Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013222
(1028 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536134.2| PREDICTED: similar to nitrilase 1 [Canis famili... 550 e-163
Alignment gi|XP_535718.2| PREDICTED: similar to nitrilase family, member ... 165 2e-42
Alignment gi|XP_543524.2| PREDICTED: similar to Beta-ureidopropionase (Be... 62 9e-10
>ref|XP_536134.2| PREDICTED: similar to nitrilase 1 [Canis familiaris].
Length = 334
Score = 550 bits (1417), Expect(2) = e-163
Identities = 269/303 (88%), Positives = 273/303 (90%)
Frame = +1
Query: 46 FGRAFMLGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQV 225
F RA LGFIIRPPHQ CAQP PR+MAISSSSW+LPLVAVCQV
Sbjct: 2 FPRAGRLGFIIRPPHQLLPLLLCPGLRIPRLSVLCAQPSPRAMAISSSSWELPLVAVCQV 61
Query: 226 TSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYT 405
TSTPDKQ+NFKTCAELVREAARLGACLAFLPEAFDFI RDP ETLRLSEPLGG LLGEYT
Sbjct: 62 TSTPDKQENFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLRLSEPLGGNLLGEYT 121
Query: 406 QLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGP 585
QLARECGLWLSLGGFHERGQDWEQTQKIYNCHV+LNN GSVVATYRKTHLCDVEIPGQGP
Sbjct: 122 QLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNNEGSVVATYRKTHLCDVEIPGQGP 181
Query: 586 MCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTG 765
M ESNSTIPGPSLE PVSTPAGKIGLAICYDMRFPELSLAL QAGAEILTYPSAFGSVTG
Sbjct: 182 MRESNSTIPGPSLESPVSTPAGKIGLAICYDMRFPELSLALAQAGAEILTYPSAFGSVTG 241
Query: 766 PAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSERPGLCLA 945
PAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSE PGLCLA
Sbjct: 242 PAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLA 301
Query: 946 RID 954
RID
Sbjct: 302 RID 304
Score = 45.8 bits (107), Expect(2) = e-163
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +2
Query: 956 HYLRQLRQHLPVFPARRPDLYGSL 1027
+YLRQLRQHLPVF RRPDLYG+L
Sbjct: 306 NYLRQLRQHLPVFQHRRPDLYGNL 329
>ref|XP_535718.2| PREDICTED: similar to nitrilase family, member 2 [Canis
familiaris].
Length = 323
Score = 165 bits (418), Expect(2) = 2e-42
Identities = 105/270 (38%), Positives = 144/270 (53%), Gaps = 4/270 (1%)
Frame = +1
Query: 157 PRPRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFI 336
P+P S+A ++ L L+ + QV+S K +N LVREAAR GA + LPE F+
Sbjct: 42 PQPVSLA---GAFRLALIQL-QVSSI--KSENLARACGLVREAARQGAKVVSLPECFN-- 93
Query: 337 GRDPEETLRLSEPLGGKLLGEYTQ----LARECGLWLSLGGFHERGQDWEQTQKIYNCHV 504
P T E K+ GE TQ +A+EC ++L G E E K+YN
Sbjct: 94 --SPYGTKYFPE-YAEKIPGESTQKLSEVAKECSVYLIGGSIPE-----EDAGKLYNTCA 145
Query: 505 ILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMR 684
+ G+++ YRK HL D++IPG+ ES + PG S TP ++GL ICYDMR
Sbjct: 146 VFGPDGTLLVKYRKLHLFDIDIPGKITFHESKTLTPGDSFST-FDTPYCRVGLGICYDMR 204
Query: 685 FPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRA 864
F EL+ Q G ++L YP+AF TGPAHWE+L R RA++ Q YV A+
Sbjct: 205 FAELAQIYAQRGCQLLVYPAAFNMTTGPAHWELLQRGRAVDNQLYVATASPARDEQASYV 264
Query: 865 SYGHSMVVDPWGTVVARCSERPGLCLARID 954
++GHS VV PWG VVA+ + + ID
Sbjct: 265 AWGHSTVVSPWGEVVAKAGAEETVVYSDID 294
Score = 26.2 bits (56), Expect(2) = 2e-42
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 962 LRQLRQHLPVFPARRPDLY 1018
L ++RQ +P+F +R DLY
Sbjct: 298 LAEIRQQIPIFSQKRSDLY 316
>ref|XP_543524.2| PREDICTED: similar to Beta-ureidopropionase (Beta-alanine synthase)
(N-carbamoyl-beta-alanine amidohydrolase) (BUP-1) [Canis
familiaris].
Length = 384
Score = 62.0 bits (149), Expect = 9e-10
Identities = 42/130 (32%), Positives = 58/130 (44%)
Frame = +1
Query: 463 QDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVST 642
+D E ++N V+++N+G+V+ RK H IP G ES + G P T
Sbjct: 169 RDREHGDILWNTAVVISNSGAVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQT 223
Query: 643 PAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYV 822
GKI + ICY P L GAEI+ PSA + W V R AI C+
Sbjct: 224 QFGKIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPVEARNAAIANHCFT 283
Query: 823 VAAAQCGRHH 852
A + G+ H
Sbjct: 284 CAINRVGQEH 293
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,158,493
Number of extensions: 1417347
Number of successful extensions: 4990
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4982
Number of HSP's successfully gapped: 5
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013222
(1028 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033112.1| nitrilase homolog 1 [Bos taurus]. 530 e-156
Alignment gi|NP_001033222.1| omega-amidase NIT2 [Bos taurus]. 154 4e-39
Alignment gi|NP_001094520.1| beta-ureidopropionase [Bos taurus]. 64 3e-10
>ref|NP_001033112.1| nitrilase homolog 1 [Bos taurus].
Length = 328
Score = 530 bits (1366), Expect(2) = e-156
Identities = 260/298 (87%), Positives = 266/298 (89%)
Frame = +1
Query: 61 MLGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPD 240
MLGFIIRPPHQ CA PR R+MA SSS +LPLVAVCQVTSTPD
Sbjct: 1 MLGFIIRPPHQLLSLLSCPGLRIPRFSVLCAPPRLRTMAASSSFSELPLVAVCQVTSTPD 60
Query: 241 KQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARE 420
K+QNFKTCAEL+REAARLGACLAFLPEAFDFI RDPEET RLSEPL G LL EYTQLARE
Sbjct: 61 KEQNFKTCAELIREAARLGACLAFLPEAFDFIARDPEETRRLSEPLSGNLLEEYTQLARE 120
Query: 421 CGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESN 600
CGLWLSLGGFHERGQDWEQTQKIYNCHVI+NN GSVVATYRKTHLCDVEIPGQGPM ESN
Sbjct: 121 CGLWLSLGGFHERGQDWEQTQKIYNCHVIMNNMGSVVATYRKTHLCDVEIPGQGPMRESN 180
Query: 601 STIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE 780
STIPGPSLE P+STPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE
Sbjct: 181 STIPGPSLESPISTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE 240
Query: 781 VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSERPGLCLARID 954
VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSE PGLCLARID
Sbjct: 241 VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARID 298
Score = 39.7 bits (91), Expect(2) = e-156
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +2
Query: 956 HYLRQLRQHLPVFPARRPDLYGSL 1027
+YL+QLR+ LPVF RRPDLYG+L
Sbjct: 300 NYLQQLRKQLPVFQHRRPDLYGNL 323
>ref|NP_001033222.1| omega-amidase NIT2 [Bos taurus].
Length = 276
Score = 154 bits (389), Expect(2) = 4e-39
Identities = 86/252 (34%), Positives = 134/252 (53%), Gaps = 3/252 (1%)
Frame = +1
Query: 208 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRL---SEPL 378
+A+ Q+ + K +N L+REA++ GA + LPE F+ P T +E +
Sbjct: 6 LALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFN----SPYGTKYFPDYAEKI 61
Query: 379 GGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLC 558
G + +++A+EC +++ G E+ K+YN + G+++ +RK HL
Sbjct: 62 PGDSTQKLSEVAKECSMYVIGGSIPEK-----DAGKLYNTCAVFGPDGTLLVKHRKLHLF 116
Query: 559 DVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTY 738
D+++PG+ ES + PG S TP ++GL ICYD+RF EL+ Q G ++L Y
Sbjct: 117 DIDVPGKITFQESETLSPGDSFSL-FDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVY 175
Query: 739 PSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARC 918
P AF TGPAHWE+L R RA++ Q YV A+ ++GHS VV+PWG V+A+
Sbjct: 176 PGAFNLTTGPAHWELLQRGRAVDNQVYVATASPARDEKASYVAWGHSTVVNPWGEVLAKA 235
Query: 919 SERPGLCLARID 954
+ A ID
Sbjct: 236 GTEETIVYADID 247
Score = 26.2 bits (56), Expect(2) = 4e-39
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 962 LRQLRQHLPVFPARRPDLY 1018
L ++RQ +P+F +R DLY
Sbjct: 251 LAEIRQQIPIFSQKRSDLY 269
>ref|NP_001094520.1| beta-ureidopropionase [Bos taurus].
Length = 384
Score = 63.5 bits (153), Expect = 3e-10
Identities = 81/292 (27%), Positives = 117/292 (40%), Gaps = 25/292 (8%)
Frame = +1
Query: 154 QPRPRSMAISSSSWDLPLVA----VCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPE 321
Q RPR++ + PL A V QVT+ + + +V AA G + E
Sbjct: 66 QRRPRTVRVGLVQNRTPLPADTPVVKQVTALHRRME------AVVEVAAMCGVNIICFQE 119
Query: 322 A----FDFIGRDPEETLRLSEPL-GGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQK 486
A F F R+ +E G + +LAR+ G+ + + ER D
Sbjct: 120 AWTMPFAFCTREKLPWTEFAESAEDGPTIKFCQELARKHGM-VVVSPVLERDSDHGDV-- 176
Query: 487 IYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLA 666
++N V++ ++G+V+ RK H IP G ES + G P T G+I +
Sbjct: 177 LWNTAVVVASSGAVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVN 231
Query: 667 ICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGR 846
ICY P L GAEI+ PSA + W + R AI C+ A + GR
Sbjct: 232 ICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGR 291
Query: 847 HH---------EKRAS------YGHSMVVDPWGTVVARCSE-RPGLCLARID 954
H K+A YG S V P G+ S R GL +A +D
Sbjct: 292 EHFPNEFTSGDGKKAHRDFGYFYGSSYVAAPDGSRTPGLSRTRDGLLVAELD 343
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,449,633
Number of extensions: 1387674
Number of successful extensions: 5141
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5133
Number of HSP's successfully gapped: 5
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013222
(1028 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927783.3| PREDICTED: nitrilase homolog 1 isoform 2 [Su... 573 e-171
Alignment gi|XP_003132757.2| PREDICTED: omega-amidase NIT2-like [Sus scro... 121 5e-28
Alignment gi|XP_001929289.1| PREDICTED: beta-ureidopropionase [Sus scrofa]. 65 5e-11
>ref|XP_001927783.3| PREDICTED: nitrilase homolog 1 isoform 2 [Sus scrofa].
Length = 328
Score = 573 bits (1478), Expect(2) = e-171
Identities = 279/298 (93%), Positives = 279/298 (93%)
Frame = +1
Query: 61 MLGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPD 240
MLGFIIRPPHQ CAQPRPRSMAISSSSWDLPLVAVCQVTSTPD
Sbjct: 1 MLGFIIRPPHQLLSLLLGPRLRILRLSILCAQPRPRSMAISSSSWDLPLVAVCQVTSTPD 60
Query: 241 KQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARE 420
KQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARE
Sbjct: 61 KQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARE 120
Query: 421 CGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESN 600
CGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESN
Sbjct: 121 CGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESN 180
Query: 601 STIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE 780
STIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE
Sbjct: 181 STIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE 240
Query: 781 VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSERPGLCLARID 954
VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSE PGLCLARID
Sbjct: 241 VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARID 298
Score = 47.0 bits (110), Expect(2) = e-171
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 956 HYLRQLRQHLPVFPARRPDLYGSL 1027
+YLRQLRQHLPVF RRPDLYGSL
Sbjct: 300 NYLRQLRQHLPVFQHRRPDLYGSL 323
>ref|XP_003132757.2| PREDICTED: omega-amidase NIT2-like [Sus scrofa].
Length = 230
Score = 121 bits (304), Expect = 5e-28
Identities = 70/198 (35%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Frame = +1
Query: 208 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETL---RLSEPL 378
+A+ Q+ + K N ++EAA+ GA + LPE F+ P T +E +
Sbjct: 13 LALIQLHVSSVKSDNLTRACGFIQEAAKQGAKIISLPECFN----SPYGTKYFPEYAEKI 68
Query: 379 GGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLC 558
G + +++A+ECG+++ G E E K+YN + G+++A YRK HL
Sbjct: 69 PGDSTQKLSEVAKECGVYVIGGSIPE-----EDAGKLYNTCAVFGPDGTLLAKYRKLHLF 123
Query: 559 DVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTY 738
D+++PG+ ES + PG S TP ++GL ICYD+RF EL+ Q G ++L Y
Sbjct: 124 DIDVPGKITFQESKTLSPGDSFST-FDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVY 182
Query: 739 PSAFGSVTGPAHWEVLLR 792
P AF TGPAHWE+L R
Sbjct: 183 PGAFNLTTGPAHWELLQR 200
>ref|XP_001929289.1| PREDICTED: beta-ureidopropionase [Sus scrofa].
Length = 384
Score = 65.5 bits (158), Expect = 5e-11
Identities = 80/292 (27%), Positives = 114/292 (39%), Gaps = 25/292 (8%)
Frame = +1
Query: 154 QPRPRSMAISSSSWDLPLVA----VCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPE 321
Q RPR++ + PL A V QVT+ + A + AA G + E
Sbjct: 66 QRRPRTVRVGLVQNRTPLPADTPVVKQVTAL------HRRIAAIAEVAAMCGVNIICFQE 119
Query: 322 A----FDFIGRDPEETLRLSEPLGGKLLGEYTQ-LARECGLWLSLGGFHERGQDWEQTQK 486
A F F R+ +E + Q L+R+ G+ + + ER D E
Sbjct: 120 AWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQELSRKHGM-VVVSPILER--DVEHGDV 176
Query: 487 IYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLA 666
++N V+++N+G V+ RK H IP G ES + G P TP G+I +
Sbjct: 177 LWNTAVVISNSGKVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQTPFGRIAVN 231
Query: 667 ICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGR 846
ICY P L GAEI+ PSA V + W + R AI C+ A + G
Sbjct: 232 ICYGRHHPLNWLMFSINGAEIIFNPSATIGVLSESLWPIEARNAAIANHCFTCAINRVGE 291
Query: 847 ---------------HHEKRASYGHSMVVDPWGT-VVARCSERPGLCLARID 954
H + YG S V P G+ R GL +A +D
Sbjct: 292 ERFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPGLPRNRDGLLVAELD 343
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,320,875
Number of extensions: 893515
Number of successful extensions: 3249
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3243
Number of HSP's successfully gapped: 4
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013222
(1028 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036179.1| nitrilase homolog 1 isoform 1 [Mus musculus]. 500 e-149
Alignment gi|NP_001229509.1| nitrilase homolog 1 isoform 2 [Mus musculus]. 477 e-142
Alignment gi|NP_075664.1| omega-amidase NIT2 [Mus musculus]. 159 5e-40
Alignment gi|NP_598756.1| beta-ureidopropionase [Mus musculus]. 61 1e-09
>ref|NP_036179.1| nitrilase homolog 1 isoform 1 [Mus musculus].
Length = 323
Score = 500 bits (1288), Expect(2) = e-149
Identities = 243/298 (81%), Positives = 261/298 (87%)
Frame = +1
Query: 61 MLGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPD 240
MLGFI RPPHQ C QPRPR+M+ SS+SW+LPLVAVCQVTSTP+
Sbjct: 1 MLGFITRPPHQLLCTGYRLLRTPVL----CTQPRPRTMS-SSTSWELPLVAVCQVTSTPN 55
Query: 241 KQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARE 420
KQ+NFKTCAELV+EAARLGACLAFLPEAFDFI R+P ETL LSEPL G LLG+Y+QLARE
Sbjct: 56 KQENFKTCAELVQEAARLGACLAFLPEAFDFIARNPAETLLLSEPLNGDLLGQYSQLARE 115
Query: 421 CGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESN 600
CG+WLSLGGFHERGQDWEQ QKIYNCHV+LN+ GSVVA+YRKTHLCDVEIPGQGPM ESN
Sbjct: 116 CGIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRESN 175
Query: 601 STIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE 780
T PG +LEPPV TPAGK+GLAICYDMRFPELSL L QAGAEILTYPSAFGSVTGPAHWE
Sbjct: 176 YTKPGGTLEPPVKTPAGKVGLAICYDMRFPELSLKLAQAGAEILTYPSAFGSVTGPAHWE 235
Query: 781 VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSERPGLCLARID 954
VLLRARAIE+QCYV+AAAQCGRHHE RASYGHSMVVDPWGTVVARCSE PGLCLARID
Sbjct: 236 VLLRARAIESQCYVIAAAQCGRHHETRASYGHSMVVDPWGTVVARCSEGPGLCLARID 293
Score = 45.8 bits (107), Expect(2) = e-149
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 956 HYLRQLRQHLPVFPARRPDLYGSL 1027
H+L+Q+RQHLPVF RRPDLYGSL
Sbjct: 295 HFLQQMRQHLPVFQHRRPDLYGSL 318
>ref|NP_001229509.1| nitrilase homolog 1 isoform 2 [Mus musculus].
Length = 290
Score = 477 bits (1228), Expect(2) = e-142
Identities = 226/258 (87%), Positives = 242/258 (93%)
Frame = +1
Query: 181 SSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETL 360
SS+SW+LPLVAVCQVTSTP+KQ+NFKTCAELV+EAARLGACLAFLPEAFDFI R+P ETL
Sbjct: 3 SSTSWELPLVAVCQVTSTPNKQENFKTCAELVQEAARLGACLAFLPEAFDFIARNPAETL 62
Query: 361 RLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATY 540
LSEPL G LLG+Y+QLARECG+WLSLGGFHERGQDWEQ QKIYNCHV+LN+ GSVVA+Y
Sbjct: 63 LLSEPLNGDLLGQYSQLARECGIWLSLGGFHERGQDWEQNQKIYNCHVLLNSKGSVVASY 122
Query: 541 RKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAG 720
RKTHLCDVEIPGQGPM ESN T PG +LEPPV TPAGK+GLAICYDMRFPELSL L QAG
Sbjct: 123 RKTHLCDVEIPGQGPMRESNYTKPGGTLEPPVKTPAGKVGLAICYDMRFPELSLKLAQAG 182
Query: 721 AEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWG 900
AEILTYPSAFGSVTGPAHWEVLLRARAIE+QCYV+AAAQCGRHHE RASYGHSMVVDPWG
Sbjct: 183 AEILTYPSAFGSVTGPAHWEVLLRARAIESQCYVIAAAQCGRHHETRASYGHSMVVDPWG 242
Query: 901 TVVARCSERPGLCLARID 954
TVVARCSE PGLCLARID
Sbjct: 243 TVVARCSEGPGLCLARID 260
Score = 45.8 bits (107), Expect(2) = e-142
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 956 HYLRQLRQHLPVFPARRPDLYGSL 1027
H+L+Q+RQHLPVF RRPDLYGSL
Sbjct: 262 HFLQQMRQHLPVFQHRRPDLYGSL 285
>ref|NP_075664.1| omega-amidase NIT2 [Mus musculus].
Length = 276
Score = 159 bits (403), Expect(2) = 5e-40
Identities = 92/252 (36%), Positives = 133/252 (52%), Gaps = 3/252 (1%)
Frame = +1
Query: 208 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRL---SEPL 378
+A+ Q+ + K N LVREAA+ GA + LPE F+ P T +E +
Sbjct: 6 LALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFN----SPYGTTYFPDYAEKI 61
Query: 379 GGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLC 558
G+ + +++A+E ++L G E E K+YN + GS++ +RK HL
Sbjct: 62 PGESTQKLSEVAKESSIYLIGGSIPE-----EDAGKLYNTCSVFGPDGSLLVKHRKIHLF 116
Query: 559 DVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTY 738
D+++PG+ ES + PG S TP K+GL ICYDMRF EL+ Q G ++L Y
Sbjct: 117 DIDVPGKITFQESKTLSPGDSFST-FDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVY 175
Query: 739 PSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARC 918
P AF TGPAHWE+L RARA++ Q YV A+ ++GHS VVDPWG V+ +
Sbjct: 176 PGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKA 235
Query: 919 SERPGLCLARID 954
+ + ID
Sbjct: 236 GTEETILYSDID 247
Score = 23.9 bits (50), Expect(2) = 5e-40
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 962 LRQLRQHLPVFPARRPDLY 1018
L ++RQ +P+ +R DLY
Sbjct: 251 LAEIRQQIPILKQKRADLY 269
>ref|NP_598756.1| beta-ureidopropionase [Mus musculus].
Length = 393
Score = 61.2 bits (147), Expect = 1e-09
Identities = 70/259 (27%), Positives = 97/259 (37%), Gaps = 22/259 (8%)
Frame = +1
Query: 226 TSTPDKQQN---FKTCAELVREAARLGACLAFLPEA----FDFIGRDPEETLRLSEPLGG 384
TS P +Q K+ E+ AA G + EA F F R+ +E
Sbjct: 85 TSAPVAEQVSALHKSIEEIAEVAAMCGVNIICFQEAWNMPFAFCTREKLPWTEFAESAED 144
Query: 385 KLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDV 564
L + Q + + + ER D E ++N V+++N+G V+ RK H
Sbjct: 145 GLTTRFCQKLAKKHNMVVVSPILER--DREHGGVLWNTAVVISNSGLVMGKTRKNH---- 198
Query: 565 EIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPS 744
IP G ES + G P T G+I + ICY P L GAEI+ PS
Sbjct: 199 -IPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPS 257
Query: 745 AFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGR---------------HHEKRASYGHS 879
A + W + R AI C+ A + G+ HH+ YG S
Sbjct: 258 ATIGELSESLWPIEARNAAIANHCFTCALNRVGQEHFPNEFTSGDGKKAHHDLGYFYGSS 317
Query: 880 MVVDPWGTVVARCSERPGL 936
V P G S PGL
Sbjct: 318 YVAAPDG------SRTPGL 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,249,066
Number of extensions: 1167174
Number of successful extensions: 4172
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4161
Number of HSP's successfully gapped: 7
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013222
(1028 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005591.1| nitrilase homolog 1 isoform 1 [Homo sapiens]. 536 e-159
Alignment gi|NP_001172022.1| nitrilase homolog 1 isoform 3 [Homo sapiens]. 515 e-153
Alignment gi|NP_001172023.1| nitrilase homolog 1 isoform 4 [Homo sapiens]. 510 e-151
Alignment gi|NP_001172021.1| nitrilase homolog 1 isoform 2 [Homo sapiens]. 419 e-117
Alignment gi|NP_064587.1| omega-amidase NIT2 [Homo sapiens]. 160 8e-41
Alignment gi|NP_057411.1| beta-ureidopropionase [Homo sapiens]. 62 9e-10
>ref|NP_005591.1| nitrilase homolog 1 isoform 1 [Homo sapiens].
Length = 327
Score = 536 bits (1380), Expect(2) = e-159
Identities = 261/298 (87%), Positives = 270/298 (90%)
Frame = +1
Query: 61 MLGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPD 240
MLGFI RPPH+ CAQPRPR+MAISSSS +LPLVAVCQVTSTPD
Sbjct: 1 MLGFITRPPHRFLSLLCPGLRIPQLSVL-CAQPRPRAMAISSSSCELPLVAVCQVTSTPD 59
Query: 241 KQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARE 420
KQQNFKTCAELVREAARLGACLAFLPEAFDFI RDP ETL LSEPLGGKLL EYTQLARE
Sbjct: 60 KQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGKLLEEYTQLARE 119
Query: 421 CGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESN 600
CGLWLSLGGFHERGQDWEQTQKIYNCHV+LN+ G+VVATYRKTHLCDVEIPGQGPMCESN
Sbjct: 120 CGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESN 179
Query: 601 STIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE 780
ST+PGPSLE PVSTPAGKIGLA+CYDMRFPELSLAL QAGAEILTYPSAFGS+TGPAHWE
Sbjct: 180 STMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALAQAGAEILTYPSAFGSITGPAHWE 239
Query: 781 VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSERPGLCLARID 954
VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSE PGLCLARID
Sbjct: 240 VLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSEGPGLCLARID 297
Score = 44.3 bits (103), Expect(2) = e-159
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 956 HYLRQLRQHLPVFPARRPDLYGSL 1027
+YLRQLR+HLPVF RRPDLYG+L
Sbjct: 299 NYLRQLRRHLPVFQHRRPDLYGNL 322
>ref|NP_001172022.1| nitrilase homolog 1 isoform 3 [Homo sapiens].
Length = 312
Score = 515 bits (1327), Expect(2) = e-153
Identities = 247/264 (93%), Positives = 255/264 (96%)
Frame = +1
Query: 163 PRSMAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGR 342
PR+MAISSSS +LPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFI R
Sbjct: 19 PRAMAISSSSCELPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIAR 78
Query: 343 DPEETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTG 522
DP ETL LSEPLGGKLL EYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHV+LN+ G
Sbjct: 79 DPAETLHLSEPLGGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKG 138
Query: 523 SVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSL 702
+VVATYRKTHLCDVEIPGQGPMCESNST+PGPSLE PVSTPAGKIGLA+CYDMRFPELSL
Sbjct: 139 AVVATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPELSL 198
Query: 703 ALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSM 882
AL QAGAEILTYPSAFGS+TGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSM
Sbjct: 199 ALAQAGAEILTYPSAFGSITGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSM 258
Query: 883 VVDPWGTVVARCSERPGLCLARID 954
VVDPWGTVVARCSE PGLCLARID
Sbjct: 259 VVDPWGTVVARCSEGPGLCLARID 282
Score = 44.3 bits (103), Expect(2) = e-153
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 956 HYLRQLRQHLPVFPARRPDLYGSL 1027
+YLRQLR+HLPVF RRPDLYG+L
Sbjct: 284 NYLRQLRRHLPVFQHRRPDLYGNL 307
>ref|NP_001172023.1| nitrilase homolog 1 isoform 4 [Homo sapiens].
Length = 291
Score = 510 bits (1314), Expect(2) = e-151
Identities = 245/261 (93%), Positives = 252/261 (96%)
Frame = +1
Query: 172 MAISSSSWDLPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPE 351
MAISSSS +LPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFI RDP
Sbjct: 1 MAISSSSCELPLVAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPA 60
Query: 352 ETLRLSEPLGGKLLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVV 531
ETL LSEPLGGKLL EYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHV+LN+ G+VV
Sbjct: 61 ETLHLSEPLGGKLLEEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVV 120
Query: 532 ATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALV 711
ATYRKTHLCDVEIPGQGPMCESNST+PGPSLE PVSTPAGKIGLA+CYDMRFPELSLAL
Sbjct: 121 ATYRKTHLCDVEIPGQGPMCESNSTMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALA 180
Query: 712 QAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVD 891
QAGAEILTYPSAFGS+TGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVD
Sbjct: 181 QAGAEILTYPSAFGSITGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVD 240
Query: 892 PWGTVVARCSERPGLCLARID 954
PWGTVVARCSE PGLCLARID
Sbjct: 241 PWGTVVARCSEGPGLCLARID 261
Score = 44.3 bits (103), Expect(2) = e-151
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +2
Query: 956 HYLRQLRQHLPVFPARRPDLYGSL 1027
+YLRQLR+HLPVF RRPDLYG+L
Sbjct: 263 NYLRQLRRHLPVFQHRRPDLYGNL 286
>ref|NP_001172021.1| nitrilase homolog 1 isoform 2 [Homo sapiens].
Length = 243
Score = 419 bits (1076), Expect = e-117
Identities = 204/240 (85%), Positives = 213/240 (88%)
Frame = +1
Query: 61 MLGFIIRPPHQXXXXXXXXXXXXXXXXXXCAQPRPRSMAISSSSWDLPLVAVCQVTSTPD 240
MLGFI RPPH+ CAQPRPR+MAISSSS +LPLVAVCQVTSTPD
Sbjct: 1 MLGFITRPPHRFLSLLCPGLRIPQLSVL-CAQPRPRAMAISSSSCELPLVAVCQVTSTPD 59
Query: 241 KQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGKLLGEYTQLARE 420
KQQNFKTCAELVREAARLGACLAFLPEAFDFI RDP ETL LSEPLGGKLL EYTQLARE
Sbjct: 60 KQQNFKTCAELVREAARLGACLAFLPEAFDFIARDPAETLHLSEPLGGKLLEEYTQLARE 119
Query: 421 CGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESN 600
CGLWLSLGGFHERGQDWEQTQKIYNCHV+LN+ G+VVATYRKTHLCDVEIPGQGPMCESN
Sbjct: 120 CGLWLSLGGFHERGQDWEQTQKIYNCHVLLNSKGAVVATYRKTHLCDVEIPGQGPMCESN 179
Query: 601 STIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWE 780
ST+PGPSLE PVSTPAGKIGLA+CYDMRFPELSLAL QAGAEILTYPSAFGS+TGPAHWE
Sbjct: 180 STMPGPSLESPVSTPAGKIGLAVCYDMRFPELSLALAQAGAEILTYPSAFGSITGPAHWE 239
>ref|NP_064587.1| omega-amidase NIT2 [Homo sapiens].
Length = 276
Score = 160 bits (404), Expect(2) = 8e-41
Identities = 88/249 (35%), Positives = 133/249 (53%)
Frame = +1
Query: 208 VAVCQVTSTPDKQQNFKTCAELVREAARLGACLAFLPEAFDFIGRDPEETLRLSEPLGGK 387
+A+ Q+ + K N +REAA GA + LPE F+ + +E + G+
Sbjct: 6 LALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNS-PYGAKYFPEYAEKIPGE 64
Query: 388 LLGEYTQLARECGLWLSLGGFHERGQDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVE 567
+ +++A+EC ++L G E E K+YN + G+++A YRK HL D++
Sbjct: 65 STQKLSEVAKECSIYLIGGSIPE-----EDAGKLYNTCAVFGPDGTLLAKYRKIHLFDID 119
Query: 568 IPGQGPMCESNSTIPGPSLEPPVSTPAGKIGLAICYDMRFPELSLALVQAGAEILTYPSA 747
+PG+ ES + PG S TP ++GL ICYDMRF EL+ Q G ++L YP A
Sbjct: 120 VPGKITFQESKTLSPGDSFST-FDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGA 178
Query: 748 FGSVTGPAHWEVLLRARAIETQCYVVAAAQCGRHHEKRASYGHSMVVDPWGTVVARCSER 927
F TGPAHWE+L R+RA++ Q YV A+ ++GHS VV+PWG V+A+
Sbjct: 179 FNLTTGPAHWELLQRSRAVDNQVYVATASPARDDKASYVAWGHSTVVNPWGEVLAKAGTE 238
Query: 928 PGLCLARID 954
+ + ID
Sbjct: 239 EAIVYSDID 247
Score = 26.2 bits (56), Expect(2) = 8e-41
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 962 LRQLRQHLPVFPARRPDLY 1018
L ++RQ +PVF +R DLY
Sbjct: 251 LAEIRQQIPVFRQKRSDLY 269
>ref|NP_057411.1| beta-ureidopropionase [Homo sapiens].
Length = 384
Score = 62.0 bits (149), Expect = 9e-10
Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 16/180 (8%)
Frame = +1
Query: 463 QDWEQTQKIYNCHVILNNTGSVVATYRKTHLCDVEIPGQGPMCESNSTIPGPSLEPPVST 642
+D E ++N V+++N+G+V+ RK H IP G ES + G P T
Sbjct: 169 RDSEHGDVLWNTAVVISNSGAVLGKTRKNH-----IPRVGDFNESTYYMEGNLGHPVFQT 223
Query: 643 PAGKIGLAICYDMRFPELSLALVQAGAEILTYPSAFGSVTGPAHWEVLLRARAIETQCYV 822
G+I + ICY P L GAEI+ PSA + W + R AI C+
Sbjct: 224 QFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFT 283
Query: 823 VAAAQCGRHH---------EKRAS------YGHSMVVDPWGTVVARCS-ERPGLCLARID 954
A + G H K+A YG S V P + S R GL +A++D
Sbjct: 284 CAINRVGTEHFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDSSRTPGLSRSRDGLLVAKLD 343
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,374,117
Number of extensions: 1401287
Number of successful extensions: 5152
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5141
Number of HSP's successfully gapped: 10
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013222
(1028 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 513 e-143
>Sscrofa_Chr04
|| Length = 143465943
Score = 513 bits (259), Expect = e-143
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 159 cagacccagatccatggctatttcctcttcctcctgggacttgcccctcgtggctgtgtg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182661 cagacccagatccatggctatttcctcttcctcctgggacttgcccctcgtggctgtgtg 97182602
Query: 219 ccaggtaacatccacaccggacaagcagcagaactttaaaacatgtgctgagctggttcg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182601 ccaggtaacatccacaccggacaagcagcagaactttaaaacatgtgctgagctggttcg 97182542
Query: 279 agaggctgccagactgggcgcttgcctggctttcctgcctgaggcatttgacttcattgg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182541 agaggctgccagactgggcgcttgcctggctttcctgcctgaggcatttgacttcattgg 97182482
Query: 339 aagggaccctgaagagacgctacgcctgtctgagccactgggtgggaaacttttgggaga 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182481 aagggaccctgaagagacgctacgcctgtctgagccactgggtgggaaacttttgggaga 97182422
Query: 399 atatacccagcttgccagg 417
|||||||||||||||||||
Sbjct: 97182421 atatacccagcttgccagg 97182403
Score = 430 bits (217), Expect = e-118
Identities = 248/253 (98%), Gaps = 4/253 (1%)
Strand = Plus / Minus
Query: 779 aggtgttgctgcgggcccgagccattgaaactcagtgctatgtagtggcggcagcacagt 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181078 aggtgttgctgcgggcccgagccattgaaactcagtgctatgtagtggcggcagcacagt 97181019
Query: 839 gtggacgccaccatgagaagagagcaagttatggccatagcatggtggtagatccctggg 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181018 gtggacgccaccatgagaagagagcaagttatggccatagcatggtggtagatccctggg 97180959
Query: 899 gaacggtggtggcccgctgctctgaaagaccaggcctctgccttgcccgaattga-ctc- 956
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 97180958 gaacggtggtggcccgctgctctgaaggaccaggcctctgccttgcccgaattgacctca 97180899
Query: 957 attatctgcgacagttgcgccaacacctgcctgtgttcccagca-cgcaggcctgatctc 1015
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 97180898 attatctgcgacagttgcgccaacacctgcctgtgtt-ccagcaccgcaggcctgatctc 97180840
Query: 1016 tatggcagtctgg 1028
|||||||||||||
Sbjct: 97180839 tatggcagtctgg 97180827
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 520 gggtcagtagtggccacttacaggaagacgcatctgtgtgatgttgagattccagggcag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181971 gggtcagtagtggccacttacaggaagacgcatctgtgtgatgttgagattccagggcag 97181912
Query: 580 gggcctatgtgtgaaagcaactctaccatacctgggcccagtcttgagcctccggtcagc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181911 gggcctatgtgtgaaagcaactctaccatacctgggcccagtcttgagcctccggtcagc 97181852
Query: 640 acaccagcaggcaag 654
|||||||||||||||
Sbjct: 97181851 acaccagcaggcaag 97181837
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 653 agattggtctagctatctgctatgacatgcggttccctgaactctctctggcattggttc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181669 agattggtctagctatctgctatgacatgcggttccctgaactctctctggcattggttc 97181610
Query: 713 aggctggagcagaaatacttacctacccttcagcttttggatctgttacaggcccagccc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97181609 aggctggagcagaaatacttacctacccttcagcttttggatctgttacaggcccagccc 97181550
Query: 773 actgggaggt 782
||||||||||
Sbjct: 97181549 actgggaggt 97181540
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 414 cagggaatgtggactctggctgtccttgggtggtttccatgagcgtggccaagactggga 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182297 cagggaatgtggactctggctgtccttgggtggtttccatgagcgtggccaagactggga 97182238
Query: 474 gcagactcagaaaatctacaattgtcatgtgattctgaacaacacggg 521
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182237 gcagactcagaaaatctacaattgtcatgtgattctgaacaacacggg 97182190
Score = 200 bits (101), Expect = 1e-48
Identities = 104/105 (99%)
Strand = Plus / Minus
Query: 57 cttcatgctgggcttcatcatcaggcctcctcaccagctcctgtcccttcttttgggtcc 116
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97183019 cttcaggctgggcttcatcatcaggcctcctcaccagctcctgtcccttcttttgggtcc 97182960
Query: 117 tcggctccggatacttcgactctcaatactttgtgctcagcccag 161
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97182959 tcggctccggatacttcgactctcaatactttgtgctcagcccag 97182915
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 1 tcctcttcttccaggcccctgttcggttcggatcctgttaatggttttggccgtgccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97183675 tcctcttcttccaggcccctgttcggttcggatcctgttaatggttttggccgtgccttc 97183616
Query: 61 atg 63
|||
Sbjct: 97183615 atg 97183613
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,860,028
Number of extensions: 157
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 7
Length of query: 1028
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1007
Effective length of database: 2,808,413,156
Effective search space: 2828072048092
Effective search space used: 2828072048092
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)