Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013221
(1151 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536134.2| PREDICTED: similar to nitrilase 1 [Canis famili... 613 e-175
Alignment gi|XP_535718.2| PREDICTED: similar to nitrilase family, member ... 187 2e-47
Alignment gi|XP_543524.2| PREDICTED: similar to Beta-ureidopropionase (Be... 67 3e-11
>ref|XP_536134.2| PREDICTED: similar to nitrilase 1 [Canis familiaris].
Length = 334
Score = 613 bits (1580), Expect = e-175
Identities = 297/331 (89%), Positives = 302/331 (91%)
Frame = +1
Query: 100 RPPRLGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTS 279
R RLGFIIRPPHQ CAQP PR+MAISSSSW+LPLVAVCQVTS
Sbjct: 4 RAGRLGFIIRPPHQLLPLLLCPGLRIPRLSVLCAQPSPRAMAISSSSWELPLVAVCQVTS 63
Query: 280 TPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQL 459
TPDKQ+NFKTCAELVREAARLGACLAFLPEAFDFI RDP ETLRLSEPLGG LLGEYTQL
Sbjct: 64 TPDKQENFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLRLSEPLGGNLLGEYTQL 123
Query: 460 ARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMC 639
ARECGLWLSLGGFHERGQDWEQTQKIYNCHV+LNN GSVVATYRKTHLCDVEIPGQGPM
Sbjct: 124 ARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNNEGSVVATYRKTHLCDVEIPGQGPMR 183
Query: 640 ESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPA 819
ESNSTIPGPSLE PVSTPAGKIGLAICYDMRFPELSLAL QAGAEILTYPSAFGSVTGPA
Sbjct: 184 ESNSTIPGPSLESPVSTPAGKIGLAICYDMRFPELSLALAQAGAEILTYPSAFGSVTGPA 243
Query: 820 HWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLGRI 999
HWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCL RI
Sbjct: 244 HWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARI 303
Query: 1000 DLNYLRQLRQHLPVFQHRRPDLYGSLGHPLS 1092
DLNYLRQLRQHLPVFQHRRPDLYG+LGHPLS
Sbjct: 304 DLNYLRQLRQHLPVFQHRRPDLYGNLGHPLS 334
>ref|XP_535718.2| PREDICTED: similar to nitrilase family, member 2 [Canis familiaris].
Length = 323
Score = 187 bits (475), Expect = 2e-47
Identities = 115/292 (39%), Positives = 158/292 (54%), Gaps = 4/292 (1%)
Frame = +1
Query: 205 PRPRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFI 384
P+P S+A ++ L L+ + QV+S K +N LVREAAR GA + LPE F+
Sbjct: 42 PQPVSLA---GAFRLALIQL-QVSSI--KSENLARACGLVREAARQGAKVVSLPECFN-- 93
Query: 385 GRDPEETLRLSEPLGGKLLGEYTQ----LARECGLWLSLGGFHERGQDWEQTQKIYNCHV 552
P T E K+ GE TQ +A+EC ++L G E E K+YN
Sbjct: 94 --SPYGTKYFPE-YAEKIPGESTQKLSEVAKECSVYLIGGSIPE-----EDAGKLYNTCA 145
Query: 553 ILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMR 732
+ G+++ YRK HL D++IPG+ ES + PG S TP ++GL ICYDMR
Sbjct: 146 VFGPDGTLLVKYRKLHLFDIDIPGKITFHESKTLTPGDSFST-FDTPYCRVGLGICYDMR 204
Query: 733 FPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRA 912
F EL+ Q G ++L YP+AF TGPAHWE+L R RA++ Q YV A+
Sbjct: 205 FAELAQIYAQRGCQLLVYPAAFNMTTGPAHWELLQRGRAVDNQLYVATASPARDEQASYV 264
Query: 913 SYGHSMVVDPWGTVVARCSEGPGLCLGRIDLNYLRQLRQHLPVFQHRRPDLY 1068
++GHS VV PWG VVA+ + IDL L ++RQ +P+F +R DLY
Sbjct: 265 AWGHSTVVSPWGEVVAKAGAEETVVYSDIDLKKLAEIRQQIPIFSQKRSDLY 316
>ref|XP_543524.2| PREDICTED: similar to Beta-ureidopropionase (Beta-alanine synthase)
(N-carbamoyl-beta-alanine amidohydrolase) (BUP-1) [Canis
familiaris].
Length = 384
Score = 67.0 bits (162), Expect = 3e-11
Identities = 57/187 (30%), Positives = 78/187 (41%), Gaps = 16/187 (8%)
Frame = +1
Query: 511 QDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVST 690
+D E ++N V+++N+G+V+ RK H IP G ES + G P T
Sbjct: 169 RDREHGDILWNTAVVISNSGAVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQT 223
Query: 691 PAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYV 870
GKI + ICY P L GAEI+ PSA + W V R AI C+
Sbjct: 224 QFGKIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPVEARNAAIANHCFT 283
Query: 871 VAAAQCGRHH---------EKRAS------YGHSMVVDPWGTVVARCSEG-PGLCLGRID 1002
A + G+ H K+A YG S V P + S GL + +D
Sbjct: 284 CAINRVGQEHFPNEFTSGDGKKAHRDFGYFYGSSYVAAPDSSRTPGLSRNKDGLLVAELD 343
Query: 1003 LNYLRQL 1023
LN RQ+
Sbjct: 344 LNLCRQV 350
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,818,464
Number of extensions: 1542999
Number of successful extensions: 5829
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5811
Number of HSP's successfully gapped: 3
Length of query: 383
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 278
Effective length of database: 15,374,224
Effective search space: 4274034272
Effective search space used: 4274034272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013221
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013221
(1151 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033112.1| nitrilase homolog 1 [Bos taurus]. 586 e-167
Alignment gi|NP_001033222.1| omega-amidase NIT2 [Bos taurus]. 175 8e-44
Alignment gi|NP_001094520.1| beta-ureidopropionase [Bos taurus]. 67 4e-11
>ref|NP_001033112.1| nitrilase homolog 1 [Bos taurus].
Length = 328
Score = 586 bits (1510), Expect = e-167
Identities = 285/327 (87%), Positives = 294/327 (89%)
Frame = +1
Query: 112 LGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDK 291
LGFIIRPPHQ CA PR R+MA SSS +LPLVAVCQVTSTPDK
Sbjct: 2 LGFIIRPPHQLLSLLSCPGLRIPRFSVLCAPPRLRTMAASSSFSELPLVAVCQVTSTPDK 61
Query: 292 QQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLAREC 471
+QNFKTCAEL+REAARLGACLAFLPEAFDFI RDPEET RLSEPL G LL EYTQLAREC
Sbjct: 62 EQNFKTCAELIREAARLGACLAFLPEAFDFIARDPEETRRLSEPLSGNLLEEYTQLAREC 121
Query: 472 GLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNS 651
GLWLSLGGFHERGQDWEQTQKIYNCHVI+NN GSVVATYRKTHLCDVEIPGQGPM ESNS
Sbjct: 122 GLWLSLGGFHERGQDWEQTQKIYNCHVIMNNMGSVVATYRKTHLCDVEIPGQGPMRESNS 181
Query: 652 TIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEV 831
TIPGPSLE P+STPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEV
Sbjct: 182 TIPGPSLESPISTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEV 241
Query: 832 LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLGRIDLNY 1011
LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCL RIDLNY
Sbjct: 242 LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLNY 301
Query: 1012 LRQLRQHLPVFQHRRPDLYGSLGHPLS 1092
L+QLR+ LPVFQHRRPDLYG+LGHPLS
Sbjct: 302 LQQLRKQLPVFQHRRPDLYGNLGHPLS 328
>ref|NP_001033222.1| omega-amidase NIT2 [Bos taurus].
Length = 276
Score = 175 bits (443), Expect = 8e-44
Identities = 95/274 (34%), Positives = 148/274 (54%), Gaps = 3/274 (1%)
Frame = +1
Query: 256 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRL---SEPL 426
+A+ Q+ + K +N L+REA++ GA + LPE F+ P T +E +
Sbjct: 6 LALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFN----SPYGTKYFPDYAEKI 61
Query: 427 GGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLC 606
G + +++A+EC +++ G E+ K+YN + G+++ +RK HL
Sbjct: 62 PGDSTQKLSEVAKECSMYVIGGSIPEK-----DAGKLYNTCAVFGPDGTLLVKHRKLHLF 116
Query: 607 DVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTY 786
D+++PG+ ES + PG S TP ++GL ICYD+RF EL+ Q G ++L Y
Sbjct: 117 DIDVPGKITFQESETLSPGDSFSL-FDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVY 175
Query: 787 PSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARC 966
P AF TGPAHWE+L R RA++ Q YV A+ ++GHS VV+PWG V+A+
Sbjct: 176 PGAFNLTTGPAHWELLQRGRAVDNQVYVATASPARDEKASYVAWGHSTVVNPWGEVLAKA 235
Query: 967 SEGPGLCLGRIDLNYLRQLRQHLPVFQHRRPDLY 1068
+ IDL L ++RQ +P+F +R DLY
Sbjct: 236 GTEETIVYADIDLKKLAEIRQQIPIFSQKRSDLY 269
>ref|NP_001094520.1| beta-ureidopropionase [Bos taurus].
Length = 384
Score = 66.6 bits (161), Expect = 4e-11
Identities = 83/299 (27%), Positives = 120/299 (40%), Gaps = 25/299 (8%)
Frame = +1
Query: 202 QPRPRSMAISSSSWDLPLVA----VCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPE 369
Q RPR++ + PL A V QVT+ + + +V AA G + E
Sbjct: 66 QRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRME------AVVEVAAMCGVNIICFQE 119
Query: 370 A----FDFIGRDPEETLRLSEPL-GGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQK 534
A F F R+ +E G + +LAR+ G+ + + ER D
Sbjct: 120 AWTMPFAFCTREKLPWTEFAESAEDGPTIKFCQELARKHGM-VVVSPVLERDSDHGDV-- 176
Query: 535 IYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLA 714
++N V++ ++G+V+ RK H IP G ES + G P T G+I +
Sbjct: 177 LWNTAVVVASSGAVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVN 231
Query: 715 ICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGR 894
ICY P L GAEI+ PSA + W + R AI C+ A + GR
Sbjct: 232 ICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGR 291
Query: 895 HH---------EKRAS------YGHSMVVDPWGTVVARCSE-GPGLCLGRIDLNYLRQL 1023
H K+A YG S V P G+ S GL + +DLN RQ+
Sbjct: 292 EHFPNEFTSGDGKKAHRDFGYFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQV 350
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,911,335
Number of extensions: 1510827
Number of successful extensions: 5727
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5713
Number of HSP's successfully gapped: 3
Length of query: 383
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 279
Effective length of database: 14,240,222
Effective search space: 3973021938
Effective search space used: 3973021938
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013221
(1151 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927783.3| PREDICTED: nitrilase homolog 1 isoform 2 [Su... 636 0.0
Alignment gi|XP_003132757.2| PREDICTED: omega-amidase NIT2-like [Sus scro... 121 6e-28
Alignment gi|XP_001929289.1| PREDICTED: beta-ureidopropionase [Sus scrofa]. 69 5e-12
Alignment gi|XP_003358888.1| PREDICTED: omega-amidase NIT2-like [Sus scro... 62 8e-10
>ref|XP_001927783.3| PREDICTED: nitrilase homolog 1 isoform 2 [Sus scrofa].
Length = 328
Score = 636 bits (1641), Expect = 0.0
Identities = 308/327 (94%), Positives = 308/327 (94%)
Frame = +1
Query: 112 LGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDK 291
LGFIIRPPHQ CAQPRPRSMAISSSSWDLPLVAVCQVTSTPDK
Sbjct: 2 LGFIIRPPHQLLSLLLGPRLRILRLSILCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDK 61
Query: 292 QQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLAREC 471
QQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLAREC
Sbjct: 62 QQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLAREC 121
Query: 472 GLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNS 651
GLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNS
Sbjct: 122 GLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNS 181
Query: 652 TIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEV 831
TIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEV
Sbjct: 182 TIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEV 241
Query: 832 LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLGRIDLNY 1011
LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCL RIDLNY
Sbjct: 242 LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLNY 301
Query: 1012 LRQLRQHLPVFQHRRPDLYGSLGHPLS 1092
LRQLRQHLPVFQHRRPDLYGSLGHPLS
Sbjct: 302 LRQLRQHLPVFQHRRPDLYGSLGHPLS 328
>ref|XP_003132757.2| PREDICTED: omega-amidase NIT2-like [Sus scrofa].
Length = 230
Score = 121 bits (304), Expect = 6e-28
Identities = 70/198 (35%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Frame = +1
Query: 256 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETL---RLSEPL 426
+A+ Q+ + K N ++EAA+ GA + LPE F+ P T +E +
Sbjct: 13 LALIQLHVSSVKSDNLTRACGFIQEAAKQGAKIISLPECFN----SPYGTKYFPEYAEKI 68
Query: 427 GGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLC 606
G + +++A+ECG+++ G E E K+YN + G+++A YRK HL
Sbjct: 69 PGDSTQKLSEVAKECGVYVIGGSIPE-----EDAGKLYNTCAVFGPDGTLLAKYRKLHLF 123
Query: 607 DVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTY 786
D+++PG+ ES + PG S TP ++GL ICYD+RF EL+ Q G ++L Y
Sbjct: 124 DIDVPGKITFQESKTLSPGDSFST-FDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVY 182
Query: 787 PSAFGSVTGPAHWEVLLR 840
P AF TGPAHWE+L R
Sbjct: 183 PGAFNLTTGPAHWELLQR 200
>ref|XP_001929289.1| PREDICTED: beta-ureidopropionase [Sus scrofa].
Length = 384
Score = 68.9 bits (167), Expect = 5e-12
Identities = 82/298 (27%), Positives = 116/298 (38%), Gaps = 25/298 (8%)
Frame = +1
Query: 202 QPRPRSMAISSSSWDLPLVA----VCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPE 369
Q RPR++ + PL A V QVT+ + A + AA G + E
Sbjct: 66 QRRPRTVRVGLVQNRTPLPADTPVVKQVTAL------HRRIAAIAEVAAMCGVNIICFQE 119
Query: 370 A----FDFIGRDPEETLRLSEPLGGKLLGEYTQ-LARECGLWLSLGGFHERGQDWEQTQK 534
A F F R+ +E + Q L+R+ G+ + + ER D E
Sbjct: 120 AWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGM-VVVSPILER--DVEHGDV 176
Query: 535 IYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLA 714
++N V+++N+G V+ RK H IP G ES + G P TP G+I +
Sbjct: 177 LWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVN 231
Query: 715 ICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGR 894
ICY P L GAEI+ PSA V + W + R AI C+ A + G
Sbjct: 232 ICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGE 291
Query: 895 ---------------HHEKRASYGHSMVVDPWGTVVARCSEG-PGLCLGRIDLNYLRQ 1020
H + YG S V P G+ GL + +DLN RQ
Sbjct: 292 ERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELDLNLCRQ 349
>ref|XP_003358888.1| PREDICTED: omega-amidase NIT2-like [Sus scrofa].
Length = 99
Score = 61.6 bits (148), Expect = 8e-10
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +1
Query: 829 VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLGRIDLN 1008
++ RA++ Q YV A+ ++GHS +V PWG V+A+ + IDL
Sbjct: 13 LVFEKRAVDNQVYVATASPARDDKASYVAWGHSTIVSPWGEVLAKAGTEEKIVYADIDLK 72
Query: 1009 YLRQLRQHLPVFQHRRPDLY 1068
L ++RQ +P+F +R DLY
Sbjct: 73 KLAEIRQQIPIFSQKRSDLY 92
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,213,104
Number of extensions: 975091
Number of successful extensions: 3685
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3671
Number of HSP's successfully gapped: 4
Length of query: 383
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 282
Effective length of database: 8,829,335
Effective search space: 2489872470
Effective search space used: 2489872470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013221
(1151 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036179.1| nitrilase homolog 1 isoform 1 [Mus musculus]. 557 e-159
Alignment gi|NP_001229509.1| nitrilase homolog 1 isoform 2 [Mus musculus]. 536 e-152
Alignment gi|NP_075664.1| omega-amidase NIT2 [Mus musculus]. 179 3e-45
Alignment gi|NP_598756.1| beta-ureidopropionase [Mus musculus]. 65 1e-10
>ref|NP_036179.1| nitrilase homolog 1 isoform 1 [Mus musculus].
Length = 323
Score = 557 bits (1436), Expect = e-159
Identities = 268/327 (81%), Positives = 290/327 (88%)
Frame = +1
Query: 112 LGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDK 291
LGFI RPPHQ C QPRPR+M+ SS+SW+LPLVAVCQVTSTP+K
Sbjct: 2 LGFITRPPHQLLCTGYRLLRTPVL----CTQPRPRTMS-SSTSWELPLVAVCQVTSTPNK 56
Query: 292 QQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLAREC 471
Q+NFKTCAELV+EAARLGACLAFLPEAFDFI R+P ETL LSEPL G LLG+Y+QLAREC
Sbjct: 57 QENFKTCAELVQEAARLGACLAFLPEAFDFIARNPAETLLLSEPLNGDLLGQYSQLAREC 116
Query: 472 GLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNS 651
G+WLSLGGFHERGQDWEQ QKIYNCHV+LN+ GSVVA+YRKTHLCDVEIPGQGPM ESN
Sbjct: 117 GIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRESNY 176
Query: 652 TIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEV 831
T PG +LEPPV TPAGK+GLAICYDMRFPELSL L QAGAEILTYPSAFGSVTGPAHWEV
Sbjct: 177 TKPGGTLEPPVKTPAGKVGLAICYDMRFPELSLKLAQAGAEILTYPSAFGSVTGPAHWEV 236
Query: 832 LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLGRIDLNY 1011
LLRARAIE+QCYV+AAAQCGRHHE RASYGHSMVVDPWGTVVARCSEGPGLCL RIDL++
Sbjct: 237 LLRARAIESQCYVIAAAQCGRHHETRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLHF 296
Query: 1012 LRQLRQHLPVFQHRRPDLYGSLGHPLS 1092
L+Q+RQHLPVFQHRRPDLYGSLGHPLS
Sbjct: 297 LQQMRQHLPVFQHRRPDLYGSLGHPLS 323
>ref|NP_001229509.1| nitrilase homolog 1 isoform 2 [Mus musculus].
Length = 290
Score = 536 bits (1381), Expect = e-152
Identities = 252/288 (87%), Positives = 272/288 (94%)
Frame = +1
Query: 229 SSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETL 408
SS+SW+LPLVAVCQVTSTP+KQ+NFKTCAELV+EAARLGACLAFLPEAFDFI R+P ETL
Sbjct: 3 SSTSWELPLVAVCQVTSTPNKQENFKTCAELVQEAARLGACLAFLPEAFDFIARNPAETL 62
Query: 409 RLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATY 588
LSEPL G LLG+Y+QLARECG+WLSLGGFHERGQDWEQ QKIYNCHV+LN+ GSVVA+Y
Sbjct: 63 LLSEPLNGDLLGQYSQLARECGIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASY 122
Query: 589 RKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAG 768
RKTHLCDVEIPGQGPM ESN T PG +LEPPV TPAGK+GLAICYDMRFPELSL L QAG
Sbjct: 123 RKTHLCDVEIPGQGPMRESNYTKPGGTLEPPVKTPAGKVGLAICYDMRFPELSLKLAQAG 182
Query: 769 AEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWG 948
AEILTYPSAFGSVTGPAHWEVLLRARAIE+QCYV+AAAQCGRHHE RASYGHSMVVDPWG
Sbjct: 183 AEILTYPSAFGSVTGPAHWEVLLRARAIESQCYVIAAAQCGRHHETRASYGHSMVVDPWG 242
Query: 949 TVVARCSEGPGLCLGRIDLNYLRQLRQHLPVFQHRRPDLYGSLGHPLS 1092
TVVARCSEGPGLCL RIDL++L+Q+RQHLPVFQHRRPDLYGSLGHPLS
Sbjct: 243 TVVARCSEGPGLCLARIDLHFLQQMRQHLPVFQHRRPDLYGSLGHPLS 290
>ref|NP_075664.1| omega-amidase NIT2 [Mus musculus].
Length = 276
Score = 179 bits (455), Expect = 3e-45
Identities = 101/274 (36%), Positives = 147/274 (53%), Gaps = 3/274 (1%)
Frame = +1
Query: 256 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRL---SEPL 426
+A+ Q+ + K N LVREAA+ GA + LPE F+ P T +E +
Sbjct: 6 LALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFN----SPYGTTYFPDYAEKI 61
Query: 427 GGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLC 606
G+ + +++A+E ++L G E E K+YN + GS++ +RK HL
Sbjct: 62 PGESTQKLSEVAKESSIYLIGGSIPE-----EDAGKLYNTCSVFGPDGSLLVKHRKIHLF 116
Query: 607 DVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTY 786
D+++PG+ ES + PG S TP K+GL ICYDMRF EL+ Q G ++L Y
Sbjct: 117 DIDVPGKITFQESKTLSPGDSFST-FDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVY 175
Query: 787 PSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARC 966
P AF TGPAHWE+L RARA++ Q YV A+ ++GHS VVDPWG V+ +
Sbjct: 176 PGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKA 235
Query: 967 SEGPGLCLGRIDLNYLRQLRQHLPVFQHRRPDLY 1068
+ IDL L ++RQ +P+ + +R DLY
Sbjct: 236 GTEETILYSDIDLKKLAEIRQQIPILKQKRADLY 269
>ref|NP_598756.1| beta-ureidopropionase [Mus musculus].
Length = 393
Score = 65.1 bits (157), Expect = 1e-10
Identities = 74/288 (25%), Positives = 109/288 (37%), Gaps = 23/288 (7%)
Frame = +1
Query: 274 TSTPDKQQN---FKTCAELVREAARLGACLAFLPEA----FDFIGRDPEETLRLSEPLGG 432
TS P +Q K+ E+ AA G + EA F F R+ +E
Sbjct: 85 TSAPVAEQVSALHKSIEEIAEVAAMCGVNIICFQEAWNMPFAFCTREKLPWTEFAESAED 144
Query: 433 KLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDV 612
L + Q + + + ER D E ++N V+++N+G V+ RK H
Sbjct: 145 GLTTRFCQKLAKKHNMVVVSPILER--DREHGGVLWNTAVVISNSGLVMGKTRKNH---- 198
Query: 613 EIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPS 792
IP G ES + G P T G+I + ICY P L GAEI+ PS
Sbjct: 199 -IPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPS 257
Query: 793 AFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGR---------------HHEKRASYGHS 927
A + W + R AI C+ A + G+ HH+ YG S
Sbjct: 258 ATIGELSESLWPIEARNAAIANHCFTCALNRVGQEHFPNEFTSGDGKKAHHDLGYFYGSS 317
Query: 928 MVVDPWGTVVARCSEG-PGLCLGRIDLNYLRQLRQHLPVFQHRRPDLY 1068
V P G+ S GL + ++LN +Q+ R ++Y
Sbjct: 318 YVAAPDGSRTPGLSRNQDGLLVTELNLNLCQQINDFWTFKMTGRLEMY 365
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,957,937
Number of extensions: 1263877
Number of successful extensions: 4687
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4661
Number of HSP's successfully gapped: 4
Length of query: 383
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 280
Effective length of database: 12,523,851
Effective search space: 3506678280
Effective search space used: 3506678280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013221
(1151 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005591.1| nitrilase homolog 1 isoform 1 [Homo sapiens]. 596 e-170
Alignment gi|NP_001172022.1| nitrilase homolog 1 isoform 3 [Homo sapiens]. 577 e-165
Alignment gi|NP_001172023.1| nitrilase homolog 1 isoform 4 [Homo sapiens]. 572 e-163
Alignment gi|NP_001172021.1| nitrilase homolog 1 isoform 2 [Homo sapiens]. 417 e-116
Alignment gi|NP_064587.1| omega-amidase NIT2 [Homo sapiens]. 182 4e-46
Alignment gi|NP_057411.1| beta-ureidopropionase [Homo sapiens]. 64 2e-10
>ref|NP_005591.1| nitrilase homolog 1 isoform 1 [Homo sapiens].
Length = 327
Score = 596 bits (1536), Expect = e-170
Identities = 288/327 (88%), Positives = 299/327 (91%)
Frame = +1
Query: 112 LGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDK 291
LGFI RPPH+ CAQPRPR+MAISSSS +LPLVAVCQVTSTPDK
Sbjct: 2 LGFITRPPHRFLSLLCPGLRIPQLSVL-CAQPRPRAMAISSSSCELPLVAVCQVTSTPDK 60
Query: 292 QQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLAREC 471
QQNFKTCAELVREAARLGACLAFLPEAFDFI RDP ETL LSEPLGGKLL EYTQLAREC
Sbjct: 61 QQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGKLLEEYTQLAREC 120
Query: 472 GLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNS 651
GLWLSLGGFHERGQDWEQTQKIYNCHV+LN+ G+VVATYRKTHLCDVEIPGQGPMCESNS
Sbjct: 121 GLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNS 180
Query: 652 TIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEV 831
T+PGPSLE PVSTPAGKIGLA+CYDMRFPELSLAL QAGAEILTYPSAFGS+TGPAHWEV
Sbjct: 181 TMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALAQAGAEILTYPSAFGSITGPAHWEV 240
Query: 832 LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLGRIDLNY 1011
LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCL RIDLNY
Sbjct: 241 LLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARIDLNY 300
Query: 1012 LRQLRQHLPVFQHRRPDLYGSLGHPLS 1092
LRQLR+HLPVFQHRRPDLYG+LGHPLS
Sbjct: 301 LRQLRRHLPVFQHRRPDLYGNLGHPLS 327
>ref|NP_001172022.1| nitrilase homolog 1 isoform 3 [Homo sapiens].
Length = 312
Score = 577 bits (1488), Expect = e-165
Identities = 275/294 (93%), Positives = 285/294 (96%)
Frame = +1
Query: 211 PRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGR 390
PR+MAISSSS +LPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFI R
Sbjct: 19 PRAMAISSSSCELPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIAR 78
Query: 391 DPEETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTG 570
DP ETL LSEPLGGKLL EYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHV+LN+ G
Sbjct: 79 DPAETLHLSEPLGGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKG 138
Query: 571 SVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSL 750
+VVATYRKTHLCDVEIPGQGPMCESNST+PGPSLE PVSTPAGKIGLA+CYDMRFPELSL
Sbjct: 139 AVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPELSL 198
Query: 751 ALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSM 930
AL QAGAEILTYPSAFGS+TGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSM
Sbjct: 199 ALAQAGAEILTYPSAFGSITGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSM 258
Query: 931 VVDPWGTVVARCSEGPGLCLGRIDLNYLRQLRQHLPVFQHRRPDLYGSLGHPLS 1092
VVDPWGTVVARCSEGPGLCL RIDLNYLRQLR+HLPVFQHRRPDLYG+LGHPLS
Sbjct: 259 VVDPWGTVVARCSEGPGLCLARIDLNYLRQLRRHLPVFQHRRPDLYGNLGHPLS 312
>ref|NP_001172023.1| nitrilase homolog 1 isoform 4 [Homo sapiens].
Length = 291
Score = 572 bits (1475), Expect = e-163
Identities = 273/291 (93%), Positives = 282/291 (96%)
Frame = +1
Query: 220 MAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPE 399
MAISSSS +LPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFI RDP
Sbjct: 1 MAISSSSCELPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPA 60
Query: 400 ETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVV 579
ETL LSEPLGGKLL EYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHV+LN+ G+VV
Sbjct: 61 ETLHLSEPLGGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVV 120
Query: 580 ATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALV 759
ATYRKTHLCDVEIPGQGPMCESNST+PGPSLE PVSTPAGKIGLA+CYDMRFPELSLAL
Sbjct: 121 ATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALA 180
Query: 760 QAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVD 939
QAGAEILTYPSAFGS+TGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVD
Sbjct: 181 QAGAEILTYPSAFGSITGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVD 240
Query: 940 PWGTVVARCSEGPGLCLGRIDLNYLRQLRQHLPVFQHRRPDLYGSLGHPLS 1092
PWGTVVARCSEGPGLCL RIDLNYLRQLR+HLPVFQHRRPDLYG+LGHPLS
Sbjct: 241 PWGTVVARCSEGPGLCLARIDLNYLRQLRRHLPVFQHRRPDLYGNLGHPLS 291
>ref|NP_001172021.1| nitrilase homolog 1 isoform 2 [Homo sapiens].
Length = 243
Score = 417 bits (1071), Expect = e-116
Identities = 203/239 (84%), Positives = 212/239 (88%)
Frame = +1
Query: 112 LGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPDK 291
LGFI RPPH+ CAQPRPR+MAISSSS +LPLVAVCQVTSTPDK
Sbjct: 2 LGFITRPPHRFLSLLCPGLRIPQLSVL-CAQPRPRAMAISSSSCELPLVAVCQVTSTPDK 60
Query: 292 QQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLAREC 471
QQNFKTCAELVREAARLGACLAFLPEAFDFI RDP ETL LSEPLGGKLL EYTQLAREC
Sbjct: 61 QQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGKLLEEYTQLAREC 120
Query: 472 GLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNS 651
GLWLSLGGFHERGQDWEQTQKIYNCHV+LN+ G+VVATYRKTHLCDVEIPGQGPMCESNS
Sbjct: 121 GLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESNS 180
Query: 652 TIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE 828
T+PGPSLE PVSTPAGKIGLA+CYDMRFPELSLAL QAGAEILTYPSAFGS+TGPAHWE
Sbjct: 181 TMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALAQAGAEILTYPSAFGSITGPAHWE 239
>ref|NP_064587.1| omega-amidase NIT2 [Homo sapiens].
Length = 276
Score = 182 bits (463), Expect = 4e-46
Identities = 99/271 (36%), Positives = 148/271 (54%)
Frame = +1
Query: 256 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGK 435
+A+ Q+ + K N +REAA GA + LPE F+ + +E + G+
Sbjct: 6 LALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNS-PYGAKYFPEYAEKIPGE 64
Query: 436 LLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVE 615
+ +++A+EC ++L G E E K+YN + G+++A YRK HL D++
Sbjct: 65 STQKLSEVAKECSIYLIGGSIPE-----EDAGKLYNTCAVFGPDGTLLAKYRKIHLFDID 119
Query: 616 IPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSA 795
+PG+ ES + PG S TP ++GL ICYDMRF EL+ Q G ++L YP A
Sbjct: 120 VPGKITFQESKTLSPGDSFST-FDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGA 178
Query: 796 FGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEG 975
F TGPAHWE+L R+RA++ Q YV A+ ++GHS VV+PWG V+A+
Sbjct: 179 FNLTTGPAHWELLQRSRAVDNQVYVATASPARDDKASYVAWGHSTVVNPWGEVLAKAGTE 238
Query: 976 PGLCLGRIDLNYLRQLRQHLPVFQHRRPDLY 1068
+ IDL L ++RQ +PVF+ +R DLY
Sbjct: 239 EAIVYSDIDLKKLAEIRQQIPVFRQKRSDLY 269
>ref|NP_057411.1| beta-ureidopropionase [Homo sapiens].
Length = 384
Score = 64.3 bits (155), Expect = 2e-10
Identities = 54/187 (28%), Positives = 78/187 (41%), Gaps = 16/187 (8%)
Frame = +1
Query: 511 QDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVST 690
+D E ++N V+++N+G+V+ RK H IP G ES + G P T
Sbjct: 169 RDSEHGDVLWNTAVVISNSGAVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQT 223
Query: 691 PAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYV 870
G+I + ICY P L GAEI+ PSA + W + R AI C+
Sbjct: 224 QFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFT 283
Query: 871 VAAAQCGRHH---------EKRAS------YGHSMVVDPWGTVVARCSEG-PGLCLGRID 1002
A + G H K+A YG S V P + S GL + ++D
Sbjct: 284 CAINRVGTEHFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDSSRTPGLSRSRDGLLVAKLD 343
Query: 1003 LNYLRQL 1023
LN +Q+
Sbjct: 344 LNLCQQV 350
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,872,073
Number of extensions: 1522603
Number of successful extensions: 5835
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5814
Number of HSP's successfully gapped: 6
Length of query: 383
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 279
Effective length of database: 14,868,908
Effective search space: 4148425332
Effective search space used: 4148425332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013221
(1151 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 636 e-180
>Sscrofa_Chr04
|| Length = 143465943
Score = 636 bits (321), Expect = e-180
Identities = 324/325 (99%)
Strand = Plus / Minus
Query: 827 aggtgttgctgcgggcccgagccattgaaactcagtgctatgtagtggcggcagcacagt 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181078 aggtgttgctgcgggcccgagccattgaaactcagtgctatgtagtggcggcagcacagt 97181019
Query: 887 gtggacgccaccatgagaagagagcaagttatggccatagcatggtggtagatccctggg 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181018 gtggacgccaccatgagaagagagcaagttatggccatagcatggtggtagatccctggg 97180959
Query: 947 gaacggtggtggcccgctgctctgaaggaccaggcctctgccttggccgaattgacctca 1006
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 97180958 gaacggtggtggcccgctgctctgaaggaccaggcctctgccttgcccgaattgacctca 97180899
Query: 1007 attatctgcgacagttgcgccaacacctgcctgtgttccagcaccgcaggcctgatctct 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97180898 attatctgcgacagttgcgccaacacctgcctgtgttccagcaccgcaggcctgatctct 97180839
Query: 1067 atggcagtctgggtcacccactgtcttaagacttctgacttctgtcagttgagaccccta 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97180838 atggcagtctgggtcacccactgtcttaagacttctgacttctgtcagttgagaccccta 97180779
Query: 1127 ttgtgagctggtgttgctgtgactt 1151
|||||||||||||||||||||||||
Sbjct: 97180778 ttgtgagctggtgttgctgtgactt 97180754
Score = 513 bits (259), Expect = e-143
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 207 cagacccagatccatggctatttcctcttcctcctgggacttgcccctcgtggctgtgtg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182661 cagacccagatccatggctatttcctcttcctcctgggacttgcccctcgtggctgtgtg 97182602
Query: 267 ccaggtaacatccacaccggacaagcagcagaactttaaaacatgtgctgagctggttcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182601 ccaggtaacatccacaccggacaagcagcagaactttaaaacatgtgctgagctggttcg 97182542
Query: 327 agaggctgccagactgggcgcttgcctggctttcctgcctgaggcatttgacttcattgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182541 agaggctgccagactgggcgcttgcctggctttcctgcctgaggcatttgacttcattgg 97182482
Query: 387 aagggaccctgaagagacgctacgcctgtctgagccactgggtgggaaacttttgggaga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182481 aagggaccctgaagagacgctacgcctgtctgagccactgggtgggaaacttttgggaga 97182422
Query: 447 atatacccagcttgccagg 465
|||||||||||||||||||
Sbjct: 97182421 atatacccagcttgccagg 97182403
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 568 gggtcagtagtggccacttacaggaagacgcatctgtgtgatgttgagattccagggcag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181971 gggtcagtagtggccacttacaggaagacgcatctgtgtgatgttgagattccagggcag 97181912
Query: 628 gggcctatgtgtgaaagcaactctaccatacctgggcccagtcttgagcctccggtcagc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181911 gggcctatgtgtgaaagcaactctaccatacctgggcccagtcttgagcctccggtcagc 97181852
Query: 688 acaccagcaggcaag 702
|||||||||||||||
Sbjct: 97181851 acaccagcaggcaag 97181837
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 701 agattggtctagctatctgctatgacatgcggttccctgaactctctctggcattggttc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181669 agattggtctagctatctgctatgacatgcggttccctgaactctctctggcattggttc 97181610
Query: 761 aggctggagcagaaatacttacctacccttcagcttttggatctgttacaggcccagccc 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181609 aggctggagcagaaatacttacctacccttcagcttttggatctgttacaggcccagccc 97181550
Query: 821 actgggaggt 830
||||||||||
Sbjct: 97181549 actgggaggt 97181540
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 2 gcccccggcgccaggctcctcttcttccaggcccctgttcggttcggatcctgttaatgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97183691 gcccccggcgccaggctcctcttcttccaggcccctgttcggttcggatcctgttaatgg 97183632
Query: 62 ttttggccgtgccttcatgtaggacctgctacctagcccgcccgccgcgg 111
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97183631 ttttggccgtgccttcatgtaggacctgctacctagcccgcccgccgcgg 97183582
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 462 cagggaatgtggactctggctgtccttgggtggtttccatgagcgtggccaagactggga 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182297 cagggaatgtggactctggctgtccttgggtggtttccatgagcgtggccaagactggga 97182238
Query: 522 gcagactcagaaaatctacaattgtcatgtgattctgaacaacacggg 569
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182237 gcagactcagaaaatctacaattgtcatgtgattctgaacaacacggg 97182190
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 110 ggctgggcttcatcatcaggcctcctcaccagctcctgtcccttcttttgggtcctcggc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97183014 ggctgggcttcatcatcaggcctcctcaccagctcctgtcccttcttttgggtcctcggc 97182955
Query: 170 tccggatacttcgactctcaatactttgtgctcagcccag 209
||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182954 tccggatacttcgactctcaatactttgtgctcagcccag 97182915
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,448,072
Number of extensions: 293
Number of successful extensions: 293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 7
Length of query: 1151
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1130
Effective length of database: 2,808,413,156
Effective search space: 3173506866280
Effective search space used: 3173506866280
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)