Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013219
(1570 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039417.1| aspartyl aminopeptidase [Bos taurus]. 916 0.0
>ref|NP_001039417.1| aspartyl aminopeptidase [Bos taurus].
Length = 471
Score = 916 bits (2368), Expect = 0.0
Identities = 456/470 (97%), Positives = 464/470 (98%)
Frame = +3
Query: 54 MSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETESWDIKPESKY 233
MSGRARKEAVQAAARELLKFVN+SPSPFHAVAECRSRLLQAGF ELKETESWDIKPESKY
Sbjct: 1 MSGRARKEAVQAAARELLKFVNRSPSPFHAVAECRSRLLQAGFHELKETESWDIKPESKY 60
Query: 234 FLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVETYGGG 413
FLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVETYGGG
Sbjct: 61 FLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVETYGGG 120
Query: 414 IWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFGPNME 593
IWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFGPNME
Sbjct: 121 IWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFGPNME 180
Query: 594 MHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMELCLAD 773
MHLVPILAT++QEELEKGTPEPGPLNA D+RHHSVL SLLCAHLGLSPEDILEMELCLAD
Sbjct: 181 MHLVPILATSIQEELEKGTPEPGPLNATDERHHSVLTSLLCAHLGLSPEDILEMELCLAD 240
Query: 774 TQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRMIALYDNEEVG 953
TQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSC+APASLA DPHVRMIALYDNEEVG
Sbjct: 241 TQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCSAPASLAADPHVRMIALYDNEEVG 300
Query: 954 SESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHEENHR 1133
SESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHEENHR
Sbjct: 301 SESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHEENHR 360
Query: 1134 PLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCGTTIGPILASR 1313
PLFHKGPVIKVNSKQRYASNAVSEALIREVA +VGVPLQDLMVRNDSPCGTTIGPILASR
Sbjct: 361 PLFHKGPVIKVNSKQRYASNAVSEALIREVASSVGVPLQDLMVRNDSPCGTTIGPILASR 420
Query: 1314 LGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGFFELFPSLSRELLV 1463
LGLRVLDLGSPQLAMHSIRETACT+GVLQT+TLFKGFFELFPSLSR LLV
Sbjct: 421 LGLRVLDLGSPQLAMHSIRETACTTGVLQTITLFKGFFELFPSLSRSLLV 470
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,002,508
Number of extensions: 2291785
Number of successful extensions: 10916
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10865
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 416
Effective length of database: 14,140,958
Effective search space: 5882638528
Effective search space used: 5882638528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013219
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013219
(1570 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536081.2| PREDICTED: similar to Aspartyl aminopeptidase i... 927 0.0
Alignment gi|XP_863858.1| PREDICTED: similar to Aspartyl aminopeptidase i... 920 0.0
Alignment gi|XP_863839.1| PREDICTED: similar to Aspartyl aminopeptidase i... 788 0.0
Alignment gi|XP_850627.1| PREDICTED: similar to aspartyl aminopeptidase [... 182 8e-46
>ref|XP_536081.2| PREDICTED: similar to Aspartyl aminopeptidase isoform 1 [Canis
familiaris].
Length = 475
Score = 927 bits (2396), Expect = 0.0
Identities = 464/474 (97%), Positives = 469/474 (98%)
Frame = +3
Query: 42 MQVAMSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETESWDIKP 221
MQVAM+GRARKEAVQAAARELLKFVN+SPSPFHAVAECRSRLLQAGF ELKETESWDIKP
Sbjct: 1 MQVAMTGRARKEAVQAAARELLKFVNRSPSPFHAVAECRSRLLQAGFHELKETESWDIKP 60
Query: 222 ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET 401
ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET
Sbjct: 61 ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET 120
Query: 402 YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG 581
YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG
Sbjct: 121 YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG 180
Query: 582 PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL 761
PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL
Sbjct: 181 PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL 240
Query: 762 CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRMIALYDN 941
CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASL+ +PHVRMIALYDN
Sbjct: 241 CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLSSEPHVRMIALYDN 300
Query: 942 EEVGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE 1121
EEVGSESAQGAQSLLTELVLRRISAS QHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE
Sbjct: 301 EEVGSESAQGAQSLLTELVLRRISASSQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE 360
Query: 1122 ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCGTTIGPI 1301
ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVA NVGVPLQDLMVRNDSPCGTTIGPI
Sbjct: 361 ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANNVGVPLQDLMVRNDSPCGTTIGPI 420
Query: 1302 LASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGFFELFPSLSRELLV 1463
LASRLGLRVLDLGSPQLAMHSIRETACTSGVLQT+TLFKGFFELFPSLSR LLV
Sbjct: 421 LASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTITLFKGFFELFPSLSRNLLV 474
>ref|XP_863858.1| PREDICTED: similar to Aspartyl aminopeptidase isoform 3 [Canis
familiaris].
Length = 481
Score = 920 bits (2379), Expect = 0.0
Identities = 464/480 (96%), Positives = 469/480 (97%), Gaps = 6/480 (1%)
Frame = +3
Query: 42 MQVAMSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETESWDIKP 221
MQVAM+GRARKEAVQAAARELLKFVN+SPSPFHAVAECRSRLLQAGF ELKETESWDIKP
Sbjct: 1 MQVAMTGRARKEAVQAAARELLKFVNRSPSPFHAVAECRSRLLQAGFHELKETESWDIKP 60
Query: 222 ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET 401
ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET
Sbjct: 61 ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET 120
Query: 402 YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG 581
YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG
Sbjct: 121 YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG 180
Query: 582 PNMEMHLVPILATAVQEELEKGTPEPGPLNAA------DDRHHSVLMSLLCAHLGLSPED 743
PNMEMHLVPILATAVQEELEKGTPEPGPLNAA DDRHHSVLMSLLCAHLGLSPED
Sbjct: 181 PNMEMHLVPILATAVQEELEKGTPEPGPLNAAHASVLQDDRHHSVLMSLLCAHLGLSPED 240
Query: 744 ILEMELCLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRM 923
ILEMELCLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASL+ +PHVRM
Sbjct: 241 ILEMELCLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLSSEPHVRM 300
Query: 924 IALYDNEEVGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPN 1103
IALYDNEEVGSESAQGAQSLLTELVLRRISAS QHLTAFEEAIPKSYMISADMAHAVHPN
Sbjct: 301 IALYDNEEVGSESAQGAQSLLTELVLRRISASSQHLTAFEEAIPKSYMISADMAHAVHPN 360
Query: 1104 YLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCG 1283
YLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVA NVGVPLQDLMVRNDSPCG
Sbjct: 361 YLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANNVGVPLQDLMVRNDSPCG 420
Query: 1284 TTIGPILASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGFFELFPSLSRELLV 1463
TTIGPILASRLGLRVLDLGSPQLAMHSIRETACTSGVLQT+TLFKGFFELFPSLSR LLV
Sbjct: 421 TTIGPILASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTITLFKGFFELFPSLSRNLLV 480
>ref|XP_863839.1| PREDICTED: similar to Aspartyl aminopeptidase isoform 2 [Canis
familiaris].
Length = 434
Score = 788 bits (2034), Expect = 0.0
Identities = 400/421 (95%), Positives = 406/421 (96%), Gaps = 2/421 (0%)
Frame = +3
Query: 42 MQVAMSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETESWDIKP 221
MQVAM+GRARKEAVQAAARELLKFVN+SPSPFHAVAECRSRLLQAGF ELKETESWDIKP
Sbjct: 1 MQVAMTGRARKEAVQAAARELLKFVNRSPSPFHAVAECRSRLLQAGFHELKETESWDIKP 60
Query: 222 ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET 401
ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET
Sbjct: 61 ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET 120
Query: 402 YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG 581
YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG
Sbjct: 121 YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG 180
Query: 582 PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL 761
PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL
Sbjct: 181 PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL 240
Query: 762 CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRMIALYDN 941
CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASL+ +PHVRMIALYDN
Sbjct: 241 CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLSSEPHVRMIALYDN 300
Query: 942 EEVGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE 1121
EEVGSESAQGAQSLLTELVLRRISAS QHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE
Sbjct: 301 EEVGSESAQGAQSLLTELVLRRISASSQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE 360
Query: 1122 ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCGTT--IG 1295
ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVA NVG PL L+ S CG T +G
Sbjct: 361 ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANNVG-PL--LLPARISWCGMTRPVG 417
Query: 1296 P 1298
P
Sbjct: 418 P 418
Score = 59.3 bits (142), Expect = 1e-08
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = +1
Query: 1243 PCRISWCGMTPPAGPPLDLSWLLG*GCGCWI 1335
P RISWCGMT P GPP DLSWLLG CG WI
Sbjct: 404 PARISWCGMTRPVGPPSDLSWLLGWACGFWI 434
>ref|XP_850627.1| PREDICTED: similar to aspartyl aminopeptidase [Canis familiaris].
Length = 115
Score = 182 bits (462), Expect = 8e-46
Identities = 94/133 (70%), Positives = 106/133 (79%)
Frame = +3
Query: 1065 MISADMAHAVHPNYLDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVP 1244
MI+AD+AHAVHPN+ DKHEENHRPLFHKGPVI V A +VGVP
Sbjct: 1 MINADVAHAVHPNHPDKHEENHRPLFHKGPVIMV-------------------ANSVGVP 41
Query: 1245 LQDLMVRNDSPCGTTIGPILASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGF 1424
LQDLMVRN SPCGTTIGP+LASRLGL++LDLGSPQLAM+SI+ETACTSGVLQT++ F+GF
Sbjct: 42 LQDLMVRNASPCGTTIGPLLASRLGLQLLDLGSPQLAMYSIQETACTSGVLQTISPFQGF 101
Query: 1425 FELFPSLSRELLV 1463
ELFPSLS LLV
Sbjct: 102 LELFPSLSCNLLV 114
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,905,844
Number of extensions: 2363205
Number of successful extensions: 11184
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11129
Number of HSP's successfully gapped: 5
Length of query: 523
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 416
Effective length of database: 15,307,552
Effective search space: 6367941632
Effective search space used: 6367941632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013219
(1570 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172115.1| aspartyl aminopeptidase [Sus scrofa]. 942 0.0
>ref|NP_001172115.1| aspartyl aminopeptidase [Sus scrofa].
Length = 475
Score = 942 bits (2436), Expect = 0.0
Identities = 473/474 (99%), Positives = 473/474 (99%)
Frame = +3
Query: 42 MQVAMSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETESWDIKP 221
MQVAMSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETESWDIKP
Sbjct: 1 MQVAMSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETESWDIKP 60
Query: 222 ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET 401
ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET
Sbjct: 61 ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET 120
Query: 402 YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG 581
YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG
Sbjct: 121 YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG 180
Query: 582 PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL 761
PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL
Sbjct: 181 PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL 240
Query: 762 CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRMIALYDN 941
CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRMIALYDN
Sbjct: 241 CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRMIALYDN 300
Query: 942 EEVGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE 1121
EEVGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE
Sbjct: 301 EEVGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE 360
Query: 1122 ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCGTTIGPI 1301
ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCGTTIGPI
Sbjct: 361 ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCGTTIGPI 420
Query: 1302 LASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGFFELFPSLSRELLV 1463
LASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGFFELFPSLSR LLV
Sbjct: 421 LASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGFFELFPSLSRNLLV 474
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,994,788
Number of extensions: 1487768
Number of successful extensions: 7222
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7157
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 420
Effective length of database: 8,779,541
Effective search space: 3687407220
Effective search space used: 3687407220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013219
(1570 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001104301.1| aspartyl aminopeptidase isoform a [Mus muscu... 884 0.0
Alignment gi|NP_058574.3| aspartyl aminopeptidase isoform b [Mus musculus]. 880 0.0
>ref|NP_001104301.1| aspartyl aminopeptidase isoform a [Mus musculus].
Length = 475
Score = 884 bits (2284), Expect = 0.0
Identities = 433/474 (91%), Positives = 457/474 (96%)
Frame = +3
Query: 42 MQVAMSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETESWDIKP 221
MQ+AM+GRARKEA+QA ARELLKFVN+SPSPFH VAECRSRLLQAGFRELKETE WDI P
Sbjct: 1 MQMAMNGRARKEAIQATARELLKFVNRSPSPFHVVAECRSRLLQAGFRELKETEGWDIVP 60
Query: 222 ESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVET 401
E+KYFLTRNSS+IIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKR+SRRSQVG+ QVGVET
Sbjct: 61 ENKYFLTRNSSSIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRKSRRSQVGYHQVGVET 120
Query: 402 YGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFG 581
YGGGIWSTWFDRDLTLAGRVI+KCPTSGRLEQRLVH++RPILRIPHLAIHLQRN+NENFG
Sbjct: 121 YGGGIWSTWFDRDLTLAGRVIIKCPTSGRLEQRLVHIERPILRIPHLAIHLQRNINENFG 180
Query: 582 PNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMEL 761
PN E+HLVPILATAVQEELEKGTPEPGPL A D+RHHSVLMSLLC HLGLSP+ I+EMEL
Sbjct: 181 PNTEIHLVPILATAVQEELEKGTPEPGPLGATDERHHSVLMSLLCTHLGLSPDSIMEMEL 240
Query: 762 CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRMIALYDN 941
CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCA+PASLA DPHVRM+ LYDN
Sbjct: 241 CLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCASPASLARDPHVRMVTLYDN 300
Query: 942 EEVGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHE 1121
EEVGSESAQGAQSLLTEL+LRRISASPQ LTAFEEAIPKS+MISADMAHAVHPNY DKHE
Sbjct: 301 EEVGSESAQGAQSLLTELILRRISASPQRLTAFEEAIPKSFMISADMAHAVHPNYSDKHE 360
Query: 1122 ENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCGTTIGPI 1301
ENHRPLFHKGPVIKVNSKQRYASNAVSE++IREVA VGVPLQDLMVRNDSPCGTTIGPI
Sbjct: 361 ENHRPLFHKGPVIKVNSKQRYASNAVSESMIREVAGQVGVPLQDLMVRNDSPCGTTIGPI 420
Query: 1302 LASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGFFELFPSLSRELLV 1463
LASRLGLRVLDLGSPQLAMHSIRETACT+GVLQTLTLFKGFFELFPS+SR LLV
Sbjct: 421 LASRLGLRVLDLGSPQLAMHSIRETACTTGVLQTLTLFKGFFELFPSVSRNLLV 474
>ref|NP_058574.3| aspartyl aminopeptidase isoform b [Mus musculus].
Length = 473
Score = 880 bits (2274), Expect = 0.0
Identities = 431/472 (91%), Positives = 455/472 (96%)
Frame = +3
Query: 48 VAMSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETESWDIKPES 227
+AM+GRARKEA+QA ARELLKFVN+SPSPFH VAECRSRLLQAGFRELKETE WDI PE+
Sbjct: 1 MAMNGRARKEAIQATARELLKFVNRSPSPFHVVAECRSRLLQAGFRELKETEGWDIVPEN 60
Query: 228 KYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVETYG 407
KYFLTRNSS+IIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKR+SRRSQVG+ QVGVETYG
Sbjct: 61 KYFLTRNSSSIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRKSRRSQVGYHQVGVETYG 120
Query: 408 GGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNENFGPN 587
GGIWSTWFDRDLTLAGRVI+KCPTSGRLEQRLVH++RPILRIPHLAIHLQRN+NENFGPN
Sbjct: 121 GGIWSTWFDRDLTLAGRVIIKCPTSGRLEQRLVHIERPILRIPHLAIHLQRNINENFGPN 180
Query: 588 MEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDILEMELCL 767
E+HLVPILATAVQEELEKGTPEPGPL A D+RHHSVLMSLLC HLGLSP+ I+EMELCL
Sbjct: 181 TEIHLVPILATAVQEELEKGTPEPGPLGATDERHHSVLMSLLCTHLGLSPDSIMEMELCL 240
Query: 768 ADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRMIALYDNEE 947
ADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCA+PASLA DPHVRM+ LYDNEE
Sbjct: 241 ADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCASPASLARDPHVRMVTLYDNEE 300
Query: 948 VGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNYLDKHEEN 1127
VGSESAQGAQSLLTEL+LRRISASPQ LTAFEEAIPKS+MISADMAHAVHPNY DKHEEN
Sbjct: 301 VGSESAQGAQSLLTELILRRISASPQRLTAFEEAIPKSFMISADMAHAVHPNYSDKHEEN 360
Query: 1128 HRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCGTTIGPILA 1307
HRPLFHKGPVIKVNSKQRYASNAVSE++IREVA VGVPLQDLMVRNDSPCGTTIGPILA
Sbjct: 361 HRPLFHKGPVIKVNSKQRYASNAVSESMIREVAGQVGVPLQDLMVRNDSPCGTTIGPILA 420
Query: 1308 SRLGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGFFELFPSLSRELLV 1463
SRLGLRVLDLGSPQLAMHSIRETACT+GVLQTLTLFKGFFELFPS+SR LLV
Sbjct: 421 SRLGLRVLDLGSPQLAMHSIRETACTTGVLQTLTLFKGFFELFPSVSRNLLV 472
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,040,142
Number of extensions: 1866716
Number of successful extensions: 7955
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7845
Number of HSP's successfully gapped: 2
Length of query: 523
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 417
Effective length of database: 12,433,743
Effective search space: 5184870831
Effective search space used: 5184870831
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013219
(1570 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036232.2| aspartyl aminopeptidase [Homo sapiens]. 892 0.0
>ref|NP_036232.2| aspartyl aminopeptidase [Homo sapiens].
Length = 485
Score = 892 bits (2306), Expect = 0.0
Identities = 441/479 (92%), Positives = 461/479 (96%)
Frame = +3
Query: 27 PTRQAMQVAMSGRARKEAVQAAARELLKFVNQSPSPFHAVAECRSRLLQAGFRELKETES 206
PTR AMQVAM+G+ARKEAVQ AA+ELLKFVN+SPSPFHAVAECR+RLLQAGF ELKETE
Sbjct: 6 PTRGAMQVAMNGKARKEAVQTAAKELLKFVNRSPSPFHAVAECRNRLLQAGFSELKETEK 65
Query: 207 WDIKPESKYFLTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQ 386
W+IKPESKYF+TRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQ
Sbjct: 66 WNIKPESKYFMTRNSSTIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQ 125
Query: 387 VGVETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNV 566
VGVETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQ+LVHV+RPILRIPHLAIHLQRN+
Sbjct: 126 VGVETYGGGIWSTWFDRDLTLAGRVIVKCPTSGRLEQQLVHVERPILRIPHLAIHLQRNI 185
Query: 567 NENFGPNMEMHLVPILATAVQEELEKGTPEPGPLNAADDRHHSVLMSLLCAHLGLSPEDI 746
NENFGPN EMHLVPILATA+QEELEKGTPEPGPLNA D+RHHSVLMSLLCAHLGLSP+DI
Sbjct: 186 NENFGPNTEMHLVPILATAIQEELEKGTPEPGPLNAVDERHHSVLMSLLCAHLGLSPKDI 245
Query: 747 LEMELCLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAAPASLAVDPHVRMI 926
+EMELCLADTQPAVLGGAY+EFIFAPRLDNLHSCFCALQALIDSCA P SLA +PHVRM+
Sbjct: 246 VEMELCLADTQPAVLGGAYDEFIFAPRLDNLHSCFCALQALIDSCAGPGSLATEPHVRMV 305
Query: 927 ALYDNEEVGSESAQGAQSLLTELVLRRISASPQHLTAFEEAIPKSYMISADMAHAVHPNY 1106
LYDNEEVGSESAQGAQSLLTELVLRRISAS QH TAFEEAIPKS+MISADMAHAVHPNY
Sbjct: 306 TLYDNEEVGSESAQGAQSLLTELVLRRISASCQHPTAFEEAIPKSFMISADMAHAVHPNY 365
Query: 1107 LDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVARNVGVPLQDLMVRNDSPCGT 1286
LDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVA V VPLQDLMVRND+PCGT
Sbjct: 366 LDKHEENHRPLFHKGPVIKVNSKQRYASNAVSEALIREVANKVKVPLQDLMVRNDTPCGT 425
Query: 1287 TIGPILASRLGLRVLDLGSPQLAMHSIRETACTSGVLQTLTLFKGFFELFPSLSRELLV 1463
TIGPILASRLGLRVLDLGSPQLAMHSIRE ACT+GVLQTLTLFKGFFELFPSLS LLV
Sbjct: 426 TIGPILASRLGLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFFELFPSLSHNLLV 484
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,258,641
Number of extensions: 2283097
Number of successful extensions: 10237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10167
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 416
Effective length of database: 14,770,016
Effective search space: 6144326656
Effective search space used: 6144326656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013219
(1570 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 333 2e-88
>Sscrofa_Chr15
|| Length = 157681621
Score = 333 bits (168), Expect = 2e-88
Identities = 171/172 (99%)
Strand = Plus / Minus
Query: 1248 caggatctcatggtgcggaatgactccccctgcgggaccaccattggacctatcttggct 1307
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134425812 caggatctcatggtccggaatgactccccctgcgggaccaccattggacctatcttggct 134425753
Query: 1308 tctcggctagggctgcgggtgctggatttaggcagcccccagctggccatgcactccatc 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134425752 tctcggctagggctgcgggtgctggatttaggcagcccccagctggccatgcactccatc 134425693
Query: 1368 cgggagacagcctgcacttctggagtgctccagaccctcactctcttcaagg 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134425692 cgggagacagcctgcacttctggagtgctccagaccctcactctcttcaagg 134425641
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 946 aggtggggtcagagagcgcgcagggcgctcagtcactgctgacggagctggtgctgcgga 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134432267 aggtggggtcagagagcgcgcagggcgctcagtcactgctgacggagctggtgctgcgga 134432208
Query: 1006 ggatctcggcgtcgccccagcacctgacagccttcgaggaagccatccccaagtcctaca 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134432207 ggatctcggcgtcgccccagcacctgacagccttcgaggaagccatccccaagtcctaca 134432148
Query: 1066 tgatcagcgcagacatggcccacgccgtgcaccccaactacctg 1109
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134432147 tgatcagcgcagacatggcccacgccgtgcaccccaactacctg 134432104
Score = 256 bits (129), Expect = 3e-65
Identities = 132/133 (99%)
Strand = Plus / Minus
Query: 469 agtgccctacctcaggccggctggagcagcggctggtgcacgtggaccggcccattcttc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 134435803 agtgccctacctcaggccggctggagcagcggctggtgcacgtggaccggcccgttcttc 134435744
Query: 529 gcatcccacacctggccatccacctgcagcgaaatgtcaatgagaacttcgggcccaaca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134435743 gcatcccacacctggccatccacctgcagcgaaatgtcaatgagaacttcgggcccaaca 134435684
Query: 589 tggagatgcactt 601
|||||||||||||
Sbjct: 134435683 tggagatgcactt 134435671
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 344 ggtgaaacggcggtctcgccgcagccaggtgggcttccagcaggttggtgtggagaccta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134436132 ggtgaaacggcggtctcgccgcagccaggtgggcttccagcaggttggtgtggagaccta 134436073
Query: 404 cggtggtgggatctggagcacttggtttgaccgtgacctgaccttggctggacgtgtcat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134436072 cggtggtgggatctggagcacttggtttgaccgtgacctgaccttggctggacgtgtcat 134436013
Query: 464 tgtcaag 470
|||||||
Sbjct: 134436012 tgtcaag 134436006
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 678 gatgaccggcaccactcagtcctcatgtcccttctctgcgcccatctggggctgagcccg 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134435220 gatgaccggcaccactcagtcctcatgtcccttctctgcgcccatctggggctgagcccg 134435161
Query: 738 gaggatatcttggagatggagctgtgtctcgcggacactcagcccgcggt 787
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134435160 gaggatatcttggagatggagctgtgtctcgcggacactcagcccgcggt 134435111
Score = 208 bits (105), Expect = 7e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1147 agggccctgtgatcaaggtgaacagcaagcagcgctacgcctccaacgcagtttcagagg 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134431588 agggccctgtgatcaaggtgaacagcaagcagcgctacgcctccaacgcagtttcagagg 134431529
Query: 1207 ctctcatccgagaggtggcccgcaatgtcggggtgcccctgcagg 1251
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134431528 ctctcatccgagaggtggcccgcaatgtcggggtgcccctgcagg 134431484
Score = 190 bits (96), Expect = 2e-45
Identities = 128/135 (94%), Gaps = 3/135 (2%)
Strand = Plus / Minus
Query: 1417 agggcttctttgagctgttcccttctctgagccgggaactcctagtgnattgagggctct 1476
||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||
Sbjct: 134425278 agggcttctttgagctgttcccttctctgagccggaacctcctagtggattgaggcctct 134425219
Query: 1477 cgggaaagacttctctcgcacttgaggtgggaagttctcagctgagctgaagctgggatt 1536
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 134425218 cgg-aaagacttctctcgcacttgaggtgggaagttctcagctgagctgaagctgg-att 134425161
Query: 1537 at-aaagtggatttt 1550
|| ||||||||||||
Sbjct: 134425160 attaaagtggatttt 134425146
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 46 aggtggccatgagcggcagggcccgcaaagaggcggtgcaagccgcggcccgggaactcc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134437170 aggtggccatgagcggcagggcccgcaaagaggcggtgcaagccgcggcccgggaactcc 134437111
Query: 106 tcaagtttgtgaaccagagcccctctcctttccacg 141
||||||||||||||||||||||||||||||||||||
Sbjct: 134437110 tcaagtttgtgaaccagagcccctctcctttccacg 134437075
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 141 gcggtggccgagtgccgcagccgcctcctccaggctggcttccgtgaactcaaggagacg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134436970 gcggtggccgagtgccgcagccgcctcctccaggctggcttccgtgaactcaaggagacg 134436911
Query: 201 gagagctgggatatcaagccggagagtaag 230
||||||||||||||||||||||||||||||
Sbjct: 134436910 gagagctgggatatcaagccggagagtaag 134436881
Score = 168 bits (85), Expect = 6e-39
Identities = 88/89 (98%)
Strand = Plus / Minus
Query: 861 caggctttgatcgattcctgcgcagcccctgcctccctggcagtggatccccatgtacgc 920
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 134433345 caggctttgatcgattcctgcgcagcccctgcctccctggcagtggatccccatgtgcgc 134433286
Query: 921 atgatcgccctctacgacaacgaagaggt 949
|||||||||||||||||||||||||||||
Sbjct: 134433285 atgatcgccctctacgacaacgaagaggt 134433257
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 785 ggtcctgggcggtgcctatgaggagttcatctttgcccctcgactggacaatcttcacag 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134434416 ggtcctgggcggtgcctatgaggagttcatctttgcccctcgactggacaatcttcacag 134434357
Query: 845 ctgcttctgtgccctgcagg 864
||||||||||||||||||||
Sbjct: 134434356 ctgcttctgtgccctgcagg 134434337
Score = 155 bits (78), Expect = 9e-35
Identities = 106/110 (96%), Gaps = 4/110 (3%)
Strand = Plus / Minus
Query: 237 ctgaccaggaattcctccaccatcatcgcttttgctgtgggaggccagtatgttcctggc 296
|||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 134436443 ctgaccaggaattcctccaccatcatcgcttt-gctgtgg-aggccagtatgt-cctggc 134436387
Query: 297 aatggtttcagcctcatcggggcccacacggacagcccctgcctccgggt 346
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134436386 aatg-tttcagcctcatcggggcccacacggacagcccctgcctccgggt 134436338
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 602 agtccccattcttgccacagcagtccaggaggagctggagaaggggactcctgagccagg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134435407 agtccccattcttgccacagcagtccaggaggagctggagaaggggactcctgagccagg 134435348
Query: 662 ccctctcaatgctgcag 678
|||||||||||||||||
Sbjct: 134435347 ccctctcaatgctgcag 134435331
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 1 gcacgggccgggcgggcagacgtaggcccacgcgtcaggccatgcaggt 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134437853 gcacgggccgggcgggcagacgtaggcccacgcgtcaggccatgcaggt 134437805
Score = 81.8 bits (41), Expect = 1e-12
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 1109 ggacaagcatgaggagaaccaccggcccttattccacaagg 1149
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 134431752 ggacaagcatgaggagaaccaccggcccttattccacaagg 134431712
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,223,758
Number of extensions: 271
Number of successful extensions: 271
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 15
Length of query: 1570
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1549
Effective length of database: 2,808,413,156
Effective search space: 4350231978644
Effective search space used: 4350231978644
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)