRLSTWPTSRRSPTPFFMASLLCCGPKLAACGIVLS 61
Query: 181 AWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYKLYEQVSYNCFIAAGLYLLL 360
AWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYKLYEQVSYNCFIAAGLYLLL
Sbjct: 62 AWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYKLYEQVSYNCFIAAGLYLLL 121
Query: 361 GGFSFCQVRLNKRKEYMVR 417
GGFSFCQVRLNKRKEYMVR
Sbjct: 122 GGFSFCQVRLNKRKEYMVR 140
>ref|XP_003358276.1| PREDICTED: hypothetical protein LOC100625980 [Sus scrofa].
Length = 203
Score = 240 bits (613), Expect = 5e-64
Identities = 119/139 (85%), Positives = 119/139 (85%)
Frame = +1
Query: 1 TCSRSSAAXXXXXXXXXXXXXXXXXXXXTWPTSRRSPTPFFMASLLCCGPKLAACGIVLS 180
TCSRSSAA TWPTSRRSPTPFFMASLLCCGPKLAACGIVLS
Sbjct: 65 TCSRSSAARAPKSCSLSPSSSASSCRLSTWPTSRRSPTPFFMASLLCCGPKLAACGIVLS 124
Query: 181 AWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYKLYEQVSYNCFIAAGLYLLL 360
AWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYKLYEQVSYNCFIAAGLYLLL
Sbjct: 125 AWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYKLYEQVSYNCFIAAGLYLLL 184
Query: 361 GGFSFCQVRLNKRKEYMVR 417
GGFSFCQVRLNKRKEYMVR
Sbjct: 185 GGFSFCQVRLNKRKEYMVR 203
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,834,153
Number of extensions: 474498
Number of successful extensions: 2065
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2052
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,978,717
Effective search space: 1194169361
Effective search space used: 1194169361
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013217
(686 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776103.1| ribonuclease kappa [Mus musculus]. 199 1e-51
>ref|NP_776103.1| ribonuclease kappa [Mus musculus].
Length = 98
Score = 199 bits (507), Expect = 1e-51
Identities = 96/98 (97%), Positives = 97/98 (98%)
Frame = +1
Query: 124 MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQDIYK 303
MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQ+IY
Sbjct: 1 MASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQNIYN 60
Query: 304 LYEQVSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR 417
LYEQVSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR
Sbjct: 61 LYEQVSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR 98
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,804,540
Number of extensions: 564342
Number of successful extensions: 2470
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2465
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 130
Effective length of database: 12,674,031
Effective search space: 1647624030
Effective search space used: 1647624030
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013217
(686 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001004333.2| ribonuclease kappa [Homo sapiens]. 217 9e-57
>ref|NP_001004333.2| ribonuclease kappa [Homo sapiens].
Length = 137
Score = 217 bits (552), Expect = 9e-57
Identities = 104/106 (98%), Positives = 105/106 (99%)
Frame = +1
Query: 100 RRSPTPFFMASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFE 279
RRSPTPFFMASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFE
Sbjct: 32 RRSPTPFFMASLLCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFE 91
Query: 280 NGPQDIYKLYEQVSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR 417
NGPQ+IY LYEQVSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR
Sbjct: 92 NGPQNIYNLYEQVSYNCFIAAGLYLLLGGFSFCQVRLNKRKEYMVR 137
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,694,520
Number of extensions: 685359
Number of successful extensions: 3144
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3134
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 129
Effective length of database: 15,033,728
Effective search space: 1939350912
Effective search space used: 1939350912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013217
(686 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 728 0.0
Sscrofa_Chr04 319 1e-84
Sscrofa_ChrX 103 1e-19
>Sscrofa_Chr12
|| Length = 63588571
Score = 728 bits (367), Expect = 0.0
Identities = 384/390 (98%), Gaps = 6/390 (1%)
Strand = Plus / Minus
Query: 279 gaatggcccccaggacatatacaagctctacgagcaagtcagctacaactgtttcatcgc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54720952 gaatggcccccaggacatatacaagctctacgagcaagtcagctacaactgtttcatcgc 54720893
Query: 339 cgcgggcctttaccttctcctcggaggcttctctttctgccaagttcggctcaataagcg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54720892 cgcgggcctttaccttctcctcggaggcttctctttctgccaagttcggctcaataagcg 54720833
Query: 399 caaggaatatatggtgcgctagagcaccactgcgtttccccgctccagccccctcttcta 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54720832 caaggaatatatggtgcgctagagcaccactgcgtttccccgctccagccccctcttcta 54720773
Query: 459 tttaaagaccacccggtcaaccccg------ccccgccccgcccattctggagccctctg 512
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 54720772 tttaaagaccacccggtcaaccccgcccccgccccgccccgcccattctggagccctctg 54720713
Query: 513 cggactgggtttccctggctagagatggaatcccttgttcaccaacctcgggagactgcc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54720712 cggactgggtttccctggctagagatggaatcccttgttcaccaacctcgggagactgcc 54720653
Query: 573 cccagtggagggaggctagggctggccgtcccctatccctctggccctcttgccatgtcc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54720652 cccagtggagggaggctagggctggccgtcccctatccctctggccctcttgccatgtcc 54720593
Query: 633 ggttccacaataaaagagaaactgctctct 662
||||||||||||||||||||||||||||||
Sbjct: 54720592 ggttccacaataaaagagaaactgctctct 54720563
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Minus
Query: 1 acctgctctcggtcctctgcggcgcgagcccccaagtcctgctcgctttcccccagctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54722284 acctgctctcggtcctctgcggcgcgagcccccaagtcctgctcgctttcccccagctca 54722225
Query: 61 tcggcctcctcctgccgcctttctacctggcccacctctaggcgatccccgactcccttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54722224 tcggcctcctcctgccgcctttctacctggcccacctctaggcgatccccgactcccttc 54722165
Query: 121 ttcatggcgtcgcttctgtgctgtgggcccaagctggccgcctgcggcatcgtccttagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54722164 ttcatggcgtcgcttctgtgctgtgggcccaagctggccgcctgcggcatcgtccttagc 54722105
Query: 181 gcctggggagtgatcatgttg 201
|||||||||||||||||||||
Sbjct: 54722104 gcctggggagtgatcatgttg 54722084
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 201 gataatgctcggaatctttttcaatgtccactctgctgtgctcattgaagacgttccttt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54721414 gataatgctcggaatctttttcaatgtccactctgctgtgctcattgaagacgttccttt 54721355
Query: 261 cacggagaaagattttgag 279
|||||||||||||||||||
Sbjct: 54721354 cacggagaaagattttgag 54721336
>Sscrofa_Chr04
|| Length = 143465943
Score = 319 bits (161), Expect = 1e-84
Identities = 292/333 (87%), Gaps = 7/333 (2%)
Strand = Plus / Minus
Query: 30 ccccaagtcctgctcgctttcccccagctcatcgg--cctcctcctgccgcctttctacc 87
||||||||||||||| ||||| ||||||||||||| | ||||| ||| |||||||||
Sbjct: 121321005 ccccaagtcctgctcactttctcccagctcatcggggcttcctctcaccgtctttctacc 121320946
Query: 88 tggcccacctctaggcgatccccgactcccttcttcatggcgtcgcttctgtgctgtggg 147
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||
Sbjct: 121320945 tggcccacatctaggcgatccccgactcccttcttcatggcatcgct-ctgtgctatgga 121320887
Query: 148 cccaagctggccgcctgcggcatcgtccttagcgcctggggagtgatcatgttgataatg 207
|||||||||||||||||| ||||| | |||||||||||||||||||| | ||||||
Sbjct: 121320886 cccaagctggccgcctgcagcatcacctttagcgcctggggagtgatcgt----ataatg 121320831
Query: 208 ctcggaatctttttcaatgtccactctgctgtgctcattgaagacgttcctttcacggag 267
|| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct: 121320830 atcagaatctttttcaatgtctactctgcggtgctcattgaggacgttcctttcacggag 121320771
Query: 268 aaagattttgagaatggcccccaggacatatacaagctctacgagcaagtcagctacaac 327
||||||||||||||||| |||||| ||||| |||| || |||||||||||||||| |||
Sbjct: 121320770 aaagattttgagaatggtccccagaacatacacaatctttacgagcaagtcagctgcaat 121320711
Query: 328 tgtttcatcgccgcgggcctttaccttctcctc 360
||||||| ||||||| || | |||| ||||||
Sbjct: 121320710 tgtttcactgccgcggaccctcacctcctcctc 121320678
Score = 230 bits (116), Expect = 8e-58
Identities = 221/255 (86%), Gaps = 7/255 (2%)
Strand = Plus / Minus
Query: 414 gcgctagagcaccactgcgtttccccgctccagccccctcttctatttaaaga------c 467
|||||||||| |||||||| ||||| ||||||||||| |||||||||||| |
Sbjct: 121320647 gcgctagagccccactgcgcgtcccctggccagccccctcctctatttaaagattctccc 121320588
Query: 468 cacccggtcaaccccgccccgccccgcccattctggagccctctgcggactgggtttccc 527
|||| |||||| |||||| ||| |||||||||||||||||||| ||||| ||||||
Sbjct: 121320587 gacccagtcaacgccgccctccccaccccattctggagccctctgcc-actggctttccc 121320529
Query: 528 tggctagagatggaatcccttgttcaccaacctcgggagactgcccccagtggagggagg 587
|||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 121320528 tggctagacatggaatcccttgttctccaagctcgggagactgcccccagtggagggagg 121320469
Query: 588 ctagggctggccgtcccctatccctctggccctcttgccatgtccggttccacaataaaa 647
|| |||||||| ||||||||| ||||||| || |||||| |||| |||||||||||||||
Sbjct: 121320468 ctggggctggcggtcccctattcctctgggccccttgccttgtctggttccacaataaaa 121320409
Query: 648 gagaaactgctctct 662
||||||||||||||
Sbjct: 121320408 aagaaactgctctct 121320394
>Sscrofa_ChrX
|| Length = 144288218
Score = 103 bits (52), Expect = 1e-19
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 164 gcggcatcgtccttagcgcctggggagtgatcatgttgataatgctcggaatctttttca 223
|||||||| |||| | ||||||||| ||||||||| |||||| || |||||||||||||
Sbjct: 109465778 gcggcatcatcctcaaagcctggggaatgatcatgtcgataattcttggaatctttttca 109465837
Query: 224 atgtccactctgctgtgctcattgaagacgttcctttcacggagaaagattttgagaatg 283
| ||||| || || |||||||| || ||| |||||||||| |||||||| ||||||||||
Sbjct: 109465838 acgtccattccgccgtgctcatggaggacattcctttcacagagaaagagtttgagaatg 109465897
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,576,950
Number of extensions: 1066
Number of successful extensions: 1066
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1061
Number of HSP's successfully gapped: 6
Length of query: 686
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 665
Effective length of database: 2,808,413,156
Effective search space: 1867594748740
Effective search space used: 1867594748740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)