Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013244
(1842 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533748.2| PREDICTED: similar to Transcriptional adapter 3... 773 0.0
Alignment gi|XP_861667.1| PREDICTED: similar to Transcriptional adapter 3... 723 0.0
Alignment gi|XP_861609.1| PREDICTED: similar to transcriptional adaptor 3... 457 e-128
Alignment gi|XP_861640.1| PREDICTED: similar to Transcriptional adapter 3... 404 e-112
Alignment gi|XP_853193.1| PREDICTED: similar to transcriptional adaptor 3... 357 2e-98
Alignment gi|XP_850863.1| PREDICTED: similar to transcriptional adaptor 3... 268 1e-71
Alignment gi|XP_850871.1| PREDICTED: similar to transcriptional adaptor 3... 194 2e-49
>ref|XP_533748.2| PREDICTED: similar to Transcriptional adapter 3-like (ADA3-like
protein) (ADA3 homolog) (hADA3) isoform 1 [Canis
familiaris].
Length = 432
Score = 773 bits (1997), Expect = 0.0
Identities = 392/432 (90%), Positives = 393/432 (90%)
Frame = +1
Query: 256 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIXXXXXXXXXXXXXXXXXXXX 435
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGI
Sbjct: 1 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR 60
Query: 436 XXXXXAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEXXXXXXXXXXXXX 615
AETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLE
Sbjct: 61 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR 120
Query: 616 XKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 795
KSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
Sbjct: 121 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 180
Query: 796 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDTKDVDAL 975
EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAA+ADKKKGLMGPLTELDTKDVDAL
Sbjct: 181 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL 240
Query: 976 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 1155
LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
Sbjct: 241 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 300
Query: 1156 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 1335
NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
Sbjct: 301 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 360
Query: 1336 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 1515
RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
Sbjct: 361 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 420
Query: 1516 KERESILKLLDG 1551
KERESILKLLDG
Sbjct: 421 KERESILKLLDG 432
>ref|XP_861667.1| PREDICTED: similar to Transcriptional adapter 3-like (ADA3-like
protein) (ADA3 homolog) (hADA3) isoform 5 [Canis
familiaris].
Length = 413
Score = 723 bits (1867), Expect = 0.0
Identities = 373/432 (86%), Positives = 374/432 (86%)
Frame = +1
Query: 256 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIXXXXXXXXXXXXXXXXXXXX 435
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGI
Sbjct: 1 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR 60
Query: 436 XXXXXAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEXXXXXXXXXXXXX 615
AETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLE
Sbjct: 61 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR 120
Query: 616 XKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 795
KSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEE
Sbjct: 121 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEE----------- 169
Query: 796 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDTKDVDAL 975
IPPLGKHYSQRWAQEDLLEEQKDGARAAA+ADKKKGLMGPLTELDTKDVDAL
Sbjct: 170 --------IPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL 221
Query: 976 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 1155
LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
Sbjct: 222 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 281
Query: 1156 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 1335
NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
Sbjct: 282 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 341
Query: 1336 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 1515
RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
Sbjct: 342 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 401
Query: 1516 KERESILKLLDG 1551
KERESILKLLDG
Sbjct: 402 KERESILKLLDG 413
>ref|XP_861609.1| PREDICTED: similar to transcriptional adaptor 3-like isoform 3 [Canis
familiaris].
Length = 370
Score = 457 bits (1176), Expect = e-128
Identities = 262/438 (59%), Positives = 279/438 (63%), Gaps = 6/438 (1%)
Frame = +1
Query: 256 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIXXXXXXXXXXXXXXXXXXXX 435
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGI
Sbjct: 1 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR 60
Query: 436 XXXXXAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEXXXXXXXXXXXXX 615
AETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLE
Sbjct: 61 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR 120
Query: 616 XKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 795
KSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
Sbjct: 121 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 180
Query: 796 EDEAEHYK------IPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDT 957
EDEAEHYK L + Q +E+++ +D + M+ K+ G G T
Sbjct: 181 EDEAEHYKPEDGCPFGALTQRLLQALVEENIISPMED-SPIPDMSGKESGADGAST---- 235
Query: 958 KDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADG 1137
S +P +L R+ + L+ + ++ ED P D
Sbjct: 236 ---------SPRNQNKPFSVPHTKSLESRIKEELIAQGLLE-SEDRPAED---------- 275
Query: 1138 ASTSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELK 1317
SEDEVLAELRKRQAELK
Sbjct: 276 -------------------------------------------SEDEVLAELRKRQAELK 292
Query: 1318 ALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKD 1497
ALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKD
Sbjct: 293 ALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKD 352
Query: 1498 QAWKTLKERESILKLLDG 1551
QAWKTLKERESILKLLDG
Sbjct: 353 QAWKTLKERESILKLLDG 370
>ref|XP_861640.1| PREDICTED: similar to Transcriptional adapter 3-like (ADA3-like
protein) (ADA3 homolog) (hADA3) isoform 4 [Canis
familiaris].
Length = 207
Score = 404 bits (1039), Expect = e-112
Identities = 207/207 (100%), Positives = 207/207 (100%)
Frame = +1
Query: 931 MGPLTELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDM 1110
MGPLTELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDM
Sbjct: 1 MGPLTELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDM 60
Query: 1111 SGKESGADGASTSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAE 1290
SGKESGADGASTSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAE
Sbjct: 61 SGKESGADGASTSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAE 120
Query: 1291 LRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKK 1470
LRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKK
Sbjct: 121 LRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKK 180
Query: 1471 RTPTKKEKDQAWKTLKERESILKLLDG 1551
RTPTKKEKDQAWKTLKERESILKLLDG
Sbjct: 181 RTPTKKEKDQAWKTLKERESILKLLDG 207
>ref|XP_853193.1| PREDICTED: similar to transcriptional adaptor 3-like isoform b [Canis
familiaris].
Length = 202
Score = 357 bits (916), Expect = 2e-98
Identities = 175/194 (90%), Positives = 186/194 (95%)
Frame = +1
Query: 712 RFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDG 891
RFWASVEPYCADITSE+V TLE+LLKPPEDEAEHYK+PPL KHYSQRWAQ+DLLEEQKDG
Sbjct: 3 RFWASVEPYCADITSEKVCTLEKLLKPPEDEAEHYKLPPLRKHYSQRWAQQDLLEEQKDG 62
Query: 892 ARAAAMADKKKGLMGPLTELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEEN 1071
A AAA+ DKKKGLMGPL++L TKD+DALLKKSEAQHEQPEDGCPFGAL QRLLQALV+EN
Sbjct: 63 AWAAAVTDKKKGLMGPLSQLHTKDLDALLKKSEAQHEQPEDGCPFGALMQRLLQALVKEN 122
Query: 1072 IISPMEDSPIPDMSGKESGADGASTSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESED 1251
I SPMEDSPIPDMSGKESGADGASTSP NQNKPFSVPHTKSLESRIKEELIAQGLLESED
Sbjct: 123 ITSPMEDSPIPDMSGKESGADGASTSPHNQNKPFSVPHTKSLESRIKEELIAQGLLESED 182
Query: 1252 RPAEDSEDEVLAEL 1293
RPAEDSED++LAEL
Sbjct: 183 RPAEDSEDDILAEL 196
>ref|XP_850863.1| PREDICTED: similar to transcriptional adaptor 3-like [Canis
familiaris].
Length = 156
Score = 268 bits (685), Expect = 1e-71
Identities = 137/156 (87%), Positives = 146/156 (93%)
Frame = +1
Query: 1084 MEDSPIPDMSGKESGADGASTSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAE 1263
MEDSPIPDMSGKESGA+GAST+P NQNKPFSVPHTKSLE IKEELIA+GLLESEDRPAE
Sbjct: 1 MEDSPIPDMSGKESGANGASTAPCNQNKPFSVPHTKSLERHIKEELIARGLLESEDRPAE 60
Query: 1264 DSEDEVLAELRKRQAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFR 1443
DS+DEVLA+L K Q ELK LSAHNRTKKH+L+RLAKEEVS+QELRQRV MADNEVMDAF
Sbjct: 61 DSKDEVLAKLHKLQTELKVLSAHNRTKKHNLMRLAKEEVSQQELRQRVHMADNEVMDAFW 120
Query: 1444 KIMAARQKKRTPTKKEKDQAWKTLKERESILKLLDG 1551
KIMAARQKK+TPTKKEKDQAWKTLKE ESILKLLDG
Sbjct: 121 KIMAARQKKQTPTKKEKDQAWKTLKEPESILKLLDG 156
>ref|XP_850871.1| PREDICTED: similar to transcriptional adaptor 3-like isoform b [Canis
familiaris].
Length = 127
Score = 194 bits (493), Expect = 2e-49
Identities = 104/158 (65%), Positives = 108/158 (68%)
Frame = +1
Query: 529 LGAPPKHGKPKKQKLEXXXXXXXXXXXXXXKSKNLQPKIQEYEFTDDPIDVPRIPKNDAP 708
L PPKHGKPKKQKLE KS+NLQPKIQEYEFTDDPID+PRIP+NDAP
Sbjct: 3 LELPPKHGKPKKQKLEGKVGHGLGPGPRHPKSRNLQPKIQEYEFTDDPIDMPRIPRNDAP 62
Query: 709 NRFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIPPLGKHYSQRWAQEDLLEEQKD 888
NR WASVEPYCADITSEE EDLLEEQKD
Sbjct: 63 NRVWASVEPYCADITSEE---------------------------------EDLLEEQKD 89
Query: 889 GARAAAMADKKKGLMGPLTELDTKDVDALLKKSEAQHE 1002
GARAAA+ADKKKGLMGPLTELDTKDVDALLKKSEAQHE
Sbjct: 90 GARAAAVADKKKGLMGPLTELDTKDVDALLKKSEAQHE 127
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,350,787
Number of extensions: 2214924
Number of successful extensions: 10655
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10530
Number of HSP's successfully gapped: 9
Length of query: 614
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 505
Effective length of database: 15,240,880
Effective search space: 7696644400
Effective search space used: 7696644400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013244
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013244
(1842 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019682.1| transcriptional adapter 3 [Bos taurus]. 773 0.0
>ref|NP_001019682.1| transcriptional adapter 3 [Bos taurus].
Length = 432
Score = 773 bits (1997), Expect = 0.0
Identities = 392/432 (90%), Positives = 393/432 (90%)
Frame = +1
Query: 256 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIXXXXXXXXXXXXXXXXXXXX 435
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGI
Sbjct: 1 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR 60
Query: 436 XXXXXAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEXXXXXXXXXXXXX 615
AETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLE
Sbjct: 61 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR 120
Query: 616 XKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 795
KSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
Sbjct: 121 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 180
Query: 796 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDTKDVDAL 975
EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAA+ADKKKGLMGPLTELDTKDVDAL
Sbjct: 181 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL 240
Query: 976 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 1155
LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
Sbjct: 241 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 300
Query: 1156 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 1335
NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
Sbjct: 301 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 360
Query: 1336 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 1515
RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
Sbjct: 361 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 420
Query: 1516 KERESILKLLDG 1551
KERESILKLLDG
Sbjct: 421 KERESILKLLDG 432
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,240,305
Number of extensions: 2144506
Number of successful extensions: 10215
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10131
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 506
Effective length of database: 14,107,870
Effective search space: 7138582220
Effective search space used: 7138582220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013244
(1842 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193465.1| transcriptional adaptor 3 [Sus scrofa]. 775 0.0
>ref|NP_001193465.1| transcriptional adaptor 3 [Sus scrofa].
Length = 432
Score = 775 bits (2001), Expect = 0.0
Identities = 393/432 (90%), Positives = 393/432 (90%)
Frame = +1
Query: 256 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIXXXXXXXXXXXXXXXXXXXX 435
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGI
Sbjct: 1 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR 60
Query: 436 XXXXXAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEXXXXXXXXXXXXX 615
AETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLE
Sbjct: 61 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR 120
Query: 616 XKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 795
KSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
Sbjct: 121 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 180
Query: 796 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDTKDVDAL 975
EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDTKDVDAL
Sbjct: 181 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDTKDVDAL 240
Query: 976 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 1155
LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
Sbjct: 241 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 300
Query: 1156 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 1335
NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
Sbjct: 301 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 360
Query: 1336 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 1515
RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
Sbjct: 361 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 420
Query: 1516 KERESILKLLDG 1551
KERESILKLLDG
Sbjct: 421 KERESILKLLDG 432
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,718,482
Number of extensions: 1390571
Number of successful extensions: 6533
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6477
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 509
Effective length of database: 8,729,747
Effective search space: 4443441223
Effective search space used: 4443441223
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013244
(1842 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598693.1| transcriptional adapter 3 [Mus musculus]. 771 0.0
>ref|NP_598693.1| transcriptional adapter 3 [Mus musculus].
Length = 432
Score = 771 bits (1990), Expect = 0.0
Identities = 390/432 (90%), Positives = 393/432 (90%)
Frame = +1
Query: 256 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIXXXXXXXXXXXXXXXXXXXX 435
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGI
Sbjct: 1 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR 60
Query: 436 XXXXXAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEXXXXXXXXXXXXX 615
AETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLE
Sbjct: 61 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKTGHGPGPGPGR 120
Query: 616 XKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 795
KSKN+QPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
Sbjct: 121 PKSKNVQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 180
Query: 796 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDTKDVDAL 975
EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAA+ADKKKGL+GPLTELDTKDVDAL
Sbjct: 181 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLIGPLTELDTKDVDAL 240
Query: 976 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 1155
LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
Sbjct: 241 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 300
Query: 1156 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 1335
NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
Sbjct: 301 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 360
Query: 1336 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 1515
RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
Sbjct: 361 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 420
Query: 1516 KERESILKLLDG 1551
KERESILKLLDG
Sbjct: 421 KERESILKLLDG 432
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,973,802
Number of extensions: 1768999
Number of successful extensions: 7737
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7655
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 507
Effective length of database: 12,403,707
Effective search space: 6288679449
Effective search space used: 6288679449
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013244
(1842 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006345.1| transcriptional adapter 3 isoform a [Homo sapie... 773 0.0
Alignment gi|NP_597814.1| transcriptional adapter 3 isoform b [Homo sapie... 654 0.0
>ref|NP_006345.1| transcriptional adapter 3 isoform a [Homo sapiens].
Length = 432
Score = 773 bits (1997), Expect = 0.0
Identities = 392/432 (90%), Positives = 393/432 (90%)
Frame = +1
Query: 256 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIXXXXXXXXXXXXXXXXXXXX 435
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGI
Sbjct: 1 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR 60
Query: 436 XXXXXAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEXXXXXXXXXXXXX 615
AETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLE
Sbjct: 61 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR 120
Query: 616 XKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 795
KSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
Sbjct: 121 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 180
Query: 796 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDTKDVDAL 975
EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAA+ADKKKGLMGPLTELDTKDVDAL
Sbjct: 181 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL 240
Query: 976 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 1155
LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
Sbjct: 241 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 300
Query: 1156 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 1335
NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
Sbjct: 301 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 360
Query: 1336 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 1515
RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL
Sbjct: 361 RTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTL 420
Query: 1516 KERESILKLLDG 1551
KERESILKLLDG
Sbjct: 421 KERESILKLLDG 432
>ref|NP_597814.1| transcriptional adapter 3 isoform b [Homo sapiens].
Length = 369
Score = 654 bits (1686), Expect = 0.0
Identities = 329/369 (89%), Positives = 330/369 (89%)
Frame = +1
Query: 256 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIXXXXXXXXXXXXXXXXXXXX 435
MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGI
Sbjct: 1 MSELKDCPLQFHDFKSVDHLKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRR 60
Query: 436 XXXXXAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEXXXXXXXXXXXXX 615
AETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLE
Sbjct: 61 LRVLEAETQILTDWQDKKGDRRFLKLGRDHELGAPPKHGKPKKQKLEGKAGHGPGPGPGR 120
Query: 616 XKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 795
KSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP
Sbjct: 121 PKSKNLQPKIQEYEFTDDPIDVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPP 180
Query: 796 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAMADKKKGLMGPLTELDTKDVDAL 975
EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAA+ADKKKGLMGPLTELDTKDVDAL
Sbjct: 181 EDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKKKGLMGPLTELDTKDVDAL 240
Query: 976 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 1155
LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR
Sbjct: 241 LKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGADGASTSPR 300
Query: 1156 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 1335
NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN
Sbjct: 301 NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKRQAELKALSAHN 360
Query: 1336 RTKKHDLLR 1362
RTKKHDLLR
Sbjct: 361 RTKKHDLLR 369
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,691,973
Number of extensions: 2149706
Number of successful extensions: 9980
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9867
Number of HSP's successfully gapped: 2
Length of query: 614
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 505
Effective length of database: 14,704,088
Effective search space: 7425564440
Effective search space used: 7425564440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013244
(1842 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 902 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 902 bits (455), Expect = 0.0
Identities = 477/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 1360 aggctggcaaaagaggaggtgagccggcaggaactgagacagcgagtccgcatggcagac 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73079209 aggctggcaaaagaggaggtgagccggcaggaactgagacagcgagtccgcatggcagac 73079268
Query: 1420 aatgaggtcatggatgccttccgtaagatcatggctgccaggcagaagaagcggactccc 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73079269 aatgaggtcatggatgccttccgtaagatcatggctgccaggcagaagaagcggactccc 73079328
Query: 1480 accaagaaggagaaggatcaggcctggaagactctgaaggagcgtgaaagcatcctgaag 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73079329 accaagaaggagaaggatcaggcctggaagactctgaaggagcgtgaaagcatcctgaag 73079388
Query: 1540 ctgctagatgggtagccatcacccctgcctcaggctgcctccccatggcctgggcaaggg 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73079389 ctgctagatgggtagccatcacccctgcctcaggctgcctccccatggcctgggcaaggg 73079448
Query: 1600 gacacccacttccttctttgggctgccagaagcctcagcctgtggctgcctgtctgatgt 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73079449 gacacccacttccttctttgggctgccagaagcctcagcctgtggctgcctgtctgatgt 73079508
Query: 1660 caaatggcaatagtctctagaggctggggcccttttctgagatctttcgacttagctctg 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73079509 caaatggcaatagtctctagaggctggggcccttttctgagatctttcgacttagctctg 73079568
Query: 1720 tccagccaggtcacaggaaccctcctgggctagcctgggggcccagtctctgcttggacc 1779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 73079569 tccagccaggtcacaggaaccctcctgggctagcct-ggggcccagtctctgcttggacc 73079627
Query: 1780 cccagatctaggggcttcatttctgggccttcctcatccccctctttcacatcctccaat 1839
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 73079628 ccaagatctaggggcttcatttctgggccttcctcatccccctcttcaccatcctccact 73079687
Query: 1840 ccc 1842
|||
Sbjct: 73079688 ccc 73079690
Score = 513 bits (259), Expect = e-142
Identities = 262/263 (99%)
Strand = Plus / Plus
Query: 460 cagatcctcaccgactggcaggataagaaaggtgaccgacgattcctgaagctgggtcga 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73071417 cagatcctcaccgactggcaggataagaaaggtgaccgacgattcctgaagctgggtcga 73071476
Query: 520 gaccatgagcttggagctccccccaaacatgggaaacccaagaagcagaaactggaaggg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73071477 gaccatgagcttggagctccccccaaacatgggaaacccaagaagcagaaactggaaggg 73071536
Query: 580 aaggcaggacatgggccgggccctggccctgggcgacccaaatccaaaaaccttcagccc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73071537 aaggcaggacatgggccgggccctggccctgggcgacccaaatccaaaaaccttcagccc 73071596
Query: 640 aagatccaggaatatgaattcactgatgaccctatcgacgtgccacgtatccccaagaat 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73071597 aagatccaggaatatgaattcactgatgaccctatcgacgtgccacgtatccccaagaat 73071656
Query: 700 gacgcccccaacagattctgggc 722
|||||||||||||| ||||||||
Sbjct: 73071657 gacgcccccaacaggttctgggc 73071679
Score = 379 bits (191), Expect = e-102
Identities = 194/195 (99%)
Strand = Plus / Plus
Query: 1168 cccttcagtgtgccacatacaaagtccctggagagccgcatcaaggaggagctgattgcc 1227
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73076506 ccctgcagtgtgccacatacaaagtccctggagagccgcatcaaggaggagctgattgcc 73076565
Query: 1228 cagggcctactggagtctgaggaccgccccgcggaggattcagaggatgaggttcttgca 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73076566 cagggcctactggagtctgaggaccgccccgcggaggattcagaggatgaggttcttgca 73076625
Query: 1288 gagctgcgcaaacggcaggctgagctgaaggcactcagtgcccacaaccgcaccaaaaaa 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73076626 gagctgcgcaaacggcaggctgagctgaaggcactcagtgcccacaaccgcaccaaaaaa 73076685
Query: 1348 catgacctgctaagg 1362
|||||||||||||||
Sbjct: 73076686 catgacctgctaagg 73076700
Score = 285 bits (144), Expect = 4e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 818 agatcccgcccctggggaagcactactcccaacgctgggcacaggaggacctgctggagg 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73073129 agatcccgcccctggggaagcactactcccaacgctgggcacaggaggacctgctggagg 73073188
Query: 878 agcagaaggacggggctcgggcagcagccatggctgacaagaagaaaggccttatggggc 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73073189 agcagaaggacggggctcgggcagcagccatggctgacaagaagaaaggccttatggggc 73073248
Query: 938 cactgactgaactagacactaaag 961
||||||||||||||||||||||||
Sbjct: 73073249 cactgactgaactagacactaaag 73073272
Score = 222 bits (112), Expect = 5e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1064 aggaaaatattatttcccctatggaggactctcctattcctgacatgtctgggaaagaat 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73074644 aggaaaatattatttcccctatggaggactctcctattcctgacatgtctgggaaagaat 73074703
Query: 1124 cgggggctgatggggcaagcacctctccccgaaatcagaacaagcccttcag 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73074704 cgggggctgatggggcaagcacctctccccgaaatcagaacaagcccttcag 73074755
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 960 agatgtggatgccctgctgaagaaatctgaggcccagcatgagcagccagaagatgggtg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73073366 agatgtggatgccctgctgaagaaatctgaggcccagcatgagcagccagaagatgggtg 73073425
Query: 1020 cccctttggtgccctgacacagcgcctcctgcaggccttggtggagg 1066
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73073426 cccctttggtgccctgacacagcgcctcctgcaggccttggtggagg 73073472
Score = 208 bits (105), Expect = 8e-51
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 711 cagattctgggcttcagtggagccctactgtgctgacatcaccagtgaggaggtgcgcac 770
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 73071786 cagattctgggcttcagtggagccctactgcgctgacatcaccagtgaggaggtgcgcac 73071845
Query: 771 actggaggagctactgaaacccccagaagatgaggctgaacattacaag 819
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73071846 actggaggagctactgaaacccccagaagatgaggctgaacattacaag 73071894
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 53,689,109
Number of extensions: 341
Number of successful extensions: 341
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 7
Length of query: 1842
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1820
Effective length of database: 2,808,408,574
Effective search space: 5111303604680
Effective search space used: 5111303604680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)