Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013251
(2789 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536182.2| PREDICTED: similar to A-kinase anchor protein 1... 890 0.0
Alignment gi|XP_854251.1| PREDICTED: similar to Rho-specific guanine nucl... 305 1e-82
Alignment gi|XP_544372.2| PREDICTED: similar to Rho-guanine nucleotide ex... 247 4e-65
Alignment gi|NP_001006123.1| rho guanine nucleotide exchange factor 2 iso... 243 9e-64
Alignment gi|NP_001002995.1| rho guanine nucleotide exchange factor 2 iso... 243 9e-64
Alignment gi|XP_547523.2| PREDICTED: similar to Rho guanine nucleotide ex... 104 4e-22
Alignment gi|XP_541596.2| PREDICTED: similar to Rho guanine nucleotide ex... 103 7e-22
Alignment gi|XP_536546.2| PREDICTED: similar to Rho guanine nucleotide ex... 100 6e-21
Alignment gi|XP_541329.2| PREDICTED: similar to FYVE, RhoGEF and PH domai... 50 9e-06
>ref|XP_536182.2| PREDICTED: similar to A-kinase anchor protein 13 isoform 2 [Canis
familiaris].
Length = 2786
Score = 890 bits (2300), Expect = 0.0
Identities = 490/685 (71%), Positives = 511/685 (74%), Gaps = 10/685 (1%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
+TKDKRFQAFVKKKMSS+VVRRLGIPECILLVTQRITKYPVLFQRILQCTKD+E EQEDL
Sbjct: 2083 HTKDKRFQAFVKKKMSSAVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQEDL 2142
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
AQSL LVKDVIGAV+SKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR
Sbjct: 2143 AQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 2202
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKY+FASLDQKSTVISLKKLIVREVAHE
Sbjct: 2203 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYVFASLDQKSTVISLKKLIVREVAHE 2262
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQD INTLNRDEDEGIPSENEEEK++L
Sbjct: 2263 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDAINTLNRDEDEGIPSENEEEKRIL 2322
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 900
DTKAR MIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA
Sbjct: 2323 DTKARELKEQLQQKDQQILLLLEEKEMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 2382
Query: 901 LKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDS 1080
LKGGPLMKSAINEVEI P EQEG+VGPVSLPRRAETFGGFDS
Sbjct: 2383 LKGGPLMKSAINEVEILQGLVSGSLGGTLGPAVSSPVEQEGIVGPVSLPRRAETFGGFDS 2442
Query: 1081 HQMNASXXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLS 1260
HQMNAS QDLRRTESDSGLKKGGNAN+VFMLKRNSEQ+VQSVIHLHELLS
Sbjct: 2443 HQMNASKGGEKEEGEDGQDLRRTESDSGLKKGGNANLVFMLKRNSEQLVQSVIHLHELLS 2502
Query: 1261 TLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQ 1440
TLQGVVLQQDSYIEDQK +SRPSSL+EQEKQRSLEKQRQDLANLQ+QQAQ
Sbjct: 2503 TLQGVVLQQDSYIEDQKLLLAERALTRSSSRPSSLVEQEKQRSLEKQRQDLANLQKQQAQ 2562
Query: 1441 HLXXXXXXXXXXXXXXXALQEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXX 1620
HL ALQERE RLA KG YQ D
Sbjct: 2563 HLEEKRRREREWEARERALQEREARLAQREQDVWRGQQDLDREREELQHKKGAYQCDLER 2622
Query: 1621 XXXXXXXXXXXXXXXKRD----------RDACQVFHQHTKMMRIXXXXXXXXXXXXXXXX 1770
KRD DACQV +QHTK++RI
Sbjct: 2623 LRTAQKQLEREQEQLKRDAERLSQRQVEHDACQVSYQHTKLLRIPSFFPNPEEPPMPSVP 2682
Query: 1771 XIAKSGSLDSELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTST 1950
IAKSGSLDSELSVSPKRNS+SRTHK+KG FHIL STSQT+++PEGQSQTPV S ST
Sbjct: 2683 SIAKSGSLDSELSVSPKRNSISRTHKDKGPFHILSSTSQTNKVPEGQSQTPV--PASAST 2740
Query: 1951 RLFGLAXXXXXXXXXXXXXGSRSQP 2025
RLFGLA GSRSQP
Sbjct: 2741 RLFGLAKPKEKKEKKKKNKGSRSQP 2765
>ref|XP_854251.1| PREDICTED: similar to Rho-specific guanine nucleotide exchange factor
p114 [Canis familiaris].
Length = 1117
Score = 305 bits (782), Expect = 1e-82
Identities = 201/508 (39%), Positives = 285/508 (56%), Gaps = 30/508 (5%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ+ +KK + S+VRRLG+ ECILLVTQRITKYPVL +RI+Q T+ + DL Q
Sbjct: 328 QNKKFQSLIKKIGNFSIVRRLGVQECILLVTQRITKYPVLVERIIQNTEAGTEDYRDLTQ 387
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDG 366
+L L+KD+I V++KV+ EK RL EI K D KS ++K+G F KED+ +++L +G
Sbjct: 388 ALNLIKDIISRVDAKVSECEKGQRLREIAGKMDLKSSSKLKNGLTFRKEDMLQRQLHLEG 447
Query: 367 GVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEK 546
+ K+ +GRLK+V AVLLTD+L+ LQEKDQKY+FAS+D K VISL+KLIVREVA+EEK
Sbjct: 448 TLCWKTTSGRLKDVLAVLLTDVLLLLQEKDQKYVFASVDSKRPVISLQKLIVREVANEEK 507
Query: 547 GLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKMLDT 726
+FLIS ++ PEM E++ SSKEERN+W+ I+ + + DE+EG SE EEEKK L+
Sbjct: 508 AMFLISASLQGPEMYEIYTSSKEERNTWMAHIRRAVESC-PDEEEGPFSEAEEEKKGLEA 566
Query: 727 KA---RXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFR-SNTE 894
+A R I+ +M E S SR+LFR +
Sbjct: 567 RALRLRDFQERLNVKDQQIAQSLGEKQQIYLEMAEMS-----GLEDVAQSRLLFRGGDPS 621
Query: 895 EALKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGF 1074
E ++G ++KSA++E+E + E G LPRRAETFGG+
Sbjct: 622 ETMQGEQILKSAMSEIE-------DIQTLICRQLGSANGQAEDAGGSSGLPRRAETFGGY 674
Query: 1075 D---SHQMNASXXXXXXXXXXXQDLRRTESDSGLKK---------------------GGN 1182
D S N +D + S LK G +
Sbjct: 675 DTVSSPSKNGILKKTCSSDPSPRDWQGPVSSPDLKPSNTLGASEEAPPAGPVPGADCGPH 734
Query: 1183 ANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQK--XXXXXXXXXXXASRP 1356
V L ++VQ + L +LL +LQ V+ QQDSY+E Q+ ++R
Sbjct: 735 LPAVLEL-----ELVQRIQTLSQLLLSLQAVIAQQDSYVEMQRASIQEREKQLRLQSTRG 789
Query: 1357 SSLIEQEKQRSLEKQRQDLANLQRQQAQ 1440
+ L+EQE+QR+ EKQR++LA +Q+QQ +
Sbjct: 790 NMLLEQERQRNFEKQREELAGVQKQQGR 817
>ref|XP_544372.2| PREDICTED: similar to Rho-guanine nucleotide exchange factor
(Rho-interacting protein 2) (RhoGEF) (RIP2) [Canis
familiaris].
Length = 1164
Score = 247 bits (631), Expect = 4e-65
Identities = 126/243 (51%), Positives = 182/243 (74%), Gaps = 2/243 (0%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ F+K + S+ + RR GIPECILLVTQRITKYPVL +RILQ TK+ E +DL +
Sbjct: 524 QNKKFQNFIKLRNSNLLARRRGIPECILLVTQRITKYPVLVERILQYTKERSEEHQDLCK 583
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDL--KRKKLVR 360
+L L+KD+I AV+ KV+ YEK + EI K ++K+ ++K+G +F K+ L K + L+
Sbjct: 584 ALCLIKDMIAAVDLKVSEYEKNQKWLEILNKIENKTYTKLKNGHVFRKQALISKERTLLY 643
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG V+ K+A GR K++ A+LLTD+L+FLQEKDQKYIFA++DQK +VISL+KLI REVA+E
Sbjct: 644 DGLVYWKTATGRFKDILALLLTDVLLFLQEKDQKYIFAAVDQKPSVISLQKLIAREVANE 703
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
E+G+FLIS PEM E+H +SKEERN+W++ IQ + + +E+ G SE++EE++
Sbjct: 704 ERGMFLISASSAGPEMYEIHTNSKEERNNWMRRIQQAVESC-PEEEGGRTSESDEERRKA 762
Query: 721 DTK 729
+ +
Sbjct: 763 EAR 765
>ref|NP_001006123.1| rho guanine nucleotide exchange factor 2 isoform B [Canis lupus
familiaris].
Length = 964
Score = 243 bits (619), Expect = 9e-64
Identities = 163/435 (37%), Positives = 239/435 (54%), Gaps = 1/435 (0%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ + ++ E++DL
Sbjct: 357 YARDKRFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSHGTDEERQDL 416
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
+LGLVK+++ V+ V EK RL EIY + D ++ + S F +E+L R+KL+
Sbjct: 417 TTALGLVKELLSNVDQDVHELEKGARLQEIYHRMDPRAQAPVPSKGPFGREELLRRKLIH 476
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG + K+A GR K+V +L+TD+LVFLQEKDQKYIF +LD K +V+SL+ LIVR++A++
Sbjct: 477 DGCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALD-KPSVVSLQNLIVRDIANQ 535
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKG+FLIS PEM EVH +S+++R++W+++IQ ++ ED + E E+E +
Sbjct: 536 EKGMFLISAA--PPEMYEVHTASRDDRSTWVRVIQQSVRVCPSREDFPL-IETEDEAYLR 592
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 900
K M + E S + P R LFRS + E
Sbjct: 593 RIKMELQQKDKALVELLREKVGLFAEMTHFQVEEDSGGVALPALP----RGLFRSESLEC 648
Query: 901 LKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDS 1080
+G L++ AI EVE P + +V P S GG S
Sbjct: 649 PRGERLLQDAIREVE----GLKDLLVGPGVELLLTPRDPALLVDPDS--------GGSTS 696
Query: 1081 HQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQSVIHLHELL 1257
+ A+ +L RT+SDS K + GN L+ E+ +Q +++L+ LL
Sbjct: 697 PGVTANGEARNFNGSI--ELCRTDSDSSQKDRNGN-----QLRAPQEEALQRLVNLYGLL 749
Query: 1258 STLQGVVLQQDSYIE 1302
LQ V QQD+ +E
Sbjct: 750 HGLQAAVAQQDTLME 764
>ref|NP_001002995.1| rho guanine nucleotide exchange factor 2 isoform A [Canis lupus
familiaris].
Length = 986
Score = 243 bits (619), Expect = 9e-64
Identities = 163/435 (37%), Positives = 239/435 (54%), Gaps = 1/435 (0%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ + ++ E++DL
Sbjct: 357 YARDKRFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSHGTDEERQDL 416
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
+LGLVK+++ V+ V EK RL EIY + D ++ + S F +E+L R+KL+
Sbjct: 417 TTALGLVKELLSNVDQDVHELEKGARLQEIYHRMDPRAQAPVPSKGPFGREELLRRKLIH 476
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG + K+A GR K+V +L+TD+LVFLQEKDQKYIF +LD K +V+SL+ LIVR++A++
Sbjct: 477 DGCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALD-KPSVVSLQNLIVRDIANQ 535
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKG+FLIS PEM EVH +S+++R++W+++IQ ++ ED + E E+E +
Sbjct: 536 EKGMFLISAA--PPEMYEVHTASRDDRSTWVRVIQQSVRVCPSREDFPL-IETEDEAYLR 592
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 900
K M + E S + P R LFRS + E
Sbjct: 593 RIKMELQQKDKALVELLREKVGLFAEMTHFQVEEDSGGVALPALP----RGLFRSESLEC 648
Query: 901 LKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDS 1080
+G L++ AI EVE P + +V P S GG S
Sbjct: 649 PRGERLLQDAIREVE----GLKDLLVGPGVELLLTPRDPALLVDPDS--------GGSTS 696
Query: 1081 HQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQSVIHLHELL 1257
+ A+ +L RT+SDS K + GN L+ E+ +Q +++L+ LL
Sbjct: 697 PGVTANGEARNFNGSI--ELCRTDSDSSQKDRNGN-----QLRAPQEEALQRLVNLYGLL 749
Query: 1258 STLQGVVLQQDSYIE 1302
LQ V QQD+ +E
Sbjct: 750 HGLQAAVAQQDTLME 764
>ref|XP_547523.2| PREDICTED: similar to Rho guanine nucleotide exchange factor (GEF) 11
isoform 2 [Canis familiaris].
Length = 1545
Score = 104 bits (260), Expect = 4e-22
Identities = 61/235 (25%), Positives = 127/235 (54%), Gaps = 14/235 (5%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
K+ RFQ F+++ S RRL + + I+ QR+TKYP+L + +L+ T+ +E E L +
Sbjct: 891 KESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESVLKHTEGGTSEHEKLCR 950
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKS--GQMFAKEDLKRKKLVR 360
+ ++++ VN V E + RL + D+ S+ R + F DL +++V
Sbjct: 951 ARDQCREILKYVNEAVKQTENQHRLEGYQKRLDTTSLERASNPLAAEFKSLDLTARRMVH 1010
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIF--------ASLDQKST---VISL 507
+G + + + + ++ +LL D+LV LQ++D+K + + D K T V+ L
Sbjct: 1011 EGPLTWRISKDKSLDLHVLLLEDLLVLLQKQDEKLMLKCHSKTAAGTSDNKQTFSPVLKL 1070
Query: 508 KKLIVREVAHEEKGLFLI-SMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNR 669
+++R VA +++ F+I + + P++ E+ A + ++N+W++++++ + R
Sbjct: 1071 NAVLIRSVATDKRAFFIICTSELGPPQIYELVALTSSDKNTWMELLEEAVRNATR 1125
>ref|XP_541596.2| PREDICTED: similar to Rho guanine nucleotide exchange factor 1
isoform 2, partial [Canis familiaris].
Length = 850
Score = 103 bits (258), Expect = 7e-22
Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 14/233 (6%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
KD RF AFV++ S RRL + + I QR+TKYP+L Q I Q T++S AE+E +
Sbjct: 517 KDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEES-AEREKVEL 575
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQM---FAKEDLKRKKLV 357
+ ++++ VN V E +RL + Y K S++R S M F D+ +KKL+
Sbjct: 576 AAECCREILHHVNQAVRDMEDLLRLKD-YQKRLDLSLLRQSSDPMLSEFKNLDITKKKLI 634
Query: 358 RDGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKST-----------VIS 504
+G + + + EV +LL D+L+ LQ +D + + S + T V+
Sbjct: 635 YEGPLTWRLTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLR 694
Query: 505 LKKLIVREVAHEEKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTL 663
L I REVA + K +++ ++ ++ E+ A + ER +W +I +T +L
Sbjct: 695 LTSAITREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCSLITETAGSL 747
>ref|XP_536546.2| PREDICTED: similar to Rho guanine nucleotide exchange factor 12
(Leukemia-associated RhoGEF) [Canis familiaris].
Length = 1708
Score = 100 bits (250), Expect = 6e-21
Identities = 72/255 (28%), Positives = 126/255 (49%), Gaps = 21/255 (8%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
KD RFQ FV+ S+ + RRL + + I QR+TKYP+L I + T + E+E + +
Sbjct: 923 KDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPMEREKVKK 981
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKS--IMRMKSGQMFAKEDLKRKKLVR 360
+ + ++ VN V E K RL + + D+ + + + + DL ++K++
Sbjct: 982 AADHCRQILNYVNQAVKEAENKQRLEDYQRRLDTSNLKLSEYPNVEELRNLDLTKRKMIH 1041
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKD--------QKYIFASLDQKST---VISL 507
+G + K + ++ +LL DILV LQ++D K + ++ D K T VI L
Sbjct: 1042 EGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKL 1101
Query: 508 KKLIVREVAHEEKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGI 687
++VR+VA + K LF+ISM ++ E+ A + E+ W +I ++ + I
Sbjct: 1102 NTVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQSAKPI 1161
Query: 688 P--------SENEEE 708
P +N+EE
Sbjct: 1162 PLPQSPPCEGDNDEE 1176
>ref|XP_541329.2| PREDICTED: similar to FYVE, RhoGEF and PH domain containing protein
3 (Zinc finger FYVE domain containing protein 5) [Canis
familiaris].
Length = 735
Score = 50.4 bits (119), Expect = 9e-06
Identities = 51/244 (20%), Positives = 102/244 (41%), Gaps = 20/244 (8%)
Frame = +1
Query: 19 FQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQSLGL 198
F+ V+ V L + +L QR+ +Y +L + L+ + +D +SL L
Sbjct: 280 FKDIVQSIQKQDVCGNLTLQHHMLEPVQRVPRYELLLKDYLKRLPRDAPDWKDAERSLEL 339
Query: 199 VKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKR--KKLVRDGGV 372
+ N+ + EK +L E+Y + + +ED+ +L+++G +
Sbjct: 340 ISTAANHSNAAIRKMEKMHKLLEVYER-------------LGGEEDIVNPANELIKEGPI 386
Query: 373 FLKSA-AGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTV---ISLKKLIVREVAHE 540
SA +G ++ L ++++ K + QK +V + + L V+++
Sbjct: 387 QKLSAKSGSAQDRHLFLFNSMILYCVPK-----LRLMGQKFSVREKMDISGLQVQDIVKS 441
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTI--------------NTLNRDED 678
I G K +E+ ++EE+ WIQ+I+DTI ++ +DED
Sbjct: 442 NAAHTFIIKGRK--RSLELQTRTEEEKKEWIQVIEDTIERHKQNSQTFKAFSSSFGQDED 499
Query: 679 EGIP 690
+P
Sbjct: 500 PSLP 503
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 99,678,107
Number of extensions: 2599731
Number of successful extensions: 10311
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10274
Number of HSP's successfully gapped: 10
Length of query: 929
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 817
Effective length of database: 15,140,872
Effective search space: 12370092424
Effective search space used: 12370092424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013251
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013251
(2789 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001787994.1| PREDICTED: A-kinase anchor protein 13 [Bos t... 665 0.0
Alignment gi|XP_002696577.1| PREDICTED: A kinase (PRKA) anchor protein 13... 452 e-127
Alignment gi|XP_002696576.1| PREDICTED: A-kinase anchor protein 13-like [... 355 9e-98
Alignment gi|XP_002688879.1| PREDICTED: Rho guanine nucleotide exchange f... 285 2e-76
Alignment gi|XP_600806.5| PREDICTED: Rho/Rac guanine nucleotide exchange ... 285 2e-76
Alignment gi|NP_001095777.1| rho-guanine nucleotide exchange factor [Bos ... 252 1e-66
Alignment gi|NP_001092351.2| rho/rac guanine nucleotide exchange factor (... 243 7e-64
Alignment gi|XP_002686019.1| PREDICTED: rho/rac guanine nucleotide exchan... 243 7e-64
Alignment gi|XP_001789079.1| PREDICTED: rho/rac guanine nucleotide exchan... 243 7e-64
Alignment gi|XP_580384.4| PREDICTED: A-kinase anchor protein 13 [Bos taur... 243 7e-64
>ref|XP_001787994.1| PREDICTED: A-kinase anchor protein 13 [Bos taurus].
Length = 1017
Score = 665 bits (1717), Expect = 0.0
Identities = 377/545 (69%), Positives = 393/545 (72%), Gaps = 8/545 (1%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
+TKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKD+E EQ+DL
Sbjct: 224 HTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQQDL 283
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
QSLGLVKDVI AV+SKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR
Sbjct: 284 TQSLGLVKDVISAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 343
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG VFLKSA GRLKEVQAVLLTDILVFLQEKDQKY+FASLDQKSTVISLKKLIVREVAHE
Sbjct: 344 DGSVFLKSATGRLKEVQAVLLTDILVFLQEKDQKYVFASLDQKSTVISLKKLIVREVAHE 403
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKGLFLISMG+KDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML
Sbjct: 404 EKGLFLISMGIKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 463
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 900
DTKAR E P C + + +L R+ T +
Sbjct: 464 DTKARELKG------------------------EAGGSGPRACQGSGALILLSRNRTLKH 499
Query: 901 LKGGPLMKS-----AIN---EVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRA 1056
P +N +EI P EQEGMVGPVSLPRRA
Sbjct: 500 HAAHPRFDQWYFVYTVNFQPLLEILQGLVSGSLRGSLGQVVSSPAEQEGMVGPVSLPRRA 559
Query: 1057 ETFGGFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSV 1236
ETFGGFDSHQMNAS QDLRRTESDSGLKKGGNAN+VFM KRNSEQV+QSV
Sbjct: 560 ETFGGFDSHQMNASKGGEKEEGDDGQDLRRTESDSGLKKGGNANLVFMHKRNSEQVIQSV 619
Query: 1237 IHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLA 1416
+HLHELLSTLQGVVLQQDSYIEDQK ASRPSSLIEQEKQRSLEKQRQDLA
Sbjct: 620 VHLHELLSTLQGVVLQQDSYIEDQKLLLSERALTRTASRPSSLIEQEKQRSLEKQRQDLA 679
Query: 1417 NLQRQQAQHLXXXXXXXXXXXXXXXALQEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKG 1596
NLQRQQAQH ALQERE RLA KG
Sbjct: 680 NLQRQQAQHQEEKRRHEREWESRERALQEREARLAQREDELRRSCQDLEREREELQQRKG 739
Query: 1597 TYQSD 1611
YQ D
Sbjct: 740 AYQGD 744
Score = 140 bits (354), Expect = 5e-33
Identities = 79/130 (60%), Positives = 87/130 (66%)
Frame = +1
Query: 1687 QVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRNSLSRTHKEKGTFH 1866
QV +Q+TK++RI IAKSGSLDSELSVSPKRNS+SRTHKEKG FH
Sbjct: 892 QVSYQNTKLLRIPSFSPNPEETPSPPAPSIAKSGSLDSELSVSPKRNSISRTHKEKGPFH 951
Query: 1867 ILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGLAXXXXXXXXXXXXXGSRSQPGDGPASE 2046
+L S SQT++ PE QSQTPV STSTRLFGLA GSRSQPGDG ASE
Sbjct: 952 MLSSASQTNKAPEAQSQTPV----STSTRLFGLAKPKEKKEKKKKGKGSRSQPGDGLASE 1007
Query: 2047 VSAEGEEIFC 2076
V AEGEEI C
Sbjct: 1008 VPAEGEEIIC 1017
>ref|XP_002696577.1| PREDICTED: A kinase (PRKA) anchor protein 13 [Bos taurus].
Length = 2637
Score = 452 bits (1164), Expect = e-127
Identities = 260/427 (60%), Positives = 274/427 (64%), Gaps = 1/427 (0%)
Frame = +1
Query: 799 MIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEALKGGPLMKSAINEVEIXXXXXXXXXX 978
MIFRDMTECST LPEDCSPTHS R LFRSNTEEAL+GGPLMKSAINEVEI
Sbjct: 2215 MIFRDMTECSTLLPEDCSPTHSCRTLFRSNTEEALQGGPLMKSAINEVEILQGLVSGSLR 2274
Query: 979 XXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDSHQMNASXXXXXXXXXXXQDLRRTESD 1158
P EQEGMVGPVSLPRRAETFGGFDSHQMNAS QDLRRTESD
Sbjct: 2275 GSLGQVVSSPAEQEGMVGPVSLPRRAETFGGFDSHQMNASKGGEKEEGDDGQDLRRTESD 2334
Query: 1159 SGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXX 1338
SGLKKGGNAN+VFM KRNSEQV+QSV+HLHELLSTLQGVVLQQDSYIEDQK
Sbjct: 2335 SGLKKGGNANLVFMHKRNSEQVIQSVVHLHELLSTLQGVVLQQDSYIEDQKLLLSERALT 2394
Query: 1339 XXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLXXXXXXXXXXXXXXXALQEREVRL 1518
ASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQH ALQERE RL
Sbjct: 2395 RTASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHQEEKRRHEREWESRERALQEREARL 2454
Query: 1519 AXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXXXXXXXXXXXXXXXXXKRDRD-ACQVF 1695
A KG YQ D +RD + QV
Sbjct: 2455 AQREDELRRSCQDLEREREELQQRKGAYQGDLERLRAAQRQLEREQEQLRRDSERLSQVS 2514
Query: 1696 HQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRNSLSRTHKEKGTFHILG 1875
+Q+TK++RI IAKSGSLDSELSVSPKRNS+SRTHKEKG FH+L
Sbjct: 2515 YQNTKLLRIPSFSPNPEETPSPPAPSIAKSGSLDSELSVSPKRNSISRTHKEKGPFHMLS 2574
Query: 1876 STSQTSRIPEGQSQTPVCTSTSTSTRLFGLAXXXXXXXXXXXXXGSRSQPGDGPASEVSA 2055
S SQT++ PE QSQTPV STSTRLFGLA GSRSQPGDG ASEV A
Sbjct: 2575 SASQTNKAPEAQSQTPV----STSTRLFGLAKPKEKKEKKKKGKGSRSQPGDGLASEVPA 2630
Query: 2056 EGEEIFC 2076
EGEEI C
Sbjct: 2631 EGEEIIC 2637
Score = 253 bits (646), Expect = 6e-67
Identities = 135/167 (80%), Positives = 146/167 (87%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
+TKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKD+E EQ+DL
Sbjct: 2063 HTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQQDL 2122
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
QSLGLVKDVI AV+SKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR
Sbjct: 2123 TQSLGLVKDVISAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 2182
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVI 501
DG VFLKSA GRLKE IL+ L+EK+ IF + + ST++
Sbjct: 2183 DGSVFLKSATGRLKEQLQQKDQQILLLLEEKEM--IFRDMTECSTLL 2227
>ref|XP_002696576.1| PREDICTED: A-kinase anchor protein 13-like [Bos taurus].
Length = 247
Score = 355 bits (912), Expect = 9e-98
Identities = 184/195 (94%), Positives = 190/195 (97%)
Frame = +1
Query: 151 KDSEAEQEDLAQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAK 330
+D+E EQ+DL QSLGLVKDVI AV+SKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAK
Sbjct: 24 QDNEVEQQDLTQSLGLVKDVISAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAK 83
Query: 331 EDLKRKKLVRDGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLK 510
EDLKRKKLVRDG VFLKSA GRLKEVQAVLLTDILVFLQEKDQKY+FASLDQKSTVISLK
Sbjct: 84 EDLKRKKLVRDGSVFLKSATGRLKEVQAVLLTDILVFLQEKDQKYVFASLDQKSTVISLK 143
Query: 511 KLIVREVAHEEKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIP 690
KLIVREVAHEEKGLFLISMG+KDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIP
Sbjct: 144 KLIVREVAHEEKGLFLISMGIKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIP 203
Query: 691 SENEEEKKMLDTKAR 735
SENEEEKKMLDTKAR
Sbjct: 204 SENEEEKKMLDTKAR 218
>ref|XP_002688879.1| PREDICTED: Rho guanine nucleotide exchange factor 18-like [Bos
taurus].
Length = 1258
Score = 285 bits (728), Expect = 2e-76
Identities = 189/486 (38%), Positives = 277/486 (56%), Gaps = 8/486 (1%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ +K+ + S+VRRLG+ ECILLVTQRITKYPVL +RI+Q T+ + DL Q
Sbjct: 490 QNKKFQNLIKRIGNFSIVRRLGVQECILLVTQRITKYPVLVERIIQNTEAGSEDHRDLTQ 549
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDG 366
+L L+KD+I V+++V+ EK RL EI K D KS ++K+G F KED+ +++L +G
Sbjct: 550 ALNLIKDIISQVDARVSECEKGQRLREIAGKMDLKSSSKLKNGLTFRKEDMLQRQLHLEG 609
Query: 367 GVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEK 546
+ K+ +GRLK+V AVLLTD+L+ LQEKDQKY+FAS+D K VISL+KLIVREVA+EEK
Sbjct: 610 TLCWKTTSGRLKDVLAVLLTDVLLLLQEKDQKYVFASVDSKRPVISLQKLIVREVANEEK 669
Query: 547 GLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKMLDT 726
+FLIS + PEM E++ SSKE+RN+W+ I+ + + DE+EG SE EEEKK+++T
Sbjct: 670 AMFLISASLHGPEMYEIYTSSKEDRNTWMAHIRRAVESC-PDEEEGPFSEAEEEKKVVET 728
Query: 727 KA---RXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFR-SNTE 894
+A R I+ +M E S ED + SR+LFR +
Sbjct: 729 RAVRLRDFQERLNRKDQQIAQSLSEKQQIYLEMAEMSG--LEDLA---LSRLLFRGGDPP 783
Query: 895 EALKGGPLMKSAINEVE-IXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGG 1071
E L+G ++KSA++E+E I G G + +
Sbjct: 784 ENLQGELILKSAMSEIEDIQSFICRRLGNAYCQAEDGGSAGSPGKDGSLQKNMCSSDLSP 843
Query: 1072 FDSHQMNAS-XXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLH 1248
D + +S ++ + G G + V L ++VQ + L
Sbjct: 844 RDWQGLVSSLDSRPGDTQGAPEEASKVAESPGADPGPHPPAVLEL-----ELVQRIQTLS 898
Query: 1249 ELLSTLQGVVLQQDSYIEDQK--XXXXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANL 1422
+LL +LQ V+ QQDSY+E QK ++R + L+EQE+QR+ EKQR++LA +
Sbjct: 899 QLLLSLQVVIAQQDSYVEIQKAAIQEREKQFRLQSTRGNLLLEQERQRNFEKQREELAGV 958
Query: 1423 QRQQAQ 1440
Q+ Q Q
Sbjct: 959 QKLQGQ 964
>ref|XP_600806.5| PREDICTED: Rho/Rac guanine nucleotide exchange factor 18 [Bos
taurus].
Length = 1258
Score = 285 bits (728), Expect = 2e-76
Identities = 189/486 (38%), Positives = 277/486 (56%), Gaps = 8/486 (1%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ +K+ + S+VRRLG+ ECILLVTQRITKYPVL +RI+Q T+ + DL Q
Sbjct: 490 QNKKFQNLIKRIGNFSIVRRLGVQECILLVTQRITKYPVLVERIIQNTEAGSEDHRDLTQ 549
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDG 366
+L L+KD+I V+++V+ EK RL EI K D KS ++K+G F KED+ +++L +G
Sbjct: 550 ALNLIKDIISQVDARVSECEKGQRLREIAGKMDLKSSSKLKNGLTFRKEDMLQRQLHLEG 609
Query: 367 GVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEK 546
+ K+ +GRLK+V AVLLTD+L+ LQEKDQKY+FAS+D K VISL+KLIVREVA+EEK
Sbjct: 610 TLCWKTTSGRLKDVLAVLLTDVLLLLQEKDQKYVFASVDSKRPVISLQKLIVREVANEEK 669
Query: 547 GLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKMLDT 726
+FLIS + PEM E++ SSKE+RN+W+ I+ + + DE+EG SE EEEKK+++T
Sbjct: 670 AMFLISASLHGPEMYEIYTSSKEDRNTWMAHIRRAVESC-PDEEEGPFSEAEEEKKVVET 728
Query: 727 KA---RXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFR-SNTE 894
+A R I+ +M E S ED + SR+LFR +
Sbjct: 729 RAVRLRDFQERLNRKDQQIAQSLSEKQQIYLEMAEMSG--LEDLA---LSRLLFRGGDPP 783
Query: 895 EALKGGPLMKSAINEVE-IXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGG 1071
E L+G ++KSA++E+E I G G + +
Sbjct: 784 ENLQGELILKSAMSEIEDIQSFICRRLGNAYCQAEDGGSAGSPGKDGSLQKNMCSSDLSP 843
Query: 1072 FDSHQMNAS-XXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLH 1248
D + +S ++ + G G + V L ++VQ + L
Sbjct: 844 RDWQGLVSSLDSRPGDTQGAPEEASKVAESPGADPGPHPPAVLEL-----ELVQRIQTLS 898
Query: 1249 ELLSTLQGVVLQQDSYIEDQK--XXXXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANL 1422
+LL +LQ V+ QQDSY+E QK ++R + L+EQE+QR+ EKQR++LA +
Sbjct: 899 QLLLSLQVVIAQQDSYVEIQKAAIQEREKQFRLQSTRGNLLLEQERQRNFEKQREELAGV 958
Query: 1423 QRQQAQ 1440
Q+ Q Q
Sbjct: 959 QKLQGQ 964
>ref|NP_001095777.1| rho-guanine nucleotide exchange factor [Bos taurus].
Length = 1371
Score = 252 bits (643), Expect = 1e-66
Identities = 129/243 (53%), Positives = 184/243 (75%), Gaps = 2/243 (0%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ F+K + S+ + RR GIPECILLVTQRITKYPVL +RILQ TK+S EQ DL +
Sbjct: 638 QNKKFQNFIKLRNSNLLARRRGIPECILLVTQRITKYPVLVERILQYTKESTEEQRDLCK 697
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDL--KRKKLVR 360
+L L+KD+I AV+ KV+ YEKK + EI K ++K+ ++K+G +F K+ L K + L+
Sbjct: 698 ALCLIKDMIAAVDLKVSEYEKKQKWLEILNKIENKTYTKLKNGHVFRKQALMSKERTLLY 757
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG V+ K+A GR K++ A+LLTD+L+FLQEKDQKYIFA++DQK +VISL+KLI REVA+E
Sbjct: 758 DGLVYWKTATGRFKDILALLLTDVLLFLQEKDQKYIFAAVDQKPSVISLQKLIAREVANE 817
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
E+G+FLIS PEM E+H +SKEERN+W++ IQ + + +E+ G SE++EE++
Sbjct: 818 ERGMFLISASSAGPEMYEIHTNSKEERNTWMRRIQQAVESC-PEEEGGRTSESDEERRKA 876
Query: 721 DTK 729
+ +
Sbjct: 877 EAR 879
>ref|NP_001092351.2| rho/rac guanine nucleotide exchange factor (GEF) 2 [Bos taurus].
Length = 987
Score = 243 bits (620), Expect = 7e-64
Identities = 179/492 (36%), Positives = 259/492 (52%), Gaps = 13/492 (2%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ + E E++DL
Sbjct: 356 YARDKRFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSHGMEEERQDL 415
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
++LGLVK+++ V+ V EK RL EIY + D ++ + F +E+L R+KL+
Sbjct: 416 TKALGLVKELLSNVDQDVHELEKGARLQEIYNRMDPRAQAPVPGKGPFGREELLRRKLIH 475
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG + K+A GR K+V +L+TD+LVFLQEKDQKYIF +LD K +V+SL+ LIVR++A++
Sbjct: 476 DGCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALD-KPSVVSLQNLIVRDIANQ 534
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKG+FLIS PEM EVH +S+++R++WI++IQ ++ ED + E E+E +
Sbjct: 535 EKGMFLISAA--PPEMYEVHTASRDDRSTWIRVIQQSVRVCPSREDFPL-IETEDEAYLR 591
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMI-FRDMTECSTPLPEDCSPTHSSRILFRSNTEE 897
K M F+ + S+ +P P R LFRS + E
Sbjct: 592 RIKMELQQKDRALVELLQEKVGLFAEMTHFQVEEDGSSGVPLPTLP----RGLFRSESLE 647
Query: 898 ALKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQE----GMVGP-VSLPRRAET 1062
+ +G L++ AI EVE P E G P V+ A T
Sbjct: 648 SPRGERLLQDAIREVEGLKDLLVGPGVELLLTPREPPLPMEPDSGGNTSPGVTANGEART 707
Query: 1063 FGGFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQSVI 1239
F G +L R +SDS K + GN L+ E+ +Q ++
Sbjct: 708 FNG-------------------SIELCRADSDSSQKDRNGN-----QLRSPQEEALQRLV 743
Query: 1240 HLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRS------LEKQ 1401
+L+ LL LQ V QQD+ +E + +R +S + E R+ EKQ
Sbjct: 744 NLYGLLHGLQAAVAQQDTLMEAR--FPEGPERREKLTRANSR-DGEAGRAGGVPAVPEKQ 800
Query: 1402 RQDLANLQRQQA 1437
+LA LQRQ A
Sbjct: 801 ATELALLQRQHA 812
>ref|XP_002686019.1| PREDICTED: rho/rac guanine nucleotide exchange factor (GEF) 2 [Bos
taurus].
Length = 987
Score = 243 bits (620), Expect = 7e-64
Identities = 179/492 (36%), Positives = 259/492 (52%), Gaps = 13/492 (2%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ + E E++DL
Sbjct: 356 YARDKRFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSHGMEEERQDL 415
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
++LGLVK+++ V+ V EK RL EIY + D ++ + F +E+L R+KL+
Sbjct: 416 TKALGLVKELLSNVDQDVHELEKGARLQEIYNRMDPRAQAPVPGKGPFGREELLRRKLIH 475
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG + K+A GR K+V +L+TD+LVFLQEKDQKYIF +LD K +V+SL+ LIVR++A++
Sbjct: 476 DGCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALD-KPSVVSLQNLIVRDIANQ 534
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKG+FLIS PEM EVH +S+++R++WI++IQ ++ ED + E E+E +
Sbjct: 535 EKGMFLISAA--PPEMYEVHTASRDDRSTWIRVIQQSVRVCPSREDFPL-IETEDEAYLR 591
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMI-FRDMTECSTPLPEDCSPTHSSRILFRSNTEE 897
K M F+ + S+ +P P R LFRS + E
Sbjct: 592 RIKMELQQKDRALVELLQEKVGLFAEMTHFQVEEDGSSGVPLPTLP----RGLFRSESLE 647
Query: 898 ALKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQE----GMVGP-VSLPRRAET 1062
+ +G L++ AI EVE P E G P V+ A T
Sbjct: 648 SPRGERLLQDAIREVEGLKDLLVGPGVELLLTPREPPLPMEPDSGGNTSPGVTANGEART 707
Query: 1063 FGGFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQSVI 1239
F G +L R +SDS K + GN L+ E+ +Q ++
Sbjct: 708 FNG-------------------SIELCRADSDSSQKDRNGN-----QLRSPQEEALQRLV 743
Query: 1240 HLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRS------LEKQ 1401
+L+ LL LQ V QQD+ +E + +R +S + E R+ EKQ
Sbjct: 744 NLYGLLHGLQAAVAQQDTLMEAR--FPEGPERREKLTRANSR-DGEAGRAGGVPAVPEKQ 800
Query: 1402 RQDLANLQRQQA 1437
+LA LQRQ A
Sbjct: 801 ATELALLQRQHA 812
>ref|XP_001789079.1| PREDICTED: rho/rac guanine nucleotide exchange factor (GEF) 2 isoform
1 [Bos taurus].
Length = 987
Score = 243 bits (620), Expect = 7e-64
Identities = 179/492 (36%), Positives = 259/492 (52%), Gaps = 13/492 (2%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ + E E++DL
Sbjct: 356 YARDKRFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLINRILQHSHGMEEERQDL 415
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
++LGLVK+++ V+ V EK RL EIY + D ++ + F +E+L R+KL+
Sbjct: 416 TKALGLVKELLSNVDQDVHELEKGARLQEIYNRMDPRAQAPVPGKGPFGREELLRRKLIH 475
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG + K+A GR K+V +L+TD+LVFLQEKDQKYIF +LD K +V+SL+ LIVR++A++
Sbjct: 476 DGCLLWKTATGRFKDVLMLLMTDVLVFLQEKDQKYIFPALD-KPSVVSLQNLIVRDIANQ 534
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKG+FLIS PEM EVH +S+++R++WI++IQ ++ ED + E E+E +
Sbjct: 535 EKGMFLISAA--PPEMYEVHTASRDDRSTWIRVIQQSVRVCPSREDFPL-IETEDEAYLR 591
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMI-FRDMTECSTPLPEDCSPTHSSRILFRSNTEE 897
K M F+ + S+ +P P R LFRS + E
Sbjct: 592 RIKMELQQKDRALVELLQEKVGLFAEMTHFQVEEDGSSGVPLPTLP----RGLFRSESLE 647
Query: 898 ALKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQE----GMVGP-VSLPRRAET 1062
+ +G L++ AI EVE P E G P V+ A T
Sbjct: 648 SPRGERLLQDAIREVEGLKDLLVGPGVELLLTPREPPLPMEPDSGGNTSPGVTANGEART 707
Query: 1063 FGGFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQSVI 1239
F G +L R +SDS K + GN L+ E+ +Q ++
Sbjct: 708 FNG-------------------SIELCRADSDSSQKDRNGN-----QLRSPQEEALQRLV 743
Query: 1240 HLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRS------LEKQ 1401
+L+ LL LQ V QQD+ +E + +R +S + E R+ EKQ
Sbjct: 744 NLYGLLHGLQAAVAQQDTLMEAR--FPEGPERREKLTRANSR-DGEAGRAGGVPAVPEKQ 800
Query: 1402 RQDLANLQRQQA 1437
+LA LQRQ A
Sbjct: 801 ATELALLQRQHA 812
>ref|XP_580384.4| PREDICTED: A-kinase anchor protein 13 [Bos taurus].
Length = 2395
Score = 243 bits (620), Expect = 7e-64
Identities = 125/134 (93%), Positives = 129/134 (96%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
+TKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKD+E EQ+DL
Sbjct: 2063 HTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQQDL 2122
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
QSLGLVKDVI AV+SKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR
Sbjct: 2123 TQSLGLVKDVISAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 2182
Query: 361 DGGVFLKSAAGRLK 402
DG VFLKSA GRLK
Sbjct: 2183 DGSVFLKSATGRLK 2196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 95,778,501
Number of extensions: 2536550
Number of successful extensions: 10320
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 10285
Number of HSP's successfully gapped: 21
Length of query: 929
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 817
Effective length of database: 13,975,518
Effective search space: 11417998206
Effective search space used: 11417998206
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013251
(2789 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926509.3| PREDICTED: a-kinase anchor protein 13, parti... 997 0.0
Alignment gi|XP_003123205.2| PREDICTED: rho guanine nucleotide exchange f... 257 2e-68
Alignment gi|NP_001121935.1| rho guanine nucleotide exchange factor 2 [Su... 244 2e-64
Alignment gi|XP_001927750.3| PREDICTED: rho guanine nucleotide exchange f... 108 2e-23
Alignment gi|XP_003130004.1| PREDICTED: rho guanine nucleotide exchange f... 103 5e-22
Alignment gi|XP_003127228.2| PREDICTED: rho guanine nucleotide exchange f... 100 6e-21
>ref|XP_001926509.3| PREDICTED: a-kinase anchor protein 13, partial [Sus scrofa].
Length = 1417
Score = 997 bits (2577), Expect = 0.0
Identities = 544/692 (78%), Positives = 544/692 (78%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL
Sbjct: 726 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 785
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR
Sbjct: 786 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 845
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE
Sbjct: 846 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 905
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML
Sbjct: 906 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 965
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 900
DTKAR MIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA
Sbjct: 966 DTKARELKEQLQQKDQQILLLLEEKEMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 1025
Query: 901 LKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDS 1080
LKGGPLMKSAINEVEI PTEQEGMVGPVSLPRRAETFGGFDS
Sbjct: 1026 LKGGPLMKSAINEVEILQSLVSGSLGGTLGQTVSSPTEQEGMVGPVSLPRRAETFGGFDS 1085
Query: 1081 HQMNASXXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLS 1260
HQMNAS QDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLS
Sbjct: 1086 HQMNASKGGEKEEGDDGQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLS 1145
Query: 1261 TLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQ 1440
TLQGVVLQQDSYIEDQK ASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQ
Sbjct: 1146 TLQGVVLQQDSYIEDQKLLLTERTLTRTASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQ 1205
Query: 1441 HLXXXXXXXXXXXXXXXALQEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXX 1620
HL ALQEREVRLA KGTYQSD
Sbjct: 1206 HLEEKRRREREWEARDRALQEREVRLAQREDELRRGRQDLEREREELQQRKGTYQSDLER 1265
Query: 1621 XXXXXXXXXXXXXXXKRDRDACQVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDS 1800
KRDRDACQVFHQHTKMMRI IAKSGSLDS
Sbjct: 1266 LRAAQRQLEREQEQLKRDRDACQVFHQHTKMMRIPSFSPSPEEAPLPSVPSIAKSGSLDS 1325
Query: 1801 ELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGLAXXXX 1980
ELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGLA
Sbjct: 1326 ELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGLAKPKE 1385
Query: 1981 XXXXXXXXXGSRSQPGDGPASEVSAEGEEIFC 2076
GSRSQPGDGPASEVSAEGEEIFC
Sbjct: 1386 KKEKKKKSKGSRSQPGDGPASEVSAEGEEIFC 1417
>ref|XP_003123205.2| PREDICTED: rho guanine nucleotide exchange factor 18 [Sus scrofa].
Length = 819
Score = 257 bits (657), Expect = 2e-68
Identities = 184/499 (36%), Positives = 265/499 (53%), Gaps = 24/499 (4%)
Frame = +1
Query: 16 RFQAFVKKKMSS-SVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQSL 192
R Q ++K+ + S+VRRLG+ ECILLVTQRITKYPVL +RI+Q T+ E +DL Q+L
Sbjct: 42 RAQKLSQQKIGNFSIVRRLGVQECILLVTQRITKYPVLVERIIQNTEAGSEENKDLTQAL 101
Query: 193 GLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDGGV 372
L++D+I V+++V+ EK RL EI K D KS ++K+G F KED+ +++L +G +
Sbjct: 102 NLIRDIISQVDARVSECEKGQRLKEITGKMDLKSSSKLKNGLTFRKEDMLQRQLHLEGTL 161
Query: 373 FLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEKGL 552
K+ +GRLK+V AVLLTD+L+ LQEKDQKY+FAS+D K VISL+KLIVREVA+EEK +
Sbjct: 162 CWKTTSGRLKDVLAVLLTDVLLLLQEKDQKYVFASVDSKRPVISLQKLIVREVANEEKAM 221
Query: 553 FLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKMLDTKA 732
FLIS + PEM E++ SSKEERN+W+ I+ + + DE+EG SE +
Sbjct: 222 FLISASLHGPEMYEIYTSSKEERNTWMAHIRRAVESC-PDEEEGPFSEARA------MRL 274
Query: 733 RXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA-LKG 909
R I+ +M E S L + P R+LFR L+G
Sbjct: 275 REFQEQLNVKDQQIAQSLSEKQQIYLEMAEMS-GLEDLAQP----RLLFRGGDPPGNLQG 329
Query: 910 GPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDS--- 1080
++KSA++E+E TE G L RR E+ GG DS
Sbjct: 330 ELILKSAMSEIE---------DIQSLICRQLGSTEDGSGCG--VLARRVESSGGHDSAGN 378
Query: 1081 -HQMNASXXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSE------------- 1218
+ + +D + K G + E
Sbjct: 379 PGKNGSYQKKVCSSDPGPRDPQGPAGSPDWKLGDTPGASEEAPQAGEVPGAEPGPRLPAV 438
Query: 1219 ---QVVQSVIHLHELLSTLQGVVLQQDSYIEDQK--XXXXXXXXXXXASRPSSLIEQEKQ 1383
++V + L +LL +LQ V+ QQDSY+E Q+ ++R + L+EQE+Q
Sbjct: 439 VESELVHRIQTLSQLLLSLQAVIAQQDSYVEMQRATIQEREKQFRLQSTRGNLLLEQERQ 498
Query: 1384 RSLEKQRQDLANLQRQQAQ 1440
R+ EKQR++LA +Q+ Q Q
Sbjct: 499 RNFEKQREELAGVQKLQGQ 517
>ref|NP_001121935.1| rho guanine nucleotide exchange factor 2 [Sus scrofa].
Length = 961
Score = 244 bits (622), Expect = 2e-64
Identities = 178/493 (36%), Positives = 255/493 (51%), Gaps = 14/493 (2%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ T E E++DL
Sbjct: 330 YARDKRFQQFIRKVTRSAVLKRHGVQECILLVTQRITKYPVLISRILQHTHGIEEERQDL 389
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
+LGLVK+++ V+ V EK RL EIY + D ++ + F +E+L R+KL+
Sbjct: 390 TTALGLVKELLSNVDQDVHELEKGARLQEIYNRMDPRAQTPVPGKGPFGREELLRRKLIH 449
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG + K+AAGR K+V +L+TD+LVFLQEKDQKYIF +LD K +V+SL+ LIVR++A++
Sbjct: 450 DGCLLWKTAAGRFKDVLMLLMTDVLVFLQEKDQKYIFPALD-KPSVVSLQNLIVRDIANQ 508
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKG+FLIS PEM EVH +S+++R++WI++IQ ++ ED + E E+E +
Sbjct: 509 EKGMFLISAA--PPEMYEVHTASRDDRSTWIRVIQQSVRVCPSREDFPL-IETEDEAYLR 565
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTE---CSTPLPEDCSPTHSSRILFRSNT 891
K M + E PLP R LFRS +
Sbjct: 566 RIKMELQQKDRALVELLQEKVGLFAEMTHFQVEEDGGGGMPLPT------LPRGLFRSES 619
Query: 892 EEALKGGPLMKSAINEVE----IXXXXXXXXXXXXXXXXXXXPTEQEGMVGP-VSLPRRA 1056
E+ +G L++ AI EVE + T+ G P V+ A
Sbjct: 620 LESPRGERLLQDAIREVEGLKDLLVGPGVELLLTSREPALPVETDSGGNTSPGVTANGEA 679
Query: 1057 ETFGGFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQS 1233
TF G +L R +SDS K + GN L+ E+ +Q
Sbjct: 680 RTFNG-------------------SIELCRADSDSSQKDRNGN-----QLRSPQEEALQR 715
Query: 1234 VIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSL-----EK 1398
+++L+ LL LQ V QQD+ +E + +R +S + + EK
Sbjct: 716 LVNLYGLLHGLQAAVAQQDTLMEAR--FPEGPERREKLTRANSRDGEAGRAGAAPVAPEK 773
Query: 1399 QRQDLANLQRQQA 1437
Q +LA LQRQ A
Sbjct: 774 QATELALLQRQHA 786
>ref|XP_001927750.3| PREDICTED: rho guanine nucleotide exchange factor 11 [Sus scrofa].
Length = 1570
Score = 108 bits (269), Expect = 2e-23
Identities = 62/235 (26%), Positives = 126/235 (53%), Gaps = 14/235 (5%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
K+ RFQ F+++ S RRL + + I+ QR+TKYP+L + I++ T+ E E L +
Sbjct: 897 KESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLENIIKHTEGGTTEHEKLCR 956
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKS--GQMFAKEDLKRKKLVR 360
+ ++++ VN V E + RL + D+ S+ R + F DL +K++
Sbjct: 957 ARDQCREILKYVNEAVKQTENRHRLESYQKRLDTTSLERASNPLAAEFKSLDLTARKMIH 1016
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIF--------ASLDQKST---VISL 507
+G + + + + ++ +LL D+LV LQ++D+K + S D K T V+ L
Sbjct: 1017 EGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKL 1076
Query: 508 KKLIVREVAHEEKGLFLI-SMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNR 669
+++R VA +++ F+I + + P++ E+ A + ++N+W++++++ + R
Sbjct: 1077 NAVLIRSVATDKRAFFIICTSELGPPQIYELVALTSSDKNTWMELLEEAVRNATR 1131
>ref|XP_003130004.1| PREDICTED: rho guanine nucleotide exchange factor 12 [Sus scrofa].
Length = 1615
Score = 103 bits (257), Expect = 5e-22
Identities = 73/256 (28%), Positives = 128/256 (50%), Gaps = 21/256 (8%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
KD RFQ FV+ S+ + RRL + + I QR+TKYP+L I + T + AE+E + +
Sbjct: 975 KDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPAEREKVKK 1033
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKS--IMRMKSGQMFAKEDLKRKKLVR 360
+ + ++ VN V E K RL + + D+ + + + + DL ++K++
Sbjct: 1034 AADHCRQILNYVNQAVKEAENKQRLEDYQRRLDTSNLKLSEYPNVEELRNLDLTKRKMIH 1093
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKD--------QKYIFASLDQKST---VISL 507
+G + K + ++ +LL DILV LQ++D K + ++ D K T VI L
Sbjct: 1094 EGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKL 1153
Query: 508 KKLIVREVAHEEKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGI 687
++VR+VA + K LF+ISM ++ E+ A + E+ W +I ++ + I
Sbjct: 1154 NTVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQSTKPI 1213
Query: 688 P--------SENEEEK 711
P +N+EE+
Sbjct: 1214 PLPESPPCEGDNDEEE 1229
>ref|XP_003127228.2| PREDICTED: rho guanine nucleotide exchange factor 1 [Sus scrofa].
Length = 913
Score = 100 bits (248), Expect = 6e-21
Identities = 71/252 (28%), Positives = 123/252 (48%), Gaps = 19/252 (7%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
K+ RF AFV++ S RRL + + I QR+TKYP+L Q I Q T++ AE+E + Q
Sbjct: 533 KEPRFCAFVQEAESQPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEE-PAEREKVEQ 591
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQM--FAKEDLKRKKLVR 360
+ ++++ VN V E +RL + + D + + + F D+ +KKLV
Sbjct: 592 AAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLKQSSDPMLSEFKNLDITKKKLVH 651
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKST-----------VISL 507
+G + + + EV +LL D+L+ LQ +D + + S + T V+ L
Sbjct: 652 EGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDDRLLLKSHSRTLTPTPDGKTMLRPVLRL 711
Query: 508 KKLIVREVAHEEKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTL------NR 669
+ REVA + K ++I ++ + E+ A + ER +W +I +T +L +R
Sbjct: 712 TSAMTREVATDHKAFYVIFTWDQEAHIYELVAQTVSERKNWCTLITETAGSLKVPAPTSR 771
Query: 670 DEDEGIPSENEE 705
+ PS + E
Sbjct: 772 PKHRPSPSSSRE 783
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 61,643,806
Number of extensions: 1628556
Number of successful extensions: 6750
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6728
Number of HSP's successfully gapped: 7
Length of query: 929
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 821
Effective length of database: 8,655,056
Effective search space: 7105800976
Effective search space used: 7105800976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013251
(2789 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083608.1| A kinase (PRKA) anchor protein 13 [Mus musculus]. 878 0.0
Alignment gi|NP_598723.3| rho guanine nucleotide exchange factor 18 [Mus ... 290 5e-78
Alignment gi|NP_036156.2| rho-guanine nucleotide exchange factor [Mus mus... 248 1e-65
Alignment gi|NP_001185842.1| rho guanine nucleotide exchange factor 2 iso... 246 9e-65
Alignment gi|NP_001185841.1| rho guanine nucleotide exchange factor 2 iso... 246 9e-65
Alignment gi|NP_001185840.1| rho guanine nucleotide exchange factor 2 iso... 246 9e-65
Alignment gi|NP_032513.3| rho guanine nucleotide exchange factor 2 isofor... 246 9e-65
Alignment gi|NP_001003912.1| rho guanine nucleotide exchange factor 11 [M... 102 2e-21
Alignment gi|NP_081420.2| rho guanine nucleotide exchange factor 12 [Mus ... 99 2e-20
Alignment gi|NP_032514.1| rho guanine nucleotide exchange factor 1 isofor... 96 1e-19
>ref|NP_083608.1| A kinase (PRKA) anchor protein 13 [Mus musculus].
Length = 2776
Score = 878 bits (2269), Expect = 0.0
Identities = 481/702 (68%), Positives = 513/702 (73%), Gaps = 10/702 (1%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKD+E EQEDL
Sbjct: 2078 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQEDL 2137
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
QSL LVKDVIGAV+SKVASYEKKVRL EIYTKTDSKSIMRMKSGQMFAKEDL+RKKLVR
Sbjct: 2138 TQSLSLVKDVIGAVDSKVASYEKKVRLGEIYTKTDSKSIMRMKSGQMFAKEDLRRKKLVR 2197
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG VFLKS GRLKEVQAVLLTDILVFLQEKDQKY+FASLD KSTVISLKKLIVREVAHE
Sbjct: 2198 DGSVFLKSTTGRLKEVQAVLLTDILVFLQEKDQKYVFASLDHKSTVISLKKLIVREVAHE 2257
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKGLFLISMG+KDPEMVEVHASS+EERNSWIQIIQDTIN+LNRDEDEGIPSENEEEKK+L
Sbjct: 2258 EKGLFLISMGVKDPEMVEVHASSREERNSWIQIIQDTINSLNRDEDEGIPSENEEEKKLL 2317
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 900
DTKAR MIFRDMTECSTPLPEDCSPTHS R+LFRSNTEEA
Sbjct: 2318 DTKARELKEQLQQKDQQILLLLEEKEMIFRDMTECSTPLPEDCSPTHSPRVLFRSNTEEA 2377
Query: 901 LKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDS 1080
LKGGPLMKSAINEVEI P EQE M P+SLPRRAETFGGFD
Sbjct: 2378 LKGGPLMKSAINEVEILQSLVSGSLGGTLGQSISSPVEQEVMAAPISLPRRAETFGGFDC 2437
Query: 1081 HQMNASXXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLS 1260
HQMNAS QDLRRTESDSGLKKGGN N+VFMLKRNSEQVVQS++HLHELLS
Sbjct: 2438 HQMNASKGGEKEEGDDGQDLRRTESDSGLKKGGNGNLVFMLKRNSEQVVQSIVHLHELLS 2497
Query: 1261 TLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQ 1440
LQGVVLQQDSYIEDQK ASRPSSLIEQEKQRSLEKQRQDLANLQ+QQAQ
Sbjct: 2498 MLQGVVLQQDSYIEDQKLVLTEKVLTRSASRPSSLIEQEKQRSLEKQRQDLANLQKQQAQ 2557
Query: 1441 HLXXXXXXXXXXXXXXXALQEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXX 1620
HL L++RE +LA KGTYQ D
Sbjct: 2558 HLEEKRRREREWEAREQELRDREAKLAEREETVRRRQQDLERDREELQQKKGTYQCDLER 2617
Query: 1621 XXXXXXXXXXXXXXXKR----------DRDACQVFHQHTKMMRIXXXXXXXXXXXXXXXX 1770
+R D++ CQV ++H ++MRI
Sbjct: 2618 LRAAQKQLEREQEQLRRDTERLSQRQMDQNLCQVSNKHGRLMRIPSFLPNSDEFSSPSAP 2677
Query: 1771 XIAKSGSLDSELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTST 1950
+ KSGSLDSELSVSPKRNS+SRT K+KG FHILGS SQT ++PEGQSQ P +STSTST
Sbjct: 2678 SVTKSGSLDSELSVSPKRNSISRTQKDKGPFHILGSASQT-KVPEGQSQAP--SSTSTST 2734
Query: 1951 RLFGLAXXXXXXXXXXXXXGSRSQPGDGPASEVSAEGEEIFC 2076
RLFGL+ GSR+QPGDGPASEV AEGEEIFC
Sbjct: 2735 RLFGLSKPKEKKEKKKKSKGSRTQPGDGPASEVPAEGEEIFC 2776
>ref|NP_598723.3| rho guanine nucleotide exchange factor 18 [Mus musculus].
Length = 1021
Score = 290 bits (741), Expect = 5e-78
Identities = 198/506 (39%), Positives = 285/506 (56%), Gaps = 28/506 (5%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
+ K+FQ +KK + S+VRRLG+ ECILLVTQRITKYPVL +RI+Q T+ + +DL+Q
Sbjct: 224 QSKKFQNLIKKIGNFSIVRRLGVQECILLVTQRITKYPVLVERIIQNTEAGTEDYKDLSQ 283
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKED-LKRKKLVRD 363
+L L+KD+I V++KV+ YEK RL EI KTD KS ++K+G F KED L++++L +
Sbjct: 284 ALSLIKDIISQVDAKVSEYEKDQRLKEIAAKTDQKSSGKLKNGLTFRKEDMLQQRQLHLE 343
Query: 364 GGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEE 543
G + KS +GRLK+V AVLLTD+L+ LQEKDQKY+FAS+D K VISL+KLIVREVA+EE
Sbjct: 344 GALCWKSTSGRLKDVLAVLLTDVLLLLQEKDQKYVFASVDSKPPVISLQKLIVREVANEE 403
Query: 544 KGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEK--KM 717
K +FLIS M+ PEM E++ SSKE+RN W+ I+ + + DE+E + SE EE+K +
Sbjct: 404 KAMFLISASMQGPEMYEMYTSSKEDRNIWMAHIRRAVESC-PDEEEDVFSEAEEKKIAEA 462
Query: 718 LDTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFR--SNT 891
K + I+ +M + S + +R LFR +
Sbjct: 463 RTMKLQEFQERLSLKDQLIAQSLLEKQQIYLEMAQLS-----GLEESAQNRGLFRGGGDP 517
Query: 892 EEALKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGG 1071
E L+G +++SA++E+E +EG V LPRRAETFGG
Sbjct: 518 SETLRGEQILRSAMSEIE-----GIQSLICQRHLGSTSSQVEEGSVS-AGLPRRAETFGG 571
Query: 1072 FDSHQMNASXXXXXXXXXXXQDLRRTE------------SDSGLKKG---GNANVVFMLK 1206
+DS + S DLR + D+ G + V M
Sbjct: 572 YDS-VGSPSKGGSFKRKVSNSDLRPQDWQGPASSPDSRPCDNSAPSGCCEESPQAVEMPS 630
Query: 1207 RNS------EQVVQSVIHLHELLSTLQGVVLQQDSYIEDQK--XXXXXXXXXXXASRPSS 1362
S ++V V L +LL +LQ V+ QQDSY+E Q+ ++R +
Sbjct: 631 TESLPTVLELELVHRVQTLSQLLLSLQAVIAQQDSYVEMQRTAIQEREKQFRLQSTRGNL 690
Query: 1363 LIEQEKQRSLEKQRQDLANLQRQQAQ 1440
L+EQE+QR+ EKQR++ A +++ Q+Q
Sbjct: 691 LLEQERQRNFEKQREERAGVEKLQSQ 716
>ref|NP_036156.2| rho-guanine nucleotide exchange factor [Mus musculus].
Length = 1700
Score = 248 bits (634), Expect = 1e-65
Identities = 126/243 (51%), Positives = 182/243 (74%), Gaps = 2/243 (0%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ F+K + S+ + RR GIPECILLVTQRITKYPVL +RILQ TK+ E DL +
Sbjct: 967 QNKKFQNFIKIRNSNLLARRRGIPECILLVTQRITKYPVLVERILQYTKERTEEHRDLCK 1026
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDL--KRKKLVR 360
+LGL+KD+I AV+ KV+ YEK + EI K ++K+ ++K+G +F K+ L + + L+
Sbjct: 1027 ALGLIKDMIAAVDLKVSEYEKNQKWLEILNKIENKTYTKLKNGHVFRKQALLSQERALLH 1086
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG V+ K+A GR K++ A+LLTD+L+FLQEKDQKYIFA++DQK +VISL+KLI REVA+E
Sbjct: 1087 DGLVYWKTATGRFKDILALLLTDVLLFLQEKDQKYIFAAVDQKPSVISLQKLIAREVANE 1146
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
E+G+FLIS PEM E+H +SKEERN+W++ IQ + + +E+ G SE++EE++
Sbjct: 1147 ERGMFLISASSAGPEMYEIHTNSKEERNNWMRRIQQAVESC-PEEEGGRTSESDEERRKA 1205
Query: 721 DTK 729
+ +
Sbjct: 1206 EAR 1208
>ref|NP_001185842.1| rho guanine nucleotide exchange factor 2 isoform 4 [Mus musculus].
Length = 956
Score = 246 bits (627), Expect = 9e-65
Identities = 176/487 (36%), Positives = 259/487 (53%), Gaps = 10/487 (2%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ + E E +DL
Sbjct: 328 YARDKRFQQFIRKMTRSAVLKRHGVQECILLVTQRITKYPVLINRILQNSHGVEEEYQDL 387
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
A +LGLVK+++ V+ V EK+ RL EIY + D ++ + F +++L R+KL+
Sbjct: 388 ASALGLVKELLSNVDQDVHELEKEARLQEIYNRMDPRAQTPVPGKGPFGRDELLRRKLIH 447
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
+G + K+A GR K+V +L+TD+LVFLQEKDQKYIF SLD K +V+SL+ LIVR++A++
Sbjct: 448 EGCLLWKTATGRFKDVLLLLMTDVLVFLQEKDQKYIFTSLD-KPSVVSLQNLIVRDIANQ 506
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
KG+FLIS G PEM EVHA+S+++R +WI++IQ ++ ED + E E++ +
Sbjct: 507 AKGMFLISSG--PPEMYEVHAASRDDRTTWIRVIQQSVRLCPSREDFPL-IETEDKAYLR 563
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMI-FRDMTECSTPLPEDCSPTHSSRILFRSNTEE 897
K + M+ F+ + +P P R LFR + E
Sbjct: 564 RIKTKLQQKNQALVELLQKNVELFAEMVHFQALKAGFVGMPPPALP----RGLFRLESFE 619
Query: 898 ALKGGPLMKSAINEVE--IXXXXXXXXXXXXXXXXXXXPTEQE-GMVGPVSLPRRAETFG 1068
+L+G L+K A+ EVE P + + G V+ A TF
Sbjct: 620 SLRGERLLKDALREVEGLKDLLLGPCVDLPMTSREPALPLDSDSGSCPGVTANGEARTFN 679
Query: 1069 GFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQSVIHL 1245
G +L R +SDS K + GN L+ E+V+Q +I+L
Sbjct: 680 G-------------------SIELCRADSDSSQKDRNGN-----QLRSPQEEVLQPLINL 715
Query: 1246 HELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSL-----EKQRQD 1410
+ LL LQ VV+QQ+ +E SR +S + + ++ EKQ +
Sbjct: 716 YGLLHGLQAVVVQQERLME--ALFPEGPERWEKLSRANSRDGEAGRAAVASVTPEKQATE 773
Query: 1411 LANLQRQ 1431
LA LQRQ
Sbjct: 774 LALLQRQ 780
>ref|NP_001185841.1| rho guanine nucleotide exchange factor 2 isoform 3 [Mus musculus].
Length = 958
Score = 246 bits (627), Expect = 9e-65
Identities = 176/487 (36%), Positives = 259/487 (53%), Gaps = 10/487 (2%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ + E E +DL
Sbjct: 330 YARDKRFQQFIRKMTRSAVLKRHGVQECILLVTQRITKYPVLINRILQNSHGVEEEYQDL 389
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
A +LGLVK+++ V+ V EK+ RL EIY + D ++ + F +++L R+KL+
Sbjct: 390 ASALGLVKELLSNVDQDVHELEKEARLQEIYNRMDPRAQTPVPGKGPFGRDELLRRKLIH 449
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
+G + K+A GR K+V +L+TD+LVFLQEKDQKYIF SLD K +V+SL+ LIVR++A++
Sbjct: 450 EGCLLWKTATGRFKDVLLLLMTDVLVFLQEKDQKYIFTSLD-KPSVVSLQNLIVRDIANQ 508
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
KG+FLIS G PEM EVHA+S+++R +WI++IQ ++ ED + E E++ +
Sbjct: 509 AKGMFLISSG--PPEMYEVHAASRDDRTTWIRVIQQSVRLCPSREDFPL-IETEDKAYLR 565
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMI-FRDMTECSTPLPEDCSPTHSSRILFRSNTEE 897
K + M+ F+ + +P P R LFR + E
Sbjct: 566 RIKTKLQQKNQALVELLQKNVELFAEMVHFQALKAGFVGMPPPALP----RGLFRLESFE 621
Query: 898 ALKGGPLMKSAINEVE--IXXXXXXXXXXXXXXXXXXXPTEQE-GMVGPVSLPRRAETFG 1068
+L+G L+K A+ EVE P + + G V+ A TF
Sbjct: 622 SLRGERLLKDALREVEGLKDLLLGPCVDLPMTSREPALPLDSDSGSCPGVTANGEARTFN 681
Query: 1069 GFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQSVIHL 1245
G +L R +SDS K + GN L+ E+V+Q +I+L
Sbjct: 682 G-------------------SIELCRADSDSSQKDRNGN-----QLRSPQEEVLQPLINL 717
Query: 1246 HELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSL-----EKQRQD 1410
+ LL LQ VV+QQ+ +E SR +S + + ++ EKQ +
Sbjct: 718 YGLLHGLQAVVVQQERLME--ALFPEGPERWEKLSRANSRDGEAGRAAVASVTPEKQATE 775
Query: 1411 LANLQRQ 1431
LA LQRQ
Sbjct: 776 LALLQRQ 782
>ref|NP_001185840.1| rho guanine nucleotide exchange factor 2 isoform 2 [Mus musculus].
Length = 968
Score = 246 bits (627), Expect = 9e-65
Identities = 176/487 (36%), Positives = 259/487 (53%), Gaps = 10/487 (2%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ + E E +DL
Sbjct: 340 YARDKRFQQFIRKMTRSAVLKRHGVQECILLVTQRITKYPVLINRILQNSHGVEEEYQDL 399
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
A +LGLVK+++ V+ V EK+ RL EIY + D ++ + F +++L R+KL+
Sbjct: 400 ASALGLVKELLSNVDQDVHELEKEARLQEIYNRMDPRAQTPVPGKGPFGRDELLRRKLIH 459
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
+G + K+A GR K+V +L+TD+LVFLQEKDQKYIF SLD K +V+SL+ LIVR++A++
Sbjct: 460 EGCLLWKTATGRFKDVLLLLMTDVLVFLQEKDQKYIFTSLD-KPSVVSLQNLIVRDIANQ 518
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
KG+FLIS G PEM EVHA+S+++R +WI++IQ ++ ED + E E++ +
Sbjct: 519 AKGMFLISSG--PPEMYEVHAASRDDRTTWIRVIQQSVRLCPSREDFPL-IETEDKAYLR 575
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMI-FRDMTECSTPLPEDCSPTHSSRILFRSNTEE 897
K + M+ F+ + +P P R LFR + E
Sbjct: 576 RIKTKLQQKNQALVELLQKNVELFAEMVHFQALKAGFVGMPPPALP----RGLFRLESFE 631
Query: 898 ALKGGPLMKSAINEVE--IXXXXXXXXXXXXXXXXXXXPTEQE-GMVGPVSLPRRAETFG 1068
+L+G L+K A+ EVE P + + G V+ A TF
Sbjct: 632 SLRGERLLKDALREVEGLKDLLLGPCVDLPMTSREPALPLDSDSGSCPGVTANGEARTFN 691
Query: 1069 GFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQSVIHL 1245
G +L R +SDS K + GN L+ E+V+Q +I+L
Sbjct: 692 G-------------------SIELCRADSDSSQKDRNGN-----QLRSPQEEVLQPLINL 727
Query: 1246 HELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSL-----EKQRQD 1410
+ LL LQ VV+QQ+ +E SR +S + + ++ EKQ +
Sbjct: 728 YGLLHGLQAVVVQQERLME--ALFPEGPERWEKLSRANSRDGEAGRAAVASVTPEKQATE 785
Query: 1411 LANLQRQ 1431
LA LQRQ
Sbjct: 786 LALLQRQ 792
>ref|NP_032513.3| rho guanine nucleotide exchange factor 2 isoform 1 [Mus musculus].
Length = 985
Score = 246 bits (627), Expect = 9e-65
Identities = 176/487 (36%), Positives = 259/487 (53%), Gaps = 10/487 (2%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K S+V++R G+ ECILLVTQRITKYPVL RILQ + E E +DL
Sbjct: 357 YARDKRFQQFIRKMTRSAVLKRHGVQECILLVTQRITKYPVLINRILQNSHGVEEEYQDL 416
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
A +LGLVK+++ V+ V EK+ RL EIY + D ++ + F +++L R+KL+
Sbjct: 417 ASALGLVKELLSNVDQDVHELEKEARLQEIYNRMDPRAQTPVPGKGPFGRDELLRRKLIH 476
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
+G + K+A GR K+V +L+TD+LVFLQEKDQKYIF SLD K +V+SL+ LIVR++A++
Sbjct: 477 EGCLLWKTATGRFKDVLLLLMTDVLVFLQEKDQKYIFTSLD-KPSVVSLQNLIVRDIANQ 535
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
KG+FLIS G PEM EVHA+S+++R +WI++IQ ++ ED + E E++ +
Sbjct: 536 AKGMFLISSG--PPEMYEVHAASRDDRTTWIRVIQQSVRLCPSREDFPL-IETEDKAYLR 592
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMI-FRDMTECSTPLPEDCSPTHSSRILFRSNTEE 897
K + M+ F+ + +P P R LFR + E
Sbjct: 593 RIKTKLQQKNQALVELLQKNVELFAEMVHFQALKAGFVGMPPPALP----RGLFRLESFE 648
Query: 898 ALKGGPLMKSAINEVE--IXXXXXXXXXXXXXXXXXXXPTEQE-GMVGPVSLPRRAETFG 1068
+L+G L+K A+ EVE P + + G V+ A TF
Sbjct: 649 SLRGERLLKDALREVEGLKDLLLGPCVDLPMTSREPALPLDSDSGSCPGVTANGEARTFN 708
Query: 1069 GFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVVQSVIHL 1245
G +L R +SDS K + GN L+ E+V+Q +I+L
Sbjct: 709 G-------------------SIELCRADSDSSQKDRNGN-----QLRSPQEEVLQPLINL 744
Query: 1246 HELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSL-----EKQRQD 1410
+ LL LQ VV+QQ+ +E SR +S + + ++ EKQ +
Sbjct: 745 YGLLHGLQAVVVQQERLME--ALFPEGPERWEKLSRANSRDGEAGRAAVASVTPEKQATE 802
Query: 1411 LANLQRQ 1431
LA LQRQ
Sbjct: 803 LALLQRQ 809
>ref|NP_001003912.1| rho guanine nucleotide exchange factor 11 [Mus musculus].
Length = 1552
Score = 102 bits (253), Expect = 2e-21
Identities = 59/235 (25%), Positives = 125/235 (53%), Gaps = 14/235 (5%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
K+ RFQ F+++ S RRL + + I+ QR+TKYP+L + I++ T +E E L +
Sbjct: 879 KESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLENIIKHTAGGTSEYEKLCR 938
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKS--GQMFAKEDLKRKKLVR 360
+ ++++ VN V E + RL + D+ ++ R + F DL +K++
Sbjct: 939 ARDQCREILKFVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIH 998
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIF--------ASLDQKST---VISL 507
+G + + + + ++Q +LL D++V LQ +++K + S D K T V+ L
Sbjct: 999 EGPLTWRISKDKTLDLQVLLLEDLVVLLQRQEEKLLLKCHSKTAVGSSDSKQTFSPVLKL 1058
Query: 508 KKLIVREVAHEEKGLFLI-SMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNR 669
+++R VA +++ F+I + + P++ E+ A + ++N W++++++ + +
Sbjct: 1059 NAVLIRSVATDKRAFFIICTSELGPPQIYELVALTSSDKNIWMELLEEAVQNATK 1113
>ref|NP_081420.2| rho guanine nucleotide exchange factor 12 [Mus musculus].
Length = 1544
Score = 99.0 bits (245), Expect = 2e-20
Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 21/256 (8%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
KD RF FV+ S+ + RRL + + I QR+TKYP+L I + T + E+E + +
Sbjct: 905 KDSRFHTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT-EWPPEREKVKK 963
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQM--FAKEDLKRKKLVR 360
+ + ++ VN V E K RL + + D+ ++ + + DL ++K++
Sbjct: 964 AADHCRQILNYVNQAVREAENKQRLEDYQRRLDTSNLKLSEYPNVDELRNLDLTKRKMIH 1023
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKD--------QKYIFASLDQKST---VISL 507
+G + K + ++ +LL DILV LQ++D K + ++ D K T VI L
Sbjct: 1024 EGPLVWKVNRDKSIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKL 1083
Query: 508 KKLIVREVAHEEKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGI 687
++VR+VA + K LF+ISM ++ E+ A + E+ W +I ++ + I
Sbjct: 1084 STVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQSTKPI 1143
Query: 688 P--------SENEEEK 711
P +N+EE+
Sbjct: 1144 PLPQPPPCEGDNDEEE 1159
>ref|NP_032514.1| rho guanine nucleotide exchange factor 1 isoform d [Mus musculus].
Length = 919
Score = 96.3 bits (238), Expect = 1e-19
Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 14/233 (6%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
K+ RF AFV++ S RRL + + I QR+TKYP+L Q I Q T++S E+ +
Sbjct: 530 KEPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEES-TERGKVEL 588
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQM---FAKEDLKRKKLV 357
+ ++++ VN V E +RL + + D + +R S M F D+ +KKLV
Sbjct: 589 AAECCREILHHVNQAVRDMEDLLRLKDYQRRLD-LTHLRQSSDPMLSEFKNLDITKKKLV 647
Query: 358 RDGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKST-----------VIS 504
+G + + + EV +LL D+L+ LQ +D++ + S + T V+
Sbjct: 648 HEGPLTWRVTKDKAIEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLR 707
Query: 505 LKKLIVREVAHEEKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTL 663
L + REVA + K ++I ++ ++ E+ A + ER +W +I +T +L
Sbjct: 708 LTSAMTREVATDHKAFYVIFTWDQEAQIYELVAQTSSERKNWCNLITETAGSL 760
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 83,303,166
Number of extensions: 2165698
Number of successful extensions: 8585
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8532
Number of HSP's successfully gapped: 15
Length of query: 929
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 818
Effective length of database: 12,283,563
Effective search space: 10047954534
Effective search space used: 10047954534
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013251
(2789 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006729.4| A-kinase anchor protein 13 isoform 1 [Homo sapi... 892 0.0
Alignment gi|NP_658913.1| A-kinase anchor protein 13 isoform 3 [Homo sapi... 892 0.0
Alignment gi|NP_009131.2| A-kinase anchor protein 13 isoform 2 [Homo sapi... 892 0.0
Alignment gi|NP_001124427.1| rho guanine nucleotide exchange factor 18 is... 287 4e-77
Alignment gi|NP_056133.2| rho guanine nucleotide exchange factor 18 isofo... 287 4e-77
Alignment gi|NP_001073948.2| rho-guanine nucleotide exchange factor isofo... 241 3e-63
Alignment gi|NP_001171164.1| rho-guanine nucleotide exchange factor isofo... 241 3e-63
Alignment gi|NP_001155856.1| rho guanine nucleotide exchange factor 2 iso... 234 4e-61
Alignment gi|NP_001155855.1| rho guanine nucleotide exchange factor 2 iso... 234 4e-61
Alignment gi|NP_004714.2| rho guanine nucleotide exchange factor 2 isofor... 234 4e-61
>ref|NP_006729.4| A-kinase anchor protein 13 isoform 1 [Homo sapiens].
Length = 2817
Score = 892 bits (2305), Expect = 0.0
Identities = 496/702 (70%), Positives = 516/702 (73%), Gaps = 10/702 (1%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKD+E EQEDL
Sbjct: 2119 YAKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQEDL 2178
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
AQSL LVKDVIGAV+SKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR
Sbjct: 2179 AQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 2238
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG VFLK+AAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE
Sbjct: 2239 DGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 2298
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKGLFLISMGM DPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML
Sbjct: 2299 EKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 2358
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 900
DT+AR MIFRDM ECSTPLPEDCSPTHS R+LFRSNTEEA
Sbjct: 2359 DTRARELKEQLHQKDQKILLLLEEKEMIFRDMAECSTPLPEDCSPTHSPRVLFRSNTEEA 2418
Query: 901 LKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDS 1080
LKGGPLMKSAINEVEI P EQ+ +VGPVSLPRRAETFGGFDS
Sbjct: 2419 LKGGPLMKSAINEVEILQGLVSGNLGGTLGPTVSSPIEQD-VVGPVSLPRRAETFGGFDS 2477
Query: 1081 HQMNASXXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLS 1260
HQMNAS QDLRRTESDSGLKKGGNAN+VFMLKRNSEQVVQSV+HL+ELLS
Sbjct: 2478 HQMNASKGGEKEEGDDGQDLRRTESDSGLKKGGNANLVFMLKRNSEQVVQSVVHLYELLS 2537
Query: 1261 TLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQ 1440
LQGVVLQQDSYIEDQK SRPSSLIEQEKQRSLEKQRQDLANLQ+QQAQ
Sbjct: 2538 ALQGVVLQQDSYIEDQKLVLSERALTRSLSRPSSLIEQEKQRSLEKQRQDLANLQKQQAQ 2597
Query: 1441 HLXXXXXXXXXXXXXXXALQEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXX 1620
+L L+ERE LA KGTYQ D
Sbjct: 2598 YLEEKRRREREWEARERELREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLER 2657
Query: 1621 XXXXXXXXXXXXXXXKR----------DRDACQVFHQHTKMMRIXXXXXXXXXXXXXXXX 1770
+R +RD CQV H HTK+MRI
Sbjct: 2658 LRAAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFFPSPEEPPSPSAP 2717
Query: 1771 XIAKSGSLDSELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTST 1950
IAKSGSLDSELSVSPKRNS+SRTHK+KG FHIL STSQT++ PEGQSQ P STS ST
Sbjct: 2718 SIAKSGSLDSELSVSPKRNSISRTHKDKGPFHILSSTSQTNKGPEGQSQAP--ASTSAST 2775
Query: 1951 RLFGLAXXXXXXXXXXXXXGSRSQPGDGPASEVSAEGEEIFC 2076
RLFGL SRSQPGDGPASEVSAEGEEIFC
Sbjct: 2776 RLFGLTKPKEKKEKKKKNKTSRSQPGDGPASEVSAEGEEIFC 2817
>ref|NP_658913.1| A-kinase anchor protein 13 isoform 3 [Homo sapiens].
Length = 1058
Score = 892 bits (2305), Expect = 0.0
Identities = 496/702 (70%), Positives = 516/702 (73%), Gaps = 10/702 (1%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKD+E EQEDL
Sbjct: 360 YAKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQEDL 419
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
AQSL LVKDVIGAV+SKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR
Sbjct: 420 AQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 479
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG VFLK+AAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE
Sbjct: 480 DGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 539
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKGLFLISMGM DPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML
Sbjct: 540 EKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 599
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 900
DT+AR MIFRDM ECSTPLPEDCSPTHS R+LFRSNTEEA
Sbjct: 600 DTRARELKEQLHQKDQKILLLLEEKEMIFRDMAECSTPLPEDCSPTHSPRVLFRSNTEEA 659
Query: 901 LKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDS 1080
LKGGPLMKSAINEVEI P EQ+ +VGPVSLPRRAETFGGFDS
Sbjct: 660 LKGGPLMKSAINEVEILQGLVSGNLGGTLGPTVSSPIEQD-VVGPVSLPRRAETFGGFDS 718
Query: 1081 HQMNASXXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLS 1260
HQMNAS QDLRRTESDSGLKKGGNAN+VFMLKRNSEQVVQSV+HL+ELLS
Sbjct: 719 HQMNASKGGEKEEGDDGQDLRRTESDSGLKKGGNANLVFMLKRNSEQVVQSVVHLYELLS 778
Query: 1261 TLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQ 1440
LQGVVLQQDSYIEDQK SRPSSLIEQEKQRSLEKQRQDLANLQ+QQAQ
Sbjct: 779 ALQGVVLQQDSYIEDQKLVLSERALTRSLSRPSSLIEQEKQRSLEKQRQDLANLQKQQAQ 838
Query: 1441 HLXXXXXXXXXXXXXXXALQEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXX 1620
+L L+ERE LA KGTYQ D
Sbjct: 839 YLEEKRRREREWEARERELREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLER 898
Query: 1621 XXXXXXXXXXXXXXXKR----------DRDACQVFHQHTKMMRIXXXXXXXXXXXXXXXX 1770
+R +RD CQV H HTK+MRI
Sbjct: 899 LRAAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFFPSPEEPPSPSAP 958
Query: 1771 XIAKSGSLDSELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTST 1950
IAKSGSLDSELSVSPKRNS+SRTHK+KG FHIL STSQT++ PEGQSQ P STS ST
Sbjct: 959 SIAKSGSLDSELSVSPKRNSISRTHKDKGPFHILSSTSQTNKGPEGQSQAP--ASTSAST 1016
Query: 1951 RLFGLAXXXXXXXXXXXXXGSRSQPGDGPASEVSAEGEEIFC 2076
RLFGL SRSQPGDGPASEVSAEGEEIFC
Sbjct: 1017 RLFGLTKPKEKKEKKKKNKTSRSQPGDGPASEVSAEGEEIFC 1058
>ref|NP_009131.2| A-kinase anchor protein 13 isoform 2 [Homo sapiens].
Length = 2813
Score = 892 bits (2305), Expect = 0.0
Identities = 496/702 (70%), Positives = 516/702 (73%), Gaps = 10/702 (1%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKD+E EQEDL
Sbjct: 2115 YAKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQEDL 2174
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
AQSL LVKDVIGAV+SKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR
Sbjct: 2175 AQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 2234
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG VFLK+AAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE
Sbjct: 2235 DGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 2294
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKGLFLISMGM DPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML
Sbjct: 2295 EKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 2354
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEA 900
DT+AR MIFRDM ECSTPLPEDCSPTHS R+LFRSNTEEA
Sbjct: 2355 DTRARELKEQLHQKDQKILLLLEEKEMIFRDMAECSTPLPEDCSPTHSPRVLFRSNTEEA 2414
Query: 901 LKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFGGFDS 1080
LKGGPLMKSAINEVEI P EQ+ +VGPVSLPRRAETFGGFDS
Sbjct: 2415 LKGGPLMKSAINEVEILQGLVSGNLGGTLGPTVSSPIEQD-VVGPVSLPRRAETFGGFDS 2473
Query: 1081 HQMNASXXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLS 1260
HQMNAS QDLRRTESDSGLKKGGNAN+VFMLKRNSEQVVQSV+HL+ELLS
Sbjct: 2474 HQMNASKGGEKEEGDDGQDLRRTESDSGLKKGGNANLVFMLKRNSEQVVQSVVHLYELLS 2533
Query: 1261 TLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQ 1440
LQGVVLQQDSYIEDQK SRPSSLIEQEKQRSLEKQRQDLANLQ+QQAQ
Sbjct: 2534 ALQGVVLQQDSYIEDQKLVLSERALTRSLSRPSSLIEQEKQRSLEKQRQDLANLQKQQAQ 2593
Query: 1441 HLXXXXXXXXXXXXXXXALQEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXX 1620
+L L+ERE LA KGTYQ D
Sbjct: 2594 YLEEKRRREREWEARERELREREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLER 2653
Query: 1621 XXXXXXXXXXXXXXXKR----------DRDACQVFHQHTKMMRIXXXXXXXXXXXXXXXX 1770
+R +RD CQV H HTK+MRI
Sbjct: 2654 LRAAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFFPSPEEPPSPSAP 2713
Query: 1771 XIAKSGSLDSELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTST 1950
IAKSGSLDSELSVSPKRNS+SRTHK+KG FHIL STSQT++ PEGQSQ P STS ST
Sbjct: 2714 SIAKSGSLDSELSVSPKRNSISRTHKDKGPFHILSSTSQTNKGPEGQSQAP--ASTSAST 2771
Query: 1951 RLFGLAXXXXXXXXXXXXXGSRSQPGDGPASEVSAEGEEIFC 2076
RLFGL SRSQPGDGPASEVSAEGEEIFC
Sbjct: 2772 RLFGLTKPKEKKEKKKKNKTSRSQPGDGPASEVSAEGEEIFC 2813
>ref|NP_001124427.1| rho guanine nucleotide exchange factor 18 isoform b [Homo sapiens].
Length = 1173
Score = 287 bits (734), Expect = 4e-77
Identities = 195/508 (38%), Positives = 283/508 (55%), Gaps = 30/508 (5%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ +KK + S+VRRLG+ ECILLVTQRITKYPVL +RI+Q T+ + EDL Q
Sbjct: 382 QNKKFQNLIKKIGNFSIVRRLGVQECILLVTQRITKYPVLVERIIQNTEAGTEDYEDLTQ 441
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDG 366
+L L+KD+I V++KV+ EK RL EI K D KS ++K+G F KED+ +++L +G
Sbjct: 442 ALNLIKDIISQVDAKVSECEKGQRLREIAGKMDLKSSSKLKNGLTFRKEDMLQRQLHLEG 501
Query: 367 GVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEK 546
+ K+ +GRLK++ A+LLTD+L+ LQEKDQKY+FAS+D K VISL+KLIVREVA+EEK
Sbjct: 502 MLCWKTTSGRLKDILAILLTDVLLLLQEKDQKYVFASVDSKPPVISLQKLIVREVANEEK 561
Query: 547 GLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKMLD- 723
+FLIS ++ PEM E++ SSKE+RN+W+ IQ + + DE+EG S EEE+K+++
Sbjct: 562 AMFLISASLQGPEMYEIYTSSKEDRNAWMAHIQRAVESC-PDEEEGPFSLPEEERKVVEA 620
Query: 724 --TKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECS--TPLPEDCSPTHSSRILFR-SN 888
T+ R I+ +M E LP+ R LFR +
Sbjct: 621 RATRLRDFQERLSMKDQLIAQSLLEKQQIYLEMAEMGGLEDLPQ-------PRGLFRGGD 673
Query: 889 TEEALKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFG 1068
E L+G ++KSA++E+E + GP PRRAETF
Sbjct: 674 PSETLQGELILKSAMSEIE----GIQSLICRQLGSANGQAEDGGSSTGP---PRRAETFA 726
Query: 1069 GFD---SHQMNAS----------XXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKR 1209
G+D S N S DL+ ++SD + VV
Sbjct: 727 GYDCTNSPTKNGSFKKKVSSTDPRPRDWRGPPNSPDLKLSDSDIPGSSEESPQVVEAPGT 786
Query: 1210 NSE---------QVVQSVIHLHELLSTLQGVVLQQDSYIEDQK--XXXXXXXXXXXASRP 1356
S+ ++VQ + L +LL LQ V+ QDSY+E Q+ ++R
Sbjct: 787 ESDPRLPTVLESELVQRIQTLSQLLLNLQAVIAHQDSYVETQRAAIQEREKQFRLQSTRG 846
Query: 1357 SSLIEQEKQRSLEKQRQDLANLQRQQAQ 1440
+ L+EQE+QR+ EKQR++ A L++ Q+Q
Sbjct: 847 NLLLEQERQRNFEKQREERAALEKLQSQ 874
>ref|NP_056133.2| rho guanine nucleotide exchange factor 18 isoform a [Homo sapiens].
Length = 1015
Score = 287 bits (734), Expect = 4e-77
Identities = 195/508 (38%), Positives = 283/508 (55%), Gaps = 30/508 (5%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ +KK + S+VRRLG+ ECILLVTQRITKYPVL +RI+Q T+ + EDL Q
Sbjct: 224 QNKKFQNLIKKIGNFSIVRRLGVQECILLVTQRITKYPVLVERIIQNTEAGTEDYEDLTQ 283
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDG 366
+L L+KD+I V++KV+ EK RL EI K D KS ++K+G F KED+ +++L +G
Sbjct: 284 ALNLIKDIISQVDAKVSECEKGQRLREIAGKMDLKSSSKLKNGLTFRKEDMLQRQLHLEG 343
Query: 367 GVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEK 546
+ K+ +GRLK++ A+LLTD+L+ LQEKDQKY+FAS+D K VISL+KLIVREVA+EEK
Sbjct: 344 MLCWKTTSGRLKDILAILLTDVLLLLQEKDQKYVFASVDSKPPVISLQKLIVREVANEEK 403
Query: 547 GLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKMLD- 723
+FLIS ++ PEM E++ SSKE+RN+W+ IQ + + DE+EG S EEE+K+++
Sbjct: 404 AMFLISASLQGPEMYEIYTSSKEDRNAWMAHIQRAVESC-PDEEEGPFSLPEEERKVVEA 462
Query: 724 --TKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECS--TPLPEDCSPTHSSRILFR-SN 888
T+ R I+ +M E LP+ R LFR +
Sbjct: 463 RATRLRDFQERLSMKDQLIAQSLLEKQQIYLEMAEMGGLEDLPQ-------PRGLFRGGD 515
Query: 889 TEEALKGGPLMKSAINEVEIXXXXXXXXXXXXXXXXXXXPTEQEGMVGPVSLPRRAETFG 1068
E L+G ++KSA++E+E + GP PRRAETF
Sbjct: 516 PSETLQGELILKSAMSEIE----GIQSLICRQLGSANGQAEDGGSSTGP---PRRAETFA 568
Query: 1069 GFD---SHQMNAS----------XXXXXXXXXXXQDLRRTESDSGLKKGGNANVVFMLKR 1209
G+D S N S DL+ ++SD + VV
Sbjct: 569 GYDCTNSPTKNGSFKKKVSSTDPRPRDWRGPPNSPDLKLSDSDIPGSSEESPQVVEAPGT 628
Query: 1210 NSE---------QVVQSVIHLHELLSTLQGVVLQQDSYIEDQK--XXXXXXXXXXXASRP 1356
S+ ++VQ + L +LL LQ V+ QDSY+E Q+ ++R
Sbjct: 629 ESDPRLPTVLESELVQRIQTLSQLLLNLQAVIAHQDSYVETQRAAIQEREKQFRLQSTRG 688
Query: 1357 SSLIEQEKQRSLEKQRQDLANLQRQQAQ 1440
+ L+EQE+QR+ EKQR++ A L++ Q+Q
Sbjct: 689 NLLLEQERQRNFEKQREERAALEKLQSQ 716
>ref|NP_001073948.2| rho-guanine nucleotide exchange factor isoform 1 [Homo sapiens].
Length = 1731
Score = 241 bits (614), Expect = 3e-63
Identities = 124/243 (51%), Positives = 179/243 (73%), Gaps = 2/243 (0%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ F+K + S+ + RR GIPECILLVTQRITKYPVL +RILQ TK+ E +DL +
Sbjct: 970 QNKKFQNFIKLRNSNLLARRRGIPECILLVTQRITKYPVLVERILQYTKERTEEHKDLRK 1029
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDL--KRKKLVR 360
+L L+KD+I V+ KV YEK + EI K ++K+ ++K+G +F K+ L + + L+
Sbjct: 1030 ALCLIKDMIATVDLKVNEYEKNQKWLEILNKIENKTYTKLKNGHVFRKQALMSEERTLLY 1089
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG V+ K+A GR K++ A+LLTD+L+FLQEKDQKYIFA++DQK +VISL+KLI REVA+E
Sbjct: 1090 DGLVYWKTATGRFKDILALLLTDVLLFLQEKDQKYIFAAVDQKPSVISLQKLIAREVANE 1149
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
E+G+FLIS PEM E+H +SKEERN+W++ IQ + + +E G SE++E+K+
Sbjct: 1150 ERGMFLISASSAGPEMYEIHTNSKEERNNWMRRIQQAVESC-PEEKGGRTSESDEDKRKA 1208
Query: 721 DTK 729
+ +
Sbjct: 1209 EAR 1211
>ref|NP_001171164.1| rho-guanine nucleotide exchange factor isoform 2 [Homo sapiens].
Length = 1705
Score = 241 bits (614), Expect = 3e-63
Identities = 124/243 (51%), Positives = 179/243 (73%), Gaps = 2/243 (0%)
Frame = +1
Query: 7 KDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQ 186
++K+FQ F+K + S+ + RR GIPECILLVTQRITKYPVL +RILQ TK+ E +DL +
Sbjct: 970 QNKKFQNFIKLRNSNLLARRRGIPECILLVTQRITKYPVLVERILQYTKERTEEHKDLRK 1029
Query: 187 SLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDL--KRKKLVR 360
+L L+KD+I V+ KV YEK + EI K ++K+ ++K+G +F K+ L + + L+
Sbjct: 1030 ALCLIKDMIATVDLKVNEYEKNQKWLEILNKIENKTYTKLKNGHVFRKQALMSEERTLLY 1089
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG V+ K+A GR K++ A+LLTD+L+FLQEKDQKYIFA++DQK +VISL+KLI REVA+E
Sbjct: 1090 DGLVYWKTATGRFKDILALLLTDVLLFLQEKDQKYIFAAVDQKPSVISLQKLIAREVANE 1149
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
E+G+FLIS PEM E+H +SKEERN+W++ IQ + + +E G SE++E+K+
Sbjct: 1150 ERGMFLISASSAGPEMYEIHTNSKEERNNWMRRIQQAVESC-PEEKGGRTSESDEDKRKA 1208
Query: 721 DTK 729
+ +
Sbjct: 1209 EAR 1211
>ref|NP_001155856.1| rho guanine nucleotide exchange factor 2 isoform 2 [Homo sapiens].
Length = 985
Score = 234 bits (596), Expect = 4e-61
Identities = 174/495 (35%), Positives = 255/495 (51%), Gaps = 16/495 (3%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K +V++R G+ ECILLVTQRITKYP+L RILQ + E E++DL
Sbjct: 355 YARDKRFQQFIRKVTRPAVLKRHGVQECILLVTQRITKYPLLISRILQHSHGIEEERQDL 414
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
+LGLVK+++ V+ + EK RL EIY + D ++ + F +E+L R+KL+
Sbjct: 415 TTALGLVKELLSNVDEGIYQLEKGARLQEIYNRMDPRAQTPVPGKGPFGREELLRRKLIH 474
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG + K+A GR K+V +L+TD+LVFLQEKDQKYIF +LD K +V+SL+ LIVR++A++
Sbjct: 475 DGCLLWKTATGRFKDVLVLLMTDVLVFLQEKDQKYIFPTLD-KPSVVSLQNLIVRDIANQ 533
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKG+FLIS PEM EVH +S+++R++WI++IQ ++ T ED + E E+E +
Sbjct: 534 EKGMFLISAA--PPEMYEVHTASRDDRSTWIRVIQQSVRTCPSREDFPL-IETEDEAYLR 590
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPED-----CSPTHSSRILFRS 885
K +F +MT ED PT R LFRS
Sbjct: 591 RIKMELQQKDRALVELLREKVG-----LFAEMTHFQA--EEDGGSGMALPT-LPRGLFRS 642
Query: 886 NTEEALKGGPLMKSAINEVE----IXXXXXXXXXXXXXXXXXXXPTEQEGMVGP-VSLPR 1050
+ E+ +G L++ AI EVE + + G P V+
Sbjct: 643 ESLESPRGERLLQDAIREVEGLKDLLVGPGVELLLTPREPALPLEPDSGGNTSPGVTANG 702
Query: 1051 RAETFGGFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVV 1227
A TF G +L R +SDS + + GN L+ E+ +
Sbjct: 703 EARTFNG-------------------SIELCRADSDSSQRDRNGN-----QLRSPQEEAL 738
Query: 1228 QSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSL----- 1392
Q +++L+ LL LQ V QQD+ +E + R +S + +
Sbjct: 739 QRLVNLYGLLHGLQAAVAQQDTLMEAR--FPEGPERREKLCRANSRDGEAGRAGAAPVAP 796
Query: 1393 EKQRQDLANLQRQQA 1437
EKQ +LA LQRQ A
Sbjct: 797 EKQATELALLQRQHA 811
>ref|NP_001155855.1| rho guanine nucleotide exchange factor 2 isoform 1 [Homo sapiens].
Length = 986
Score = 234 bits (596), Expect = 4e-61
Identities = 174/495 (35%), Positives = 255/495 (51%), Gaps = 16/495 (3%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K +V++R G+ ECILLVTQRITKYP+L RILQ + E E++DL
Sbjct: 356 YARDKRFQQFIRKVTRPAVLKRHGVQECILLVTQRITKYPLLISRILQHSHGIEEERQDL 415
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
+LGLVK+++ V+ + EK RL EIY + D ++ + F +E+L R+KL+
Sbjct: 416 TTALGLVKELLSNVDEGIYQLEKGARLQEIYNRMDPRAQTPVPGKGPFGREELLRRKLIH 475
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG + K+A GR K+V +L+TD+LVFLQEKDQKYIF +LD K +V+SL+ LIVR++A++
Sbjct: 476 DGCLLWKTATGRFKDVLVLLMTDVLVFLQEKDQKYIFPTLD-KPSVVSLQNLIVRDIANQ 534
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKG+FLIS PEM EVH +S+++R++WI++IQ ++ T ED + E E+E +
Sbjct: 535 EKGMFLISAA--PPEMYEVHTASRDDRSTWIRVIQQSVRTCPSREDFPL-IETEDEAYLR 591
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPED-----CSPTHSSRILFRS 885
K +F +MT ED PT R LFRS
Sbjct: 592 RIKMELQQKDRALVELLREKVG-----LFAEMTHFQA--EEDGGSGMALPT-LPRGLFRS 643
Query: 886 NTEEALKGGPLMKSAINEVE----IXXXXXXXXXXXXXXXXXXXPTEQEGMVGP-VSLPR 1050
+ E+ +G L++ AI EVE + + G P V+
Sbjct: 644 ESLESPRGERLLQDAIREVEGLKDLLVGPGVELLLTPREPALPLEPDSGGNTSPGVTANG 703
Query: 1051 RAETFGGFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVV 1227
A TF G +L R +SDS + + GN L+ E+ +
Sbjct: 704 EARTFNG-------------------SIELCRADSDSSQRDRNGN-----QLRSPQEEAL 739
Query: 1228 QSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSL----- 1392
Q +++L+ LL LQ V QQD+ +E + R +S + +
Sbjct: 740 QRLVNLYGLLHGLQAAVAQQDTLMEAR--FPEGPERREKLCRANSRDGEAGRAGAAPVAP 797
Query: 1393 EKQRQDLANLQRQQA 1437
EKQ +LA LQRQ A
Sbjct: 798 EKQATELALLQRQHA 812
>ref|NP_004714.2| rho guanine nucleotide exchange factor 2 isoform 3 [Homo sapiens].
Length = 958
Score = 234 bits (596), Expect = 4e-61
Identities = 174/495 (35%), Positives = 255/495 (51%), Gaps = 16/495 (3%)
Frame = +1
Query: 1 YTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDL 180
Y +DKRFQ F++K +V++R G+ ECILLVTQRITKYP+L RILQ + E E++DL
Sbjct: 328 YARDKRFQQFIRKVTRPAVLKRHGVQECILLVTQRITKYPLLISRILQHSHGIEEERQDL 387
Query: 181 AQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVR 360
+LGLVK+++ V+ + EK RL EIY + D ++ + F +E+L R+KL+
Sbjct: 388 TTALGLVKELLSNVDEGIYQLEKGARLQEIYNRMDPRAQTPVPGKGPFGREELLRRKLIH 447
Query: 361 DGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE 540
DG + K+A GR K+V +L+TD+LVFLQEKDQKYIF +LD K +V+SL+ LIVR++A++
Sbjct: 448 DGCLLWKTATGRFKDVLVLLMTDVLVFLQEKDQKYIFPTLD-KPSVVSLQNLIVRDIANQ 506
Query: 541 EKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKML 720
EKG+FLIS PEM EVH +S+++R++WI++IQ ++ T ED + E E+E +
Sbjct: 507 EKGMFLISAA--PPEMYEVHTASRDDRSTWIRVIQQSVRTCPSREDFPL-IETEDEAYLR 563
Query: 721 DTKARXXXXXXXXXXXXXXXXXXXXXMIFRDMTECSTPLPED-----CSPTHSSRILFRS 885
K +F +MT ED PT R LFRS
Sbjct: 564 RIKMELQQKDRALVELLREKVG-----LFAEMTHFQA--EEDGGSGMALPT-LPRGLFRS 615
Query: 886 NTEEALKGGPLMKSAINEVE----IXXXXXXXXXXXXXXXXXXXPTEQEGMVGP-VSLPR 1050
+ E+ +G L++ AI EVE + + G P V+
Sbjct: 616 ESLESPRGERLLQDAIREVEGLKDLLVGPGVELLLTPREPALPLEPDSGGNTSPGVTANG 675
Query: 1051 RAETFGGFDSHQMNASXXXXXXXXXXXQDLRRTESDSGLK-KGGNANVVFMLKRNSEQVV 1227
A TF G +L R +SDS + + GN L+ E+ +
Sbjct: 676 EARTFNG-------------------SIELCRADSDSSQRDRNGN-----QLRSPQEEAL 711
Query: 1228 QSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXXASRPSSLIEQEKQRSL----- 1392
Q +++L+ LL LQ V QQD+ +E + R +S + +
Sbjct: 712 QRLVNLYGLLHGLQAAVAQQDTLMEAR--FPEGPERREKLCRANSRDGEAGRAGAAPVAP 769
Query: 1393 EKQRQDLANLQRQQA 1437
EKQ +LA LQRQ A
Sbjct: 770 EKQATELALLQRQHA 784
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 98,000,321
Number of extensions: 2568379
Number of successful extensions: 10125
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 10064
Number of HSP's successfully gapped: 22
Length of query: 929
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 817
Effective length of database: 14,605,196
Effective search space: 11932445132
Effective search space used: 11932445132
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013251
(2789 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1197 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1197 bits (604), Expect = 0.0
Identities = 625/628 (99%), Gaps = 3/628 (0%)
Strand = Plus / Plus
Query: 2029 gatggccctgcctcggaagtatccgcagagggggaagagatcttctgctgacctgctcct 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94578470 gatggccctgcctcggaagtatccgcagagggggaagagatcttctgctgacctgctcct 94578529
Query: 2089 ctgctgaggcagctgcctcccatcccagccagcggctgcagccccgcctcctgctgtcct 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94578530 ctgctgaggcagctgcctcccatcccagccagcggctgcagccccgcctcctgctgtcct 94578589
Query: 2149 ttgtgcacactctccgacactgatgccccagctccagcatccagccctgccacgctgccc 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94578590 ttgtgcacactctccgacactgatgccccagctccagcatccagccctgccacgctgccc 94578649
Query: 2209 caggtcctgggccagagcagcacattgtcttggggatcagggtggggaaggaggcccggg 2268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94578650 caggtcctgggccagagcagcacattgtcttggggatcagggtggggaaggaggcccggg 94578709
Query: 2269 actggcaacccaacaacttgtgggttggggccggccctactgaggatgttacaccgagag 2328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94578710 actggcaacccaacaacttgtgggttggggccggccctactgaggatgttacaccgagag 94578769
Query: 2329 tagtggccccagaagtccaggcagtggttttggacaggaattcccagaggctgaaagtgt 2388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94578770 tagtggccccagaagtccaggcagtggttttggacaggaattcccagaggctgaaagtgt 94578829
Query: 2389 ttccaaatgaggtctgaactctgattgccttttattttggggaacagaaccaaaaatcca 2448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94578830 ttccaaatgaggtctgaactctgattgccttttattttggggaacagaaccaaaaatcca 94578889
Query: 2449 acagcagagagtttgaactttacctaaatgtgtacaagaacccgtctgcatatacagggg 2508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94578890 acagcagagagtttgaactttacctaaatgtgtacaagaacccgtctgcatatacagggg 94578949
Query: 2509 tacgcggaactgcacaggtctgtcccagacgcctggcaggctcagctgtgcgcaaggggc 2568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94578950 tacgcggaactgcacaggtctgtcccagacgcctggcaggctcagctgtgcgcaaggggc 94579009
Query: 2569 gctgcccagcaccagtcagggaacgaggctcggagactcaccccctggtcct-caggctg 2627
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 94579010 gctgcccagcaccagtcagggaacgaggctcggagactcaccccctggtcctccaggctg 94579069
Query: 2628 tctccctgt-aaccca-cctgtgcactc 2653
||||||||| |||||| |||||||||||
Sbjct: 94579070 tctccctgtaaacccaccctgtgcactc 94579097
Score = 839 bits (423), Expect = 0.0
Identities = 426/427 (99%)
Strand = Plus / Plus
Query: 1265 tgcagggtgtggtgctgcaacaagacagctacatcgaggaccagaagctgctgctgactg 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575673 tgcagggtgtggtgctgcaacaagacagctacatcgaggaccagaagctgctgctgactg 94575732
Query: 1325 agcggacgctcacacggacggcatcccggcccagctccctcatcgagcaggagaagcagc 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575733 agcggacgctcacacggacggcatcccggcccagctccctcatcgagcaggagaagcagc 94575792
Query: 1385 gcagcctggagaagcagcgccaggacctggccaacctgcagaggcagcaggcgcagcacc 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575793 gcagcctggagaagcagcgccaggacctggccaacctgcagaggcagcaggcgcagcacc 94575852
Query: 1445 tggaggagaagcggcggcgggagcgcgagtgggaggcccgcgacagggcgctgcaggagc 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575853 tggaggagaagcggcggcgggagcgcgagtgggaggcccgcgacagggcgctgcaggagc 94575912
Query: 1505 gcgaggtgcggctggcgcagcgcgaggacgagctgcggcgaggccgccaagacctggagc 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575913 gcgaggtgcggctggcgcagcgcgaggacgagctgcggcgaggccgccaagacctggagc 94575972
Query: 1565 gcgagcgggaggagctgcagcagaggaagggcacctaccagagcgacctggagcgcctgc 1624
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 94575973 gcgagcgggaggagctgcagcagaggaagggcacctaccagagcgatctggagcgcctgc 94576032
Query: 1625 gcgccgcccagaggcagctcgagcgcgagcaggagcagctgaagcgcgaccgcgacgcct 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94576033 gcgccgcccagaggcagctcgagcgcgagcaggagcagctgaagcgcgaccgcgacgcct 94576092
Query: 1685 gccaggt 1691
|||||||
Sbjct: 94576093 gccaggt 94576099
Score = 630 bits (318), Expect = e-178
Identities = 335/343 (97%)
Strand = Plus / Plus
Query: 1687 caggttttccatcaacacaccaagatgatgagaatcccatccttctcacccagtcctgag 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94577318 caggttttccatcaacacaccaagatgatgagaatcccatccttctcacccagtcctgag 94577377
Query: 1747 gaggcccccttgccatctgcaccttcaatagccaaatcagggtcattggactcagaactc 1806
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94577378 gaggcccccttgccatctgtaccttcaatagccaaatcagggtcattggactcagaactc 94577437
Query: 1807 tcagtgtcccccaaaaggaacagcctctctcggacacacaaagaaaaggggacttttcac 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94577438 tcagtgtcccccaaaaggaacagcctctctcggacacacaaagaaaaggggacttttcac 94577497
Query: 1867 atactgggttccacaagccagacaagcagaataccagagggtcagagccagacgccagtc 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94577498 atactgggttccacaagccagacaagcagaataccagagggtcagagccagacgccagtc 94577557
Query: 1927 tgcacctccacatccacctccacccgcctgtttgggttagccaagccaaaggagaagaag 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94577558 tgcacctccacatccacctccacccgcctgtttgggttagccaagccaaaggagaagaag 94577617
Query: 1987 gnnnnnnngaagaagagcaaaggaagccgctcgcagcccggtg 2029
| |||||||||||||||||||||||||||||||||||
Sbjct: 94577618 gaaaaaaagaagaagagcaaaggaagccgctcgcagcccggtg 94577660
Score = 498 bits (251), Expect = e-138
Identities = 251/251 (100%)
Strand = Plus / Plus
Query: 153 agacagtgaagcagagcaggaagatctggctcagtccctgggcctggtgaaggatgtgat 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94560446 agacagtgaagcagagcaggaagatctggctcagtccctgggcctggtgaaggatgtgat 94560505
Query: 213 tggagctgtgaacagcaaagtggcaagttatgaaaagaaagtccgtctcaatgagattta 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94560506 tggagctgtgaacagcaaagtggcaagttatgaaaagaaagtccgtctcaatgagattta 94560565
Query: 273 tacgaagacagatagcaagtcgatcatgaggatgaagagtggtcagatgtttgccaagga 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94560566 tacgaagacagatagcaagtcgatcatgaggatgaagagtggtcagatgtttgccaagga 94560625
Query: 333 ggatctgaagcggaagaagcttgtgcgggatgggggcgtgtttctgaagagtgcggcagg 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94560626 ggatctgaagcggaagaagcttgtgcgggatgggggcgtgtttctgaagagtgcggcagg 94560685
Query: 393 aaggttgaaag 403
|||||||||||
Sbjct: 94560686 aaggttgaaag 94560696
Score = 383 bits (193), Expect = e-103
Identities = 196/197 (99%)
Strand = Plus / Plus
Query: 744 agagcaacttcaacaaaaggatcaacagatcctgcttttactggaagagaaggagatgat 803
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 94567551 agagcaacttcaacaaaaggaccaacagatcctgcttttactggaagagaaggagatgat 94567610
Query: 804 tttccgggacatgactgagtgcagcactcctttgccagaggattgctccccaacacacag 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94567611 tttccgggacatgactgagtgcagcactcctttgccagaggattgctccccaacacacag 94567670
Query: 864 ctctagaatcctctttcgctccaacacagaagaggctctcaaaggaggaccattaatgaa 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94567671 ctctagaatcctctttcgctccaacacagaagaggctctcaaaggaggaccattaatgaa 94567730
Query: 924 aagtgcaataaatgagg 940
|||||||||||||||||
Sbjct: 94567731 aagtgcaataaatgagg 94567747
Score = 365 bits (184), Expect = 9e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 480 ggaccagaaatcaacagtgatctctttgaagaaactgattgtaagagaagtggcacatga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94564447 ggaccagaaatcaacagtgatctctttgaagaaactgattgtaagagaagtggcacatga 94564506
Query: 540 ggagaaaggtttatttctgatcagtatggggatgaaagatccagagatggtggaagtcca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94564507 ggagaaaggtttatttctgatcagtatggggatgaaagatccagagatggtggaagtcca 94564566
Query: 600 tgccagctccaaagaggagcggaacagctggattcagatcatccaggacacaatcaacac 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94564567 tgccagctccaaagaggagcggaacagctggattcagatcatccaggacacaatcaacac 94564626
Query: 660 cctg 663
||||
Sbjct: 94564627 cctg 94564630
Score = 327 bits (165), Expect = 2e-86
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 940 gtggagatccttcagagtttggtgagtggaagcctgggaggcacccttgggcagactgtg 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94570972 gtggagatccttcagagtttggtgagtggaagcctgggaggcacccttgggcagactgtg 94571031
Query: 1000 agcagccctactgagcaagaaggcatggtgggccctgtttccctgccccggagagcagag 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94571032 agcagccctactgagcaagaaggcatggtgggccctgtttccctgccccggagagcagag 94571091
Query: 1060 acctttggagggtttgacagccatcagatgaatgcttcaaaaggt 1104
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94571092 acctttggagggtttgacagccatcagatgaatgcttcaaaaggt 94571136
Score = 238 bits (120), Expect = 1e-59
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 35 agaagaagatgagcagttccgtcgtacggcggctcggcatcccagagtgcatattgcttg 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94559392 agaagaagatgagcagttccgtcgtacggcggctcggcatcccagagtgcatattgcttg 94559451
Query: 95 tgacccagcggatcaccaaatacccggttttgttccaaagaatattgcagtgtaccaaag 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94559452 tgacccagcggatcaccaaatacccggttttgttccaaagaatattgcagtgtaccaaag 94559511
Score = 165 bits (83), Expect = 2e-37
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 663 gaacagagatgaagatgaaggaattcctagtgagaatgaggaagaaaagaaaatgttgga 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94564750 gaacagagatgaagatgaaggaattcctagtgagaatgaggaagaaaagaaaatgttgga 94564809
Query: 723 caccaaagcccgggagttaaaag 745
|||||||||||||||||||||||
Sbjct: 94564810 caccaaagcccgggagttaaaag 94564832
Score = 159 bits (80), Expect = 1e-35
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 402 agaggttcaagcggtcctgcttactgacattttagttttccttcaagaaaaagaccagaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94563772 agaggttcaagcggtcctgcttactgacattttagttttccttcaagaaaaagaccagaa 94563831
Query: 462 atacatctttgcgtcactgg 481
||||||||||||||||||||
Sbjct: 94563832 atacatctttgcgtcactgg 94563851
Score = 139 bits (70), Expect = 9e-30
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 1101 aggtggtgaaaaggaagagggagatgatggccaagatcttaggagaacagaatcggacag 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94571571 aggtggtgaaaaggaagagggagatgatggccaagatcttaggagaacagaatcggacag 94571630
Query: 1161 tggtttgaaaaagg 1174
|||| |||||||||
Sbjct: 94571631 tggtctgaaaaagg 94571644
Score = 107 bits (54), Expect = 3e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1217 agcaggtcgtccagagcgtcatccatctccacgagctcctcagcactttgcagg 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94574918 agcaggtcgtccagagcgtcatccatctccacgagctcctcagcactttgcagg 94574971
Score = 93.7 bits (47), Expect = 5e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 1172 agggtggaaatgctaacgtggtatttatgcttaaaagaaacagtgag 1218
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94572083 agggtggaaatgctaacgtggtatttatgcttaaaagaaacagtgag 94572129
Score = 63.9 bits (32), Expect = 4e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 tataccaaggataagcgttttcaggccttcgt 32
||||||||||||||||||||||||||||||||
Sbjct: 94559242 tataccaaggataagcgttttcaggccttcgt 94559273
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 85,619,088
Number of extensions: 685
Number of successful extensions: 685
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 14
Length of query: 2789
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2767
Effective length of database: 2,808,408,574
Effective search space: 7770866524258
Effective search space used: 7770866524258
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)