Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013240
(1676 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548187.2| PREDICTED: similar to UDP-GalNAc:Neu5Acalpha2-3... 741 0.0
Alignment gi|XP_538250.2| PREDICTED: similar to Beta-1,4 N-acetylgalactos... 364 e-100
>ref|XP_548187.2| PREDICTED: similar to UDP-GalNAc:Neu5Acalpha2-3Galbeta-R
beta1,4-N-acetylgalactosaminyltransferase [Canis
familiaris].
Length = 534
Score = 741 bits (1912), Expect = 0.0
Identities = 365/498 (73%), Positives = 424/498 (85%), Gaps = 4/498 (0%)
Frame = +2
Query: 173 LSILKISMVLLVLSVGLFMFQSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEK--PDFYGE 346
L +LKIS+++L L + +FMF+SV +F+ + +P L+ QT KLLPE+ + +
Sbjct: 41 LWLLKISVLVLGLGIVVFMFRSV----EFNSIMPELPHSALNDQTPKLLPEEHLKNLFTY 96
Query: 347 NG--LFPKNQCQCDAFGHQESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXXXXXXXXXX 520
+G LFPKNQC+C+A + SYN +DAY +LPAV RRQAE EHFQ
Sbjct: 97 DGIWLFPKNQCKCEATKQKRSYNFQDAYGHSELPAVKARRQAEFEHFQRREGLPRPPPLL 156
Query: 521 AQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGTLNTLADVPDNVVK 700
AQPNLPFGYP+HGVEVMPLHT+PIPGL+FEGPDAPIYEVTLTASLGTLNTLAD+PD+VV+
Sbjct: 157 AQPNLPFGYPIHGVEVMPLHTVPIPGLQFEGPDAPIYEVTLTASLGTLNTLADIPDSVVQ 216
Query: 701 GRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVTIRYPVMP 880
GRGQK+L I TS+++LLNFILQH+TYTST Y HRVDVVSLESKSSVAKFPVTIR+PV+P
Sbjct: 217 GRGQKRLTISTSNQKLLNFILQHMTYTSTVYQHHRVDVVSLESKSSVAKFPVTIRHPVIP 276
Query: 881 KLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKITDSH 1060
KLYDPGPERKLRDLVTIATKTFLRPHKLMT+LRS+R YYPDLTVI+ADDSKEPLKITD+H
Sbjct: 277 KLYDPGPERKLRDLVTIATKTFLRPHKLMTLLRSIRMYYPDLTVIIADDSKEPLKITDNH 336
Query: 1061 VEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELDVVGG 1240
VEYYTMPFGKGWFAGRNLAISQVTTKY+LWVDDDF+FN+KT+IE LVDVLEKTELDVVGG
Sbjct: 337 VEYYTMPFGKGWFAGRNLAISQVTTKYILWVDDDFLFNNKTKIEVLVDVLEKTELDVVGG 396
Query: 1241 SVIENTFQFKLLLEQGKNGYCLHQQPGFFRPVDGFPDCVVTSGVVNFFLAHTERLQRIGF 1420
SV+ N FQFKLLLE+ +NG CLH++PG FRP+D FP+CVVTSGVVNFFLAHTERLQR+GF
Sbjct: 397 SVLGNVFQFKLLLEKSQNGDCLHRRPGSFRPLDDFPNCVVTSGVVNFFLAHTERLQRVGF 456
Query: 1421 DPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELATLEGNYTSYRANTEAQ 1600
DPRLQRVAHSEFFIDGLGSLLVGSCP V+IGHQ P+ DPELA LE Y+++R NT Q
Sbjct: 457 DPRLQRVAHSEFFIDGLGSLLVGSCPEVVIGHQVRSPMADPELAILEKTYSAFRTNTNDQ 516
Query: 1601 IKFKLALHYFQNYLPCVT 1654
++FKLALHYF+N+L C T
Sbjct: 517 VQFKLALHYFKNHLQCST 534
>ref|XP_538250.2| PREDICTED: similar to Beta-1,4 N-acetylgalactosaminyltransferase
((N-acetylneuraminyl)-galactosylglucosylceramide)
(GM2/GD2 synthase) (GalNAc-T) [Canis familiaris].
Length = 533
Score = 364 bits (935), Expect = e-100
Identities = 202/460 (43%), Positives = 274/460 (59%), Gaps = 25/460 (5%)
Frame = +2
Query: 350 GLFPKNQCQCDAFGHQ---------ESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXXXX 502
GL N C C++ G + +L A+DP++L A + R+ E + F
Sbjct: 73 GLLSGNNCSCESSGGSLHLPFQRQVRAIDLTKAFDPQELLAASASREQEFQAFLSRSQSA 132
Query: 503 XXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAP-IYEVTLTASLGTLNTLAD 679
A N P YP+ GVEV PL +I +PGL + +Y+V LTASLGT N +
Sbjct: 133 ADQLLIASANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQELYQVNLTASLGTWNVAGE 192
Query: 680 VPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVT 859
V + G GQ L + + + LN LQ V Y+S Y + D V ++ A F +
Sbjct: 193 VTGVTLNGEGQPDLTLTSPGLDHLNRQLQLVIYSSQSYQANTADTVRFSTEGHEAVFTIR 252
Query: 860 IRYPVMPKLYDPGP-----ERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVAD 1024
IR+P P+LY PG + + LVTIATKTFLR ++L ++ S+R +YP +TV++AD
Sbjct: 253 IRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYNRLRALIASIRRFYPTVTVVIAD 312
Query: 1025 DSKEPLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVD 1204
DS +P I H+E+Y MPFGKGWFAGRNLA+SQVTTKYVLWVDDDF+F ++TR+E LVD
Sbjct: 313 DSDKPESIRGPHIEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFVFTARTRLERLVD 372
Query: 1205 VLEKTELDVVGGSVIE-----NTFQFKLLLEQGKNGY--CLHQQPGFFRPVDGFPDCVVT 1363
VLE+T LD+VGG+V E T++ L +E G G+ CL Q+ GF + GFP CVVT
Sbjct: 373 VLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGHGNCLRQRRGFHHELVGFPGCVVT 432
Query: 1364 SGVVNFFLAHTERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDP 1543
GVVNFFLA T++++ +GFDPRL RVAH EFF+DGLGSL VGSC V++ H L +
Sbjct: 433 DGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVVVDHASKLKLPWT 492
Query: 1544 ELATLEGNYTSYR---ANTEAQIKFKLALHYFQNYLPCVT 1654
Y YR + E+Q+ K L +F++ L C+T
Sbjct: 493 SRDVGAETYARYRYPGSLDESQVA-KHRLLFFKHRLQCMT 531
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 77,395,236
Number of extensions: 2505449
Number of successful extensions: 9849
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9822
Number of HSP's successfully gapped: 2
Length of query: 558
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 450
Effective length of database: 15,274,216
Effective search space: 6873397200
Effective search space used: 6873397200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013240
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013240
(1676 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695985.1| PREDICTED: beta-1,4-N-acetyl-galactosaminyl ... 763 0.0
Alignment gi|XP_584835.2| PREDICTED: beta-1,4-N-acetyl-galactosaminyl tra... 763 0.0
Alignment gi|NP_001017943.1| beta-1,4 N-acetylgalactosaminyltransferase 1... 364 e-100
>ref|XP_002695985.1| PREDICTED: beta-1,4-N-acetyl-galactosaminyl transferase 2 [Bos
taurus].
Length = 635
Score = 763 bits (1971), Expect = 0.0
Identities = 385/517 (74%), Positives = 431/517 (83%), Gaps = 5/517 (0%)
Frame = +2
Query: 119 PECSEA-AGLRMTSYSPRCLSILKISMVLLVLSVGLFMFQSVFLDTDFSLLNSPIPSPTL 295
PE E + L S S R L ILK+S++ L L + LFMF+SV+L ++FS +P+ P+
Sbjct: 119 PETPEGPSDLLRESVSSRYLWILKMSVLFLALGIVLFMFRSVYLYSEFSSYKAPLLQPSP 178
Query: 296 DAQTLKLLPEK--PDFYGENG--LFPKNQCQCDAFGHQESYNLEDAYDPRDLPAVNLRRQ 463
A LKLLPE+ + +G LFPKNQC+C+A+ H++ YN E+AYD DLPAV +RRQ
Sbjct: 179 AAGMLKLLPEEHIKTLFTHDGIWLFPKNQCKCEAWIHRQRYNFENAYDQTDLPAVKMRRQ 238
Query: 464 AELEHFQXXXXXXXXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTL 643
AE EHFQ AQ NLPFGYPVHGVEVMPLHTIPIPGL+FEGPDAPIY+VTL
Sbjct: 239 AEFEHFQRREGLPRPPPLLAQANLPFGYPVHGVEVMPLHTIPIPGLQFEGPDAPIYKVTL 298
Query: 644 TASLGTLNTLADVPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSL 823
ASLGTLNTLAD PD+VV+GRGQKQL ILTSSR++LNFILQHVTYTSTEY HRVDVVSL
Sbjct: 299 KASLGTLNTLADTPDSVVQGRGQKQLTILTSSRKVLNFILQHVTYTSTEYQHHRVDVVSL 358
Query: 824 ESKSSVAKFPVTIRYPVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPD 1003
ES SSVAKFPVTIR+PVMPKLYDPGPERKLR+LV+IATKTFLRPHKLMTML+S+REYYPD
Sbjct: 359 ESNSSVAKFPVTIRFPVMPKLYDPGPERKLRNLVSIATKTFLRPHKLMTMLQSIREYYPD 418
Query: 1004 LTVIVADDSKEPLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKT 1183
LTVIVADDSKEPLKI DSHVEYYTMP+GKGWFAGRNLAISQVTTKYVLWVDDDF+FN KT
Sbjct: 419 LTVIVADDSKEPLKINDSHVEYYTMPYGKGWFAGRNLAISQVTTKYVLWVDDDFLFNDKT 478
Query: 1184 RIEALVDVLEKTELDVVGGSVIENTFQFKLLLEQGKNGYCLHQQPGFFRPVDGFPDCVVT 1363
+IE LVDVLEKTELDVVGGSV+ N FQFKL LE KNG CLH++ G F P+DGFP+CVVT
Sbjct: 479 KIEVLVDVLEKTELDVVGGSVLGNMFQFKLFLEHSKNGDCLHRRTGSFGPLDGFPNCVVT 538
Query: 1364 SGVVNFFLAHTERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDP 1543
SGVVNFFLAHTERLQR+GFDPRLQRVAHSEFFIDGLGSLLVGSC VIIGHQPH PV DP
Sbjct: 539 SGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFIDGLGSLLVGSCSDVIIGHQPHSPVEDP 598
Query: 1544 ELATLEGNYTSYRANTEAQIKFKLALHYFQNYLPCVT 1654
ELA LE Y YRANT +I+FKLALHYF+N+L C T
Sbjct: 599 ELAALEKTYRIYRANTNDKIQFKLALHYFKNHLQCAT 635
>ref|XP_584835.2| PREDICTED: beta-1,4-N-acetyl-galactosaminyl transferase 2 [Bos
taurus].
Length = 635
Score = 763 bits (1971), Expect = 0.0
Identities = 385/517 (74%), Positives = 431/517 (83%), Gaps = 5/517 (0%)
Frame = +2
Query: 119 PECSEA-AGLRMTSYSPRCLSILKISMVLLVLSVGLFMFQSVFLDTDFSLLNSPIPSPTL 295
PE E + L S S R L ILK+S++ L L + LFMF+SV+L ++FS +P+ P+
Sbjct: 119 PETPEGPSDLLRESVSSRYLWILKMSVLFLALGIVLFMFRSVYLYSEFSSYKAPLLQPSP 178
Query: 296 DAQTLKLLPEK--PDFYGENG--LFPKNQCQCDAFGHQESYNLEDAYDPRDLPAVNLRRQ 463
A LKLLPE+ + +G LFPKNQC+C+A+ H++ YN E+AYD DLPAV +RRQ
Sbjct: 179 AAGMLKLLPEEHIKTLFTHDGIWLFPKNQCKCEAWIHRQRYNFENAYDQTDLPAVKMRRQ 238
Query: 464 AELEHFQXXXXXXXXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTL 643
AE EHFQ AQ NLPFGYPVHGVEVMPLHTIPIPGL+FEGPDAPIY+VTL
Sbjct: 239 AEFEHFQRREGLPRPPPLLAQANLPFGYPVHGVEVMPLHTIPIPGLQFEGPDAPIYKVTL 298
Query: 644 TASLGTLNTLADVPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSL 823
ASLGTLNTLAD PD+VV+GRGQKQL ILTSSR++LNFILQHVTYTSTEY HRVDVVSL
Sbjct: 299 KASLGTLNTLADTPDSVVQGRGQKQLTILTSSRKVLNFILQHVTYTSTEYQHHRVDVVSL 358
Query: 824 ESKSSVAKFPVTIRYPVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPD 1003
ES SSVAKFPVTIR+PVMPKLYDPGPERKLR+LV+IATKTFLRPHKLMTML+S+REYYPD
Sbjct: 359 ESNSSVAKFPVTIRFPVMPKLYDPGPERKLRNLVSIATKTFLRPHKLMTMLQSIREYYPD 418
Query: 1004 LTVIVADDSKEPLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKT 1183
LTVIVADDSKEPLKI DSHVEYYTMP+GKGWFAGRNLAISQVTTKYVLWVDDDF+FN KT
Sbjct: 419 LTVIVADDSKEPLKINDSHVEYYTMPYGKGWFAGRNLAISQVTTKYVLWVDDDFLFNDKT 478
Query: 1184 RIEALVDVLEKTELDVVGGSVIENTFQFKLLLEQGKNGYCLHQQPGFFRPVDGFPDCVVT 1363
+IE LVDVLEKTELDVVGGSV+ N FQFKL LE KNG CLH++ G F P+DGFP+CVVT
Sbjct: 479 KIEVLVDVLEKTELDVVGGSVLGNMFQFKLFLEHSKNGDCLHRRTGSFGPLDGFPNCVVT 538
Query: 1364 SGVVNFFLAHTERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDP 1543
SGVVNFFLAHTERLQR+GFDPRLQRVAHSEFFIDGLGSLLVGSC VIIGHQPH PV DP
Sbjct: 539 SGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFIDGLGSLLVGSCSDVIIGHQPHSPVEDP 598
Query: 1544 ELATLEGNYTSYRANTEAQIKFKLALHYFQNYLPCVT 1654
ELA LE Y YRANT +I+FKLALHYF+N+L C T
Sbjct: 599 ELAALEKTYRIYRANTNDKIQFKLALHYFKNHLQCAT 635
>ref|NP_001017943.1| beta-1,4 N-acetylgalactosaminyltransferase 1 [Bos taurus].
Length = 533
Score = 364 bits (934), Expect = e-100
Identities = 203/460 (44%), Positives = 275/460 (59%), Gaps = 25/460 (5%)
Frame = +2
Query: 350 GLFPKNQCQCDA--------FGHQ-ESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXXXX 502
GL N C C++ F Q ++++ A+DP +L V+ R+ E + F
Sbjct: 73 GLLSANNCSCESSEGSLHLPFQRQVQAFDFTKAFDPEELSTVSASREQEFQAFLSRSQSA 132
Query: 503 XXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAP-IYEVTLTASLGTLNTLAD 679
A N P YP+ GVEV PL +I +PGL + +Y+V LTASLGT + +
Sbjct: 133 ADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLGLQATSGQEVYQVNLTASLGTWDVAGE 192
Query: 680 VPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVT 859
V + G GQ L + + + LN LQ VTY+S Y + D V ++ A F +
Sbjct: 193 VTGVTLIGEGQPDLTLTSLGLDQLNRQLQLVTYSSRSYQANTADTVRFSTEGHEAAFTIR 252
Query: 860 IRYPVMPKLYDPGP-----ERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVAD 1024
IR+P P+LY PG + + LVTIATKTFLR ++L ++ S+R +YP +TV++AD
Sbjct: 253 IRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYNRLRALIASIRRFYPTVTVVIAD 312
Query: 1025 DSKEPLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVD 1204
DS +P I H+E+Y MPFGKGWFAGRNLAISQVTTKYVLWVDDDF+F ++TR+E LVD
Sbjct: 313 DSDKPESIRGPHIEHYLMPFGKGWFAGRNLAISQVTTKYVLWVDDDFVFTARTRLERLVD 372
Query: 1205 VLEKTELDVVGGSVIE-----NTFQFKLLLEQGK--NGYCLHQQPGFFRPVDGFPDCVVT 1363
VLE+T LD+VGG+V E T++ L +E G G CL Q+ GF + GFP CVVT
Sbjct: 373 VLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGRGNCLRQKRGFHHELVGFPGCVVT 432
Query: 1364 SGVVNFFLAHTERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDP 1543
GVVNFFLA T++++ +GFDPRL RVAH EFF+DGLGSL VGSC V++ H L +
Sbjct: 433 DGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLQVGSCSDVVVDHASKLKLPWT 492
Query: 1544 ELATLEGNYTSYR---ANTEAQIKFKLALHYFQNYLPCVT 1654
Y YR + E+Q+ K L +F++ L C+T
Sbjct: 493 SRDAKAETYARYRYPGSLDESQVA-KHRLLFFKHRLQCMT 531
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,822,719
Number of extensions: 2407973
Number of successful extensions: 9685
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9646
Number of HSP's successfully gapped: 3
Length of query: 558
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 451
Effective length of database: 14,140,958
Effective search space: 6377572058
Effective search space used: 6377572058
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013240
(1676 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358132.1| PREDICTED: beta-1,4 N-acetylgalactosaminyltr... 979 0.0
Alignment gi|XP_003126356.2| PREDICTED: beta-1,4 N-acetylgalactosaminyltr... 234 1e-61
>ref|XP_003358132.1| PREDICTED: beta-1,4 N-acetylgalactosaminyltransferase 2 [Sus scrofa].
Length = 502
Score = 979 bits (2531), Expect = 0.0
Identities = 484/502 (96%), Positives = 486/502 (96%)
Frame = +2
Query: 149 MTSYSPRCLSILKISMVLLVLSVGLFMFQSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEK 328
MTSYSPRCLSILKI MVLLVLSVGLFMFQSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEK
Sbjct: 1 MTSYSPRCLSILKILMVLLVLSVGLFMFQSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEK 60
Query: 329 PDFYGENGLFPKNQCQCDAFGHQESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXXXXXX 508
PDFYGENGLFPKNQCQCDAFGHQESYNLEDAYDP+DLPAVNLRRQAELEHFQ
Sbjct: 61 PDFYGENGLFPKNQCQCDAFGHQESYNLEDAYDPQDLPAVNLRRQAELEHFQRREGLPRP 120
Query: 509 XXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGTLNTLADVPD 688
AQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGTLNTLADVPD
Sbjct: 121 PPLLAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGTLNTLADVPD 180
Query: 689 NVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVTIRY 868
NVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVTIRY
Sbjct: 181 NVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVTIRY 240
Query: 869 PVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKI 1048
PVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKI
Sbjct: 241 PVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKI 300
Query: 1049 TDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELD 1228
TDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELD
Sbjct: 301 TDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELD 360
Query: 1229 VVGGSVIENTFQFKLLLEQGKNGYCLHQQPGFFRPVDGFPDCVVTSGVVNFFLAHTERLQ 1408
VVGGSVIENTFQFKLLLEQGKNG CLHQQPGFFRPVDGFPDCVVTSGVVNFFLAHTERLQ
Sbjct: 361 VVGGSVIENTFQFKLLLEQGKNGDCLHQQPGFFRPVDGFPDCVVTSGVVNFFLAHTERLQ 420
Query: 1409 RIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELATLEGNYTSYRAN 1588
RIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELATLEGNYTSYRAN
Sbjct: 421 RIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELATLEGNYTSYRAN 480
Query: 1589 TEAQIKFKLALHYFQNYLPCVT 1654
TEAQIKFKLALHYF+NYL C T
Sbjct: 481 TEAQIKFKLALHYFKNYLQCAT 502
>ref|XP_003126356.2| PREDICTED: beta-1,4 N-acetylgalactosaminyltransferase 1, partial [Sus
scrofa].
Length = 556
Score = 234 bits (597), Expect = 1e-61
Identities = 154/451 (34%), Positives = 214/451 (47%), Gaps = 16/451 (3%)
Frame = +2
Query: 350 GLFPKNQCQCDAFGHQ------------ESYNLEDAYDPRDLPAVNLRRQAELEHFQXXX 493
GL N C C++ G + + A+DP +L + R+ E + F
Sbjct: 156 GLLSSNNCSCESSGGSLHFPFQRQVRQVRAIDFTKAFDPEELRVASASREQEFQAFLSRS 215
Query: 494 XXXXXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAP-IYEVTLTASLGTLNT 670
A P+ GVEV PL +I +PGL + + +Y+V LTASLGT +
Sbjct: 216 QSAADQLLIAXXXXXXXXPLQGVEVQPLRSILVPGLSLQATSSQEVYQVNLTASLGTWDV 275
Query: 671 LADVPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKF 850
+V + G GQ L + + + LN +L + H +D+ S + S
Sbjct: 276 AGEVTGVTLTGEGQPDLTLASPGLDQLNRMLFPQIFAQLAPSCH-LDLSSTQYNISA--- 331
Query: 851 PVTIRYPVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDS 1030
LVTIATKTFLR ++L ++ S+R +YP +TV++ADDS
Sbjct: 332 -----------------------LVTIATKTFLRYNRLRALIASIRRFYPTVTVVIADDS 368
Query: 1031 KEPLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVL 1210
+P +I+ H+E+Y MPFGKGWFAGRNL KYVLWVDDDF+F ++TR+E LVDVL
Sbjct: 369 DKPERISGPHIEHYLMPFGKGWFAGRNLXXXXXXXKYVLWVDDDFVFTARTRLERLVDVL 428
Query: 1211 EKTELDVVGGSVIENTFQFKLLLEQGKNGYCLHQQPGFFRPVDGFPDCVVTSGVVNFFLA 1390
E+T LD+VG +G + G RP G P
Sbjct: 429 ERTPLDLVG---------------KGPRDVGWEKASGGLRPRRGDP---------TESXX 464
Query: 1391 HTERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELATLEGNY 1570
+GFDPRL RVAH EFF+DGLGSL VGSC V++ H L + Y
Sbjct: 465 XXXXXXXVGFDPRLSRVAHLEFFLDGLGSLQVGSCSDVVVDHASKLKLPWTSRDAGAETY 524
Query: 1571 TSYR---ANTEAQIKFKLALHYFQNYLPCVT 1654
YR + E Q+ K L +F++ L C+T
Sbjct: 525 ARYRYPGSLDETQVA-KHRLLFFKHRLQCMT 554
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,715,351
Number of extensions: 1559954
Number of successful extensions: 6268
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6239
Number of HSP's successfully gapped: 3
Length of query: 558
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 454
Effective length of database: 8,754,644
Effective search space: 3974608376
Effective search space used: 3974608376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013240
(1676 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032107.1| beta-1,4 N-acetylgalactosaminyltransferase 2 [M... 671 0.0
Alignment gi|NP_082015.1| beta-1,4 N-acetylgalactosaminyltransferase 1 is... 363 e-100
Alignment gi|NP_032106.1| beta-1,4 N-acetylgalactosaminyltransferase 1 is... 363 e-100
>ref|NP_032107.1| beta-1,4 N-acetylgalactosaminyltransferase 2 [Mus musculus].
Length = 510
Score = 671 bits (1732), Expect = 0.0
Identities = 335/496 (67%), Positives = 390/496 (78%), Gaps = 4/496 (0%)
Frame = +2
Query: 179 ILKISMVLLVLSVGLFMFQSVFLDTDFSLLNSPIPSPTLDAQTLKLLPE----KPDFYGE 346
+LK ++++ L+ FM + V L TDFS P P LKLLPE K Y +
Sbjct: 15 LLKTFVLMVGLATVAFMVRKVSLTTDFSTFKPKFPEPARVDPVLKLLPEEHLRKLFTYSD 74
Query: 347 NGLFPKNQCQCDAFGHQESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXXXXXXXXXXAQ 526
LFPKNQC C++ + Y +DAY+ +DLPAVN RRQAE EHFQ A
Sbjct: 75 IWLFPKNQCDCNSGKLRMKYKFQDAYNQKDLPAVNARRQAEFEHFQRREGLPRPPPLLAP 134
Query: 527 PNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGTLNTLADVPDNVVKGR 706
PNLPFGYPVHGVEVMPLHTI IPGL++EGPDAP+YEV L ASLGTLNTLADVPD+ V+GR
Sbjct: 135 PNLPFGYPVHGVEVMPLHTILIPGLQYEGPDAPVYEVILKASLGTLNTLADVPDDEVQGR 194
Query: 707 GQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVTIRYPVMPKL 886
GQ+QL I T R++LNFILQHVTYTSTEY+LH+VD VS+E +SSVAKFPVTI+ +PKL
Sbjct: 195 GQRQLTISTRHRKVLNFILQHVTYTSTEYYLHKVDTVSMEYESSVAKFPVTIKQQTVPKL 254
Query: 887 YDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKITDSHVE 1066
YDPGPERK+R+LVTIATKTFLRPHKL +L+S+R+YYPD+TVIVADDSKEPL+I D +VE
Sbjct: 255 YDPGPERKIRNLVTIATKTFLRPHKLKILLQSIRKYYPDITVIVADDSKEPLEINDDYVE 314
Query: 1067 YYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELDVVGGSV 1246
YYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDF+F+ KT+IE LVDVLEKTELDVVGGSV
Sbjct: 315 YYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFSDKTKIEVLVDVLEKTELDVVGGSV 374
Query: 1247 IENTFQFKLLLEQGKNGYCLHQQPGFFRPVDGFPDCVVTSGVVNFFLAHTERLQRIGFDP 1426
NT+QF+LL EQ KNG CLHQ+ G F+ +DGFP C +TSGVVNFFLAHTE+L+R+GFDP
Sbjct: 375 QGNTYQFRLLYEQTKNGSCLHQRWGSFQALDGFPGCTLTSGVVNFFLAHTEQLRRVGFDP 434
Query: 1427 RLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELATLEGNYTSYRANTEAQIK 1606
LQRVAH EFFIDGLG LLVGSCP VII HQ P DP+LA LE Y YRANT + I+
Sbjct: 435 ILQRVAHGEFFIDGLGRLLVGSCPGVIINHQVRTPPKDPKLAALEKTYDKYRANTNSVIQ 494
Query: 1607 FKLALHYFQNYLPCVT 1654
FK+AL YF+N+L C T
Sbjct: 495 FKVALQYFKNHLYCST 510
>ref|NP_082015.1| beta-1,4 N-acetylgalactosaminyltransferase 1 isoform 2 [Mus
musculus].
Length = 533
Score = 363 bits (933), Expect = e-100
Identities = 206/463 (44%), Positives = 277/463 (59%), Gaps = 28/463 (6%)
Frame = +2
Query: 350 GLFPKNQCQCDAFGHQ---------ESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXXXX 502
GL +N C C++ G + +L A+D +L AV++ R+ E + F
Sbjct: 73 GLLAQNNCSCESKGGSLPLPFLRQVRAVDLTKAFDAEELRAVSVAREQEYQAFLARSRSL 132
Query: 503 XXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRF-EGPDAPIYEVTLTASLGTLNTLAD 679
A N P YP+ GVEV PL +I +PGL E IY+V L+ASLGT + +
Sbjct: 133 ADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQEASVQEIYQVNLSASLGTWDVAGE 192
Query: 680 VPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVT 859
V + G GQ L + + + LN LQ VTY+S Y + D V +K F +
Sbjct: 193 VTGVTLTGEGQPDLTLASPVLDKLNRQLQLVTYSSRSYQANTADTVRFSTKGHEVAFTIL 252
Query: 860 IRYPVMPKLYDP-----GPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVAD 1024
+R+P P+LY P G E + LVTIATKTFLR +L T++ S+R +YP +T+++AD
Sbjct: 253 VRHPPNPRLYPPSSLPQGAEYNISALVTIATKTFLRYDRLRTLIASIRRFYPTVTIVIAD 312
Query: 1025 DSKEPLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVD 1204
DS +P +I+D HVE+Y MPFGKGWFAGRNLA+SQVTTKYVLWVDDDF+F ++TR+E LVD
Sbjct: 313 DSDKPERISDPHVEHYFMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFVFTARTRLEKLVD 372
Query: 1205 VLEKTELDVVGGSVIE-----NTFQFKLLLEQGKNGY--CLHQQPGFFRPVDGFPDCVVT 1363
VLEKT LD+VGG+V E T++ L +E G G C Q+ GF + GFP CVVT
Sbjct: 373 VLEKTPLDLVGGAVREISGYATTYRQLLSVEPGAPGLGNCFRQKQGFHHELVGFPSCVVT 432
Query: 1364 SGVVNFFLAHTERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGH--QPHLP-- 1531
GVVNFFLA T++++++GFDPRL RVAH EFF+DGLG L VGSC V++ H + LP
Sbjct: 433 DGVVNFFLARTDKVRQVGFDPRLNRVAHLEFFLDGLGFLRVGSCSDVVVDHASKVKLPWT 492
Query: 1532 VMDPELATLEGNYTSYR--ANTEAQIKFKLALHYFQNYLPCVT 1654
DP T Y YR + + K L +F++ L C+T
Sbjct: 493 AKDPGAET----YARYRYPGSLDQSQVAKHRLLFFKHRLQCMT 531
>ref|NP_032106.1| beta-1,4 N-acetylgalactosaminyltransferase 1 isoform 1 [Mus
musculus].
Length = 533
Score = 363 bits (933), Expect = e-100
Identities = 206/463 (44%), Positives = 277/463 (59%), Gaps = 28/463 (6%)
Frame = +2
Query: 350 GLFPKNQCQCDAFGHQ---------ESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXXXX 502
GL +N C C++ G + +L A+D +L AV++ R+ E + F
Sbjct: 73 GLLAQNNCSCESKGGSLPLPFLRQVRAVDLTKAFDAEELRAVSVAREQEYQAFLARSRSL 132
Query: 503 XXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRF-EGPDAPIYEVTLTASLGTLNTLAD 679
A N P YP+ GVEV PL +I +PGL E IY+V L+ASLGT + +
Sbjct: 133 ADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQEASVQEIYQVNLSASLGTWDVAGE 192
Query: 680 VPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVT 859
V + G GQ L + + + LN LQ VTY+S Y + D V +K F +
Sbjct: 193 VTGVTLTGEGQPDLTLASPVLDKLNRQLQLVTYSSRSYQANTADTVRFSTKGHEVAFTIL 252
Query: 860 IRYPVMPKLYDP-----GPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVAD 1024
+R+P P+LY P G E + LVTIATKTFLR +L T++ S+R +YP +T+++AD
Sbjct: 253 VRHPPNPRLYPPSSLPQGAEYNISALVTIATKTFLRYDRLRTLIASIRRFYPTVTIVIAD 312
Query: 1025 DSKEPLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVD 1204
DS +P +I+D HVE+Y MPFGKGWFAGRNLA+SQVTTKYVLWVDDDF+F ++TR+E LVD
Sbjct: 313 DSDKPERISDPHVEHYFMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFVFTARTRLEKLVD 372
Query: 1205 VLEKTELDVVGGSVIE-----NTFQFKLLLEQGKNGY--CLHQQPGFFRPVDGFPDCVVT 1363
VLEKT LD+VGG+V E T++ L +E G G C Q+ GF + GFP CVVT
Sbjct: 373 VLEKTPLDLVGGAVREISGYATTYRQLLSVEPGAPGLGNCFRQKQGFHHELVGFPSCVVT 432
Query: 1364 SGVVNFFLAHTERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGH--QPHLP-- 1531
GVVNFFLA T++++++GFDPRL RVAH EFF+DGLG L VGSC V++ H + LP
Sbjct: 433 DGVVNFFLARTDKVRQVGFDPRLNRVAHLEFFLDGLGFLRVGSCSDVVVDHASKVKLPWT 492
Query: 1532 VMDPELATLEGNYTSYR--ANTEAQIKFKLALHYFQNYLPCVT 1654
DP T Y YR + + K L +F++ L C+T
Sbjct: 493 AKDPGAET----YARYRYPGSLDQSQVAKHRLLFFKHRLQCMT 531
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,672,660
Number of extensions: 2007460
Number of successful extensions: 7665
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7627
Number of HSP's successfully gapped: 3
Length of query: 558
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 452
Effective length of database: 12,433,743
Effective search space: 5620051836
Effective search space used: 5620051836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013240
(1676 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001152859.1| beta-1,4 N-acetylgalactosaminyltransferase 2... 739 0.0
Alignment gi|NP_703147.2| beta-1,4 N-acetylgalactosaminyltransferase 2 is... 736 0.0
Alignment gi|NP_001152860.1| beta-1,4 N-acetylgalactosaminyltransferase 2... 721 0.0
Alignment gi|NP_001469.1| beta-1,4 N-acetylgalactosaminyltransferase 1 [H... 362 e-100
>ref|NP_001152859.1| beta-1,4 N-acetylgalactosaminyltransferase 2 isoform b [Homo
sapiens].
Length = 506
Score = 739 bits (1908), Expect = 0.0
Identities = 368/504 (73%), Positives = 418/504 (82%), Gaps = 4/504 (0%)
Frame = +2
Query: 149 MTSYSPRCLSILKISMVLLVLSVGLFMFQSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEK 328
MTS R L +LKI +++LVL + FMF S+FL FS +PSP Q LKLLPE+
Sbjct: 1 MTSGGSRFLWLLKILVIILVLGIVGFMFGSMFLQAVFSSPKPELPSPAPGVQKLKLLPEE 60
Query: 329 P--DFYGENG--LFPKNQCQCDAFGHQESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXX 496
+ + +G LFPKNQC+C+A Q YN +DAY DLPAV RRQAE EHFQ
Sbjct: 61 RLRNLFSYDGIWLFPKNQCKCEANKEQGGYNFQDAYGQSDLPAVKARRQAEFEHFQRREG 120
Query: 497 XXXXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGTLNTLA 676
QPNLPFGYPVHGVEVMPLHT+PIPGL+FEGPDAP+YEVTLTASLGTLNTLA
Sbjct: 121 LPRPLPLLVQPNLPFGYPVHGVEVMPLHTVPIPGLQFEGPDAPVYEVTLTASLGTLNTLA 180
Query: 677 DVPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPV 856
DVPD+VV+GRGQKQL I TS R+LL FILQHVTYTST Y +VD+VSLES+SSVAKFPV
Sbjct: 181 DVPDSVVQGRGQKQLIISTSDRKLLKFILQHVTYTSTGYQHQKVDIVSLESRSSVAKFPV 240
Query: 857 TIRYPVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKE 1036
TIR+PV+PKLYDPGPERKLR+LVTIATKTFLRPHKLM MLRS+REYYPDLTVIVADDS++
Sbjct: 241 TIRHPVIPKLYDPGPERKLRNLVTIATKTFLRPHKLMIMLRSIREYYPDLTVIVADDSQK 300
Query: 1037 PLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEK 1216
PL+I D+HVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDF+FN +T+IE LVDVLEK
Sbjct: 301 PLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFNEETKIEVLVDVLEK 360
Query: 1217 TELDVVGGSVIENTFQFKLLLEQGKNGYCLHQQPGFFRPVDGFPDCVVTSGVVNFFLAHT 1396
TELDVVGGSV+ N FQFKLLLEQ +NG CLH++ GFF+P+DGFP CVVTSGVVNFFLAHT
Sbjct: 361 TELDVVGGSVLGNVFQFKLLLEQSENGACLHKRMGFFQPLDGFPSCVVTSGVVNFFLAHT 420
Query: 1397 ERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELATLEGNYTS 1576
ERLQR+GFDPRLQRVAHSEFFIDGLG+LLVGSCP VIIGHQ PV+D ELA LE Y +
Sbjct: 421 ERLQRVGFDPRLQRVAHSEFFIDGLGTLLVGSCPEVIIGHQSRSPVVDSELAALEKTYNT 480
Query: 1577 YRANTEAQIKFKLALHYFQNYLPC 1648
YR+NT +++FKLALHYF+N+L C
Sbjct: 481 YRSNTLTRVQFKLALHYFKNHLQC 504
>ref|NP_703147.2| beta-1,4 N-acetylgalactosaminyltransferase 2 isoform a [Homo
sapiens].
Length = 566
Score = 736 bits (1900), Expect = 0.0
Identities = 368/509 (72%), Positives = 418/509 (82%), Gaps = 4/509 (0%)
Frame = +2
Query: 134 AAGLRMTSYSPRCLSILKISMVLLVLSVGLFMFQSVFLDTDFSLLNSPIPSPTLDAQTLK 313
AA R R L +LKI +++LVL + FMF S+FL FS +PSP Q LK
Sbjct: 56 AAHGRSRRQGSRFLWLLKILVIILVLGIVGFMFGSMFLQAVFSSPKPELPSPAPGVQKLK 115
Query: 314 LLPEKP--DFYGENG--LFPKNQCQCDAFGHQESYNLEDAYDPRDLPAVNLRRQAELEHF 481
LLPE+ + + +G LFPKNQC+C+A Q YN +DAY DLPAV RRQAE EHF
Sbjct: 116 LLPEERLRNLFSYDGIWLFPKNQCKCEANKEQGGYNFQDAYGQSDLPAVKARRQAEFEHF 175
Query: 482 QXXXXXXXXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGT 661
Q QPNLPFGYPVHGVEVMPLHT+PIPGL+FEGPDAP+YEVTLTASLGT
Sbjct: 176 QRREGLPRPLPLLVQPNLPFGYPVHGVEVMPLHTVPIPGLQFEGPDAPVYEVTLTASLGT 235
Query: 662 LNTLADVPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSV 841
LNTLADVPD+VV+GRGQKQL I TS R+LL FILQHVTYTST Y +VD+VSLES+SSV
Sbjct: 236 LNTLADVPDSVVQGRGQKQLIISTSDRKLLKFILQHVTYTSTGYQHQKVDIVSLESRSSV 295
Query: 842 AKFPVTIRYPVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVA 1021
AKFPVTIR+PV+PKLYDPGPERKLR+LVTIATKTFLRPHKLM MLRS+REYYPDLTVIVA
Sbjct: 296 AKFPVTIRHPVIPKLYDPGPERKLRNLVTIATKTFLRPHKLMIMLRSIREYYPDLTVIVA 355
Query: 1022 DDSKEPLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALV 1201
DDS++PL+I D+HVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDF+FN +T+IE LV
Sbjct: 356 DDSQKPLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFNEETKIEVLV 415
Query: 1202 DVLEKTELDVVGGSVIENTFQFKLLLEQGKNGYCLHQQPGFFRPVDGFPDCVVTSGVVNF 1381
DVLEKTELDVVGGSV+ N FQFKLLLEQ +NG CLH++ GFF+P+DGFP CVVTSGVVNF
Sbjct: 416 DVLEKTELDVVGGSVLGNVFQFKLLLEQSENGACLHKRMGFFQPLDGFPSCVVTSGVVNF 475
Query: 1382 FLAHTERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELATLE 1561
FLAHTERLQR+GFDPRLQRVAHSEFFIDGLG+LLVGSCP VIIGHQ PV+D ELA LE
Sbjct: 476 FLAHTERLQRVGFDPRLQRVAHSEFFIDGLGTLLVGSCPEVIIGHQSRSPVVDSELAALE 535
Query: 1562 GNYTSYRANTEAQIKFKLALHYFQNYLPC 1648
Y +YR+NT +++FKLALHYF+N+L C
Sbjct: 536 KTYNTYRSNTLTRVQFKLALHYFKNHLQC 564
>ref|NP_001152860.1| beta-1,4 N-acetylgalactosaminyltransferase 2 isoform c [Homo
sapiens].
Length = 480
Score = 721 bits (1861), Expect = 0.0
Identities = 356/478 (74%), Positives = 401/478 (83%), Gaps = 4/478 (0%)
Frame = +2
Query: 227 MFQSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEKP--DFYGENG--LFPKNQCQCDAFGH 394
MF S+FL FS +PSP Q LKLLPE+ + + +G LFPKNQC+C+A
Sbjct: 1 MFGSMFLQAVFSSPKPELPSPAPGVQKLKLLPEERLRNLFSYDGIWLFPKNQCKCEANKE 60
Query: 395 QESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXXXXXXXXXXAQPNLPFGYPVHGVEVMP 574
Q YN +DAY DLPAV RRQAE EHFQ QPNLPFGYPVHGVEVMP
Sbjct: 61 QGGYNFQDAYGQSDLPAVKARRQAEFEHFQRREGLPRPLPLLVQPNLPFGYPVHGVEVMP 120
Query: 575 LHTIPIPGLRFEGPDAPIYEVTLTASLGTLNTLADVPDNVVKGRGQKQLNILTSSRELLN 754
LHT+PIPGL+FEGPDAP+YEVTLTASLGTLNTLADVPD+VV+GRGQKQL I TS R+LL
Sbjct: 121 LHTVPIPGLQFEGPDAPVYEVTLTASLGTLNTLADVPDSVVQGRGQKQLIISTSDRKLLK 180
Query: 755 FILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVTIRYPVMPKLYDPGPERKLRDLVTIA 934
FILQHVTYTST Y +VD+VSLES+SSVAKFPVTIR+PV+PKLYDPGPERKLR+LVTIA
Sbjct: 181 FILQHVTYTSTGYQHQKVDIVSLESRSSVAKFPVTIRHPVIPKLYDPGPERKLRNLVTIA 240
Query: 935 TKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKITDSHVEYYTMPFGKGWFAGRNL 1114
TKTFLRPHKLM MLRS+REYYPDLTVIVADDS++PL+I D+HVEYYTMPFGKGWFAGRNL
Sbjct: 241 TKTFLRPHKLMIMLRSIREYYPDLTVIVADDSQKPLEIKDNHVEYYTMPFGKGWFAGRNL 300
Query: 1115 AISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELDVVGGSVIENTFQFKLLLEQGKN 1294
AISQVTTKYVLWVDDDF+FN +T+IE LVDVLEKTELDVVGGSV+ N FQFKLLLEQ +N
Sbjct: 301 AISQVTTKYVLWVDDDFLFNEETKIEVLVDVLEKTELDVVGGSVLGNVFQFKLLLEQSEN 360
Query: 1295 GYCLHQQPGFFRPVDGFPDCVVTSGVVNFFLAHTERLQRIGFDPRLQRVAHSEFFIDGLG 1474
G CLH++ GFF+P+DGFP CVVTSGVVNFFLAHTERLQR+GFDPRLQRVAHSEFFIDGLG
Sbjct: 361 GACLHKRMGFFQPLDGFPSCVVTSGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFIDGLG 420
Query: 1475 SLLVGSCPHVIIGHQPHLPVMDPELATLEGNYTSYRANTEAQIKFKLALHYFQNYLPC 1648
+LLVGSCP VIIGHQ PV+D ELA LE Y +YR+NT +++FKLALHYF+N+L C
Sbjct: 421 TLLVGSCPEVIIGHQSRSPVVDSELAALEKTYNTYRSNTLTRVQFKLALHYFKNHLQC 478
>ref|NP_001469.1| beta-1,4 N-acetylgalactosaminyltransferase 1 [Homo sapiens].
Length = 533
Score = 362 bits (928), Expect = e-100
Identities = 199/459 (43%), Positives = 272/459 (59%), Gaps = 24/459 (5%)
Frame = +2
Query: 350 GLFPKNQCQCDAFG---------HQESYNLEDAYDPRDLPAVNLRRQAELEHFQXXXXXX 502
GL N C C++ G + +L A+DP +L A + R+ E + F
Sbjct: 73 GLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQEFQAFLSRSQSP 132
Query: 503 XXXXXXAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAP-IYEVTLTASLGTLNTLAD 679
A N P YP+ GVEV PL +I +PGL + +Y+V LTASLGT + +
Sbjct: 133 ADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNLTASLGTWDVAGE 192
Query: 680 VPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVT 859
V + G GQ L +++ + LN LQ VTY+S Y + D V ++ A F +
Sbjct: 193 VTGVTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRFSTEGHEAAFTIR 252
Query: 860 IRYPVMPKLYDPGP-----ERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVAD 1024
IR+P P+LY PG + + LVTIATKTFLR +L ++ S+R +YP +TV++AD
Sbjct: 253 IRHPPNPRLYPPGSLPQGAQYNISALVTIATKTFLRYDRLRALITSIRRFYPTVTVVIAD 312
Query: 1025 DSKEPLKITDSHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVD 1204
DS +P +++ +VE+Y MPFGKGWFAGRNLA+SQVTTKYVLWVDDDF+F ++TR+E LVD
Sbjct: 313 DSDKPERVSGPYVEHYLMPFGKGWFAGRNLAVSQVTTKYVLWVDDDFVFTARTRLERLVD 372
Query: 1205 VLEKTELDVVGGSVIE-----NTFQFKLLLEQGKNGY--CLHQQPGFFRPVDGFPDCVVT 1363
VLE+T LD+VGG+V E T++ L +E G G CL Q+ GF + GFP CVVT
Sbjct: 373 VLERTPLDLVGGAVREISGFATTYRQLLSVEPGAPGLGNCLRQRRGFHHELVGFPGCVVT 432
Query: 1364 SGVVNFFLAHTERLQRIGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDP 1543
GVVNFFLA T++++ +GFDPRL RVAH EFF+DGLGSL VGSC V++ H L +
Sbjct: 433 DGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGSCSDVVVDHASKLKLPWT 492
Query: 1544 ELATLEGNYTSYR--ANTEAQIKFKLALHYFQNYLPCVT 1654
Y YR + + K L +F++ L C+T
Sbjct: 493 SRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMT 531
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,650,089
Number of extensions: 2431856
Number of successful extensions: 9787
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9756
Number of HSP's successfully gapped: 4
Length of query: 558
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 450
Effective length of database: 14,737,052
Effective search space: 6631673400
Effective search space used: 6631673400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013240
(1676 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 422 e-115
>Sscrofa_Chr12
|| Length = 63588571
Score = 422 bits (213), Expect = e-115
Identities = 219/221 (99%)
Strand = Plus / Minus
Query: 1231 ggtaggtggcagcgtgattgaaaacacattccagttcaagctgttgctggagcaggggaa 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25314789 ggtaggtggcagcgtgattgaaaacacattccagttcaagctgttgctggagcaggggaa 25314730
Query: 1291 gaatggctactgtctccaccagcagccaggatttttccggcccgtggatggcttccccga 1350
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25314729 gaatggcgactgtctccaccagcagccaggatttttccggcccgtggatggcttccccga 25314670
Query: 1351 ctgcgtggtgaccagtggtgttgtcaacttcttcctggctcacacagagcgactccaaag 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25314669 ctgcgtggtgaccagtggtgttgtcaacttcttcctggctcacacagagcgactccaaag 25314610
Query: 1411 aattggcttcgacccccggctgcagcgagtggcgcactcag 1451
||||||||||||||||||||||||||||||||| |||||||
Sbjct: 25314609 aattggcttcgacccccggctgcagcgagtggctcactcag 25314569
Score = 404 bits (204), Expect = e-110
Identities = 222/228 (97%)
Strand = Plus / Minus
Query: 1449 cagagttctttattgatgggctcgggagcctgctcgtggggtcctgcccacacgtgatca 1508
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 25313752 cagagttctttattgatgggctcgggagcctgctcgtggggtcctgcccacatgtgatca 25313693
Query: 1509 taggtcaccagccccatttaccagtgatggacccagagctggccaccctggaggggaact 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25313692 taggtcaccagccccatttaccagtgatggacccagagctggccaccctggaggggaact 25313633
Query: 1569 acaccagttatcgggccaacaccgaagcccagatcaaattcaagttggctctccactact 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25313632 acaccagttatcgggccaacaccgaagcccagatcaaattcaagttggctctccactact 25313573
Query: 1629 ttcagaactatctcccatgtgtcacctaaggtatccgggcattggaaa 1676
| |||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 25313572 tcaagaactatctccaatgtgccacctaaggtatctgggcattggaaa 25313525
Score = 383 bits (193), Expect = e-103
Identities = 193/193 (100%)
Strand = Plus / Minus
Query: 899 ccagagaggaagctccgagacctggtgaccattgccaccaaaaccttcctccgtccccac 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25321483 ccagagaggaagctccgagacctggtgaccattgccaccaaaaccttcctccgtccccac 25321424
Query: 959 aagctcatgaccatgctccggagtgttcgtgagtactacccagacctgacggtgatcgtg 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25321423 aagctcatgaccatgctccggagtgttcgtgagtactacccagacctgacggtgatcgtg 25321364
Query: 1019 gccgatgacagcaaggagcccctgaaaatcactgacagccacgtggagtattacaccatg 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25321363 gccgatgacagcaaggagcccctgaaaatcactgacagccacgtggagtattacaccatg 25321304
Query: 1079 ccatttgggaagg 1091
|||||||||||||
Sbjct: 25321303 ccatttgggaagg 25321291
Score = 377 bits (190), Expect = e-101
Identities = 193/194 (99%)
Strand = Plus / Minus
Query: 159 acagccctagatgtctgtcgatcctcaagatatcgatggtgcttttggtcctgagcgttg 218
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 25332782 acagccctagatgtctgtcgatcctcaagatattgatggtgcttttggtcctgagcgttg 25332723
Query: 219 gactctttatgttccaaagcgtgttcctcgatacagacttcagtctcctcaactcaccca 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25332722 gactctttatgttccaaagcgtgttcctcgatacagacttcagtctcctcaactcaccca 25332663
Query: 279 tcccgtcccccaccctggatgcgcagacgctgaagcttctacctgagaaacccgatttct 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25332662 tcccgtcccccaccctggatgcgcagacgctgaagcttctacctgagaaacccgatttct 25332603
Query: 339 acggtgaaaacggg 352
||||||||||||||
Sbjct: 25332602 acggtgaaaacggg 25332589
Score = 363 bits (183), Expect = 2e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 633 aggtcaccctgacagcttctctggggacactgaacacccttgctgacgtcccagacaatg 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25326327 aggtcaccctgacagcttctctggggacactgaacacccttgctgacgtcccagacaatg 25326268
Query: 693 tggtgaagggcagaggccagaagcagctgaacattttgaccagtagccgggagcttttga 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25326267 tggtgaagggcagaggccagaagcagctgaacattttgaccagtagccgggagcttttga 25326208
Query: 753 atttcatcctccagcatgtgacatacacgagcacagagtaccacctccacagagtggatg 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25326207 atttcatcctccagcatgtgacatacacgagcacagagtaccacctccacagagtggatg 25326148
Query: 813 tgg 815
|||
Sbjct: 25326147 tgg 25326145
Score = 313 bits (158), Expect = 2e-82
Identities = 161/162 (99%)
Strand = Plus / Minus
Query: 1 ggtgggcgggggttggtggtgacgtgggcgggtccgacccaagctctcgcggtttaccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25352268 ggtgggcgggggttggtggtgacgtgggcgggtccgacccaagctctcgcggtttaccag 25352209
Query: 61 gaagaatttgccggggttggtgctagggctgtccaatccgcggagtggcaccaccagccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25352208 gaagaatttgccggggttggtgctagggctgtccaatccgcggagtggcaccaccagccc 25352149
Query: 121 agaatgttccgaggcggcgggattaaggatgacttcgtacag 162
||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 25352148 agaatgtcccgaggcggcgggattaaggatgacttcgtacag 25352107
Score = 305 bits (154), Expect = 4e-80
Identities = 160/162 (98%)
Strand = Plus / Plus
Query: 1 ggtgggcgggggttggtggtgacgtgggcgggtccgacccaagctctcgcggtttaccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25237028 ggtgggcgggggttggtggtgacgtgggcgggtccgacccaagctctcgcggtttaccag 25237087
Query: 61 gaagaatttgccggggttggtgctagggctgtccaatccgcggagtggcaccaccagccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25237088 gaagaatttgccggggttggtgctagggctgtccaatccgcggagtggcaccaccagccc 25237147
Query: 121 agaatgttccgaggcggcgggattaaggatgacttcgtacag 162
||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 25237148 agaatgtcccgaggcgacgggattaaggatgacttcgtacag 25237189
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 1089 agggctggtttgctggcaggaacctggccatatctcaggtcaccaccaaatatgtgctct 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25320569 agggctggtttgctggcaggaacctggccatatctcaggtcaccaccaaatatgtgctct 25320510
Query: 1149 gggtggacgatgacttcatcttcaacagcaagaccaggatcgaggcgctggtggacgtcc 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25320509 gggtggacgatgacttcatcttcaacagcaagaccaggatcgaggcgctggtggacgtcc 25320450
Query: 1209 tagagaaaacggaactggacgtggta 1234
||||||||||||||||||||||||||
Sbjct: 25320449 tagagaaaacggaactggacgtggta 25320424
Score = 260 bits (131), Expect = 2e-66
Identities = 137/139 (98%)
Strand = Plus / Minus
Query: 351 ggctgttcccgaaaaaccagtgccaatgtgacgccttcgggcatcaggaaagctataact 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25330869 ggctgttcccgaaaaaccagtgccaatgtgacgccttcgggcatcaggaaagctataact 25330810
Query: 411 tggaggatgcctacgacccgcgtgacctccccgcagtgaacctgaggagacaggctgagc 470
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 25330809 tggaggatgcctacgacccgcaagacctccccgcagtgaacctgaggagacaggctgagc 25330750
Query: 471 tcgaacactttcagaggag 489
|||||||||||||||||||
Sbjct: 25330749 tcgaacactttcagaggag 25330731
Score = 218 bits (110), Expect = 8e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 488 agagaagggctccctcgcccaccgcccctgctggctcagcccaacctcccctttgggtac 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25328724 agagaagggctccctcgcccaccgcccctgctggctcagcccaacctcccctttgggtac 25328665
Query: 548 ccggtccacggggtggaagtgatgcctctacacaccatccccatcccagg 597
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25328664 ccggtccacggggtggaagtgatgcctctacacaccatccccatcccagg 25328615
Score = 167 bits (84), Expect = 2e-38
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 815 gtgagtctggagtccaagtcctcagtggccaagtttccggtgaccatccgctatcctgtc 874
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 25324070 gtgagtctggagtccaagtcctcagtggccaagtttccagtgaccatccgctatcctgtc 25324011
Query: 875 atgcccaagttatatgaccctggaccag 902
||||||||||||||||||||||||||||
Sbjct: 25324010 atgcccaagttatatgaccctggaccag 25323983
Score = 85.7 bits (43), Expect = 7e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 593 ccaggcctccggtttgaaggacctgatgctcccatctatgagg 635
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25327149 ccaggcctccggtttgaaggacctgatgctcccatctatgagg 25327107
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,443,520
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 12
Length of query: 1676
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1654
Effective length of database: 2,808,408,574
Effective search space: 4645107781396
Effective search space used: 4645107781396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)