Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013220
(1234 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039876.1| keratin, type II cytoskeletal 7 [Bos taurus]. 441 e-162
Alignment gi|XP_002687306.1| PREDICTED: keratin 6A-like [Bos taurus]. 298 e-109
Alignment gi|NP_001179264.1| keratin, type II cuticular Hb4 [Bos taurus]. 275 e-102
Alignment gi|XP_002687298.1| PREDICTED: keratin 84 [Bos taurus]. 275 e-102
Alignment gi|XP_002687307.1| PREDICTED: mCG144546-like [Bos taurus]. 266 5e-98
Alignment gi|NP_001069438.1| keratin, type II cytoskeletal 71 [Bos taurus]. 265 9e-98
Alignment gi|NP_001069412.1| keratin, type II cytoskeletal 72 [Bos taurus]. 270 2e-96
Alignment gi|XP_002687292.1| PREDICTED: keratin 6A-like [Bos taurus]. 263 3e-96
Alignment gi|NP_001104574.1| keratin, type II cytoskeletal 73 [Bos taurus]. 265 7e-95
Alignment gi|NP_001076085.1| keratin, type II cuticular Hb2 [Bos taurus]. 246 6e-90
>ref|NP_001039876.1| keratin, type II cytoskeletal 7 [Bos taurus].
Length = 466
Score = 441 bits (1133), Expect(2) = e-162
Identities = 235/288 (81%), Positives = 246/288 (85%)
Frame = +1
Query: 52 MSVHFSSQVFSSRSAAFPGRGTQGRLSSARLGGLXXXXXXXLYGLXXXXXXXXXXXXYGA 231
MS+HF SQVFSSRSAAFPGRGTQ RLSS R GG LYGL YGA
Sbjct: 1 MSLHFGSQVFSSRSAAFPGRGTQVRLSSVRPGGFGSSSS--LYGLGASRPRVAARSSYGA 58
Query: 232 PVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNK 411
PVG GIR VTINQ+LLTPLQVDIDPSI IKTLNNKFASFIDKVRFLEQQNK
Sbjct: 59 PVGTGIRAVTINQSLLTPLQVDIDPSIQQVRQEEREQIKTLNNKFASFIDKVRFLEQQNK 118
Query: 412 LLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFK 591
LLETKWALLQEQKS KS+RLPGIFEAQIAGLRKQLEALQLDGGRLE ELR+ QD+VEDFK
Sbjct: 119 LLETKWALLQEQKSAKSNRLPGIFEAQIAGLRKQLEALQLDGGRLEVELRNMQDVVEDFK 178
Query: 592 NKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQ 771
NKYEDEINHRTAAENEFVVLKKDVD+AYMNKVELEAKVD LNDEI+FLRTLYE+ELKELQ
Sbjct: 179 NKYEDEINHRTAAENEFVVLKKDVDVAYMNKVELEAKVDTLNDEINFLRTLYEQELKELQ 238
Query: 772 SKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
S+VSDTSVVLSMDN+RSLDLD IIAEVKAQYEEIANRSRAEAEA Y+T
Sbjct: 239 SEVSDTSVVLSMDNNRSLDLDSIIAEVKAQYEEIANRSRAEAEACYQT 286
Score = 149 bits (377), Expect(2) = e-162
Identities = 77/106 (72%), Positives = 86/106 (81%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
KFETLQAQAGKHGDDL+NTRNEIA+MNRAVQRLQAEID++KNQR+KLEAAIA+ E RGEL
Sbjct: 287 KFETLQAQAGKHGDDLQNTRNEIADMNRAVQRLQAEIDSVKNQRSKLEAAIADAEQRGEL 346
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D QDM RQLREYQ+LMN+KLALDIEIAT
Sbjct: 347 AVKDARAKQEDLEAALQKAKQDMTRQLREYQELMNVKLALDIEIAT 392
>ref|XP_002687306.1| PREDICTED: keratin 6A-like [Bos taurus].
Length = 635
Score = 298 bits (762), Expect(2) = e-109
Identities = 158/229 (68%), Positives = 185/229 (80%), Gaps = 3/229 (1%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI+EVT+NQ+LL PL V+IDP I IKTLNNKFASFIDKVRFLEQQNK+LET
Sbjct: 154 GIQEVTVNQSLLQPLNVEIDPQIGQVKTQEREQIKTLNNKFASFIDKVRFLEQQNKVLET 213
Query: 424 KWALLQEQKS---TKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKN 594
KW+LLQ+Q + T ++ L +FE I LR L+++ + GRL++ELR+ QD+VEDFK
Sbjct: 214 KWSLLQQQGTHPITGTNNLEPLFENYINSLRSYLDSILGERGRLDSELRNMQDLVEDFKK 273
Query: 595 KYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQS 774
KYEDEIN RTAAENEFV LKKDVD AYMNKVEL+AKVDAL DEI+FL TLY+ EL ++QS
Sbjct: 274 KYEDEINKRTAAENEFVTLKKDVDAAYMNKVELQAKVDALTDEINFLTTLYDMELSQMQS 333
Query: 775 KVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSL 921
VSDTSVVLSMDN+RSLDLD IIAEVKAQYEEIA RS+AEAEA Y+T L
Sbjct: 334 HVSDTSVVLSMDNNRSLDLDSIIAEVKAQYEEIAQRSKAEAEALYQTKL 382
Score = 117 bits (294), Expect(2) = e-109
Identities = 59/110 (53%), Positives = 78/110 (70%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K LQ AG+HGDDL++T++EI+E+NR +QRL+AEI+N+K Q AKL++AIAE E
Sbjct: 377 LYQTKLGELQTTAGRHGDDLKSTKSEISELNRVIQRLRAEIENVKKQIAKLQSAIAEAEQ 436
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGELA +D D+AR LR+YQ+LMN+KLALD+EIAT
Sbjct: 437 RGELALKDANAKLQELQAALQQAKDDLARLLRDYQELMNVKLALDVEIAT 486
>ref|NP_001179264.1| keratin, type II cuticular Hb4 [Bos taurus].
Length = 593
Score = 275 bits (703), Expect(2) = e-102
Identities = 141/236 (59%), Positives = 173/236 (73%)
Frame = +1
Query: 226 GAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQ 405
G P I VT+NQ+LLTPL ++IDP+ IKTLNNKFASFIDKVRFLEQQ
Sbjct: 122 GGPAAPSITAVTVNQSLLTPLNLEIDPNAQRVKRDEKEQIKTLNNKFASFIDKVRFLEQQ 181
Query: 406 NKLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVED 585
NKLLETKW LQEQK KS+ P +FE I LR+QL+ + D RLEAE QD++E
Sbjct: 182 NKLLETKWNFLQEQKCAKSNLEP-LFENYITNLRRQLDVVNSDQARLEAERNHMQDVLEG 240
Query: 586 FKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKE 765
FK KYE+E+ R +AENEFV LKKDVD A+++K +LEA VD L EI FL+TLYE E++
Sbjct: 241 FKKKYEEEVGLRASAENEFVALKKDVDTAFLSKADLEANVDTLIQEIDFLKTLYEAEIQL 300
Query: 766 LQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLRPSR 933
LQS +S+TSV++ MDNSR L++DGIIA++KAQYEEIA RSRA+AEAWY+T R
Sbjct: 301 LQSHISETSVIVKMDNSRDLNVDGIIADIKAQYEEIARRSRADAEAWYQTKYEEMR 356
Score = 115 bits (289), Expect(2) = e-102
Identities = 59/106 (55%), Positives = 76/106 (71%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E ++ AG+H D+LRNTR+E+ E+NR +QRL+AEI++ K QR KLEAA+AE E +GE
Sbjct: 351 KYEEMRVTAGQHCDNLRNTRDEMNELNRLIQRLKAEIEHAKAQRCKLEAAVAEAEQQGEA 410
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A D QDMARQL+EYQ+LMN+KLALDIEIAT
Sbjct: 411 ALNDAKCKLAELEGALQQAKQDMARQLKEYQELMNVKLALDIEIAT 456
>ref|XP_002687298.1| PREDICTED: keratin 84 [Bos taurus].
Length = 593
Score = 275 bits (703), Expect(2) = e-102
Identities = 141/236 (59%), Positives = 173/236 (73%)
Frame = +1
Query: 226 GAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQ 405
G P I VT+NQ+LLTPL ++IDP+ IKTLNNKFASFIDKVRFLEQQ
Sbjct: 122 GGPAAPSITAVTVNQSLLTPLNLEIDPNAQRVKRDEKEQIKTLNNKFASFIDKVRFLEQQ 181
Query: 406 NKLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVED 585
NKLLETKW LQEQK KS+ P +FE I LR+QL+ + D RLEAE QD++E
Sbjct: 182 NKLLETKWNFLQEQKCAKSNLEP-LFENYITNLRRQLDVVNSDQARLEAERNHMQDVLEG 240
Query: 586 FKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKE 765
FK KYE+E+ R +AENEFV LKKDVD A+++K +LEA VD L EI FL+TLYE E++
Sbjct: 241 FKKKYEEEVGLRASAENEFVALKKDVDTAFLSKADLEANVDTLIQEIDFLKTLYEAEIQL 300
Query: 766 LQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLRPSR 933
LQS +S+TSV++ MDNSR L++DGIIA++KAQYEEIA RSRA+AEAWY+T R
Sbjct: 301 LQSHISETSVIVKMDNSRDLNVDGIIADIKAQYEEIARRSRADAEAWYQTKYEEMR 356
Score = 115 bits (289), Expect(2) = e-102
Identities = 59/106 (55%), Positives = 76/106 (71%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E ++ AG+H D+LRNTR+E+ E+NR +QRL+AEI++ K QR KLEAA+AE E +GE
Sbjct: 351 KYEEMRVTAGQHCDNLRNTRDEMNELNRLIQRLKAEIEHAKAQRCKLEAAVAEAEQQGEA 410
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A D QDMARQL+EYQ+LMN+KLALDIEIAT
Sbjct: 411 ALNDAKCKLAELEGALQQAKQDMARQLKEYQELMNVKLALDIEIAT 456
>ref|XP_002687307.1| PREDICTED: mCG144546-like [Bos taurus].
Length = 643
Score = 266 bits (679), Expect(2) = 5e-98
Identities = 146/239 (61%), Positives = 178/239 (74%), Gaps = 6/239 (2%)
Frame = +1
Query: 223 YGAPV-GAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLE 399
YG+ V GI+EVTINQ+LL PL V+IDP I IK LNNKFASF+DKVRFLE
Sbjct: 131 YGSSVCPGGIQEVTINQSLLQPLNVEIDPQIGQVKAQEREQIKILNNKFASFMDKVRFLE 190
Query: 400 QQNKLLETKWALLQEQ-----KSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRS 564
QQNK+LETKW LLQ+ S S L +FE+ I L +QL++ + G LE ELR+
Sbjct: 191 QQNKVLETKWDLLQQWTAGLGSSLGSGGLEPLFESYINCLCRQLDSALAEKGNLEGELRN 250
Query: 565 TQDIVEDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTL 744
QD+VEDF+ KYEDEIN TAAENEFV LKKD+D A+MNKVEL+AKVD L DE++ LRTL
Sbjct: 251 MQDLVEDFRKKYEDEINKPTAAENEFVGLKKDMDAAFMNKVELQAKVDGLTDELNSLRTL 310
Query: 745 YEEELKELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSL 921
YE EL ++Q+ ++D SVVLSMDN+ LDLD II+EVKAQYE+IA +S+AEAEA Y+T L
Sbjct: 311 YETELTQMQNHLNDMSVVLSMDNNCCLDLDSIISEVKAQYEDIAQKSKAEAEALYQTKL 369
Score = 111 bits (278), Expect(2) = 5e-98
Identities = 56/110 (50%), Positives = 75/110 (68%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K L+ +AG+HGDDL+NT+NEI E+NR + RL+AEI+N+K Q A L+ AIA+ E
Sbjct: 364 LYQTKLGELENKAGRHGDDLKNTKNEIMELNRMIPRLRAEIENVKKQNANLQNAIADAEQ 423
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGELA +D D+A+ +R+YQ+LMNIKLALD+EIAT
Sbjct: 424 RGELALKDVNAKIQELQDALQQAKDDLAQLVRDYQELMNIKLALDVEIAT 473
>ref|NP_001069438.1| keratin, type II cytoskeletal 71 [Bos taurus].
Length = 525
Score = 265 bits (678), Expect(2) = 9e-98
Identities = 136/228 (59%), Positives = 174/228 (76%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++LET
Sbjct: 103 GIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 162
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + + L I E I+ LRKQLE L D RL++ELRS +D+VED+K +Y
Sbjct: 163 KWELLQQLDLNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRSVRDVVEDYKKRY 222
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RTAAENEFV+LKKDVD AY NKVEL+AKVD+++ EI F + LYE E+ ++QS +
Sbjct: 223 EEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFKCLYEAEIAQIQSHI 282
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SD SV+LSMDN+R L+LD II EV+AQYE+IA +S+AEAEA Y+T +
Sbjct: 283 SDMSVILSMDNNRDLNLDSIIDEVRAQYEDIALKSKAEAEALYQTKFQ 330
Score = 111 bits (277), Expect(2) = 9e-98
Identities = 53/110 (48%), Positives = 77/110 (70%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L KF+ LQ AG+HGDDL+NT+NEI+E+ R +QR+++EI+N+K Q + LE AIA+ E
Sbjct: 324 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQ 383
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR +REYQ+LM++KLALD+EIAT
Sbjct: 384 RGDNALKDARAKLDELEAALHQSKEELARMMREYQELMSLKLALDMEIAT 433
>ref|NP_001069412.1| keratin, type II cytoskeletal 72 [Bos taurus].
Length = 524
Score = 270 bits (690), Expect(2) = 2e-96
Identities = 141/228 (61%), Positives = 177/228 (77%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL+PL V++DP I IK LNNKFASFIDKVRFLEQQN++L T
Sbjct: 108 GIPQVTVNKSLLSPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLGT 167
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + + L I E + LRKQLE L D RL++ELRS +D+VE++K +Y
Sbjct: 168 KWELLQQLDLNNCKNNLEPILEGYTSNLRKQLEMLSGDRVRLDSELRSMRDVVEEYKKRY 227
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E EIN RTAAENEFV+LKKDVD AYMNKVEL+AKVD+L DEI FL+ LYE E+ +LQS +
Sbjct: 228 EVEINRRTAAENEFVMLKKDVDAAYMNKVELQAKVDSLTDEIKFLKCLYEGEIAQLQSHI 287
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SDTSV+LSMDN+R LDLD IIA+V+AQYEEIA +S+AEAEA Y+T ++
Sbjct: 288 SDTSVILSMDNNRDLDLDSIIAQVRAQYEEIALKSKAEAEALYQTKIQ 335
Score = 102 bits (254), Expect(2) = 2e-96
Identities = 51/110 (46%), Positives = 74/110 (67%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K + LQA AG+HGDDL+ T+ EI+++NR +QR+++EI N+K Q + LE AIA+ E
Sbjct: 329 LYQTKIQELQATAGQHGDDLKLTKAEISDLNRMIQRIRSEIGNVKKQCSNLEMAIADAEQ 388
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR +REYQ+LM+ KLALD+EIAT
Sbjct: 389 RGDCALKDARAKLDELDAALLQAKEELARMMREYQELMSTKLALDMEIAT 438
>ref|XP_002687292.1| PREDICTED: keratin 6A-like [Bos taurus].
Length = 606
Score = 263 bits (671), Expect(2) = 3e-96
Identities = 138/232 (59%), Positives = 179/232 (77%), Gaps = 2/232 (0%)
Frame = +1
Query: 226 GAPV-GAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQ 402
G PV GI+EVTINQ+LL PL V+IDP I IK+LNN+FASFIDKVRFLEQ
Sbjct: 140 GFPVCPGGIQEVTINQSLLQPLNVEIDPEIQKIKSREREQIKSLNNQFASFIDKVRFLEQ 199
Query: 403 QNKLLETKWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIV 579
QN++L+TKW LLQ+ ST++ L +FEA I+ LR+ ++ L+ D RL++EL++ QD+V
Sbjct: 200 QNQVLQTKWELLQQINTSTRTYSLEPLFEAYISRLRRTVDQLKSDQSRLDSELKNMQDLV 259
Query: 580 EDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEEL 759
ED++ KYEDEIN RT AENEFV +K DVD AY+ KV+L+AK D L EI F +TLY+ EL
Sbjct: 260 EDYRRKYEDEINKRTNAENEFVGIKNDVDAAYITKVDLQAKFDNLLQEIDFYKTLYQAEL 319
Query: 760 KELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
++Q+ +SDT+V+LSMDN+R+LDL+ II EVKAQYEEIA RS+AEAEA Y+T
Sbjct: 320 SQMQTHISDTNVILSMDNNRNLDLNSIIDEVKAQYEEIAQRSKAEAEALYQT 371
Score = 108 bits (271), Expect(2) = 3e-96
Identities = 55/110 (50%), Positives = 75/110 (68%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K+E LQ AG+HGD L+NT+ EI+E+NR +QRL++EID++K Q + L+ AI++ E
Sbjct: 368 LYQTKYEELQITAGQHGDSLKNTKVEISELNRVIQRLRSEIDSVKKQISSLQQAISDAEQ 427
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE A +D +DMAR LR+YQ+LMN KLALD+EIAT
Sbjct: 428 RGENAIKDAQNKLNELEDALQKAKEDMARLLRDYQELMNTKLALDVEIAT 477
>ref|NP_001104574.1| keratin, type II cytoskeletal 73 [Bos taurus].
Length = 540
Score = 265 bits (677), Expect(2) = 7e-95
Identities = 139/228 (60%), Positives = 173/228 (75%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +V +N++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++L T
Sbjct: 103 GIHQVIVNKSLLAPLNVELDPEIQKVCAQEREQIKALNNKFASFIDKVRFLEQQNQVLGT 162
Query: 424 KWALLQEQKSTK-SSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+Q + L I E I+ LRKQLE L D RL++ELRS +D+VED+K +Y
Sbjct: 163 KWELLQQQDLDNCKNNLEPILEGYISNLRKQLEMLSGDRVRLDSELRSMRDVVEDYKKRY 222
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RT AENEFVVLKKDVD AYM+KVEL+AKVDAL EI F LYE E+ ++QS +
Sbjct: 223 EEEINKRTTAENEFVVLKKDVDAAYMSKVELQAKVDALEREIKFFTCLYEGEIAQMQSHI 282
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SDTSV+LSMDN+R+LDL+ IIAEV+AQYE+IA +S+AEAEA Y+T +
Sbjct: 283 SDTSVILSMDNNRNLDLNSIIAEVRAQYEDIALKSKAEAEALYQTKFQ 330
Score = 102 bits (253), Expect(2) = 7e-95
Identities = 51/110 (46%), Positives = 72/110 (65%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L KF+ LQ AG+HGDDL++T+NEIAE+ R +QRL++E +++K Q + LE AI + E
Sbjct: 324 LYQTKFQELQLAAGRHGDDLKHTKNEIAELTRLIQRLRSETESVKKQCSNLETAITDAEQ 383
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG A +D +++AR + EYQ+LM+ KLALDIEIAT
Sbjct: 384 RGHCALKDAQAKLDELEAALLQAKEELARMMCEYQELMSTKLALDIEIAT 433
>ref|NP_001076085.1| keratin, type II cuticular Hb2 [Bos taurus].
Length = 514
Score = 246 bits (629), Expect(2) = 6e-90
Identities = 128/225 (56%), Positives = 166/225 (73%)
Frame = +1
Query: 241 AGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLE 420
A I VTIN++LL PL++++DP++ IK LNN+FASFI+KVRFLEQ+NKLLE
Sbjct: 88 ACIAPVTINESLLVPLELEVDPTVQRVKRDEKEQIKCLNNRFASFINKVRFLEQKNKLLE 147
Query: 421 TKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
TKW +Q+QK SS + IFE I+ LR+QL+ L D RLE+E D +E +K KY
Sbjct: 148 TKWNFMQQQKCC-SSNIEPIFEGYISTLRRQLDFLTGDRDRLESEFHCLHDTLEGYKKKY 206
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+E++ R AENEFV LKKDVD A++ +LE V+AL EI+FL+TLY EE LQS++
Sbjct: 207 EEELSLRPTAENEFVALKKDVDTAFLINSDLEINVEALIHEINFLKTLYTEETNLLQSQI 266
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
SDTSV + MDNSR LD DGIIA++KAQY+EIANRS+AEAEAWY++
Sbjct: 267 SDTSVTVKMDNSRELDTDGIIAQIKAQYDEIANRSKAEAEAWYQS 311
Score = 103 bits (258), Expect(2) = 6e-90
Identities = 53/107 (49%), Positives = 70/107 (65%)
Frame = +3
Query: 912 NKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGE 1091
+++E LQ AG H D+LRN +NEI E+N+ +QRLQ +I+N+K QR KLEAA+ + E +GE
Sbjct: 311 SRYEELQLTAGNHCDNLRNRKNEILEINKLIQRLQQDIENVKAQRCKLEAAVTQAEQQGE 370
Query: 1092 LAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A D QDMA L+EYQ++MN KL LDIEIAT
Sbjct: 371 AALNDAKCKLAGLEEALQKAKQDMACLLKEYQEVMNSKLGLDIEIAT 417
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,333,965
Number of extensions: 724785
Number of successful extensions: 4290
Number of sequences better than 1.0e-05: 103
Number of HSP's gapped: 4039
Number of HSP's successfully gapped: 185
Length of query: 411
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,207,134
Effective search space: 4347383004
Effective search space used: 4347383004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013220
(1234 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534795.2| PREDICTED: similar to Keratin, type II cytoskel... 381 e-146
Alignment gi|XP_543650.2| PREDICTED: similar to cytokeratin type II [Cani... 311 e-115
Alignment gi|XP_850008.1| PREDICTED: similar to Keratin, type II cytoskel... 302 e-111
Alignment gi|XP_860457.1| PREDICTED: similar to Keratin, type II cytoskel... 302 e-111
Alignment gi|NP_001014299.1| keratin, type II cytoskeletal 2 oral [Canis ... 279 e-104
Alignment gi|XP_543652.1| PREDICTED: similar to Keratin, type II cuticula... 269 e-100
Alignment gi|XP_860523.1| PREDICTED: similar to Keratin, type II cuticula... 269 e-100
Alignment gi|XP_850012.1| PREDICTED: similar to keratin 6 irs3 [Canis fam... 273 5e-99
Alignment gi|NP_001003392.1| keratin, type II cytoskeletal 1 [Canis lupus... 274 1e-98
Alignment gi|NP_001183958.1| keratin 71 [Canis lupus familiaris]. 268 2e-98
>ref|XP_534795.2| PREDICTED: similar to Keratin, type II cytoskeletal 7 (Cytokeratin
7) (K7) (CK 7) (Sarcolectin) [Canis familiaris].
Length = 468
Score = 381 bits (979), Expect(2) = e-146
Identities = 206/291 (70%), Positives = 229/291 (78%), Gaps = 3/291 (1%)
Frame = +1
Query: 52 MSVHFSSQVFSSRSAAFPGRGTQGRLSSARLGGLXXXXXXXLYGLXXXXXXXXXXXXYGA 231
MS+H SQVFSSRSAAFPGRG Q RLSSAR GG L GL G
Sbjct: 1 MSIHLGSQVFSSRSAAFPGRGLQVRLSSARPGGFGSRS---LLGLGASRPRVAVRSASGG 57
Query: 232 PVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFID---KVRFLEQ 402
P GAGIR+VT+NQ+LL PL+VDIDP+I IKTLNN+FASF +VRFLEQ
Sbjct: 58 PGGAGIRQVTVNQSLLAPLRVDIDPAIQQVRREEREQIKTLNNRFASFSTGEPRVRFLEQ 117
Query: 403 QNKLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVE 582
QNKLLETKWALLQEQ+S +SS LP IFEA IAGLR+ LE LQ DGGRLE ELR+ QD++E
Sbjct: 118 QNKLLETKWALLQEQRSARSSCLPSIFEAHIAGLRRHLEGLQTDGGRLEVELRNMQDVLE 177
Query: 583 DFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELK 762
DFKNKYEDEIN RTAAENEFVVLKKDVD AYM+KVELEAKV+ALNDEI+F +TLYE EL
Sbjct: 178 DFKNKYEDEINRRTAAENEFVVLKKDVDAAYMSKVELEAKVEALNDEINFFKTLYETELA 237
Query: 763 ELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
ELQS++SDTSVVLSMDNSRSLDLDGIIAEVKAQYEE+ANRSRAE E Y++
Sbjct: 238 ELQSQISDTSVVLSMDNSRSLDLDGIIAEVKAQYEEMANRSRAETETMYQS 288
Score = 157 bits (397), Expect(2) = e-146
Identities = 82/107 (76%), Positives = 88/107 (82%)
Frame = +3
Query: 912 NKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGE 1091
+KFETLQAQAGKHGDDLRNTRNEIAEMNRA+QRLQAEIDNIKNQR KLEAAIAE E+RGE
Sbjct: 288 SKFETLQAQAGKHGDDLRNTRNEIAEMNRAIQRLQAEIDNIKNQRTKLEAAIAEAEERGE 347
Query: 1092 LAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
LA +D QDMARQLREYQ+LMN+KLALDIEIAT
Sbjct: 348 LALKDAHAKQEELEAALQRAKQDMARQLREYQELMNVKLALDIEIAT 394
>ref|XP_543650.2| PREDICTED: similar to cytokeratin type II [Canis familiaris].
Length = 975
Score = 311 bits (797), Expect(2) = e-115
Identities = 159/225 (70%), Positives = 192/225 (85%)
Frame = +1
Query: 241 AGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLE 420
AGI+EVT+NQ+LLTPL ++IDPS+ IKTLNNKFASFIDKVRFLEQQNK+LE
Sbjct: 557 AGIQEVTVNQSLLTPLHLEIDPSLQRVRKEEKEQIKTLNNKFASFIDKVRFLEQQNKVLE 616
Query: 421 TKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
TKW+LLQE K+T+++ P +FEA I+ LR+QLE L + RLE+EL++ QD+VEDFKNKY
Sbjct: 617 TKWSLLQEHKTTRANIEP-MFEAYISNLRRQLECLGGERTRLESELKNMQDVVEDFKNKY 675
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RT AENEFVVLKKDVD AYMNKVELEAKVDAL DEI+FLR Y+ EL +LQ+++
Sbjct: 676 EEEINRRTVAENEFVVLKKDVDAAYMNKVELEAKVDALMDEINFLRAFYDAELAQLQAQI 735
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
S+TSVVLSMDN+R LDLD II+EVKAQYE+IANRSRAEAE+WY+T
Sbjct: 736 SETSVVLSMDNNRKLDLDSIISEVKAQYEDIANRSRAEAESWYQT 780
Score = 122 bits (307), Expect(2) = e-115
Identities = 62/106 (58%), Positives = 78/106 (73%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E LQ AG+HGDDLR T+ EI+E+NR +QRL++EIDN+K Q A +++AIA+ E RGEL
Sbjct: 781 KYEELQRSAGRHGDDLRTTKMEISELNRVMQRLRSEIDNLKKQCATMQSAIADAEQRGEL 840
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D QDMARQLREYQ+LMN+KLALDIEIAT
Sbjct: 841 ALKDAKHKLAELEDALQKAKQDMARQLREYQELMNVKLALDIEIAT 886
Score = 305 bits (781), Expect = 6e-83
Identities = 167/258 (64%), Positives = 198/258 (76%), Gaps = 3/258 (1%)
Frame = +1
Query: 223 YGAPV--GAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFL 396
+G PV GI+EVT+NQ+LLTPL + IDP+I IKTLNNKFASFIDKVRFL
Sbjct: 111 WGFPVCPPGGIQEVTVNQSLLTPLNLQIDPAIQRVRKEEREQIKTLNNKFASFIDKVRFL 170
Query: 397 EQQNKLLETKWALLQEQKS-TKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQD 573
EQQNK+LETKW LLQEQ S T L F+ I LR+QL+++ + GRL+AELR+ QD
Sbjct: 171 EQQNKVLETKWELLQEQGSKTVRQNLEPFFDTYINDLRRQLDSVTTERGRLDAELRNMQD 230
Query: 574 IVEDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEE 753
+VEDFK +YEDEIN RTAAENEFV LKKDVD AYMNKVELEAKV++L DEI+FLR L+E
Sbjct: 231 VVEDFKVRYEDEINKRTAAENEFVALKKDVDSAYMNKVELEAKVNSLTDEINFLRMLFEA 290
Query: 754 ELKELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLRPSR 933
EL ++Q++VSDTSVVLSMDN+RSLDLD IIAEVKAQYE+IANRSRAEAE+WY+T
Sbjct: 291 ELSQMQTQVSDTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRAEAESWYQT------ 344
Query: 934 PRLESTGTTSGIPGMRLR 987
+ E T+G G LR
Sbjct: 345 -KYEELQVTAGRHGDDLR 361
Score = 124 bits (311), Expect = 2e-28
Identities = 63/106 (59%), Positives = 77/106 (72%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E LQ AG+HGDDLRNT+ EI+EMNR +QRL+AEID+IK Q + L+ AIA+ E RGEL
Sbjct: 345 KYEELQVTAGRHGDDLRNTKQEISEMNRVIQRLRAEIDSIKKQCSSLQTAIADAEQRGEL 404
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D QDMAR LREYQ+LMN+KLALD+EIAT
Sbjct: 405 ALKDARAKLVDLEEALQKAKQDMARLLREYQELMNVKLALDVEIAT 450
>ref|XP_850008.1| PREDICTED: similar to Keratin, type II cytoskeletal 6A (Cytokeratin
6A) (CK 6A) (K6a keratin) isoform 2 [Canis familiaris].
Length = 570
Score = 302 bits (773), Expect(2) = e-111
Identities = 156/225 (69%), Positives = 184/225 (81%), Gaps = 1/225 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI+EVT+NQNLLTPL + IDP+I IKTLNNKFASFIDKVRFLEQQNK+L+T
Sbjct: 134 GIQEVTVNQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDT 193
Query: 424 KWALLQEQKS-TKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQEQ + T L +FE I LR+QL+++ + GRL++ELRS QD VEDFKNKY
Sbjct: 194 KWTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSILGERGRLDSELRSMQDTVEDFKNKY 253
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RTAAENEFV LKKDVD AYMNKVEL+AKVDAL DEI+F R LY+ EL ++Q+ +
Sbjct: 254 EEEINKRTAAENEFVTLKKDVDAAYMNKVELQAKVDALTDEINFTRALYDAELSQMQTHI 313
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
SDTSVVLSMDN+R+LDLD IIAEVKAQYEEIA RSRAEAE+WY++
Sbjct: 314 SDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQS 358
Score = 119 bits (298), Expect(2) = e-111
Identities = 59/107 (55%), Positives = 77/107 (71%)
Frame = +3
Query: 912 NKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGE 1091
+K+E LQ AG+HGDDLRNT+ EIAE+NR +QRL++EID++K Q L++AIA+ E RGE
Sbjct: 358 SKYEELQVSAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCTNLQSAIADAEQRGE 417
Query: 1092 LAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
+A +D QDMAR L+EYQ+LMN KLALD+EIAT
Sbjct: 418 MALKDAKNKLAGLEDALQKAKQDMARLLKEYQELMNTKLALDVEIAT 464
>ref|XP_860457.1| PREDICTED: similar to Keratin, type II cytoskeletal 6A (Cytokeratin
6A) (CK 6A) (K6a keratin) isoform 3 [Canis familiaris].
Length = 559
Score = 302 bits (773), Expect(2) = e-111
Identities = 156/225 (69%), Positives = 184/225 (81%), Gaps = 1/225 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI+EVT+NQNLLTPL + IDP+I IKTLNNKFASFIDKVRFLEQQNK+L+T
Sbjct: 123 GIQEVTVNQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDT 182
Query: 424 KWALLQEQKS-TKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQEQ + T L +FE I LR+QL+++ + GRL++ELRS QD VEDFKNKY
Sbjct: 183 KWTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSILGERGRLDSELRSMQDTVEDFKNKY 242
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RTAAENEFV LKKDVD AYMNKVEL+AKVDAL DEI+F R LY+ EL ++Q+ +
Sbjct: 243 EEEINKRTAAENEFVTLKKDVDAAYMNKVELQAKVDALTDEINFTRALYDAELSQMQTHI 302
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
SDTSVVLSMDN+R+LDLD IIAEVKAQYEEIA RSRAEAE+WY++
Sbjct: 303 SDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRAEAESWYQS 347
Score = 119 bits (298), Expect(2) = e-111
Identities = 59/107 (55%), Positives = 77/107 (71%)
Frame = +3
Query: 912 NKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGE 1091
+K+E LQ AG+HGDDLRNT+ EIAE+NR +QRL++EID++K Q L++AIA+ E RGE
Sbjct: 347 SKYEELQVSAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCTNLQSAIADAEQRGE 406
Query: 1092 LAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
+A +D QDMAR L+EYQ+LMN KLALD+EIAT
Sbjct: 407 MALKDAKNKLAGLEDALQKAKQDMARLLKEYQELMNTKLALDVEIAT 453
>ref|NP_001014299.1| keratin, type II cytoskeletal 2 oral [Canis lupus familiaris].
Length = 653
Score = 279 bits (713), Expect(2) = e-104
Identities = 154/238 (64%), Positives = 178/238 (74%), Gaps = 5/238 (2%)
Frame = +1
Query: 223 YGAPVG--AGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFL 396
+G P G GI+EVT+NQ+LL PL V+IDP I IKTLNNKFASFIDKVRFL
Sbjct: 162 FGGPGGFPGGIQEVTVNQSLLQPLNVEIDPQIGQVKTQEREQIKTLNNKFASFIDKVRFL 221
Query: 397 EQQNKLLETKWALLQEQKSTKSS---RLPGIFEAQIAGLRKQLEALQLDGGRLEAELRST 567
EQQNK+LETKW LLQ+Q + S L FE+ I+ LR+QL+ + G LE EL++
Sbjct: 222 EQQNKVLETKWELLQQQTTGAGSGPNNLEPFFESYISFLRRQLDLALGERGNLEGELKNM 281
Query: 568 QDIVEDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLY 747
QD+VEDFK KYEDEIN R AAENEFV LKKDVD+AYM K EL+AKVD+L DE++FLRTLY
Sbjct: 282 QDLVEDFKKKYEDEINKRNAAENEFVGLKKDVDVAYMTKTELQAKVDSLTDELNFLRTLY 341
Query: 748 EEELKELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSL 921
E S VSDTSVVLSMDN+R LDLD IIAEVKAQYEEIA RS+AEAEA Y+T L
Sbjct: 342 E------MSHVSDTSVVLSMDNNRCLDLDSIIAEVKAQYEEIAQRSKAEAEALYQTKL 393
Score = 118 bits (295), Expect(2) = e-104
Identities = 59/110 (53%), Positives = 76/110 (69%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K LQ AG+HGDDL+NT++EI E+NR +QRL+AEI+N+K Q A L+AAIAE E
Sbjct: 388 LYQTKLGELQTTAGRHGDDLKNTKSEIMELNRMIQRLRAEIENVKKQNANLQAAIAEAEQ 447
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE+A +D D+AR L+EYQ+LMN+KLALD+EIAT
Sbjct: 448 RGEMALKDANAKLQGLQTALQKAKDDLARLLKEYQELMNVKLALDVEIAT 497
>ref|XP_543652.1| PREDICTED: similar to Keratin, type II cuticular Hb4 (Hair keratin,
type II Hb4) isoform 1 [Canis familiaris].
Length = 586
Score = 269 bits (688), Expect(2) = e-100
Identities = 139/236 (58%), Positives = 168/236 (71%)
Frame = +1
Query: 226 GAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQ 405
G P I VT+NQ+LLTPL ++IDP+ IKTLNNKFASFIDKVRFLEQQ
Sbjct: 117 GIPAAPSITAVTVNQSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDKVRFLEQQ 176
Query: 406 NKLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVED 585
NKLLETKW LQEQK +S+ P +FE I LR+QL+ D R EAE QD++E
Sbjct: 177 NKLLETKWNFLQEQKCARSNLEP-LFENYITNLRRQLDVANSDRARFEAERNHMQDVLEG 235
Query: 586 FKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKE 765
FK KYE+E+ R AENEFV LKKDVD A++NK +LEA VD L EI FL+TLY E++
Sbjct: 236 FKKKYEEEVGFRANAENEFVALKKDVDTAFLNKSDLEANVDTLTQEIDFLKTLYMAEIQL 295
Query: 766 LQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLRPSR 933
LQS +S+TSV++ MDNSR L++DGII EVKAQYEE+A RSRA+AEAWY+T R
Sbjct: 296 LQSHISETSVIVKMDNSRDLNVDGIIDEVKAQYEEVARRSRADAEAWYQTKYEEMR 351
Score = 115 bits (289), Expect(2) = e-100
Identities = 60/106 (56%), Positives = 76/106 (71%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E ++ A +H D+LRNTR+EI E+ R +QRL+AEI++ K+QRAKLEAA+AE E +GE
Sbjct: 346 KYEEMRVTASQHCDNLRNTRDEINELTRLIQRLKAEIEHAKSQRAKLEAAVAEAEQQGEA 405
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A D QDMARQLREYQ+LMN+KLALDIEIAT
Sbjct: 406 ALTDAKCKLAELEGALQQAKQDMARQLREYQELMNVKLALDIEIAT 451
>ref|XP_860523.1| PREDICTED: similar to Keratin, type II cuticular Hb4 (Hair keratin,
type II Hb4) isoform 2 [Canis familiaris].
Length = 554
Score = 269 bits (688), Expect(2) = e-100
Identities = 139/236 (58%), Positives = 168/236 (71%)
Frame = +1
Query: 226 GAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQ 405
G P I VT+NQ+LLTPL ++IDP+ IKTLNNKFASFIDKVRFLEQQ
Sbjct: 85 GIPAAPSITAVTVNQSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDKVRFLEQQ 144
Query: 406 NKLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVED 585
NKLLETKW LQEQK +S+ P +FE I LR+QL+ D R EAE QD++E
Sbjct: 145 NKLLETKWNFLQEQKCARSNLEP-LFENYITNLRRQLDVANSDRARFEAERNHMQDVLEG 203
Query: 586 FKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKE 765
FK KYE+E+ R AENEFV LKKDVD A++NK +LEA VD L EI FL+TLY E++
Sbjct: 204 FKKKYEEEVGFRANAENEFVALKKDVDTAFLNKSDLEANVDTLTQEIDFLKTLYMAEIQL 263
Query: 766 LQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLRPSR 933
LQS +S+TSV++ MDNSR L++DGII EVKAQYEE+A RSRA+AEAWY+T R
Sbjct: 264 LQSHISETSVIVKMDNSRDLNVDGIIDEVKAQYEEVARRSRADAEAWYQTKYEEMR 319
Score = 115 bits (289), Expect(2) = e-100
Identities = 60/106 (56%), Positives = 76/106 (71%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E ++ A +H D+LRNTR+EI E+ R +QRL+AEI++ K+QRAKLEAA+AE E +GE
Sbjct: 314 KYEEMRVTASQHCDNLRNTRDEINELTRLIQRLKAEIEHAKSQRAKLEAAVAEAEQQGEA 373
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A D QDMARQLREYQ+LMN+KLALDIEIAT
Sbjct: 374 ALTDAKCKLAELEGALQQAKQDMARQLREYQELMNVKLALDIEIAT 419
>ref|XP_850012.1| PREDICTED: similar to keratin 6 irs3 [Canis familiaris].
Length = 599
Score = 273 bits (698), Expect(2) = 5e-99
Identities = 142/228 (62%), Positives = 176/228 (77%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N+NLL PL V++DP I IK LNNKFASFIDKVRFLEQQN++LET
Sbjct: 103 GIHQVTVNKNLLAPLNVELDPEIQKVRTQEREQIKALNNKFASFIDKVRFLEQQNQVLET 162
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + + L I E I+ LRKQLE L D RL++ELRS +D+VED+K +Y
Sbjct: 163 KWELLQQLDVNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRSMRDVVEDYKKRY 222
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RT AENEFVVLKKDVD AYM+KVEL+AKVDAL+ EI F + LYE E+ ++QS +
Sbjct: 223 EEEINKRTTAENEFVVLKKDVDAAYMSKVELQAKVDALDGEIKFFKCLYEGEIAQIQSHI 282
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SDTSV+LSMDN+R L+LD IIAEV+AQYEEIA +S+AEAEA Y+T +
Sbjct: 283 SDTSVILSMDNNRDLNLDSIIAEVRAQYEEIALKSKAEAEALYQTKFQ 330
Score = 107 bits (268), Expect(2) = 5e-99
Identities = 53/110 (48%), Positives = 76/110 (69%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L KF+ LQ AG+HGDDL++T+NEI+E+ R +QRL++EI+++K Q + LE AIA+ E
Sbjct: 324 LYQTKFQELQLAAGRHGDDLKHTKNEISELTRLIQRLRSEIESVKKQCSNLETAIADAEQ 383
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR LREYQ+LM+ KL+LDIEIAT
Sbjct: 384 RGDCALKDARAKLDELEAALHQAKEELARMLREYQELMSTKLSLDIEIAT 433
>ref|NP_001003392.1| keratin, type II cytoskeletal 1 [Canis lupus familiaris].
Length = 619
Score = 274 bits (700), Expect(2) = 1e-98
Identities = 138/225 (61%), Positives = 181/225 (80%), Gaps = 1/225 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI+EVTINQ+LL PL V+IDP I IK+LNN+FASFIDKVRFLEQQN++L+T
Sbjct: 152 GIQEVTINQSLLQPLNVEIDPEIQKVKTREREQIKSLNNQFASFIDKVRFLEQQNQVLQT 211
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ ST++ L FE I+ LR++++ L+ D R+++EL++ QD+VED++NKY
Sbjct: 212 KWELLQQVDTSTRTHSLEPYFENYISNLRRRVDQLKSDQSRMDSELKNMQDLVEDYRNKY 271
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
EDEIN RT AENEFV +KKDVD A+MNKV+L+AKVD L EI FL TLY+ EL ++Q+++
Sbjct: 272 EDEINKRTNAENEFVTIKKDVDAAFMNKVDLQAKVDNLQQEIDFLTTLYQAELSQMQTQI 331
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
S+T+V+LSMDN+RSLDLD II+EVKAQYEEIA +S+AEAEA Y+T
Sbjct: 332 SETNVILSMDNNRSLDLDSIISEVKAQYEEIAQKSKAEAEALYQT 376
Score = 105 bits (263), Expect(2) = 1e-98
Identities = 54/110 (49%), Positives = 75/110 (68%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K+E LQ AGKHGD+L++T+ EI+E+NR QRL++EID++K Q + L+ +I++ E
Sbjct: 373 LYQTKYEELQITAGKHGDNLKSTKMEISELNRVAQRLRSEIDSVKKQISALQQSISDAEQ 432
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE A +D +DMAR LR+YQ+LMN KLALD+EIAT
Sbjct: 433 RGENALKDAQSKLAELEDALQKAKEDMARLLRDYQELMNTKLALDMEIAT 482
>ref|NP_001183958.1| keratin 71 [Canis lupus familiaris].
Length = 525
Score = 268 bits (685), Expect(2) = 2e-98
Identities = 138/228 (60%), Positives = 174/228 (76%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N+NLL PL V++DP I IK LNNKFASFIDKVRFLEQQN++LET
Sbjct: 103 GIHQVTVNKNLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 162
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + + L I E I+ LRKQLE L D RL++ELRS +D+VED+K +Y
Sbjct: 163 KWELLQQLDLNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRSVRDVVEDYKKRY 222
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RTAAENEFV+LKKDVD AY NKVEL+AKVD+++ EI F + LYE E+ ++QS +
Sbjct: 223 EEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDSMDQEIKFFKCLYEAEIAQIQSHI 282
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SD SV+LSMDN+R L+LD II EV+AQYEEIA +S+AEAEA Y+T +
Sbjct: 283 SDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQ 330
Score = 110 bits (276), Expect(2) = 2e-98
Identities = 53/110 (48%), Positives = 77/110 (70%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L KF+ LQ AG+HGDDL+NT+NEI+E+ R +QR+++EI+N+K Q + LE AIA+ E
Sbjct: 324 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQ 383
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR LREYQ+L+++KLALD+EIAT
Sbjct: 384 RGDNALKDARAKLDELEAALHQAKEELARMLREYQELLSLKLALDMEIAT 433
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,802,271
Number of extensions: 741040
Number of successful extensions: 5182
Number of sequences better than 1.0e-05: 116
Number of HSP's gapped: 4894
Number of HSP's successfully gapped: 212
Length of query: 411
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 306
Effective length of database: 15,374,224
Effective search space: 4704512544
Effective search space used: 4704512544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013220
(1234 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355441.1| PREDICTED: keratin, type II cytoskeletal 75-... 305 e-114
Alignment gi|XP_001927280.1| PREDICTED: keratin, type II cytoskeletal 3-l... 284 e-104
Alignment gi|XP_001929315.3| PREDICTED: keratin, type II cytoskeletal 71-... 273 e-100
Alignment gi|XP_003126223.2| PREDICTED: keratin, type II cytoskeletal 73 ... 272 7e-96
Alignment gi|NP_001230743.1| keratin 74 [Sus scrofa]. 256 2e-94
Alignment gi|XP_003126206.1| PREDICTED: keratin, type II cuticular Hb2 [S... 252 1e-91
Alignment gi|XP_001929338.1| PREDICTED: keratin, type II cytoskeletal 1b ... 249 2e-88
Alignment gi|NP_001092053.1| keratin, type II cytoskeletal 2 epidermal [S... 246 4e-88
Alignment gi|XP_003126221.1| PREDICTED: keratin, type II cytoskeletal 5 [... 299 2e-81
Alignment gi|XP_001927240.2| PREDICTED: keratin, type II cytoskeletal 79 ... 298 3e-81
>ref|XP_003355441.1| PREDICTED: keratin, type II cytoskeletal 75-like [Sus scrofa].
Length = 526
Score = 305 bits (781), Expect(2) = e-114
Identities = 157/230 (68%), Positives = 193/230 (83%), Gaps = 1/230 (0%)
Frame = +1
Query: 226 GAPVGAG-IREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQ 402
G GAG I+EVT+NQ+LLTPL ++IDPS+ IKTLNNKFASFIDKVRFLEQ
Sbjct: 107 GMMTGAGGIQEVTVNQSLLTPLHLEIDPSLQRVRKEEREQIKTLNNKFASFIDKVRFLEQ 166
Query: 403 QNKLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVE 582
QNK+LETKW+LLQE K+T+++ P +FEA I+ LR+QL++L + RLE EL+S QD+VE
Sbjct: 167 QNKVLETKWSLLQEHKTTRANIEP-MFEAYISNLRRQLDSLGGERSRLEVELKSMQDVVE 225
Query: 583 DFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELK 762
DFKNKYE+EIN RT AENEFVVLKKDVD AYM+KVELEAKV+AL DEI+FLR Y+ EL
Sbjct: 226 DFKNKYEEEINRRTVAENEFVVLKKDVDAAYMSKVELEAKVEALMDEINFLRAFYDAELA 285
Query: 763 ELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYR 912
+LQ+++S+TSV+LSMDN+R LDLD II+EVKAQYE+IANRSRAEAE+WY+
Sbjct: 286 QLQAQISETSVILSMDNNRKLDLDSIISEVKAQYEDIANRSRAEAESWYQ 335
Score = 124 bits (312), Expect(2) = e-114
Identities = 63/106 (59%), Positives = 79/106 (74%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E LQ AG+HGDDLR+T+ EI+E+NR +QRL++EIDN+K Q A L++AIA+ E RGEL
Sbjct: 337 KYEELQRSAGRHGDDLRSTKMEISELNRVIQRLRSEIDNLKKQCATLQSAIADAEQRGEL 396
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D QDMARQLREYQ+LMN+KLALDIEIAT
Sbjct: 397 ALKDAKHKLAELEDALQKAKQDMARQLREYQELMNVKLALDIEIAT 442
>ref|XP_001927280.1| PREDICTED: keratin, type II cytoskeletal 3-like [Sus scrofa].
Length = 655
Score = 284 bits (727), Expect(2) = e-104
Identities = 151/241 (62%), Positives = 183/241 (75%), Gaps = 8/241 (3%)
Frame = +1
Query: 223 YGAPVG-----AGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKV 387
+G P G GI+EVT+NQ+LL PL V+IDP I IKTLN+KFASFIDKV
Sbjct: 157 FGGPSGPGGFPGGIQEVTVNQSLLQPLNVEIDPQIGQVKAQEREQIKTLNDKFASFIDKV 216
Query: 388 RFLEQQNKLLETKWALLQEQKS---TKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAEL 558
RFLEQQNK+LETKW+LLQEQ S T + L FE I+ L+ L+ L ++ +L+ EL
Sbjct: 217 RFLEQQNKVLETKWSLLQEQGSGSNTNNRNLESFFENYISSLKAFLDGLHIEKDKLQEEL 276
Query: 559 RSTQDIVEDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLR 738
RS +++VEDFK KYE+EIN RTAAEN+FVVLKKD+D AYM KVELEAKVD++ DEI+FL+
Sbjct: 277 RSMEEMVEDFKKKYEEEINKRTAAENDFVVLKKDIDAAYMTKVELEAKVDSVTDEINFLK 336
Query: 739 TLYEEELKELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTS 918
LY+ EL +LQS SDTSVVLSMDN+R LDLD IIAEV+AQYE IA RS+AEAEA Y+T
Sbjct: 337 ALYDAELSQLQSDTSDTSVVLSMDNNRDLDLDSIIAEVRAQYEAIAQRSKAEAEALYQTK 396
Query: 919 L 921
L
Sbjct: 397 L 397
Score = 112 bits (281), Expect(2) = e-104
Identities = 55/110 (50%), Positives = 76/110 (69%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K L+ AG+HGDDL++TR+EI+E+NR +QRLQAEI++IK Q L+ A+A+ E
Sbjct: 392 LYQTKLGELETTAGRHGDDLKSTRSEISELNRLIQRLQAEIESIKKQNTNLQTAVADAEQ 451
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE+A +D +D+AR L+EYQ+LMN+KLALD+EIAT
Sbjct: 452 RGEVALKDADTKLQELKVALQQAKEDLARLLKEYQELMNVKLALDVEIAT 501
>ref|XP_001929315.3| PREDICTED: keratin, type II cytoskeletal 71-like [Sus scrofa].
Length = 519
Score = 273 bits (699), Expect(2) = e-100
Identities = 143/237 (60%), Positives = 179/237 (75%), Gaps = 3/237 (1%)
Frame = +1
Query: 223 YGAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQ 402
+G GI+EVT+NQ+LL PL V+IDP I IKTLNNKFASFIDKVRFLEQ
Sbjct: 88 FGGGFPGGIQEVTVNQSLLQPLNVEIDPQIGQVKAQEREQIKTLNNKFASFIDKVRFLEQ 147
Query: 403 QNKLLETKWALLQEQKS---TKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQD 573
QNK+LETKW LLQ+Q + T ++ L +FE I R L+++ + GRL++ELR+ QD
Sbjct: 148 QNKVLETKWNLLQQQGTNSITGTNNLEPLFENYINSQRSYLDSILGEKGRLDSELRNMQD 207
Query: 574 IVEDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEE 753
+VEDFK KYEDEIN RTAAENEFV LKKDVD AY NKVEL+AKVD+++ EI F + LYE
Sbjct: 208 LVEDFKKKYEDEINKRTAAENEFVTLKKDVDAAYANKVELQAKVDSMDQEIKFFKCLYEA 267
Query: 754 ELKELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
E+ ++QS +SD SV+LSMDN+R L+LD II EV+AQYEEIA +S+AEAEA Y+T +
Sbjct: 268 EIAQIQSHISDMSVILSMDNNRDLNLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQ 324
Score = 112 bits (279), Expect(2) = e-100
Identities = 54/110 (49%), Positives = 77/110 (70%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L KF+ LQ AG+HGDDL+NT+NEI+E+ R +QR+++EI+N+K Q + LE AIA+ E
Sbjct: 318 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQ 377
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR LREYQ+LM++KLALD+EIAT
Sbjct: 378 RGDNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIAT 427
>ref|XP_003126223.2| PREDICTED: keratin, type II cytoskeletal 73 [Sus scrofa].
Length = 518
Score = 272 bits (695), Expect(2) = 7e-96
Identities = 141/228 (61%), Positives = 177/228 (77%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++LET
Sbjct: 103 GIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 162
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + + L I E I+ LRKQLEAL D RL++ELRS +D+VED+K +Y
Sbjct: 163 KWELLQQLDLNNCKNNLEPILEGYISTLRKQLEALSGDRVRLDSELRSVRDVVEDYKKRY 222
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E EIN RTAAENEFV LKKDVD AYMNKVEL+AKVD+L DEI F + LYE E+ ++QS +
Sbjct: 223 EVEINRRTAAENEFVELKKDVDTAYMNKVELQAKVDSLTDEIKFFKYLYEGEIAQIQSHI 282
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SDTSV+LSMDN+R LDLD IIAEV+AQYE+I+ +S+AEAEA Y++ ++
Sbjct: 283 SDTSVILSMDNNRDLDLDSIIAEVRAQYEDISLKSKAEAEALYQSKIQ 330
Score = 97.8 bits (242), Expect(2) = 7e-96
Identities = 49/110 (44%), Positives = 71/110 (64%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L +K + LQ AG+HGDDL+ T+ EI+++NR +QR+ AEI ++K Q + LE AI + E
Sbjct: 324 LYQSKIQELQVTAGQHGDDLKLTKAEISDLNRLIQRICAEIGSVKKQCSNLETAITDAEQ 383
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ +D +++AR LREYQ+LM+ KLALD+EIAT
Sbjct: 384 RGDCTLKDAQAKLDELEGALYQAKEELARMLREYQELMSTKLALDVEIAT 433
>ref|NP_001230743.1| keratin 74 [Sus scrofa].
Length = 531
Score = 256 bits (654), Expect(2) = 2e-94
Identities = 134/228 (58%), Positives = 173/228 (75%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++LET
Sbjct: 111 GIHQVTVNKSLLAPLNVELDPEIQKVRTQEREQIKALNNKFASFIDKVRFLEQQNQVLET 170
Query: 424 KWALLQEQKSTKSSR-LPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + L I E I+ L+KQLEAL D RL++EL+ QD+VED+K +Y
Sbjct: 171 KWQLLQQLDLDNCKKNLEPILEGYISTLQKQLEALSGDRMRLDSELKIMQDLVEDYKKRY 230
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E EIN RTAAENEFVVLKKD D AY KVEL+AKVD+L+ +I FL+ LY+ E+ ++Q+
Sbjct: 231 EVEINRRTAAENEFVVLKKDADAAYTVKVELQAKVDSLDKDIKFLKCLYDAEIAQVQTHA 290
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
S+TSV+LSMDN+R LDLD IIAEV+AQYE+IA +S+AEAEA Y++ ++
Sbjct: 291 SETSVILSMDNNRDLDLDSIIAEVRAQYEDIALKSKAEAEALYQSKIQ 338
Score = 108 bits (270), Expect(2) = 2e-94
Identities = 54/110 (49%), Positives = 76/110 (69%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L +K + LQ AG+HGDDL++TRN+I+E+NR +QR++ EI N+K Q + LE AIA+ E
Sbjct: 332 LYQSKIQELQLAAGQHGDDLKHTRNDISELNRLIQRIRCEIANVKKQCSNLETAIADAEQ 391
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE A +D +++AR LREYQ+LM++KLALD+EIAT
Sbjct: 392 RGENALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIAT 441
>ref|XP_003126206.1| PREDICTED: keratin, type II cuticular Hb2 [Sus scrofa].
Length = 514
Score = 252 bits (644), Expect(2) = 1e-91
Identities = 128/224 (57%), Positives = 172/224 (76%)
Frame = +1
Query: 241 AGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLE 420
A I VTIN++LL PL+++IDPS+ IK LNN+FASFI+KVRFLEQ+NKLLE
Sbjct: 88 ACITPVTINESLLVPLELEIDPSVQRVKRDEKEQIKCLNNRFASFINKVRFLEQKNKLLE 147
Query: 421 TKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
TKW +Q+Q+ +++ P IFEA I LR+QL+ + D RLE+EL S Q+ +E +K KY
Sbjct: 148 TKWNFMQQQRCCQNNIEP-IFEAYICALRRQLDCVAGDRARLESELCSVQETLEAYKKKY 206
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+E++ R AENEFV LKKDVD A++ K +LE +AL E+ FLR+LY+EE+ LQS++
Sbjct: 207 EEELSLRPCAENEFVALKKDVDTAFLKKADLETNTEALIQELDFLRSLYDEEICLLQSQI 266
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYR 912
S+TSV++ MDNSR LD+DGIIAE+KAQY+EIA+RS+AEAEAWY+
Sbjct: 267 SETSVIVKMDNSRELDVDGIIAEIKAQYDEIASRSKAEAEAWYQ 310
Score = 103 bits (257), Expect(2) = 1e-91
Identities = 54/106 (50%), Positives = 68/106 (64%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
++E L+ AG H D+LRN +NEI EMN+ +QRLQ +I+N+K QR KLE IAE E +GE
Sbjct: 312 RYEELRLTAGNHCDNLRNRKNEILEMNKLIQRLQQDIENVKAQRCKLEGTIAEAEQQGEA 371
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A D QDMA L+EYQ++MN KL LDIEIAT
Sbjct: 372 ALNDAKCKLAGLEEALQKAKQDMACLLKEYQEVMNSKLGLDIEIAT 417
>ref|XP_001929338.1| PREDICTED: keratin, type II cytoskeletal 1b [Sus scrofa].
Length = 595
Score = 249 bits (635), Expect(2) = 2e-88
Identities = 127/232 (54%), Positives = 175/232 (75%), Gaps = 1/232 (0%)
Frame = +1
Query: 223 YGAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQ 402
+ P G GI+EVTINQ+LL PL +++DP I I LNNKFASFIDKVRFLEQ
Sbjct: 131 FSCPPG-GIQEVTINQSLLEPLCLEVDPEIQRIKTQEREQIMVLNNKFASFIDKVRFLEQ 189
Query: 403 QNKLLETKWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIV 579
QN++L+TKW LLQ+ ST ++ L I E+ I+ L+KQ++ L + R +E+RS QD+V
Sbjct: 190 QNQVLQTKWELLQQINTSTWTNNLEPILESYISKLQKQVDFLNAEQMRQSSEIRSMQDVV 249
Query: 580 EDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEEL 759
ED+KNKYE+EIN RT+ EN+FV+LKKDVD +YM+KV+L++K D L +E+ FL+ L++ EL
Sbjct: 250 EDYKNKYEEEINRRTSCENDFVILKKDVDASYMSKVDLQSKADILFEEVEFLKCLFQLEL 309
Query: 760 KELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
++Q+ ++DT+V+LSMDN+RSLDLD II V+ QYE IA +S+ EAEA Y+T
Sbjct: 310 SQMQTNITDTNVILSMDNNRSLDLDSIIDAVRTQYELIAQKSKEEAEALYQT 361
Score = 96.3 bits (238), Expect(2) = 2e-88
Identities = 47/110 (42%), Positives = 72/110 (65%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K++ LQ AG+HGD+L+ ++ EI+E+N +QRLQAEI N++ Q ++ AI++ E+
Sbjct: 358 LYQTKYQELQITAGRHGDELKTSKMEISELNITIQRLQAEISNVRKQIDQMYTAISDAEE 417
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +DMAR LR+YQ+L+ KL+LD+EIAT
Sbjct: 418 RGDRALKDAQQKLQDMEDALQQAKEDMARLLRDYQELLGTKLSLDVEIAT 467
>ref|NP_001092053.1| keratin, type II cytoskeletal 2 epidermal [Sus scrofa].
Length = 642
Score = 246 bits (628), Expect(2) = 4e-88
Identities = 127/231 (54%), Positives = 171/231 (74%), Gaps = 1/231 (0%)
Frame = +1
Query: 226 GAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQ 405
G G GI EV++NQ+LL PL + IDP I IKTLNNKFA FIDKVRFLEQQ
Sbjct: 154 GGYPGGGIHEVSVNQSLLQPLNLKIDPEIQNVKSQEREQIKTLNNKFACFIDKVRFLEQQ 213
Query: 406 NKLLETKWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVE 582
N++L+TKW LLQ+ T + L +F+ I+ L+ Q+ L + + EL + QD+VE
Sbjct: 214 NQVLKTKWELLQQIDVRTCTINLEPLFQEYISRLQNQVNMLCAEKTSQDTELNNQQDLVE 273
Query: 583 DFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELK 762
+F+ KYEDEIN RTAAEN+FV LKKDVD AY+NK +L+AKVD L+ E++FL+ L++ EL
Sbjct: 274 EFRKKYEDEINKRTAAENDFVTLKKDVDNAYINKADLQAKVDVLSQELAFLKILFDAELS 333
Query: 763 ELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
++Q V++T+V+LSMDNSR+LDL+ II+EV++QYEEIA+RS+AEAEA Y +
Sbjct: 334 QMQQNVTETNVILSMDNSRNLDLNDIISEVQSQYEEIAHRSKAEAEALYHS 384
Score = 97.8 bits (242), Expect(2) = 4e-88
Identities = 50/110 (45%), Positives = 70/110 (63%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L +K+E LQ AGKHGD L+ + EI E+NR +QRLQAEI ++ Q ++ +IA+ E
Sbjct: 381 LYHSKYEELQITAGKHGDSLKEVKMEICELNRMIQRLQAEISQVRKQCKNVQDSIADAEQ 440
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE A +D +++A LR+YQ+LMN+KLALD+EIAT
Sbjct: 441 RGENALKDAQNKLKELEEALQKAKENLACLLRDYQELMNVKLALDVEIAT 490
>ref|XP_003126221.1| PREDICTED: keratin, type II cytoskeletal 5 [Sus scrofa].
Length = 602
Score = 299 bits (766), Expect = 2e-81
Identities = 160/249 (64%), Positives = 192/249 (77%), Gaps = 1/249 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI+EVT+NQ+LLTPL + IDP+I IKTLNNKFASFIDKVRFLEQQNK+L+T
Sbjct: 144 GIQEVTVNQSLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDT 203
Query: 424 KWALLQEQKS-TKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQEQ + T L +FE I LR+QL+++ + GRL++ELR+ QD+VEDFKNKY
Sbjct: 204 KWTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSILGERGRLDSELRNMQDLVEDFKNKY 263
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
EDEIN RT AENEFV+LKKDVD AYMNKVELEAKVDAL DEI+F + +E EL ++Q+ V
Sbjct: 264 EDEINKRTTAENEFVMLKKDVDAAYMNKVELEAKVDALMDEINFTKMFFEAELSQMQTHV 323
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLRPSRPRLESTGTT 960
SDTSVVLSMDN+R+LDLD IIAEVKAQYE+IANRSR EAE+WY+T + E T
Sbjct: 324 SDTSVVLSMDNNRNLDLDSIIAEVKAQYEDIANRSRTEAESWYQT-------KYEELQQT 376
Query: 961 SGIPGMRLR 987
+G G LR
Sbjct: 377 AGRHGDDLR 385
Score = 124 bits (311), Expect = 1e-28
Identities = 64/106 (60%), Positives = 77/106 (72%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E LQ AG+HGDDLRNT++EI+EMNR +QRL+AEIDN+K Q A L+ AIA+ E RGEL
Sbjct: 369 KYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 428
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D QDMAR LREYQ+LMN KLALD+EIAT
Sbjct: 429 ALKDARNKLAELEDALQKAKQDMARLLREYQELMNTKLALDVEIAT 474
>ref|XP_001927240.2| PREDICTED: keratin, type II cytoskeletal 79 [Sus scrofa].
Length = 535
Score = 298 bits (764), Expect = 3e-81
Identities = 178/337 (52%), Positives = 212/337 (62%), Gaps = 18/337 (5%)
Frame = +1
Query: 31 SPARTASMSVHFSSQVFSSRSAAF-PGRGTQGRLSSARLGGLXXXXXXXLYGLXXXXXXX 207
S A T+ SV S SS A P G G S LGG G
Sbjct: 27 SRAHTSFSSVTVSQSSGSSGGAPCGPSAGGLGSRSLYNLGGSKSISVSVAGGASSGRNLG 86
Query: 208 XXXXXYGAPVG--------------AGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXI 345
GA VG GI++VT+NQ+LLTPL V+IDP I I
Sbjct: 87 GFGLGRGAYVGLGAGRQMFGLACPPGGIQQVTVNQSLLTPLNVEIDPEIRQVRTQEREQI 146
Query: 346 KTLNNKFASFIDKVRFLEQQNKLLETKWALLQEQ---KSTKSSRLPGIFEAQIAGLRKQL 516
KTLN+KFASFIDKVRFLEQQNK+LETKW LLQEQ L +FE I+ LR QL
Sbjct: 147 KTLNDKFASFIDKVRFLEQQNKVLETKWVLLQEQGQKSGVTRKNLEPLFENYISNLRMQL 206
Query: 517 EALQLDGGRLEAELRSTQDIVEDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELE 696
++LQ + GRL++ELR+ QD+VEDFKNKYEDEIN R AAENEFVVLKKDVD A+M +++L
Sbjct: 207 DSLQSERGRLDSELRNMQDLVEDFKNKYEDEINKRNAAENEFVVLKKDVDAAFMGRMDLH 266
Query: 697 AKVDALNDEISFLRTLYEEELKELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIA 876
KVD L DEI+FLR LYEEEL ++Q+ VSDT+V+LSMDN+R+LDLD IIAEVKAQYE+IA
Sbjct: 267 GKVDGLTDEINFLRHLYEEELSQMQTHVSDTNVILSMDNNRNLDLDSIIAEVKAQYEQIA 326
Query: 877 NRSRAEAEAWYRTSLRPSRPRLESTGTTSGIPGMRLR 987
RSRAEAEAWY++ + E T+G G LR
Sbjct: 327 QRSRAEAEAWYQS-------KYEELQVTAGKHGDNLR 356
Score = 110 bits (274), Expect = 2e-24
Identities = 56/107 (52%), Positives = 73/107 (68%)
Frame = +3
Query: 912 NKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGE 1091
+K+E LQ AGKHGD+LR+T+NEI+E+ R VQRLQ E+D K Q L++AI E E RG+
Sbjct: 339 SKYEELQVTAGKHGDNLRDTKNEISELTRTVQRLQGEVDAAKKQCQHLQSAIEEAEQRGD 398
Query: 1092 LAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
LA +D +D+AR LR+YQ LMN+KLALD+EIAT
Sbjct: 399 LALKDAQKKLGDLDMALHQAKEDLARLLRDYQALMNVKLALDVEIAT 445
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,409,418
Number of extensions: 490453
Number of successful extensions: 2782
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 2638
Number of HSP's successfully gapped: 100
Length of query: 411
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,829,335
Effective search space: 2737093850
Effective search space used: 2737093850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013220
(1234 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149064.1| keratin, type II cytoskeletal 7 [Mus musculus]. 392 e-146
Alignment gi|NP_808385.2| hypothetical protein LOC239673 [Mus musculus]. 312 e-115
Alignment gi|NP_032501.2| keratin, type II cytoskeletal 4 [Mus musculus]. 295 e-106
Alignment gi|NP_032500.2| keratin, type II cuticular Hb4 [Mus musculus]. 270 6e-99
Alignment gi|NP_997650.1| keratin, type II cytoskeletal 73 [Mus musculus]. 267 2e-97
Alignment gi|NP_064340.1| keratin, type II cytoskeletal 71 [Mus musculus]. 264 2e-97
Alignment gi|NP_998893.1| keratin, type II cytoskeletal 72 [Mus musculus]. 263 2e-95
Alignment gi|NP_032499.2| keratin, type II cytoskeletal 1 [Mus musculus]. 261 2e-93
Alignment gi|NP_444479.2| keratin, type II cuticular Hb2 [Mus musculus]. 254 2e-91
Alignment gi|NP_001003667.1| keratin, type II cytoskeletal 1b [Mus muscul... 257 5e-91
>ref|NP_149064.1| keratin, type II cytoskeletal 7 [Mus musculus].
Length = 457
Score = 392 bits (1008), Expect(2) = e-146
Identities = 209/288 (72%), Positives = 230/288 (79%)
Frame = +1
Query: 52 MSVHFSSQVFSSRSAAFPGRGTQGRLSSARLGGLXXXXXXXLYGLXXXXXXXXXXXXYGA 231
MS+HFSS RS A+PGRG Q RLSS R LYGL YG
Sbjct: 1 MSIHFSS-----RSTAYPGRGAQVRLSSGRAS----FGSRSLYGLGSSRPRVAVRSAYGG 51
Query: 232 PVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNK 411
PVGAGIRE+TINQ+LL PL VDIDP+I IKTLNNKFASFIDKVRFLEQQNK
Sbjct: 52 PVGAGIREITINQSLLAPLSVDIDPTIQQVRQEEREQIKTLNNKFASFIDKVRFLEQQNK 111
Query: 412 LLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFK 591
+LETKWALLQEQKS KSS+LP IFEAQIAGLR+QLE LQLDGGRLE ELR+ QD+VEDFK
Sbjct: 112 MLETKWALLQEQKSAKSSQLPRIFEAQIAGLRQQLETLQLDGGRLEVELRNMQDVVEDFK 171
Query: 592 NKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQ 771
NKYE+EIN RTAAENEFV+LKKDVD AY NKVELEAK D+L DEI+FL+TL+E EL ELQ
Sbjct: 172 NKYEEEINRRTAAENEFVLLKKDVDAAYTNKVELEAKADSLQDEINFLKTLHETELAELQ 231
Query: 772 SKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
S++SDTSVVLSMDNSRSLDLDGIIA+VKAQYEE+AN SRAEAEAWY+T
Sbjct: 232 SQISDTSVVLSMDNSRSLDLDGIIADVKAQYEEMANHSRAEAEAWYQT 279
Score = 146 bits (368), Expect(2) = e-146
Identities = 75/106 (70%), Positives = 86/106 (81%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
KFETLQAQAGKHGDDLRNTRNEIAEMNR++QRLQAEID +KNQRAKLE++IAE E++GEL
Sbjct: 280 KFETLQAQAGKHGDDLRNTRNEIAEMNRSIQRLQAEIDTLKNQRAKLESSIAEAEEQGEL 339
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D QD+ARQLREYQ+L+N KLALDIEIAT
Sbjct: 340 AIKDAHAKQGELEAALQKAKQDVARQLREYQELLNTKLALDIEIAT 385
>ref|NP_808385.2| hypothetical protein LOC239673 [Mus musculus].
Length = 538
Score = 312 bits (800), Expect(2) = e-115
Identities = 161/229 (70%), Positives = 192/229 (83%)
Frame = +1
Query: 229 APVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQN 408
AP GI EVT+NQ+LLTPL ++IDPS+ IKTLNNKFASFIDKVRFLEQQN
Sbjct: 109 APGAGGIHEVTVNQSLLTPLHLEIDPSLQRVRKEEKEQIKTLNNKFASFIDKVRFLEQQN 168
Query: 409 KLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDF 588
K+LETKW+LLQE K+T+++ P +FEA I LR+QLE L + RLE EL+S QD+VEDF
Sbjct: 169 KVLETKWSLLQEHKTTRTNLEP-MFEAYITNLRRQLECLGGERSRLETELKSMQDVVEDF 227
Query: 589 KNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKEL 768
KNKYE+EI+ RTAAENEFVVLKKDVD AYMNKVELEAKV+AL DEI+FLR +E EL +L
Sbjct: 228 KNKYEEEIHRRTAAENEFVVLKKDVDAAYMNKVELEAKVEALMDEINFLRAFFEAELAQL 287
Query: 769 QSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
Q+++S+TSVVLSMDN+RSL+LD IIAEVKAQYE+IANRSRAEAE+WY+T
Sbjct: 288 QAQISETSVVLSMDNNRSLNLDSIIAEVKAQYEDIANRSRAEAESWYQT 336
Score = 121 bits (304), Expect(2) = e-115
Identities = 63/106 (59%), Positives = 78/106 (73%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E LQ AG+ GDDLR T+ EI+E+NRA+QRL++EIDN+K Q A L+A+IA+ E RGEL
Sbjct: 337 KYEELQRSAGQRGDDLRTTKMEISELNRAMQRLRSEIDNLKKQCATLQASIADAEQRGEL 396
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D QDMARQLREYQ+LMN+KLALDIEIAT
Sbjct: 397 ALKDAKNKLAELEDALQKAKQDMARQLREYQELMNVKLALDIEIAT 442
>ref|NP_032501.2| keratin, type II cytoskeletal 4 [Mus musculus].
Length = 525
Score = 295 bits (754), Expect(2) = e-106
Identities = 156/236 (66%), Positives = 186/236 (78%), Gaps = 3/236 (1%)
Frame = +1
Query: 226 GAPV--GAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLE 399
G PV GI+EVTINQ+LLTPLQV+IDP I IKTLNNKFASFIDKVRFLE
Sbjct: 109 GFPVCPAGGIQEVTINQSLLTPLQVEIDPEIQKIRTAEREQIKTLNNKFASFIDKVRFLE 168
Query: 400 QQNKLLETKWALLQEQKSTKSSR-LPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDI 576
QQNK+LETKW LLQ+Q +T S + L FE I LRK L+ L D GRL++EL+ QD
Sbjct: 169 QQNKVLETKWNLLQQQTTTTSPKSLDPFFETYINALRKNLDTLSNDKGRLQSELKMMQDS 228
Query: 577 VEDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEE 756
VEDFK KYE+EIN RTAAEN+FVVLKKDVD AYM KVELEAK+++L DEI+F R LYE E
Sbjct: 229 VEDFKTKYEEEINKRTAAENDFVVLKKDVDAAYMIKVELEAKMESLKDEINFTRVLYEAE 288
Query: 757 LKELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
L ++Q+ VSDTSVVLSMDN+R+LDLDGIIAEV+AQYE+IA +S+AE E+WY+ ++
Sbjct: 289 LAQMQTHVSDTSVVLSMDNNRNLDLDGIIAEVRAQYEDIARKSKAEVESWYQIKVQ 344
Score = 108 bits (270), Expect(2) = e-106
Identities = 54/106 (50%), Positives = 73/106 (68%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K + LQ A +HGD L+ T+NEI+E+NR +QRL+AEI+NIK Q L+A++A+ E RGEL
Sbjct: 342 KVQQLQMSADQHGDSLKTTKNEISELNRMIQRLRAEIENIKKQSQTLQASVADAEQRGEL 401
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D +D+AR LR+YQ LMN+KLALD+EIAT
Sbjct: 402 ALKDAYSKRAELETALQKAKEDLARLLRDYQALMNVKLALDVEIAT 447
>ref|NP_032500.2| keratin, type II cuticular Hb4 [Mus musculus].
Length = 603
Score = 270 bits (689), Expect(2) = 6e-99
Identities = 139/236 (58%), Positives = 170/236 (72%)
Frame = +1
Query: 226 GAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQ 405
G P I VT+NQ+LLTPL ++IDP+ IKTLNNKFASFIDKVRFLEQQ
Sbjct: 138 GGPSAPAITAVTVNQSLLTPLNLEIDPNAQRVKRDEKEQIKTLNNKFASFIDKVRFLEQQ 197
Query: 406 NKLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVED 585
NKLLETKW+ LQEQK +S+ P +F+ I LR+QL+ L D RL+AE QDI+E
Sbjct: 198 NKLLETKWSFLQEQKCARSNLEP-LFDNYITNLRRQLDVLSSDQARLQAERNHLQDILEG 256
Query: 586 FKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKE 765
FK KYE+E+ R AENEFV LKKDVD A++NK +LEA VD L E FL+ LY EE++
Sbjct: 257 FKKKYEEEVVFRANAENEFVALKKDVDAAFLNKSDLEANVDTLIQETEFLKALYHEEIEM 316
Query: 766 LQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLRPSR 933
LQS +S+TSV++ MDNSR L+LDGIIAEVKAQYEE+A RSRA+ E+WY+T R
Sbjct: 317 LQSHISETSVIVKMDNSRDLNLDGIIAEVKAQYEEVARRSRADVESWYQTKYEEMR 372
Score = 110 bits (276), Expect(2) = 6e-99
Identities = 58/106 (54%), Positives = 74/106 (69%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E ++ AG+H D+LR+TR+EI E+ R +QRL+AEI++ K Q AKLEAA+AE E +GE
Sbjct: 367 KYEEMRVTAGQHCDNLRSTRDEINELTRLIQRLKAEIEHTKAQCAKLEAAVAEAEQQGEA 426
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A D QDMARQLREYQ+LMN+KLALDIEI T
Sbjct: 427 ALNDAKCKLADLEGALQQAKQDMARQLREYQELMNVKLALDIEIVT 472
>ref|NP_997650.1| keratin, type II cytoskeletal 73 [Mus musculus].
Length = 539
Score = 267 bits (682), Expect(2) = 2e-97
Identities = 139/228 (60%), Positives = 177/228 (77%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++L+T
Sbjct: 102 GIHQVTVNKSLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLQT 161
Query: 424 KWALLQEQKSTKSSR-LPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + R L ++EA I+ L+KQL++L D RL++ELR +D VED K +Y
Sbjct: 162 KWELLQQLDLSNCRRNLEPVYEAHISSLQKQLDSLSGDRVRLDSELRGMRDAVEDCKKRY 221
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RT AENEFVVLKKDVD AYM+KVEL+AKVDAL+ EI FL+ LYE E+ ++QS +
Sbjct: 222 EEEINKRTTAENEFVVLKKDVDAAYMSKVELQAKVDALDGEIKFLKCLYEGEITQMQSHI 281
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SDTSVVLSMDN+R+LDLD IIAEV+AQYE+IA +S+AEAE Y+T +
Sbjct: 282 SDTSVVLSMDNNRNLDLDSIIAEVRAQYEDIALKSKAEAEMVYQTKFQ 329
Score = 108 bits (269), Expect(2) = 2e-97
Identities = 53/106 (50%), Positives = 76/106 (71%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
KF+ LQ AG+HGDDL++TRNEI+E+ R +QRL++EI+++K Q + LE AIA+ E RG+
Sbjct: 327 KFQELQLAAGRHGDDLKHTRNEISELTRLIQRLRSEIESVKKQCSNLETAIADAEQRGDC 386
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D +++AR LRE+Q+LM++KLALDIEIAT
Sbjct: 387 ALKDARAKLDELERALHQAKEELARMLREHQELMSMKLALDIEIAT 432
>ref|NP_064340.1| keratin, type II cytoskeletal 71 [Mus musculus].
Length = 524
Score = 264 bits (675), Expect(2) = 2e-97
Identities = 134/228 (58%), Positives = 174/228 (76%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++L+T
Sbjct: 102 GIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLQT 161
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + + L I E I+ +RKQLE L D RL++ELR+ +D+VED+K KY
Sbjct: 162 KWELLQQLDLNNCKNNLEPILEGHISNMRKQLETLSGDRVRLDSELRNVRDVVEDYKKKY 221
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RTAAENEFV+LKKDVD AY NKVEL+AKVD ++ +I F + L+E E+ ++QS +
Sbjct: 222 EEEINRRTAAENEFVLLKKDVDAAYANKVELQAKVDTMDQDIKFFKCLFEAEMAQIQSHI 281
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SD SV+LSMDN+R+LDLD II EV+AQYEEIA +S+AEAEA Y+T +
Sbjct: 282 SDMSVILSMDNNRNLDLDSIIDEVRAQYEEIALKSKAEAEALYQTKFQ 329
Score = 110 bits (276), Expect(2) = 2e-97
Identities = 55/110 (50%), Positives = 75/110 (68%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L KF+ LQ AG+HGDDL+NT+NEI E+ R +QRL++EI+N K Q + LE AIA+ E
Sbjct: 323 LYQTKFQELQLAAGRHGDDLKNTKNEITELTRFIQRLRSEIENAKKQASNLETAIADAEQ 382
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR LREYQ+LM++KLALD+EIAT
Sbjct: 383 RGDSALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIAT 432
>ref|NP_998893.1| keratin, type II cytoskeletal 72 [Mus musculus].
Length = 520
Score = 263 bits (671), Expect(2) = 2e-95
Identities = 152/302 (50%), Positives = 192/302 (63%), Gaps = 9/302 (2%)
Frame = +1
Query: 46 ASMSVHFSSQVFSSRSAAFPGRGTQGRLSSARL--------GGLXXXXXXXLYGLXXXXX 201
AS+ F SRS G G + LSSA GG G
Sbjct: 32 ASVRAGVKGAAFGSRSLFCVGGGRRLALSSAGRSGGFTLGHGGASGGRPGGFVGTVFGSA 91
Query: 202 XXXXXXXYGAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFID 381
P G GI +V +N++LL PL V++DP I IK LNNKFASFID
Sbjct: 92 GLGPTCPSVCPPG-GIPQVVVNKSLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFID 150
Query: 382 KVRFLEQQNKLLETKWALLQEQKSTKSSR-LPGIFEAQIAGLRKQLEALQLDGGRLEAEL 558
KVRFLEQQN++LETKW LLQ+ S R L + E+ I+ L+KQLE L D RL++EL
Sbjct: 151 KVRFLEQQNQVLETKWELLQQLDLNNSKRSLEPVHESYISNLQKQLEILSGDRVRLDSEL 210
Query: 559 RSTQDIVEDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLR 738
R+ +++VED K +YE EIN RTAAENEFVVLKKDVD AYMNKVEL+AKVD+L D+I F +
Sbjct: 211 RNMREVVEDCKKRYEVEINRRTAAENEFVVLKKDVDAAYMNKVELQAKVDSLTDDIKFFK 270
Query: 739 TLYEEELKELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTS 918
L+E E+ ++QS +SDTSV+LSMDN+R LDLD I+AEV+AQYEEIA +S+AE E Y+
Sbjct: 271 VLFEGEIAQMQSHISDTSVILSMDNNRQLDLDSILAEVRAQYEEIAVKSKAETENMYQCK 330
Query: 919 LR 924
++
Sbjct: 331 IQ 332
Score = 106 bits (264), Expect(2) = 2e-95
Identities = 52/106 (49%), Positives = 74/106 (69%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K + LQA AG+HGDDL++T++EI E+NR +QR+ +EI N+K Q + LE AIA+ E RG+
Sbjct: 330 KIQELQATAGQHGDDLKHTKSEITEINRLIQRIHSEIGNMKKQCSNLETAIADAEQRGDC 389
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D +++AR LRE+Q+LMN+KLALD+EIAT
Sbjct: 390 ALKDARAKLDQLEGALQQAKEELARMLREHQELMNVKLALDMEIAT 435
>ref|NP_032499.2| keratin, type II cytoskeletal 1 [Mus musculus].
Length = 637
Score = 261 bits (666), Expect(2) = 2e-93
Identities = 129/225 (57%), Positives = 177/225 (78%), Gaps = 1/225 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI+EVTINQ+LL PL V++DP I IK+LN+KFASFIDKVRFLEQQN++L+T
Sbjct: 159 GIQEVTINQSLLQPLNVEVDPQIQKVKSQEREQIKSLNDKFASFIDKVRFLEQQNQVLQT 218
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ +T++ L FE I+ LR+++++L+ D R+++EL++ QD+VE+++ KY
Sbjct: 219 KWELLQQVDTTTRTQNLDPFFENYISILRRKVDSLKSDQSRMDSELKNMQDLVEEYRTKY 278
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
EDEIN RT AENEFV +KKDVD AYM KVEL+AK DAL +I F LY+ E+ ++Q+++
Sbjct: 279 EDEINKRTNAENEFVTIKKDVDSAYMTKVELQAKADALQQDIDFFSALYQMEMSQMQTQI 338
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
S+T+VVLSMDN+RSLDLDGII+EVKAQY+ I RS+AEAE +Y++
Sbjct: 339 SETNVVLSMDNNRSLDLDGIISEVKAQYDSICQRSKAEAETFYQS 383
Score = 101 bits (251), Expect(2) = 2e-93
Identities = 51/107 (47%), Positives = 72/107 (67%)
Frame = +3
Query: 912 NKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGE 1091
+K+E LQ AGKHGD +RNT+ EI+E+NR +QRL++EID K Q ++++ I + E RGE
Sbjct: 383 SKYEELQITAGKHGDSVRNTKMEISELNRMIQRLRSEIDGCKKQISQIQQNINDAEQRGE 442
Query: 1092 LAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D +D+AR LR++Q+LMN KLALD+EIAT
Sbjct: 443 KALKDAQNKLNEIEDALSQCKEDLARLLRDFQELMNTKLALDMEIAT 489
>ref|NP_444479.2| keratin, type II cuticular Hb2 [Mus musculus].
Length = 516
Score = 254 bits (650), Expect(2) = 2e-91
Identities = 129/231 (55%), Positives = 176/231 (76%), Gaps = 2/231 (0%)
Frame = +1
Query: 226 GAPVGAG--IREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLE 399
GA G+ I VTIN++LL PL+++IDP++ IK LNN+FASFI+KVRFLE
Sbjct: 81 GATCGSSACITPVTINESLLVPLELEIDPTVQRVKRDEKEQIKCLNNRFASFINKVRFLE 140
Query: 400 QQNKLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIV 579
Q+NKLLETKW +Q+Q+S +S+ P +FE I LR+QL+ + D GRLEAEL S Q+ +
Sbjct: 141 QKNKLLETKWNFMQQQRSCQSNMEP-LFEGYICALRRQLDCVSGDHGRLEAELCSLQEAL 199
Query: 580 EDFKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEEL 759
E +K KYE+E++ R AENEFV LKKDVD A++ K +LE ++AL EI FL+ L+EEE+
Sbjct: 200 EGYKKKYEEELSLRPCAENEFVTLKKDVDTAFLVKADLETNLEALEHEIEFLKALFEEEI 259
Query: 760 KELQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYR 912
LQS++S+TSV++ MDNSR LD+DGI+AE+KAQY++IA+RS+AEAEAWY+
Sbjct: 260 GLLQSQISETSVIVKMDNSRELDVDGIVAEIKAQYDDIASRSKAEAEAWYQ 310
Score = 100 bits (249), Expect(2) = 2e-91
Identities = 52/106 (49%), Positives = 68/106 (64%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
++E L+ AG H D+LRN +NEI EMN+ +QRLQ +I+ +K QR KLE AIA+ E +GE
Sbjct: 312 RYEELRLTAGNHCDNLRNRKNEILEMNKLIQRLQQDIEAVKGQRCKLEGAIAQAEQQGEA 371
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A D QDMA L++YQ++MN KL LDIEIAT
Sbjct: 372 ALTDAKCKLAGLEEALQKAKQDMACLLKQYQEVMNCKLGLDIEIAT 417
>ref|NP_001003667.1| keratin, type II cytoskeletal 1b [Mus musculus].
Length = 572
Score = 257 bits (656), Expect(2) = 5e-91
Identities = 133/225 (59%), Positives = 173/225 (76%), Gaps = 1/225 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI EVTINQ+LL PL +++DP I IKTLNNKFASFIDKVRFLEQQN++L+T
Sbjct: 138 GIHEVTINQSLLEPLHLEVDPEIQRVKTQEREQIKTLNNKFASFIDKVRFLEQQNQVLQT 197
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ ST++S L +FE I+ L++Q++ L + R E+R+ QD+VED+KNKY
Sbjct: 198 KWELLQQVNTSTRTSSLEPVFEEFISQLQRQVDVLTTEQLRQNTEIRNMQDVVEDYKNKY 257
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
EDEIN RT AEN+FVVLKKDVD A+M K +L++KVD L EI+FL+ L++ EL ++Q+ V
Sbjct: 258 EDEINKRTNAENDFVVLKKDVDAAFMGKSDLQSKVDTLYGEINFLKYLFDTELSQIQTHV 317
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
SDT+V+LSMDN+RSLDLD II V+AQYE IA +S+ EAEA Y+T
Sbjct: 318 SDTNVILSMDNNRSLDLDSIIDAVRAQYEIIAQKSKDEAEALYQT 362
Score = 97.1 bits (240), Expect(2) = 5e-91
Identities = 49/110 (44%), Positives = 71/110 (64%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K++ LQ AGKHGDDL+N++ EI+E+NR +QRL+AEI NIK Q + I++ E+
Sbjct: 359 LYQTKYQELQITAGKHGDDLKNSKMEISELNRNIQRLRAEIANIKKQVEGMHGLISDAEE 418
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE A Q+ +D+A+ LR+YQ ++ KL+LD+EIAT
Sbjct: 419 RGERALQNAKQKLQDMEEALQQAKEDLAKLLRDYQAMLGAKLSLDVEIAT 468
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,726,416
Number of extensions: 578185
Number of successful extensions: 3505
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 3298
Number of HSP's successfully gapped: 135
Length of query: 411
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 307
Effective length of database: 12,493,815
Effective search space: 3835601205
Effective search space used: 3835601205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013220
(1234 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005547.3| keratin, type II cytoskeletal 7 [Homo sapiens]. 421 e-157
Alignment gi|NP_149034.2| keratin, type II cuticular Hb4 [Homo sapiens]. 277 e-101
Alignment gi|NP_778238.1| keratin, type II cytoskeletal 73 [Homo sapiens]. 270 1e-98
Alignment gi|NP_001139697.1| keratin, type II cytoskeletal 72 isoform 1 [... 275 2e-98
Alignment gi|NP_542785.1| keratin, type II cytoskeletal 72 isoform 1 [Hom... 275 2e-98
Alignment gi|NP_258259.1| keratin, type II cytoskeletal 71 [Homo sapiens]. 264 2e-97
Alignment gi|NP_006112.3| keratin, type II cytoskeletal 1 [Homo sapiens]. 266 8e-97
Alignment gi|NP_778223.2| keratin, type II cytoskeletal 74 [Homo sapiens]. 256 8e-94
Alignment gi|NP_000414.2| keratin, type II cytoskeletal 2 epidermal [Homo... 259 1e-92
Alignment gi|NP_778253.2| keratin, type II cytoskeletal 1b [Homo sapiens]. 250 2e-91
>ref|NP_005547.3| keratin, type II cytoskeletal 7 [Homo sapiens].
Length = 469
Score = 421 bits (1082), Expect(2) = e-157
Identities = 226/288 (78%), Positives = 240/288 (83%)
Frame = +1
Query: 52 MSVHFSSQVFSSRSAAFPGRGTQGRLSSARLGGLXXXXXXXLYGLXXXXXXXXXXXXYGA 231
MS+HFSS VF+SRSAAF GRG Q RLSSAR GGL LYGL YG
Sbjct: 1 MSIHFSSPVFTSRSAAFSGRGAQVRLSSARPGGLGSSS---LYGLGASRPRVAVRSAYGG 57
Query: 232 PVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNK 411
PVGAGIREVTINQ+LL PL++D DPS+ IKTLNNKFASFIDKVRFLEQQNK
Sbjct: 58 PVGAGIREVTINQSLLAPLRLDADPSLQRVRQEESEQIKTLNNKFASFIDKVRFLEQQNK 117
Query: 412 LLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFK 591
LLETKW LLQEQKS KSSRLP IFEAQIAGLR QLEALQ+DGGRLEAELRS QD+VEDFK
Sbjct: 118 LLETKWTLLQEQKSAKSSRLPDIFEAQIAGLRGQLEALQVDGGRLEAELRSMQDVVEDFK 177
Query: 592 NKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQ 771
NKYEDEINHRTAAENEFVVLKKDVD AYM+KVELEAKVDALNDEI+FLRTL E EL ELQ
Sbjct: 178 NKYEDEINHRTAAENEFVVLKKDVDAAYMSKVELEAKVDALNDEINFLRTLNETELTELQ 237
Query: 772 SKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
S++SDTSVVLSMDNSRSLDLDGIIAEVKAQYEE+A SRAEAEAWY+T
Sbjct: 238 SQISDTSVVLSMDNSRSLDLDGIIAEVKAQYEEMAKCSRAEAEAWYQT 285
Score = 155 bits (392), Expect(2) = e-157
Identities = 81/106 (76%), Positives = 88/106 (83%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
KFETLQAQAGKHGDDLRNTRNEI+EMNRA+QRLQAEIDNIKNQRAKLEAAIAE E+RGEL
Sbjct: 286 KFETLQAQAGKHGDDLRNTRNEISEMNRAIQRLQAEIDNIKNQRAKLEAAIAEAEERGEL 345
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
A +D QDMARQLREYQ+LM++KLALDIEIAT
Sbjct: 346 ALKDARAKQEELEAALQRGKQDMARQLREYQELMSVKLALDIEIAT 391
>ref|NP_149034.2| keratin, type II cuticular Hb4 [Homo sapiens].
Length = 600
Score = 277 bits (708), Expect(2) = e-101
Identities = 143/230 (62%), Positives = 173/230 (75%)
Frame = +1
Query: 226 GAPVGAGIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQ 405
G P I VT+N++LLTPL ++IDP+ IKTLNNKFASFIDKVRFLEQQ
Sbjct: 130 GVPAAPSITAVTVNKSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDKVRFLEQQ 189
Query: 406 NKLLETKWALLQEQKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVED 585
NKLLETKW+ LQEQK +S+ P +FE+ I LR+QLE L D RL+AE QD++E
Sbjct: 190 NKLLETKWSFLQEQKCIRSNLEP-LFESYITNLRRQLEVLVSDQARLQAERNHLQDVLEG 248
Query: 586 FKNKYEDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKE 765
FK KYE+E+ R AENEFV LKKDVD A+MNK +LEA VD L EI FL+TLY EE++
Sbjct: 249 FKKKYEEEVVCRANAENEFVALKKDVDAAFMNKSDLEANVDTLTQEIDFLKTLYMEEIQL 308
Query: 766 LQSKVSDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
LQS +S+TSV++ MDNSR L+LDGIIAEVKAQYEE+A RSRA+AEAWY+T
Sbjct: 309 LQSHISETSVIVKMDNSRDLNLDGIIAEVKAQYEEVARRSRADAEAWYQT 358
Score = 110 bits (276), Expect(2) = e-101
Identities = 59/106 (55%), Positives = 71/106 (66%)
Frame = +3
Query: 915 KFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETEDRGEL 1094
K+E +Q AG+H D+LRN RNEI E+ R +QRL+AEI++ K QRAKLEAA+AE E +GE
Sbjct: 359 KYEEMQVTAGQHCDNLRNIRNEINELTRLIQRLKAEIEHAKAQRAKLEAAVAEAEQQGEA 418
Query: 1095 APQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
D QDMARQL EYQ+LMN KL LDIEIAT
Sbjct: 419 TLSDAKCKLADLECALQQAKQDMARQLCEYQELMNAKLGLDIEIAT 464
>ref|NP_778238.1| keratin, type II cytoskeletal 73 [Homo sapiens].
Length = 540
Score = 270 bits (690), Expect(2) = 1e-98
Identities = 140/228 (61%), Positives = 175/228 (76%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VTIN++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++LET
Sbjct: 103 GIHQVTINKSLLAPLNVELDPEIQKVRAQEREQIKVLNNKFASFIDKVRFLEQQNQVLET 162
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + + L I E I+ LRKQLE L D RL++ELRS +++VED+K +Y
Sbjct: 163 KWELLQQLDLNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRSVREVVEDYKKRY 222
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RT AENEFVVLKKDVD AY +KVEL+AKVDAL+ EI F + LYE E ++QS +
Sbjct: 223 EEEINKRTTAENEFVVLKKDVDAAYTSKVELQAKVDALDGEIKFFKCLYEGETAQIQSHI 282
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SDTS++LSMDN+R+LDLD IIAEV+AQYEEIA +S+AEAEA Y+T +
Sbjct: 283 SDTSIILSMDNNRNLDLDSIIAEVRAQYEEIARKSKAEAEALYQTKFQ 330
Score = 109 bits (272), Expect(2) = 1e-98
Identities = 53/110 (48%), Positives = 77/110 (70%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L KF+ LQ AG+HGDDL++T+NEI+E+ R +QRL++EI+++K Q A LE AIA+ E
Sbjct: 324 LYQTKFQELQLAAGRHGDDLKHTKNEISELTRLIQRLRSEIESVKKQCANLETAIADAEQ 383
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR LREYQ+L+++KL+LDIEIAT
Sbjct: 384 RGDCALKDARAKLDELEGALQQAKEELARMLREYQELLSVKLSLDIEIAT 433
>ref|NP_001139697.1| keratin, type II cytoskeletal 72 isoform 1 [Homo sapiens].
Length = 511
Score = 275 bits (704), Expect(2) = 2e-98
Identities = 143/228 (62%), Positives = 177/228 (77%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++LET
Sbjct: 96 GIPQVTVNKSLLAPLNVEMDPEIQRVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 155
Query: 424 KWALLQEQKSTKSSR-LPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + L I+E I+ L+KQLE L DG RL++ELR+ QD+VED+K +Y
Sbjct: 156 KWNLLQQLDLNNCRKNLEPIYEGYISNLQKQLEMLSGDGVRLDSELRNMQDLVEDYKKRY 215
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E EIN RTAAENEFVVLKKDVD AYMNKVEL+AKVD+L DEI F + LYE E+ ++QS +
Sbjct: 216 EVEINRRTAAENEFVVLKKDVDAAYMNKVELQAKVDSLTDEIKFFKCLYEGEITQIQSHI 275
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SDTS+VLSMDN+R LDLD IIAEV+AQYEEIA +S+AEAE Y+T ++
Sbjct: 276 SDTSIVLSMDNNRDLDLDSIIAEVRAQYEEIALKSKAEAETLYQTKIQ 323
Score = 103 bits (257), Expect(2) = 2e-98
Identities = 52/110 (47%), Positives = 74/110 (67%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K + LQ AG+HGDDL+ T+ EI+E+NR +QR+++EI N+K Q A LE AIA+ E
Sbjct: 317 LYQTKIQELQVTAGQHGDDLKLTKAEISELNRLIQRIRSEIGNVKKQCADLETAIADAEQ 376
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR LREYQ+L+++KLALD+EIAT
Sbjct: 377 RGDCALKDARAKLDELEGALHQAKEELARMLREYQELVSLKLALDMEIAT 426
>ref|NP_542785.1| keratin, type II cytoskeletal 72 isoform 1 [Homo sapiens].
Length = 511
Score = 275 bits (704), Expect(2) = 2e-98
Identities = 143/228 (62%), Positives = 177/228 (77%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++LET
Sbjct: 96 GIPQVTVNKSLLAPLNVEMDPEIQRVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 155
Query: 424 KWALLQEQKSTKSSR-LPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + L I+E I+ L+KQLE L DG RL++ELR+ QD+VED+K +Y
Sbjct: 156 KWNLLQQLDLNNCRKNLEPIYEGYISNLQKQLEMLSGDGVRLDSELRNMQDLVEDYKKRY 215
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E EIN RTAAENEFVVLKKDVD AYMNKVEL+AKVD+L DEI F + LYE E+ ++QS +
Sbjct: 216 EVEINRRTAAENEFVVLKKDVDAAYMNKVELQAKVDSLTDEIKFFKCLYEGEITQIQSHI 275
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SDTS+VLSMDN+R LDLD IIAEV+AQYEEIA +S+AEAE Y+T ++
Sbjct: 276 SDTSIVLSMDNNRDLDLDSIIAEVRAQYEEIALKSKAEAETLYQTKIQ 323
Score = 103 bits (257), Expect(2) = 2e-98
Identities = 52/110 (47%), Positives = 74/110 (67%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K + LQ AG+HGDDL+ T+ EI+E+NR +QR+++EI N+K Q A LE AIA+ E
Sbjct: 317 LYQTKIQELQVTAGQHGDDLKLTKAEISELNRLIQRIRSEIGNVKKQCADLETAIADAEQ 376
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR LREYQ+L+++KLALD+EIAT
Sbjct: 377 RGDCALKDARAKLDELEGALHQAKEELARMLREYQELVSLKLALDMEIAT 426
>ref|NP_258259.1| keratin, type II cytoskeletal 71 [Homo sapiens].
Length = 523
Score = 264 bits (674), Expect(2) = 2e-97
Identities = 135/228 (59%), Positives = 174/228 (76%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL PL V++DP I IK LNNKFASFIDKVRFLEQQN++LET
Sbjct: 101 GIHQVTVNESLLAPLNVELDPEIQKVRAQEREQIKALNNKFASFIDKVRFLEQQNQVLET 160
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + + L I E I+ LRKQLE L D RL++ELR+ +D+VED+K +Y
Sbjct: 161 KWELLQQLDLNNCKNNLEPILEGYISNLRKQLETLSGDRVRLDSELRNVRDVVEDYKKRY 220
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E+EIN RTAAENEFV+LKKDVD AY NKVEL+AKV++++ EI F R L+E E+ ++QS +
Sbjct: 221 EEEINKRTAAENEFVLLKKDVDAAYANKVELQAKVESMDQEIKFFRCLFEAEITQIQSHI 280
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
SD SV+LSMDN+R+LDLD II EV+ QYEEIA +S+AEAEA Y+T +
Sbjct: 281 SDMSVILSMDNNRNLDLDSIIDEVRTQYEEIALKSKAEAEALYQTKFQ 328
Score = 112 bits (279), Expect(2) = 2e-97
Identities = 54/110 (49%), Positives = 77/110 (70%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L KF+ LQ AG+HGDDL+NT+NEI+E+ R +QR+++EI+N+K Q + LE AIA+ E
Sbjct: 322 LYQTKFQELQLAAGRHGDDLKNTKNEISELTRLIQRIRSEIENVKKQASNLETAIADAEQ 381
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR LREYQ+LM++KLALD+EIAT
Sbjct: 382 RGDNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIAT 431
>ref|NP_006112.3| keratin, type II cytoskeletal 1 [Homo sapiens].
Length = 644
Score = 266 bits (680), Expect(2) = 8e-97
Identities = 135/225 (60%), Positives = 179/225 (79%), Gaps = 1/225 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI+EVTINQ+LL PL V+IDP I IK+LNN+FASFIDKVRFLEQQN++L+T
Sbjct: 151 GIQEVTINQSLLQPLNVEIDPEIQKVKSREREQIKSLNNQFASFIDKVRFLEQQNQVLQT 210
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ ST++ L FE+ I LR++++ L+ D RL++EL++ QD+VED++NKY
Sbjct: 211 KWELLQQVDTSTRTHNLEPYFESFINNLRRRVDQLKSDQSRLDSELKNMQDMVEDYRNKY 270
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
EDEIN RT AENEFV +KKDVD AYM KV+L+AK+D L EI FL LY+ EL ++Q+++
Sbjct: 271 EDEINKRTNAENEFVTIKKDVDGAYMTKVDLQAKLDNLQQEIDFLTALYQAELSQMQTQI 330
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
S+T+V+LSMDN+RSLDLD IIAEVKAQYE+IA +S+AEAE+ Y++
Sbjct: 331 SETNVILSMDNNRSLDLDSIIAEVKAQYEDIAQKSKAEAESLYQS 375
Score = 107 bits (267), Expect(2) = 8e-97
Identities = 53/110 (48%), Positives = 76/110 (69%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L +K+E LQ AG+HGD +RN++ EI+E+NR +QRL++EIDN+K Q + L+ +I++ E
Sbjct: 372 LYQSKYEELQITAGRHGDSVRNSKIEISELNRVIQRLRSEIDNVKKQISNLQQSISDAEQ 431
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE A +D +D+AR LR+YQ+LMN KLALD+EIAT
Sbjct: 432 RGENALKDAKNKLNDLEDALQQAKEDLARLLRDYQELMNTKLALDLEIAT 481
>ref|NP_778223.2| keratin, type II cytoskeletal 74 [Homo sapiens].
Length = 529
Score = 256 bits (654), Expect(2) = 8e-94
Identities = 134/228 (58%), Positives = 170/228 (74%), Gaps = 1/228 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI +VT+N++LL PL V++DP I IK LN+KFASFIDKVRFLEQQN++LET
Sbjct: 111 GIHQVTVNKSLLAPLNVELDPEIQKVRAQEREQIKVLNDKFASFIDKVRFLEQQNQVLET 170
Query: 424 KWALLQEQKSTKSSR-LPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ + L I E I+ LRKQLE L D RL++ELRS +D+VED+K +Y
Sbjct: 171 KWELLQQLDLNNCKKNLEPILEGYISNLRKQLETLSGDRVRLDSELRSMRDLVEDYKKRY 230
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
E EIN RT AENEFVVLKKD D AY KVEL+AKVD+L+ EI FL+ LY+ E+ ++Q+
Sbjct: 231 EVEINRRTTAENEFVVLKKDADAAYAVKVELQAKVDSLDKEIKFLKCLYDAEIAQIQTHA 290
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRTSLR 924
S+TSV+LSMDN+R LDLD IIAEV+ YEEIA +S+AEAEA Y+T ++
Sbjct: 291 SETSVILSMDNNRDLDLDSIIAEVRMHYEEIALKSKAEAEALYQTKIQ 338
Score = 107 bits (267), Expect(2) = 8e-94
Identities = 53/110 (48%), Positives = 74/110 (67%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K + LQ A +HGDDL++TR+E+ E+NR +QR++ EI N+K QRA LE AIA+ E
Sbjct: 332 LYQTKIQELQLAASRHGDDLKHTRSEMVELNRLIQRIRCEIGNVKKQRASLETAIADAEQ 391
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RG+ A +D +++AR LREYQ+LM++KLALD+EIAT
Sbjct: 392 RGDNALKDAQAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIAT 441
>ref|NP_000414.2| keratin, type II cytoskeletal 2 epidermal [Homo sapiens].
Length = 639
Score = 259 bits (661), Expect(2) = 1e-92
Identities = 134/225 (59%), Positives = 166/225 (73%), Gaps = 1/225 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI EV++NQ+LL PL V +DP I IKTLNNKFASFIDKVRFLEQQN++L+T
Sbjct: 149 GIHEVSVNQSLLQPLNVKVDPEIQNVKAQEREQIKTLNNKFASFIDKVRFLEQQNQVLQT 208
Query: 424 KWALLQEQK-STKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ T+ L IF+ I L++ L+ L + +EL + QD+VED+K KY
Sbjct: 209 KWELLQQMNVGTRPINLEPIFQGYIDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKY 268
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
EDEIN RTAAEN+FV LKKDVD AYM KVEL++KVD LN EI FL+ LY+ E+ ++ V
Sbjct: 269 EDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLKVLYDAEISQIHQSV 328
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
+DT+V+LSMDNSR+LDLD IIAEVKAQYEEIA RS+ EAEA Y +
Sbjct: 329 TDTNVILSMDNSRNLDLDSIIAEVKAQYEEIAQRSKEEAEALYHS 373
Score = 100 bits (250), Expect(2) = 1e-92
Identities = 51/110 (46%), Positives = 71/110 (64%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L +K+E LQ G+HGD L+ + EI+E+NR +QRLQ EI ++K Q ++ AIA+ E
Sbjct: 370 LYHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNVQDAIADAEQ 429
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE A +D +D+AR LR+YQ+LMN+KLALD+EIAT
Sbjct: 430 RGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIAT 479
>ref|NP_778253.2| keratin, type II cytoskeletal 1b [Homo sapiens].
Length = 578
Score = 250 bits (639), Expect(2) = 2e-91
Identities = 129/225 (57%), Positives = 170/225 (75%), Gaps = 1/225 (0%)
Frame = +1
Query: 244 GIREVTINQNLLTPLQVDIDPSIXXXXXXXXXXIKTLNNKFASFIDKVRFLEQQNKLLET 423
GI+EVTINQ+LL PL +++DP I I LNNKFASFIDKVRFLEQQN++L+T
Sbjct: 135 GIQEVTINQSLLEPLHLEVDPEIQRIKTQEREQIMVLNNKFASFIDKVRFLEQQNQVLQT 194
Query: 424 KWALLQE-QKSTKSSRLPGIFEAQIAGLRKQLEALQLDGGRLEAELRSTQDIVEDFKNKY 600
KW LLQ+ ST ++ L + E I LR+Q++ L + R AE+RS QD+VED+K+KY
Sbjct: 195 KWELLQQVNTSTGTNNLEPLLENYIGDLRRQVDLLSAEQMRQNAEVRSMQDVVEDYKSKY 254
Query: 601 EDEINHRTAAENEFVVLKKDVDIAYMNKVELEAKVDALNDEISFLRTLYEEELKELQSKV 780
EDEIN RT +EN+FVVLKKDVD AY++KV+LE++VD L E++FL+ L+ EL ++Q+ +
Sbjct: 255 EDEINKRTGSENDFVVLKKDVDAAYVSKVDLESRVDTLTGEVNFLKYLFLTELSQVQTHI 314
Query: 781 SDTSVVLSMDNSRSLDLDGIIAEVKAQYEEIANRSRAEAEAWYRT 915
SDT+V+LSMDN+RSLDLD II V+ QYE IA RS+ EAEA Y+T
Sbjct: 315 SDTNVILSMDNNRSLDLDSIIDAVRTQYELIAQRSKDEAEALYQT 359
Score = 105 bits (262), Expect(2) = 2e-91
Identities = 51/110 (46%), Positives = 75/110 (68%)
Frame = +3
Query: 903 LVPNKFETLQAQAGKHGDDLRNTRNEIAEMNRAVQRLQAEIDNIKNQRAKLEAAIAETED 1082
L K++ LQ AG+HGDDL+N++ EIAE+NR VQRLQAEI N+K Q ++++ I++ E+
Sbjct: 356 LYQTKYQELQITAGRHGDDLKNSKMEIAELNRTVQRLQAEISNVKKQIEQMQSLISDAEE 415
Query: 1083 RGELAPQDXXXXXXXXXXXXXXXXQDMARQLREYQDLMNIKLALDIEIAT 1232
RGE A QD +++AR LR+YQ ++ +KL+LD+EIAT
Sbjct: 416 RGEQALQDAWQKLQDLEEALQQSKEELARLLRDYQAMLGVKLSLDVEIAT 465
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,917,138
Number of extensions: 710132
Number of successful extensions: 4267
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 4068
Number of HSP's successfully gapped: 132
Length of query: 411
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,835,944
Effective search space: 4539798864
Effective search space used: 4539798864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013220
(1234 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893912.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 392 e-106
gb|GL896034.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 283 1e-73
gb|GL896421.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 254 1e-64
Sscrofa_Chr05 216 2e-53
gb|GL894089.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 184 8e-44
gb|GL896273.1| Sus scrofa unplaced genomic scaffold chrU_scaffold63 113 2e-22
gb|GL896284.1| Sus scrofa unplaced genomic scaffold chrU_scaffold64 105 6e-20
Sscrofa_Chr10 66 5e-08
Sscrofa_Chr12 64 2e-07
Sscrofa_Chr04 60 3e-06
>gb|GL893912.1| Sus scrofa unplaced genomic scaffold chrU_scaffold263
Length = 361
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Minus
Query: 402 gcagaacaagctgctggagaccaagtgggcgctgctgcaggagcagaagtcgaccaagag 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcagaacaagctgctggagaccaagtgggcgctgctgcaggagcagaagtcgaccaagag 302
Query: 462 cagccgccttcctggcatctttgaggcccagattgctggcctgcggaagcagcttgaagc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagccgccttcctggcatctttgaggcccagattgctggcctgcggaagcagcttgaagc 242
Query: 522 actgcagctggatgggggccgcctggaggcggagcttcggagcacgcaggacatcgtgga 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 actgcagctggatgggggccgcctggaggcggagcttcggagcacgcaggacatcgtgga 182
Query: 582 agacttcaagaataagta 599
||||||||||||||||||
Sbjct: 181 agacttcaagaataagta 164
>gb|GL896034.1| Sus scrofa unplaced genomic scaffold chrU_scaffold454
Length = 1833
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 1 gcgagttcggccctctgtcgcctgccgctcagtccagcccgcacagccagcatgtccgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gcgagttcggccctctgtcgcctgccgctcagtccagcccgcacagccagcatgtccgtc 63
Query: 61 cacttcagctcccaggtcttcagctcgcgctcggccgccttcccggggcgcggcacccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacttcagctcccaggtcttcagctcgcgctcggccgccttcccggggcgcggcacccag 123
Query: 121 gggcgcctgagctcagcgcgcct 143
|||||||||||||||||||||||
Sbjct: 124 gggcgcctgagctcagcgcgcct 146
Score = 278 bits (140), Expect = 7e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 248 tccgcgaggtcaccatcaatcagaacctgctgaccccgctgcaggtggacatcgacccct 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tccgcgaggtcaccatcaatcagaacctgctgaccccgctgcaggtggacatcgacccct 308
Query: 308 ccatccagcaggtgcgccaggaggagcgggagcagatcaagaccctcaacaacaagttcg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccatccagcaggtgcgccaggaggagcgggagcagatcaagaccctcaacaacaagttcg 368
Query: 368 cctcgttcatcgacaaggtg 387
||||||||||||||||||||
Sbjct: 369 cctcgttcatcgacaaggtg 388
>gb|GL896421.1| Sus scrofa unplaced genomic scaffold chrU_scaffold763
Length = 1202
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 916 agtttgagaccctccaggcccaggctggaaagcacggggacgacctccggaatacccgga 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agtttgagaccctccaggcccaggctggaaagcacggggacgacctccggaatacccgga 634
Query: 976 atgagattgcggagatgaaccgagccgtccagaggctgcaggcggagatcgacaacatta 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atgagattgcggagatgaaccgagccgtccagaggctgcaggcggagatcgacaacatta 694
Query: 1036 agaaccag 1043
||||||||
Sbjct: 695 agaaccag 702
>Sscrofa_Chr05
|| Length = 111506441
Score = 216 bits (109), Expect = 2e-53
Identities = 112/113 (99%)
Strand = Plus / Minus
Query: 784 gacacctccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18665506 gacacctccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatc 18665447
Query: 844 gccgaggtcaaggcccaatacgaggagatcgccaaccgcagccgggccgaggc 896
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18665446 gccgaggtcaaggcccagtacgaggagatcgccaaccgcagccgggccgaggc 18665394
Score = 145 bits (73), Expect = 7e-32
Identities = 118/133 (88%)
Strand = Plus / Plus
Query: 778 gtctcggacacctccgtggtcctctccatggacaacagccgctccctggacctggacggc 837
||||| ||||| || ||||||||||| |||||||||| |||| ||||||||||||| ||
Sbjct: 18369146 gtctcagacacatctgtggtcctctctatggacaacaaccgcaacctggacctggacagc 18369205
Query: 838 atcatcgccgaggtcaaggcccaatacgaggagatcgccaaccgcagccgggccgaggcc 897
||||||||||||||||||||||| |||||||| ||||||||||||||||| | || |||
Sbjct: 18369206 atcatcgccgaggtcaaggcccagtacgaggacatcgccaaccgcagccgcacggaagcc 18369265
Query: 898 gaggcctggtacc 910
||| |||||||||
Sbjct: 18369266 gagtcctggtacc 18369278
Score = 141 bits (71), Expect = 1e-30
Identities = 113/127 (88%)
Strand = Plus / Minus
Query: 784 gacacctccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatc 843
||||| || |||||||| ||||||||||||| |||| ||||||||||||| ||||||||
Sbjct: 18281878 gacacatcggtggtcctgtccatggacaacaaccgcagcctggacctggacagcatcatc 18281819
Query: 844 gccgaggtcaaggcccaatacgaggagatcgccaaccgcagccgggccgaggccgaggcc 903
||||||||||| || || || ||||| |||||||||||||||||||||||||| ||| ||
Sbjct: 18281818 gccgaggtcaaagcacagtatgaggacatcgccaaccgcagccgggccgaggctgagtcc 18281759
Query: 904 tggtacc 910
|||||||
Sbjct: 18281758 tggtacc 18281752
Score = 133 bits (67), Expect = 3e-28
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 1125 gagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtac 1184
|||||||||| ||||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct: 18157290 gagctggaggacgccctgcagaaggccaagcaggacatggcgcgacagctgcgtgagtac 18157349
Query: 1185 caggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 18157350 caggagctgatgaacgtcaagctggccctggacatcgagatcgccaccta 18157399
Score = 133 bits (67), Expect = 3e-28
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 1125 gagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtac 1184
|||||||||| ||||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct: 18263529 gagctggaggacgccctgcagaaggccaagcaggacatggcgcgacagctgcgtgagtac 18263470
Query: 1185 caggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 18263469 caggagctgatgaacgtcaagctggccctggacatcgagatcgccaccta 18263420
Score = 127 bits (64), Expect = 2e-26
Identities = 124/144 (86%)
Strand = Plus / Plus
Query: 244 ggcatccgcgaggtcaccatcaatcagaacctgctgaccccgctgcaggtggacatcgac 303
||||||| |||||||||||||| ||||| || || ||||| ||| | || | ||||||
Sbjct: 18200990 ggcatccaagaggtcaccatcaaccagaatctcctcacccctctgaacctgcaaatcgac 18201049
Query: 304 ccctccatccagcaggtgcgccaggaggagcgggagcagatcaagaccctcaacaacaag 363
||| ||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 18201050 cccaccatccagcgggtgaggaccgaggagcgggagcagatcaagaccctcaacaacaag 18201109
Query: 364 ttcgcctcgttcatcgacaaggtg 387
|||||||| |||||||||||||||
Sbjct: 18201110 ttcgcctccttcatcgacaaggtg 18201133
Score = 121 bits (61), Expect = 1e-24
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 243 gggcatccgcgaggtcaccatcaatcagaacctgctgaccccgctgcaggtggacatcga 302
|||||||| |||||||| |||| |||| || |||||||| || || |||| |||||
Sbjct: 18093012 gggcatccaggaggtcactgtcaaccagagtctcctgacccccctccacctggagatcga 18092953
Query: 303 cccctccatccagcaggtgcgccaggaggagcgggagcagatcaagaccctcaacaacaa 362
|| ||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 18092952 tccatccctccagcgggtgcggaaggaggagcgggagcagatcaagactctcaacaacaa 18092893
Query: 363 gttcgcctcgttcatcgacaaggtg 387
||||||||| |||||||||||||||
Sbjct: 18092892 gttcgcctccttcatcgacaaggtg 18092868
Score = 121 bits (61), Expect = 1e-24
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 243 gggcatccgcgaggtcaccatcaatcagaacctgctgaccccgctgcaggtggacatcga 302
|||||||| |||||||| |||| |||| || |||||||| || || |||| |||||
Sbjct: 18272337 gggcatccaggaggtcactgtcaaccagagtctcctgacccccctccacctggagatcga 18272278
Query: 303 cccctccatccagcaggtgcgccaggaggagcgggagcagatcaagaccctcaacaacaa 362
|| ||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 18272277 tccatccctccagcgggtgcggaaggaggagcgggagcagatcaagactctcaacaacaa 18272218
Query: 363 gttcgcctcgttcatcgacaaggtg 387
||||||||| |||||||||||||||
Sbjct: 18272217 gttcgcctccttcatcgacaaggtg 18272193
Score = 117 bits (59), Expect = 1e-23
Identities = 114/133 (85%)
Strand = Plus / Minus
Query: 1102 aggatgctcgcgccaagcangaggagctggaggccgccctgcancgggccaagcaggaca 1161
||||||| || ||||||| | ||| ||||||| |||||||| ||||||||||||||
Sbjct: 18100123 aggatgcacgggccaagctggtggacctggaggatgccctgcagaaggccaagcaggaca 18100064
Query: 1162 tggccaggcagctgcgcgagtaccaggacctcatgaacatcaagctggccctggacatcg 1221
|||| ||| ||||| |||||||||||| |||||||||||||||||||| |||||| | |
Sbjct: 18100063 tggcacggctgctgcacgagtaccaggagctcatgaacatcaagctggctctggacgtgg 18100004
Query: 1222 agatcgccaccta 1234
|||||||||||||
Sbjct: 18100003 agatcgccaccta 18099991
Score = 117 bits (59), Expect = 1e-23
Identities = 144/173 (83%)
Strand = Plus / Minus
Query: 1062 gccatcgccgaaactgaagaccgtggggagctggcccctcaggatgctcgcgccaagcan 1121
||||||||||| | ||| | ||||| || ||||||| ||||||| || |||||||
Sbjct: 18279133 gccatcgccgacgcagaacagcgtggagaactggccctcaaggatgcacgggccaagctg 18279074
Query: 1122 gaggagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgag 1181
| ||| ||||||| |||||||| |||||||||||||||||| ||| ||||| ||||
Sbjct: 18279073 gtggacctggaggatgccctgcagaaggccaagcaggacatggcacggctgctgcacgag 18279014
Query: 1182 taccaggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
|||||||| |||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 18279013 taccaggagctcatgaacatcaagctggctctggacgtggagatcgccaccta 18278961
Score = 117 bits (59), Expect = 1e-23
Identities = 97/110 (88%)
Strand = Plus / Plus
Query: 1125 gagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtac 1184
|||||||||| |||||||| ||||||||||||||||||| ||| |||| | ||||||
Sbjct: 18370056 gagctggaggatgccctgcagaaggccaagcaggacatggcccggctgctgagggagtac 18370115
Query: 1185 caggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||||| |||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 18370116 caggagctcatgaacaccaagctggccctggacgtggagatcgccaccta 18370165
Score = 117 bits (59), Expect = 1e-23
Identities = 114/133 (85%)
Strand = Plus / Minus
Query: 1102 aggatgctcgcgccaagcangaggagctggaggccgccctgcancgggccaagcaggaca 1161
||||||| || ||||||| || |||||||||| |||||||| | ||||||| ||||
Sbjct: 18443047 aggatgcccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaggagc 18442988
Query: 1162 tggccaggcagctgcgcgagtaccaggacctcatgaacatcaagctggccctggacatcg 1221
||||| || |||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct: 18442987 tggcccggatgctgcgcgagtaccaggagctcatgagcacaaagctggccctggacatcg 18442928
Query: 1222 agatcgccaccta 1234
|||||||||||||
Sbjct: 18442927 agatcgccaccta 18442915
Score = 115 bits (58), Expect = 6e-23
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 298 atcgacccctccatccagcaggtgcgccaggaggagcgggagcagatcaagaccctcaac 357
||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 18366405 atcgaccccaccatccagcgggtgaggaccgaggagcgggagcagatcaagaccctcaac 18366464
Query: 358 aacaagttcgcctcgttcatcgacaaggtg 387
|||||||||||||| |||||||||||||||
Sbjct: 18366465 aacaagttcgcctccttcatcgacaaggtg 18366494
Score = 113 bits (57), Expect = 2e-22
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 298 atcgacccctccatccagcaggtgcgccaggaggagcgggagcagatcaagaccctcaac 357
||||| ||| ||||||||| |||||| | ||||||||||| ||||||||||||||||||
Sbjct: 18285233 atcgatcccaccatccagcgggtgcggaaagaggagcgggaacagatcaagaccctcaac 18285174
Query: 358 aacaagttcgcctcgttcatcgacaaggt 386
|||||||||||||| ||||||||||||||
Sbjct: 18285173 aacaagttcgcctccttcatcgacaaggt 18285145
Score = 109 bits (55), Expect = 4e-21
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 1125 gagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtac 1184
|||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct: 18204653 gagctggaggatgccctgcagaaggccaagcaggacatggccaggctgctgaaggagtac 18204712
Query: 1185 caggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||||| |||||||||| |||||||||||||||| | ||||| ||||||||
Sbjct: 18204713 caggagctcatgaacaccaagctggccctggacgtggagattgccaccta 18204762
Score = 109 bits (55), Expect = 4e-21
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 656 aggatgtggatatcgcctacatgaacaaggtggagttggaggccaaggtggacgccctga 715
||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct: 18588213 aggatgtggatgctgcctacatgaacaaggtggagttggaggccaaggtggatggcctta 18588154
Query: 716 atgatgagatcagcttcctcaggaccctcta 746
|||||||||||| |||||| |||| ||||||
Sbjct: 18588153 atgatgagatcaacttcctgaggatcctcta 18588123
Score = 107 bits (54), Expect = 1e-20
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 310 atccagcaggtgcgccaggaggagcgggagcagatcaagaccctcaacaacaagttcgcc 369
|||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 18612743 atccggcaggtgcgcacgcaggagcgggagcagatcaagaccctcaacgacaagttcgcc 18612684
Query: 370 tcgttcatcgacaaggtg 387
|| |||||||||||||||
Sbjct: 18612683 tccttcatcgacaaggtg 18612666
Score = 105 bits (53), Expect = 6e-20
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 1131 gaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtaccaggac 1190
|||| |||||| || | |||||||||||||||||| | |||||||| |||||||||||
Sbjct: 18013677 gagggcgcccttcagcaggccaagcaggacatggcgcgccagctgcgtgagtaccaggag 18013736
Query: 1191 ctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
|| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 18013737 ctgatgaatgtcaagttggccctggacatcgagatcgccaccta 18013780
Score = 105 bits (53), Expect = 6e-20
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgggcgctgctgcagg 442
||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 18610813 aggtgcggttcctggagcagcagaataaggtgctggagaccaagtgggtgctgctgcagg 18610754
Query: 443 agcag 447
|||||
Sbjct: 18610753 agcag 18610749
Score = 101 bits (51), Expect = 9e-19
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 1137 gccctgcancgggccaagcaggacatggccaggcagctgcgcgagtaccaggacctcatg 1196
|||||||| | ||||||| ||||| ||||| ||| |||||| || ||||||| |||||||
Sbjct: 18603928 gccctgcaccaggccaaggaggacctggcccggctgctgcgtgactaccaggccctcatg 18603869
Query: 1197 aacatcaagctggccctggacatcgagatcgccaccta 1234
||| ||||||||||||||||| | ||||||||||||||
Sbjct: 18603868 aacgtcaagctggccctggacgtggagatcgccaccta 18603831
Score = 101 bits (51), Expect = 9e-19
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 1125 gagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtac 1184
|||||||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct: 18664331 gagctggaggccgccctgagaaccgccaagcaggacatggcgcggcagctgcgtgagtac 18664272
Query: 1185 caggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||||| || ||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 18664271 caggaactgatgaatgtcaagctggccctggacgtggagatcgccaccta 18664222
Score = 97.6 bits (49), Expect = 1e-17
Identities = 79/89 (88%)
Strand = Plus / Minus
Query: 784 gacacctccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatc 843
||||| ||||| || |||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 18572315 gacacatccgtcgttctctccatggacaacaatcgcttcctggacctggatagcatcatt 18572256
Query: 844 gccgaggtcaaggcccaatacgaggagat 872
||||||||||||||||| |||||||||||
Sbjct: 18572255 gccgaggtcaaggcccagtacgaggagat 18572227
Score = 95.6 bits (48), Expect = 5e-17
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 779 tctcggacacctccgtggtcctctccatggacaacagccgctccctggacctggacggca 838
|||| ||||| || |||||||||||||||||||||| |||| ||||||||||||| |||
Sbjct: 18203077 tctcagacacgtctgtggtcctctccatggacaacaaccgcaacctggacctggacagca 18203136
Query: 839 tcatcgccgaggtcaaggcccaatacgaggagatcgccaaccgcagccgggccgaggccg 898
||||||| || ||||| |||||||| ||||| || || | | |||||||| ||||| |
Sbjct: 18203137 tcatcgctgaagtcaaagcccaatatgaggacattgctcagaggagccgggctgaggctg 18203196
Query: 899 aggcctggtacc 910
|| |||||||||
Sbjct: 18203197 agtcctggtacc 18203208
Score = 93.7 bits (47), Expect = 2e-16
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 1148 ggccaagcaggacatggccaggcagctgcgcgagtaccaggacctcatgaacatcaagct 1207
||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||
Sbjct: 18186942 ggccaagcaggacatggccaggctgctgaaggagtaccaggagctcatgaacgccaagct 18187001
Query: 1208 ggccctggacatcgagatcgccaccta 1234
|||||||||| | ||||| ||||||||
Sbjct: 18187002 ggccctggacgtggagattgccaccta 18187028
Score = 93.7 bits (47), Expect = 2e-16
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgggcgctgctgcag 441
|||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct: 18395118 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcag 18395060
Score = 93.7 bits (47), Expect = 2e-16
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgggcgctgctgcag 441
|||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct: 18449183 aggtgcggttcctggagcagcagaaccaggtgctggagaccaagtgggagctgctgcag 18449125
Score = 93.7 bits (47), Expect = 2e-16
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 329 aggagcgggagcagatcaagaccctcaacaacaagttcgcctcgttcatcgacaaggtg 387
||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 18574949 aggagcgggagcagatcaagaccctcaacaacaagttcgcctccttcattgataaggtg 18574891
Score = 91.7 bits (46), Expect = 9e-16
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 1127 gctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtacca 1186
||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct: 18124083 gctggaggccgccttgcagcgggccaagcaggacatggtgcggcagctgcgtgagtacca 18124024
Query: 1187 ggacctcatgaacatcaagctggccctggacatcgagatcgccac 1231
||| ||||||| ||| ||||| |||||| | |||||||||||
Sbjct: 18124023 ggagctcatgattgtcaggctgggcctggattttgagatcgccac 18123979
Score = 89.7 bits (45), Expect = 3e-15
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgggcgctgctgcagg 442
||||||||||||||||||||||||||||| | ||||| ||||||||| | ||||||||||
Sbjct: 18367061 aggtgcggttcctggagcagcagaacaaggtcctggacaccaagtggaccctgctgcagg 18367120
Query: 443 agcag 447
|||||
Sbjct: 18367121 agcag 18367125
Score = 89.7 bits (45), Expect = 3e-15
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 331 gagcgggagcagatcaagaccctcaacaacaagttcgcctcgttcatcgacaaggtg 387
||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||
Sbjct: 18591977 gagcgggagcagatcaagatcctcaacgacaagttcgcctccttcatcgacaaggtg 18591921
Score = 87.7 bits (44), Expect = 1e-14
Identities = 104/124 (83%)
Strand = Plus / Plus
Query: 787 acctccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatcgcc 846
||||| ||| |||| ||||||||||||| |||| |||||||| ||| |||||||| ||
Sbjct: 18155537 acctctgtgatcctgtccatggacaacaaccgcaagctggacctagacagcatcatctcc 18155596
Query: 847 gaggtcaaggcccaatacgaggagatcgccaaccgcagccgggccgaggccgaggcctgg 906
|||||||||||||| || ||||| || |||||||| || ||||| ||||| ||| | |||
Sbjct: 18155597 gaggtcaaggcccagtatgaggacattgccaaccgtagtcgggctgaggctgagtcttgg 18155656
Query: 907 tacc 910
||||
Sbjct: 18155657 tacc 18155660
Score = 87.7 bits (44), Expect = 1e-14
Identities = 104/124 (83%)
Strand = Plus / Minus
Query: 787 acctccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatcgcc 846
||||| ||| |||| ||||||||||||| |||| |||||||| ||| |||||||| ||
Sbjct: 18265454 acctctgtgatcctgtccatggacaacaaccgcaagctggacctagacagcatcatctcc 18265395
Query: 847 gaggtcaaggcccaatacgaggagatcgccaaccgcagccgggccgaggccgaggcctgg 906
|||||||||||||| || ||||| || |||||||| || ||||| ||||| ||| | |||
Sbjct: 18265394 gaggtcaaggcccagtatgaggacattgccaaccgtagtcgggctgaggctgagtcttgg 18265335
Query: 907 tacc 910
||||
Sbjct: 18265334 tacc 18265331
Score = 85.7 bits (43), Expect = 5e-14
Identities = 110/133 (82%)
Strand = Plus / Minus
Query: 1102 aggatgctcgcgccaagcangaggagctggaggccgccctgcancgggccaagcaggaca 1161
||||||| || ||||||| || |||||||||| |||||||| | ||||||| | ||
Sbjct: 18480111 aggatgcccgggccaagctggacgagctggagggtgccctgcaccaggccaaggaagagc 18480052
Query: 1162 tggccaggcagctgcgcgagtaccaggacctcatgaacatcaagctggccctggacatcg 1221
||||| || |||||| ||||||||||| ||||||| | | ||||||||| ||||||| |
Sbjct: 18480051 tggcccggatgctgcgggagtaccaggaactcatgagcctgaagctggccttggacatgg 18479992
Query: 1222 agatcgccaccta 1234
|||||||||||||
Sbjct: 18479991 agatcgccaccta 18479979
Score = 85.7 bits (43), Expect = 5e-14
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 329 aggagcgggagcagatcaagaccctcaacaacaagttcgcctcgttcatcgacaaggtg 387
||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||
Sbjct: 18548728 aggagcgggagcagatcaagaccctcaacgacaagttcgcctccttcattgataaggtg 18548670
Score = 83.8 bits (42), Expect = 2e-13
Identities = 96/114 (84%)
Strand = Plus / Minus
Query: 797 tcctctccatggacaacagccgctccctggacctggacggcatcatcgccgaggtcaagg 856
|||||||||||||||||| |||| ||| ||||||||| |||||||||| ||||| ||||
Sbjct: 18605640 tcctctccatggacaacaaccgcaaccttgacctggacagcatcatcgctgaggttaagg 18605581
Query: 857 cccaatacgaggagatcgccaaccgcagccgggccgaggccgaggcctggtacc 910
|||| || ||| |||| ||| | | ||| |||| ||||| |||||||||||||
Sbjct: 18605580 cccagtatgagcagattgcccagagaagcagggctgaggctgaggcctggtacc 18605527
Score = 81.8 bits (41), Expect = 8e-13
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 391 ttcctggagcagcagaacaagctgctggagaccaagtgggcgctgctgcaggagcag 447
||||||||||||||||||||| ||||||| ||||||||| | |||||||||||||||
Sbjct: 18202061 ttcctggagcagcagaacaaggtgctggacaccaagtggaccctgctgcaggagcag 18202117
Score = 81.8 bits (41), Expect = 8e-13
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgggcgctgctgcagg 442
||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||
Sbjct: 18284656 aggtgcggttcctggagcagcagaacaaggttctggagaccaagtggagcctcctgcagg 18284597
Query: 443 agcag 447
|||||
Sbjct: 18284596 agcag 18284592
Score = 79.8 bits (40), Expect = 3e-12
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 1124 ggagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagta 1183
||||||||||||||||||||| ||||||||||||||||||| | | | | |||||
Sbjct: 18033963 ggagctggaggccgccctgcagaaggccaagcaggacatggcctgcctggtcaaggagta 18034022
Query: 1184 ccaggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
|||||| | ||||| |||||||| ||||||||||||||||||||||||
Sbjct: 18034023 ccaggaggtgctgaactccaagctgggcctggacatcgagatcgccaccta 18034073
Score = 79.8 bits (40), Expect = 3e-12
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaag 426
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 18075432 aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 18075475
Score = 79.8 bits (40), Expect = 3e-12
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 1124 ggagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagta 1183
||||||||||||||||||||| ||||||||||||||||||| | | | | |||||
Sbjct: 18088193 ggagctggaggccgccctgcagaaggccaagcaggacatggcctgcctgatcaaggagta 18088134
Query: 1184 ccaggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
|||||| | ||||| |||||||| ||||||||||||||||||||||||
Sbjct: 18088133 ccaggaggtgctgaactccaagctgggcctggacatcgagatcgccaccta 18088083
Score = 79.8 bits (40), Expect = 3e-12
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaag 426
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 18108642 aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 18108685
Score = 79.8 bits (40), Expect = 3e-12
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 1124 ggagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagta 1183
||||||||||||||||||||| ||||||||||||||||||| | | | | |||||
Sbjct: 18112913 ggagctggaggccgccctgcagaaggccaagcaggacatggcctgcctgatcaaggagta 18112972
Query: 1184 ccaggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
|||||| | ||||| |||||||| ||||||||||||||||||||||||
Sbjct: 18112973 ccaggaggtgctgaactccaagctgggcctggacatcgagatcgccaccta 18113023
Score = 79.8 bits (40), Expect = 3e-12
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaag 426
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 18136239 aggtgcgcttcctggagcagcagaacaagctgctggagaccaag 18136196
Score = 77.8 bits (39), Expect = 1e-11
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgg 429
||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 18030977 aggtgcgcttccttgagcagcagaacaagctgctggagaccaagtgg 18031023
Score = 77.8 bits (39), Expect = 1e-11
Identities = 109/133 (81%)
Strand = Plus / Minus
Query: 1102 aggatgctcgcgccaagcangaggagctggaggccgccctgcancgggccaagcaggaca 1161
||||||| || ||||||| || || ||||||| ||||| || | ||||||| ||||
Sbjct: 18409859 aggatgcccgggccaagctggacgaactggagggtgccctacaccaggccaaggaggagc 18409800
Query: 1162 tggccaggcagctgcgcgagtaccaggacctcatgaacatcaagctggccctggacatcg 1221
||||| || |||||| ||||||||||| ||||||| | | ||||||||| ||||||| |
Sbjct: 18409799 tggcccggatgctgcgggagtaccaggagctcatgagcctgaagctggccttggacatgg 18409740
Query: 1222 agatcgccaccta 1234
|||||||||||||
Sbjct: 18409739 agatcgccaccta 18409727
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 329 aggagcgggagcagatcaagaccctcaacaacaagttcgcctcgttcatcgacaaggtg 387
|||||||||||||||||||| | || ||||||||||| ||||| |||||||||||||||
Sbjct: 18416097 aggagcgggagcagatcaaggcactgaacaacaagtttgcctccttcatcgacaaggtg 18416039
Score = 75.8 bits (38), Expect = 5e-11
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1173 ctgcgcgagtaccaggacctcatgaacatcaagctggccctggacatcgagatcgccacc 1232
||||| ||||||||||| ||| | ||| ||||| ||||||||||||||||||||||||||
Sbjct: 15694012 ctgcgagagtaccaggagctcctcaacgtcaagatggccctggacatcgagatcgccacc 15694071
Query: 1233 ta 1234
||
Sbjct: 15694072 ta 15694073
Score = 75.8 bits (38), Expect = 5e-11
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 1149 gccaagcaggacatggccaggcagctgcgcgagtaccaggacctcatgaacatcaagctg 1208
|||||||||||| |||| ||| |||||||||||||||||| || |||| | | ||||||
Sbjct: 18618931 gccaagcaggacctggcacggctgctgcgcgagtaccaggagctgatgagcttgaagctg 18618872
Query: 1209 gccctggacatcgagatcgccaccta 1234
|||||||| | ||||||||||||||
Sbjct: 18618871 gccctggatgtggagatcgccaccta 18618846
Score = 73.8 bits (37), Expect = 2e-10
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 1127 gctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtacca 1186
|||||||| |||||||| ||||||||||||||||||| | | ||| ||||||||
Sbjct: 18176764 gctggaggaggccctgcagaaggccaagcaggacatggcctgcctgctcaaggagtacca 18176823
Query: 1187 ggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||| | |||||| |||||||| ||||||||||||||||||||||||
Sbjct: 18176824 ggaggtgatgaactccaagctgggcctggacatcgagatcgccaccta 18176871
Score = 73.8 bits (37), Expect = 2e-10
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 1127 gctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtacca 1186
|||||||| |||||||| ||||||||||||||||||| | | ||| ||||||||
Sbjct: 18245092 gctggaggaggccctgcagaaggccaagcaggacatggcctgcctgctcaaggagtacca 18245033
Query: 1187 ggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||| | |||||| |||||||| ||||||||||||||||||||||||
Sbjct: 18245032 ggaggtgatgaactccaagctgggcctggacatcgagatcgccaccta 18244985
Score = 73.8 bits (37), Expect = 2e-10
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 311 tccagcaggtgcgccaggaggagcgggagcagatcaagaccctcaacaacaagttcgcct 370
||||| |||||||| | |||||||||||||||||||| | || ||||| |||||||| |
Sbjct: 18432639 tccagaaggtgcgcgcgcaggagcgggagcagatcaaggcgctgaacaataagttcgctt 18432580
Query: 371 cgttcatcgacaaggtg 387
| |||||||||||||||
Sbjct: 18432579 ccttcatcgacaaggtg 18432563
Score = 73.8 bits (37), Expect = 2e-10
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 784 gacacctccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatc 843
||||| ||||| |||||||||||||||||| || ||||||||||||| |||||||
Sbjct: 18446565 gacacatccgtcatcctctccatggacaacaatcggagcctggacctggacagcatcatt 18446506
Query: 844 gccgaggtcaaggcccaatacgaggagatcgcc 876
|| |||||| | ||||| |||||||||||||||
Sbjct: 18446505 gcggaggtccaagcccagtacgaggagatcgcc 18446473
Score = 73.8 bits (37), Expect = 2e-10
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgggcgctgctgcagg 442
|||||||||||||||||||||||||||| | ||||||||||||||| || |||||||
Sbjct: 18546947 aggtgcggttcctggagcagcagaacaaagtcctggagaccaagtggagcctcctgcagg 18546888
Query: 443 agcag 447
|||||
Sbjct: 18546887 agcag 18546883
Score = 71.9 bits (36), Expect = 8e-10
Identities = 92/111 (82%)
Strand = Plus / Plus
Query: 1124 ggagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagta 1183
||||||||||||||||||||| ||||||||||||||||||| | | | | |||||
Sbjct: 18078968 ggagctggaggccgccctgcagaaggccaagcaggacatggcctgcctgatcaaggagta 18079027
Query: 1184 ccaggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
|||||| | ||||| |||||||| |||||||||||||||||||||||
Sbjct: 18079028 ccaggaggtgctgaactccaagctgggtctggacatcgagatcgccaccta 18079078
Score = 71.9 bits (36), Expect = 8e-10
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 656 aggatgtggatatcgcctacatgaacaaggtggagttggaggccaaggtgga 707
|||| |||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 18154011 aggacgtggatgccgcctacatgagcaaggtggagttggaggccaaggtgga 18154062
Score = 71.9 bits (36), Expect = 8e-10
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 656 aggatgtggatatcgcctacatgaacaaggtggagttggaggccaaggtgga 707
|||| |||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 18266980 aggacgtggatgccgcctacatgagcaaggtggagttggaggccaaggtgga 18266929
Score = 71.9 bits (36), Expect = 8e-10
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 1113 gccaagcangaggagctggaggccgccctgcancgggccaagcaggacatggccaggcag 1172
||||||| || ||| |||||| ||||||| | | ||||||| |||| ||||| | |
Sbjct: 18385644 gccaagctggatgagttggagggcgccctgtaccaggccaaggaggagctggcccgaatg 18385585
Query: 1173 ctgcgcgagtaccaggacctcatgaacatcaagctggccctggacatcgagatcgccacc 1232
||||| ||||||||||| ||||||| || ||||||||||||||| | ||||||||||||
Sbjct: 18385584 ctgcgggagtaccaggagctcatgagcacaaagctggccctggacgtggagatcgccacc 18385525
Query: 1233 ta 1234
||
Sbjct: 18385524 ta 18385523
Score = 71.9 bits (36), Expect = 8e-10
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 797 tcctctccatggacaacagccgctccctggacctggacggcatcatcgccgaggtcaagg 856
|||||||||||||||||| |||| |||||||||| || ||||||||| ||| ||||| |
Sbjct: 18508825 tcctctccatggacaacaaccgccacctggacctgaacagcatcatcgacgaagtcaaag 18508766
Query: 857 cccaatacgaggagat 872
||||||| || |||||
Sbjct: 18508765 cccaatatgaagagat 18508750
Score = 71.9 bits (36), Expect = 8e-10
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 336 ggagcagatcaagaccctcaacaacaagttcgcctcgttcatcgacaaggtg 387
||||||||||||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 18670832 ggagcagatcaagactctcaacaataagtttgcctccttcatcgacaaggtg 18670781
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgg 429
||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 18053452 aggtgcgcttccttgagcagcagaataagctgctggagaccaagtgg 18053406
Score = 69.9 bits (35), Expect = 3e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgggcgctgctgcag 441
||||| |||||||||||||||||||| || | ||||||||||||||| ||||||||||
Sbjct: 18415422 aggtgaggttcctggagcagcagaaccaggtactggagaccaagtggcagctgctgcag 18415364
Score = 69.9 bits (35), Expect = 3e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 329 aggagcgggagcagatcaagaccctcaacaacaagttcgcctcgttcatcgacaaggtg 387
||||| |||||||||||||| | || ||||||||||| ||||| |||||||||||||||
Sbjct: 18450729 aggagtgggagcagatcaaggcactgaacaacaagtttgcctccttcatcgacaaggtg 18450671
Score = 69.9 bits (35), Expect = 3e-09
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 329 aggagcgggagcagatcaagaccctcaacaacaagttcgcctcgttcatcgacaaggtg 387
||||||||||||||||||| || ||||||||||| || |||| |||||||||||||||
Sbjct: 18484784 aggagcgggagcagatcaaaactctcaacaacaaatttgcctgcttcatcgacaaggtg 18484726
Score = 69.9 bits (35), Expect = 3e-09
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 1125 gagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtac 1184
|||||||||| |||||||| ||||||| ||||| ||||| | | |||||| || |||
Sbjct: 18507762 gagctggaggaggccctgcagaaggccaaggaggacctggcccgcctgctgcgtgactac 18507703
Query: 1185 caggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||||| || ||||||| ||| |||||||||||| | ||||| ||||||||
Sbjct: 18507702 caggaactgatgaacaccaaactggccctggacgtggagattgccaccta 18507653
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgg 429
||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 18573891 aggtgcggttcctggagcagcagaacaaggtcctagagaccaagtgg 18573845
Score = 67.9 bits (34), Expect = 1e-08
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 784 gacacctccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatc 843
||||| || |||||||| ||||||||||||| ||| ||||||||||||| ||||||||
Sbjct: 18587531 gacacgtctgtggtcctgtccatggacaacaaccgggacctggacctggacagcatcatc 18587472
Query: 844 gccgaggtcaaggcccaatacgaggagatc 873
|| |||||| ||||| || |||||||||
Sbjct: 18587471 gctgaggtccgcgcccagtatgaggagatc 18587442
Score = 65.9 bits (33), Expect = 5e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 394 ctggagcagcagaacaagctgctggagaccaag 426
|||||||||||||||||||||||||||||||||
Sbjct: 18145524 ctggagcagcagaacaagctgctggagaccaag 18145556
Score = 65.9 bits (33), Expect = 5e-08
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 656 aggatgtggatatcgcctacatgaacaaggtggagttggaggccaaggtggacgccctga 715
||||||||||| ||||||||||||||| ||||| ||||||||||||| || | ||||
Sbjct: 18282822 aggatgtggatgctgcctacatgaacaagatggagctggaggccaaggtcaactctctga 18282763
Query: 716 atgatgagatcagcttc 732
||||||||||| ||||
Sbjct: 18282762 ctgatgagatcaacttc 18282746
Score = 65.9 bits (33), Expect = 5e-08
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 656 aggatgtggatatcgcctacatgaacaaggtggagttggaggccaaggtggacgccctga 715
|||||||||| |||||||||||||||||||||| |||| |||||||| || || ||||
Sbjct: 18368423 aggatgtggacgccgcctacatgaacaaggtggagctggaagccaaggtcgatgcactga 18368482
Query: 716 atgatgagatcagcttc 732
|||||||||| ||||
Sbjct: 18368483 tggatgagatcaacttc 18368499
Score = 63.9 bits (32), Expect = 2e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaag 426
||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 18076021 aggtgcgcttcctggagcagcagacaaagctgctggagaccaag 18076064
Score = 63.9 bits (32), Expect = 2e-07
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 382 aaggtgcggttcctggagcagcagaacaagctgctggagaccaagtgggcgctgct 437
||||||||||||||||| ||||||||| || ||||| ||||||| |||| ||||||
Sbjct: 18483457 aaggtgcggttcctggaacagcagaaccaggtgctgaagaccaaatgggagctgct 18483402
Score = 61.9 bits (31), Expect = 8e-07
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgg 429
||||||||||||||||||||||||| ||| | |||||||| ||||||
Sbjct: 18091097 aggtgcggttcctggagcagcagaataaggtcctggagacaaagtgg 18091051
Score = 61.9 bits (31), Expect = 8e-07
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaa 425
|||| ||||||||||||||| |||||||||| |||||||||||
Sbjct: 18166581 aggtccggttcctggagcagaagaacaagctcctggagaccaa 18166623
Score = 61.9 bits (31), Expect = 8e-07
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaa 425
|||| ||||||||||||||| |||||||||| |||||||||||
Sbjct: 18255267 aggtccggttcctggagcagaagaacaagctcctggagaccaa 18255225
Score = 61.9 bits (31), Expect = 8e-07
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 383 aggtgcggttcctggagcagcagaacaagctgctggagaccaagtgg 429
||||||||||||||||||||||||| ||| | |||||||| ||||||
Sbjct: 18270422 aggtgcggttcctggagcagcagaataaggtcctggagacaaagtgg 18270376
Score = 61.9 bits (31), Expect = 8e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 329 aggagcgggagcagatcaagaccctcaacaacaagttcgcctcgttcatcgacaaggtg 387
|||||||||||||||||||| | || ||||||||||| ||||| || || |||||||||
Sbjct: 18397288 aggagcgggagcagatcaaggcactgaacaacaagtttgcctcctttattgacaaggtg 18397230
Score = 61.9 bits (31), Expect = 8e-07
Identities = 87/106 (82%)
Strand = Plus / Minus
Query: 1129 tggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtaccagg 1188
|||||| ||||||||| | |||||| ||||||||||| ||| ||||||||| |||||||
Sbjct: 18523797 tggaggacgccctgcagcaggccaaagaggacatggcccggctgctgcgcgactaccagg 18523738
Query: 1189 acctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
| || || | ||||||| || ||||| | ||||||||||||||
Sbjct: 18523737 agctgctgggaaccaagctgtccttggacgtggagatcgccaccta 18523692
Score = 61.9 bits (31), Expect = 8e-07
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 1137 gccctgcancgggccaagcaggacatggccaggcagctgcgcgagtaccaggacctcatg 1196
|||||||| | |||||| ||||| ||||| ||| |||| ||||||||||| | |||
Sbjct: 18542495 gccctgcagcaagccaaggaggacctggcccggctgctgaaggagtaccaggagttgatg 18542436
Query: 1197 aacatcaagctggccctggacatcgagatcgccaccta 1234
|| ||||||||||||||||| | ||||||||||||||
Sbjct: 18542435 aatgtcaagctggccctggacgttgagatcgccaccta 18542398
Score = 61.9 bits (31), Expect = 8e-07
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 790 tccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatcgccgag 849
||||| ||||| ||||||||||||| ||| ||||||||||||| |||||||||| |||
Sbjct: 18544554 tccgtagtcctgtccatggacaacaaccgggacctggacctggacagcatcatcgctgag 18544495
Query: 850 gtc 852
|||
Sbjct: 18544494 gtc 18544492
Score = 61.9 bits (31), Expect = 8e-07
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 1125 gagctggaggccgccctgcancgggccaagcaggacatggccaggcagctgcgcgagtac 1184
||||||||||| |||||| | ||||||| |||| ||||| || |||||| || |||
Sbjct: 18586379 gagctggaggctgccctgaagaaggccaaggaggagctggcccggatgctgcgtgaatac 18586320
Query: 1185 caggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||||| || |||| | | ||||||||| ||||||| ||||||||||||||
Sbjct: 18586319 caggagctgatgagcgtgaagctggccttggacattgagatcgccaccta 18586270
Score = 60.0 bits (30), Expect = 3e-06
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 787 acctccgtggtcctctccatggacaacagccgctccctggacctggacggcatcatcgcc 846
|||||||| |||| ||||||||||||| ||| ||||||||||||| ||||||| |||
Sbjct: 18413379 acctccgtcatcctgtccatggacaacaaccgggacctggacctggacagcatcattgcc 18413320
Query: 847 gaggtc 852
||||||
Sbjct: 18413319 gaggtc 18413314
>gb|GL894089.1| Sus scrofa unplaced genomic scaffold chrU_scaffold279
Length = 396
Score = 184 bits (93), Expect = 8e-44
Identities = 112/119 (94%)
Strand = Plus / Plus
Query: 1041 cagcgtgctaagttggaggccgccatcgccgaaactgaagaccgtggggagctggcccct 1100
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 278 cagcgtgctaagttggaggccgccatcgccgaagctgaggaccgtggggagctggccctc 337
Query: 1101 caggatgctcgcgccaagcangaggagctggaggccgccctgcancgggccaagcagga 1159
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 338 aaggatgctcgcgccaagcaggaggagctggaggccgccctgcagcgggccaagcagga 396
>gb|GL896273.1| Sus scrofa unplaced genomic scaffold chrU_scaffold63
Length = 124
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 752 aggagttgaaagagctgcagtccaaggtctcggacacctccgtggtcctctccatgg 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aggagttgaaagagctgcagtccaaggtctcggacacctccgtggtcctctccatgg 124
>gb|GL896284.1| Sus scrofa unplaced genomic scaffold chrU_scaffold64
Length = 124
Score = 105 bits (53), Expect = 6e-20
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 752 aggagttgaaagagctgcagtccaaggtctcggacacctccgtggtcctctccatgg 808
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 68 aggagttgaaagagctgcagtccaaggtctcagacacctccgtggtcctctccatgg 124
>Sscrofa_Chr10
|| Length = 79102373
Score = 65.9 bits (33), Expect = 5e-08
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 375 catcgacaaggtgcggttcctggagcagcagaacaag 411
||||||||||||||| |||||||||||||||||||||
Sbjct: 48227499 catcgacaaggtgcgcttcctggagcagcagaacaag 48227535
>Sscrofa_Chr12
|| Length = 63588571
Score = 63.9 bits (32), Expect = 2e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 1179 gagtaccaggacctcatgaacatcaagctggccctggacatcgagatcgccaccta 1234
||||||||||| || | ||| | ||||||||||||||||||||||||||||||||
Sbjct: 18705894 gagtaccaggagctgctcaacgttaagctggccctggacatcgagatcgccaccta 18705949
>Sscrofa_Chr04
|| Length = 143465943
Score = 60.0 bits (30), Expect = 3e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 1169 gcagctgcgcgagtaccaggacctcatgaacatcaagctggccctggacatcgagatc 1226
||||||| |||||||||||| || || |||||||||||||||||||||| ||||||
Sbjct: 102645429 gcagctggacgagtaccaggagctgctggacatcaagctggccctggacatggagatc 102645372
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,308,634
Number of extensions: 261
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 91
Length of query: 1234
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1213
Effective length of database: 2,808,413,156
Effective search space: 3406605158228
Effective search space used: 3406605158228
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)