Animal-Genome cDNA 20110601C-013231


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013231
         (1440 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535582.1| PREDICTED: similar to Transmembrane protein 50B...   333   2e-91
Alignment   gi|XP_535354.1| PREDICTED: similar to Transmembrane protein 50A...   242   6e-64

>ref|XP_535582.1| PREDICTED: similar to Transmembrane protein 50B (HCV
           p7-transregulated protein 3) [Canis familiaris].
          Length = 158

 Score =  333 bits (855), Expect = 2e-91
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +1

Query: 148 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 327
           MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT
Sbjct: 1   MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60

Query: 328 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 507
           CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA
Sbjct: 61  CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120

Query: 508 YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT 621
           YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT
Sbjct: 121 YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT 158


>ref|XP_535354.1| PREDICTED: similar to Transmembrane protein 50A (Small membrane
           protein 1) [Canis familiaris].
          Length = 157

 Score =  242 bits (618), Expect = 6e-64
 Identities = 111/158 (70%), Positives = 130/158 (82%), Gaps = 1/158 (0%)
 Frame = +1

Query: 148 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 327
           M+GFL+  R  EC  IDW E+RN +ASV AG+LFFTGWWI+IDAAV+YP  E+ NH++H 
Sbjct: 1   MSGFLEGLRCSEC--IDWGEKRNTIASVAAGVLFFTGWWIIIDAAVIYPTMEEFNHSYHA 58

Query: 328 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 507
           CGV +T+AF MINAVSN QVRGDSY  GCLG+TGAR+WLFIGFML FGSLIASMWILFG 
Sbjct: 59  CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 118

Query: 508 YVT-QNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 618
           YV  +   VYPG+AVFFQNA IFF  L++KFGRTE+LW
Sbjct: 119 YVAKEKAIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 156


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,444,153
Number of extensions: 1186822
Number of successful extensions: 3015
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3013
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 373
Effective length of database: 15,307,552
Effective search space: 5709716896
Effective search space used: 5709716896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013231

Animal-Genome cDNA 20110601C-013231


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013231
         (1440 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029958.1| transmembrane protein 50B [Bos taurus].           333   2e-91
Alignment   gi|NP_001068631.1| transmembrane protein 50A [Bos taurus].           241   9e-64

>ref|NP_001029958.1| transmembrane protein 50B [Bos taurus].
          Length = 158

 Score =  333 bits (855), Expect = 2e-91
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +1

Query: 148 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 327
           MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT
Sbjct: 1   MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60

Query: 328 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 507
           CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA
Sbjct: 61  CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120

Query: 508 YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT 621
           YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT
Sbjct: 121 YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT 158


>ref|NP_001068631.1| transmembrane protein 50A [Bos taurus].
          Length = 157

 Score =  241 bits (616), Expect = 9e-64
 Identities = 109/158 (68%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
 Frame = +1

Query: 148 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 327
           M+GFL+  R  EC  IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP+ ++ NH++H 
Sbjct: 1   MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPRMDEFNHSYHA 58

Query: 328 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 507
           CGV +T+AF MINAVSN QVRGDSY  GCLG+TGAR+WLFIGFML FGSLIASMWILFG 
Sbjct: 59  CGVIATVAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 118

Query: 508 YVT-QNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 618
           YV  +   VYPG+AVFFQNA IFF  L++KFGRTE+LW
Sbjct: 119 YVAKEKAIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 156


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,586,120
Number of extensions: 1171616
Number of successful extensions: 2975
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2968
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 374
Effective length of database: 14,174,046
Effective search space: 5301093204
Effective search space used: 5301093204
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013231
         (1440 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001230555.1| transmembrane protein 50A [Sus scrofa].           245   5e-65

>ref|NP_001230555.1| transmembrane protein 50A [Sus scrofa].
          Length = 157

 Score =  245 bits (625), Expect = 5e-65
 Identities = 111/158 (70%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
 Frame = +1

Query: 148 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 327
           M+GFL+  R  EC  IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP  E+ NH++H 
Sbjct: 1   MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHA 58

Query: 328 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 507
           CGV +T+AF MINAVSN QVRGDSY  GCLG+TGAR+WLFIGFML FGSLIASMWILFG 
Sbjct: 59  CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 118

Query: 508 YVT-QNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 618
           YV  + T VYPG+AVFFQNA IFF  L++KFGRTE+LW
Sbjct: 119 YVAKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 156


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,085,501
Number of extensions: 740917
Number of successful extensions: 1877
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1875
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 377
Effective length of database: 8,779,541
Effective search space: 3309886957
Effective search space used: 3309886957
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013231
         (1440 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_084294.1| transmembrane protein 50B [Mus musculus].            328   8e-90
Alignment   gi|NP_082211.1| transmembrane protein 50A [Mus musculus].            245   7e-65

>ref|NP_084294.1| transmembrane protein 50B [Mus musculus].
          Length = 158

 Score =  328 bits (840), Expect = 8e-90
 Identities = 155/157 (98%), Positives = 155/157 (98%)
 Frame = +1

Query: 148 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 327
           MAGFLDNFRWPECECIDWSERRN VASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT
Sbjct: 1   MAGFLDNFRWPECECIDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60

Query: 328 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 507
           CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA
Sbjct: 61  CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120

Query: 508 YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 618
           YVTQN DVYPGLAVFFQNALIFFSTLIYKFGRTEELW
Sbjct: 121 YVTQNIDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 157


>ref|NP_082211.1| transmembrane protein 50A [Mus musculus].
          Length = 157

 Score =  245 bits (625), Expect = 7e-65
 Identities = 111/158 (70%), Positives = 133/158 (84%), Gaps = 1/158 (0%)
 Frame = +1

Query: 148 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 327
           M+GFL+  R  EC  +DW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP+ +Q NH++HT
Sbjct: 1   MSGFLEGSRCSEC--MDWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRMDQFNHSYHT 58

Query: 328 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 507
           CGV +T+AF MINAVSN QVRGDSY  GCLG+TGAR+WLFIGFML FGSLIASMWILFG 
Sbjct: 59  CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 118

Query: 508 YVTQNTD-VYPGLAVFFQNALIFFSTLIYKFGRTEELW 618
           YV +  D VYPG+AVFFQNA IFF  L++KFGRTE+LW
Sbjct: 119 YVAKEKDVVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 156


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,875,747
Number of extensions: 1033076
Number of successful extensions: 2488
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2483
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 375
Effective length of database: 12,463,779
Effective search space: 4673917125
Effective search space used: 4673917125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013231
         (1440 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006125.2| transmembrane protein 50B [Homo sapiens].            333   2e-91
Alignment   gi|NP_055128.1| transmembrane protein 50A [Homo sapiens].            242   7e-64

>ref|NP_006125.2| transmembrane protein 50B [Homo sapiens].
          Length = 158

 Score =  333 bits (855), Expect = 2e-91
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +1

Query: 148 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 327
           MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT
Sbjct: 1   MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60

Query: 328 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 507
           CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA
Sbjct: 61  CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120

Query: 508 YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT 621
           YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT
Sbjct: 121 YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT 158


>ref|NP_055128.1| transmembrane protein 50A [Homo sapiens].
          Length = 157

 Score =  242 bits (617), Expect = 7e-64
 Identities = 109/158 (68%), Positives = 130/158 (82%), Gaps = 1/158 (0%)
 Frame = +1

Query: 148 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 327
           M+GFL+  R  EC  IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP  +  NH++H 
Sbjct: 1   MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHA 58

Query: 328 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 507
           CGV +T+AF MINAVSN QVRGDSY  GCLG+TGAR+WLF+GFML FGSLIASMWILFG 
Sbjct: 59  CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGG 118

Query: 508 YVTQNTD-VYPGLAVFFQNALIFFSTLIYKFGRTEELW 618
           YV +  D VYPG+AVFFQNA IFF  L++KFGRTE+LW
Sbjct: 119 YVAKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 156


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,859,799
Number of extensions: 1194556
Number of successful extensions: 3015
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3014
Number of HSP's successfully gapped: 2
Length of query: 480
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 374
Effective length of database: 14,802,980
Effective search space: 5536314520
Effective search space used: 5536314520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-013231
         (1440 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                         206   2e-50

>Sscrofa_Chr13 
||          Length = 218635234

 Score =  206 bits (104), Expect = 2e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         tcccgggggctgaagtggagcggagggcgcgggctagacagctgcacggcagcttcctcc 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206903726 tcccgggggctgaagtggagcggagggcgcgggctagacagctgcacggcagcttcctcc 206903667

                                                             
Query: 61        tctgcgcgcgcgcctcgcgttggcgtgggcgtgggggaagccgg 104
                 ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206903666 tctgcgcgcgcgcctcgcgttggcgtgggcgtgggggaagccgg 206903623


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,525,171
Number of extensions: 293
Number of successful extensions: 293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 1
Length of query: 1440
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1419
Effective length of database: 2,808,413,156
Effective search space: 3985138268364
Effective search space used: 3985138268364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)