Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013252
(1007 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002696577.1| PREDICTED: A kinase (PRKA) anchor protein 13... 271 5e-73
Alignment gi|XP_001787994.1| PREDICTED: A-kinase anchor protein 13 [Bos t... 178 6e-45
Alignment gi|XP_002688879.1| PREDICTED: Rho guanine nucleotide exchange f... 57 2e-08
Alignment gi|XP_600806.5| PREDICTED: Rho/Rac guanine nucleotide exchange ... 57 2e-08
>ref|XP_002696577.1| PREDICTED: A kinase (PRKA) anchor protein 13 [Bos taurus].
Length = 2637
Score = 271 bits (694), Expect = 5e-73
Identities = 160/277 (57%), Positives = 174/277 (62%), Gaps = 1/277 (0%)
Frame = +1
Query: 37 LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXX 216
LRRTESDSGLKKGGNAN+VFM KRNSEQV+QSV+HLHELLSTLQGVVLQQDSYIEDQK
Sbjct: 2328 LRRTESDSGLKKGGNANLVFMHKRNSEQVIQSVVHLHELLSTLQGVVLQQDSYIEDQKLL 2387
Query: 217 XXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLXXXXXXXXXXXXXXXAL 396
ASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQH AL
Sbjct: 2388 LSERALTRTASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHQEEKRRHEREWESRERAL 2447
Query: 397 QEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXXXXXXXXXXXXXXXXXKRDR 576
QERE RLA KG YQ D +RD
Sbjct: 2448 QEREARLAQREDELRRSCQDLEREREELQQRKGAYQGDLERLRAAQRQLEREQEQLRRDS 2507
Query: 577 D-ACQVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRNSLSRTHKEK 753
+ QV +Q+TK++RI IAKSGSLDSELSVSPKRNS+SRTHKEK
Sbjct: 2508 ERLSQVSYQNTKLLRIPSFSPNPEETPSPPAPSIAKSGSLDSELSVSPKRNSISRTHKEK 2567
Query: 754 GTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGV 864
G FH+L S SQT++ PE QSQTPV STSTRLFG+
Sbjct: 2568 GPFHMLSSASQTNKAPEAQSQTPV----STSTRLFGL 2600
>ref|XP_001787994.1| PREDICTED: A-kinase anchor protein 13 [Bos taurus].
Length = 1017
Score = 178 bits (452), Expect = 6e-45
Identities = 101/158 (63%), Positives = 104/158 (65%)
Frame = +1
Query: 37 LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXX 216
LRRTESDSGLKKGGNAN+VFM KRNSEQV+QSV+HLHELLSTLQGVVLQQDSYIEDQK
Sbjct: 587 LRRTESDSGLKKGGNANLVFMHKRNSEQVIQSVVHLHELLSTLQGVVLQQDSYIEDQKLL 646
Query: 217 XXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLXXXXXXXXXXXXXXXAL 396
ASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQH AL
Sbjct: 647 LSERALTRTASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHQEEKRRHEREWESRERAL 706
Query: 397 QEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSD 510
QERE RLA KG YQ D
Sbjct: 707 QEREARLAQREDELRRSCQDLEREREELQQRKGAYQGD 744
Score = 104 bits (260), Expect = 1e-22
Identities = 57/93 (61%), Positives = 66/93 (70%)
Frame = +1
Query: 586 QVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRNSLSRTHKEKGTFH 765
QV +Q+TK++RI IAKSGSLDSELSVSPKRNS+SRTHKEKG FH
Sbjct: 892 QVSYQNTKLLRIPSFSPNPEETPSPPAPSIAKSGSLDSELSVSPKRNSISRTHKEKGPFH 951
Query: 766 ILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGV 864
+L S SQT++ PE QSQTPV STSTRLFG+
Sbjct: 952 MLSSASQTNKAPEAQSQTPV----STSTRLFGL 980
>ref|XP_002688879.1| PREDICTED: Rho guanine nucleotide exchange factor 18-like [Bos
taurus].
Length = 1258
Score = 57.4 bits (137), Expect = 2e-08
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +1
Query: 118 QVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXX--ASRPSSLIEQEKQRSL 291
++VQ + L +LL +LQ V+ QQDSY+E QK ++R + L+EQE+QR+
Sbjct: 889 ELVQRIQTLSQLLLSLQVVIAQQDSYVEIQKAAIQEREKQFRLQSTRGNLLLEQERQRNF 948
Query: 292 EKQRQDLANLQRQQAQ 339
EKQR++LA +Q+ Q Q
Sbjct: 949 EKQREELAGVQKLQGQ 964
>ref|XP_600806.5| PREDICTED: Rho/Rac guanine nucleotide exchange factor 18 [Bos
taurus].
Length = 1258
Score = 57.4 bits (137), Expect = 2e-08
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +1
Query: 118 QVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXX--ASRPSSLIEQEKQRSL 291
++VQ + L +LL +LQ V+ QQDSY+E QK ++R + L+EQE+QR+
Sbjct: 889 ELVQRIQTLSQLLLSLQVVIAQQDSYVEIQKAAIQEREKQFRLQSTRGNLLLEQERQRNF 948
Query: 292 EKQRQDLANLQRQQAQ 339
EKQR++LA +Q+ Q Q
Sbjct: 949 EKQREELAGVQKLQGQ 964
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,978,195
Number of extensions: 630182
Number of successful extensions: 2190
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2174
Number of HSP's successfully gapped: 5
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013252
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013252
(1007 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536182.2| PREDICTED: similar to A-kinase anchor protein 1... 285 4e-77
Alignment gi|XP_854251.1| PREDICTED: similar to Rho-specific guanine nucl... 59 7e-09
>ref|XP_536182.2| PREDICTED: similar to A-kinase anchor protein 13 isoform 2 [Canis
familiaris].
Length = 2786
Score = 285 bits (730), Expect = 4e-77
Identities = 166/286 (58%), Positives = 180/286 (62%), Gaps = 10/286 (3%)
Frame = +1
Query: 37 LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXX 216
LRRTESDSGLKKGGNAN+VFMLKRNSEQ+VQSVIHLHELLSTLQGVVLQQDSYIEDQK
Sbjct: 2462 LRRTESDSGLKKGGNANLVFMLKRNSEQLVQSVIHLHELLSTLQGVVLQQDSYIEDQKLL 2521
Query: 217 XXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLXXXXXXXXXXXXXXXAL 396
+SRPSSL+EQEKQRSLEKQRQDLANLQ+QQAQHL AL
Sbjct: 2522 LAERALTRSSSRPSSLVEQEKQRSLEKQRQDLANLQKQQAQHLEEKRRREREWEARERAL 2581
Query: 397 QEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXXXXXXXXXXXXXXXXXKRD- 573
QERE RLA KG YQ D KRD
Sbjct: 2582 QEREARLAQREQDVWRGQQDLDREREELQHKKGAYQCDLERLRTAQKQLEREQEQLKRDA 2641
Query: 574 ---------RDACQVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRN 726
DACQV +QHTK++RI IAKSGSLDSELSVSPKRN
Sbjct: 2642 ERLSQRQVEHDACQVSYQHTKLLRIPSFFPNPEEPPMPSVPSIAKSGSLDSELSVSPKRN 2701
Query: 727 SLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGV 864
S+SRTHK+KG FHIL STSQT+++PEGQSQTPV S STRLFG+
Sbjct: 2702 SISRTHKDKGPFHILSSTSQTNKVPEGQSQTPV--PASASTRLFGL 2745
>ref|XP_854251.1| PREDICTED: similar to Rho-specific guanine nucleotide exchange
factor p114 [Canis familiaris].
Length = 1117
Score = 58.9 bits (141), Expect = 7e-09
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +1
Query: 118 QVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXX--ASRPSSLIEQEKQRSL 291
++VQ + L +LL +LQ V+ QQDSY+E Q+ ++R + L+EQE+QR+
Sbjct: 742 ELVQRIQTLSQLLLSLQAVIAQQDSYVEMQRASIQEREKQLRLQSTRGNMLLEQERQRNF 801
Query: 292 EKQRQDLANLQRQQAQ 339
EKQR++LA +Q+QQ +
Sbjct: 802 EKQREELAGVQKQQGR 817
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,140,607
Number of extensions: 651655
Number of successful extensions: 2210
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2197
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013252
(1007 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926509.3| PREDICTED: a-kinase anchor protein 13, parti... 339 2e-94
Alignment gi|XP_003123205.2| PREDICTED: rho guanine nucleotide exchange f... 55 5e-08
>ref|XP_001926509.3| PREDICTED: a-kinase anchor protein 13, partial [Sus scrofa].
Length = 1417
Score = 339 bits (869), Expect(2) = 2e-94
Identities = 191/276 (69%), Positives = 192/276 (69%)
Frame = +1
Query: 37 LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXX 216
LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQK
Sbjct: 1105 LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKLL 1164
Query: 217 XXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLXXXXXXXXXXXXXXXAL 396
ASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHL AL
Sbjct: 1165 LTERTLTRTASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLEEKRRREREWEARDRAL 1224
Query: 397 QEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXXXXXXXXXXXXXXXXXKRDR 576
QEREVRLA KGTYQSD KRDR
Sbjct: 1225 QEREVRLAQREDELRRGRQDLEREREELQQRKGTYQSDLERLRAAQRQLEREQEQLKRDR 1284
Query: 577 DACQVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRNSLSRTHKEKG 756
DACQVFHQHTKMMRI IAKSGSLDSELSVSPKRNSLSRTHKEKG
Sbjct: 1285 DACQVFHQHTKMMRIPSFSPSPEEAPLPSVPSIAKSGSLDSELSVSPKRNSLSRTHKEKG 1344
Query: 757 TFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGV 864
TFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFG+
Sbjct: 1345 TFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGL 1380
Score = 25.4 bits (54), Expect(2) = 2e-94
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 872 KGERGKKEEGARKPLAAR*CPSLEVSAEGEKI 967
K E+ KK +G+R P+ EVSAEGE+I
Sbjct: 1386 KKEKKKKSKGSRSQPGDG--PASEVSAEGEEI 1415
>ref|XP_003123205.2| PREDICTED: rho guanine nucleotide exchange factor 18 [Sus scrofa].
Length = 819
Score = 55.5 bits (132), Expect = 5e-08
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 118 QVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXX--ASRPSSLIEQEKQRSL 291
++V + L +LL +LQ V+ QQDSY+E Q+ ++R + L+EQE+QR+
Sbjct: 442 ELVHRIQTLSQLLLSLQAVIAQQDSYVEMQRATIQEREKQFRLQSTRGNLLLEQERQRNF 501
Query: 292 EKQRQDLANLQRQQAQ 339
EKQR++LA +Q+ Q Q
Sbjct: 502 EKQREELAGVQKLQGQ 517
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,381,990
Number of extensions: 405223
Number of successful extensions: 1380
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1372
Number of HSP's successfully gapped: 3
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013252
(1007 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083608.1| A kinase (PRKA) anchor protein 13 [Mus musculus]. 263 1e-70
Alignment gi|NP_598723.3| rho guanine nucleotide exchange factor 18 [Mus ... 53 4e-07
>ref|NP_083608.1| A kinase (PRKA) anchor protein 13 [Mus musculus].
Length = 2776
Score = 263 bits (673), Expect = 1e-70
Identities = 155/286 (54%), Positives = 176/286 (61%), Gaps = 10/286 (3%)
Frame = +1
Query: 37 LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXX 216
LRRTESDSGLKKGGN N+VFMLKRNSEQVVQS++HLHELLS LQGVVLQQDSYIEDQK
Sbjct: 2457 LRRTESDSGLKKGGNGNLVFMLKRNSEQVVQSIVHLHELLSMLQGVVLQQDSYIEDQKLV 2516
Query: 217 XXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLXXXXXXXXXXXXXXXAL 396
ASRPSSLIEQEKQRSLEKQRQDLANLQ+QQAQHL L
Sbjct: 2517 LTEKVLTRSASRPSSLIEQEKQRSLEKQRQDLANLQKQQAQHLEEKRRREREWEAREQEL 2576
Query: 397 QEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXXXXXXXXXXXXXXXXXKR-- 570
++RE +LA KGTYQ D +R
Sbjct: 2577 RDREAKLAEREETVRRRQQDLERDREELQQKKGTYQCDLERLRAAQKQLEREQEQLRRDT 2636
Query: 571 --------DRDACQVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRN 726
D++ CQV ++H ++MRI + KSGSLDSELSVSPKRN
Sbjct: 2637 ERLSQRQMDQNLCQVSNKHGRLMRIPSFLPNSDEFSSPSAPSVTKSGSLDSELSVSPKRN 2696
Query: 727 SLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGV 864
S+SRT K+KG FHILGS SQT ++PEGQSQ P +STSTSTRLFG+
Sbjct: 2697 SISRTQKDKGPFHILGSASQT-KVPEGQSQAP--SSTSTSTRLFGL 2739
>ref|NP_598723.3| rho guanine nucleotide exchange factor 18 [Mus musculus].
Length = 1021
Score = 52.8 bits (125), Expect = 4e-07
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 118 QVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXX--ASRPSSLIEQEKQRSL 291
++V V L +LL +LQ V+ QQDSY+E Q+ ++R + L+EQE+QR+
Sbjct: 641 ELVHRVQTLSQLLLSLQAVIAQQDSYVEMQRTAIQEREKQFRLQSTRGNLLLEQERQRNF 700
Query: 292 EKQRQDLANLQRQQAQ 339
EKQR++ A +++ Q+Q
Sbjct: 701 EKQREERAGVEKLQSQ 716
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,464,759
Number of extensions: 536605
Number of successful extensions: 1757
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1745
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013252
(1007 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006729.4| A-kinase anchor protein 13 isoform 1 [Homo sapi... 271 8e-73
Alignment gi|NP_009131.2| A-kinase anchor protein 13 isoform 2 [Homo sapi... 271 8e-73
Alignment gi|NP_658913.1| A-kinase anchor protein 13 isoform 3 [Homo sapi... 271 8e-73
Alignment gi|NP_001124427.1| rho guanine nucleotide exchange factor 18 is... 53 4e-07
Alignment gi|NP_056133.2| rho guanine nucleotide exchange factor 18 isofo... 53 4e-07
>ref|NP_006729.4| A-kinase anchor protein 13 isoform 1 [Homo sapiens].
Length = 2817
Score = 271 bits (692), Expect(2) = 8e-73
Identities = 161/286 (56%), Positives = 175/286 (61%), Gaps = 10/286 (3%)
Frame = +1
Query: 37 LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXX 216
LRRTESDSGLKKGGNAN+VFMLKRNSEQVVQSV+HL+ELLS LQGVVLQQDSYIEDQK
Sbjct: 2497 LRRTESDSGLKKGGNANLVFMLKRNSEQVVQSVVHLYELLSALQGVVLQQDSYIEDQKLV 2556
Query: 217 XXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLXXXXXXXXXXXXXXXAL 396
SRPSSLIEQEKQRSLEKQRQDLANLQ+QQAQ+L L
Sbjct: 2557 LSERALTRSLSRPSSLIEQEKQRSLEKQRQDLANLQKQQAQYLEEKRRREREWEAREREL 2616
Query: 397 QEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXXXXXXXXXXXXXXXXXKR-- 570
+ERE LA KGTYQ D +R
Sbjct: 2617 REREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQKQLEREQEQLRREA 2676
Query: 571 --------DRDACQVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRN 726
+RD CQV H HTK+MRI IAKSGSLDSELSVSPKRN
Sbjct: 2677 ERLSQRQTERDLCQVSHPHTKLMRIPSFFPSPEEPPSPSAPSIAKSGSLDSELSVSPKRN 2736
Query: 727 SLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGV 864
S+SRTHK+KG FHIL STSQT++ PEGQSQ P STS STRLFG+
Sbjct: 2737 SISRTHKDKGPFHILSSTSQTNKGPEGQSQAP--ASTSASTRLFGL 2780
Score = 22.3 bits (46), Expect(2) = 8e-73
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 872 KGERGKKEEGARKPLAAR*CPSLEVSAEGEKI 967
K E+ KK + +R P+ EVSAEGE+I
Sbjct: 2786 KKEKKKKNKTSRSQPGDG--PASEVSAEGEEI 2815
>ref|NP_009131.2| A-kinase anchor protein 13 isoform 2 [Homo sapiens].
Length = 2813
Score = 271 bits (692), Expect(2) = 8e-73
Identities = 161/286 (56%), Positives = 175/286 (61%), Gaps = 10/286 (3%)
Frame = +1
Query: 37 LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXX 216
LRRTESDSGLKKGGNAN+VFMLKRNSEQVVQSV+HL+ELLS LQGVVLQQDSYIEDQK
Sbjct: 2493 LRRTESDSGLKKGGNANLVFMLKRNSEQVVQSVVHLYELLSALQGVVLQQDSYIEDQKLV 2552
Query: 217 XXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLXXXXXXXXXXXXXXXAL 396
SRPSSLIEQEKQRSLEKQRQDLANLQ+QQAQ+L L
Sbjct: 2553 LSERALTRSLSRPSSLIEQEKQRSLEKQRQDLANLQKQQAQYLEEKRRREREWEAREREL 2612
Query: 397 QEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXXXXXXXXXXXXXXXXXKR-- 570
+ERE LA KGTYQ D +R
Sbjct: 2613 REREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQKQLEREQEQLRREA 2672
Query: 571 --------DRDACQVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRN 726
+RD CQV H HTK+MRI IAKSGSLDSELSVSPKRN
Sbjct: 2673 ERLSQRQTERDLCQVSHPHTKLMRIPSFFPSPEEPPSPSAPSIAKSGSLDSELSVSPKRN 2732
Query: 727 SLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGV 864
S+SRTHK+KG FHIL STSQT++ PEGQSQ P STS STRLFG+
Sbjct: 2733 SISRTHKDKGPFHILSSTSQTNKGPEGQSQAP--ASTSASTRLFGL 2776
Score = 22.3 bits (46), Expect(2) = 8e-73
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 872 KGERGKKEEGARKPLAAR*CPSLEVSAEGEKI 967
K E+ KK + +R P+ EVSAEGE+I
Sbjct: 2782 KKEKKKKNKTSRSQPGDG--PASEVSAEGEEI 2811
>ref|NP_658913.1| A-kinase anchor protein 13 isoform 3 [Homo sapiens].
Length = 1058
Score = 271 bits (692), Expect(2) = 8e-73
Identities = 161/286 (56%), Positives = 175/286 (61%), Gaps = 10/286 (3%)
Frame = +1
Query: 37 LRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXX 216
LRRTESDSGLKKGGNAN+VFMLKRNSEQVVQSV+HL+ELLS LQGVVLQQDSYIEDQK
Sbjct: 738 LRRTESDSGLKKGGNANLVFMLKRNSEQVVQSVVHLYELLSALQGVVLQQDSYIEDQKLV 797
Query: 217 XXXXXXXXXASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLXXXXXXXXXXXXXXXAL 396
SRPSSLIEQEKQRSLEKQRQDLANLQ+QQAQ+L L
Sbjct: 798 LSERALTRSLSRPSSLIEQEKQRSLEKQRQDLANLQKQQAQYLEEKRRREREWEAREREL 857
Query: 397 QEREVRLAXXXXXXXXXXXXXXXXXXXXXXXKGTYQSDXXXXXXXXXXXXXXXXXXKR-- 570
+ERE LA KGTYQ D +R
Sbjct: 858 REREALLAQREEEVQQGQQDLEKEREELQQKKGTYQYDLERLRAAQKQLEREQEQLRREA 917
Query: 571 --------DRDACQVFHQHTKMMRIXXXXXXXXXXXXXXXXXIAKSGSLDSELSVSPKRN 726
+RD CQV H HTK+MRI IAKSGSLDSELSVSPKRN
Sbjct: 918 ERLSQRQTERDLCQVSHPHTKLMRIPSFFPSPEEPPSPSAPSIAKSGSLDSELSVSPKRN 977
Query: 727 SLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGV 864
S+SRTHK+KG FHIL STSQT++ PEGQSQ P STS STRLFG+
Sbjct: 978 SISRTHKDKGPFHILSSTSQTNKGPEGQSQAP--ASTSASTRLFGL 1021
Score = 22.3 bits (46), Expect(2) = 8e-73
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 872 KGERGKKEEGARKPLAAR*CPSLEVSAEGEKI 967
K E+ KK + +R P+ EVSAEGE+I
Sbjct: 1027 KKEKKKKNKTSRSQPGDG--PASEVSAEGEEI 1056
>ref|NP_001124427.1| rho guanine nucleotide exchange factor 18 isoform b [Homo sapiens].
Length = 1173
Score = 53.1 bits (126), Expect = 4e-07
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = +1
Query: 118 QVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXX--ASRPSSLIEQEKQRSL 291
++VQ + L +LL LQ V+ QDSY+E Q+ ++R + L+EQE+QR+
Sbjct: 799 ELVQRIQTLSQLLLNLQAVIAHQDSYVETQRAAIQEREKQFRLQSTRGNLLLEQERQRNF 858
Query: 292 EKQRQDLANLQRQQAQ 339
EKQR++ A L++ Q+Q
Sbjct: 859 EKQREERAALEKLQSQ 874
>ref|NP_056133.2| rho guanine nucleotide exchange factor 18 isoform a [Homo sapiens].
Length = 1015
Score = 53.1 bits (126), Expect = 4e-07
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Frame = +1
Query: 118 QVVQSVIHLHELLSTLQGVVLQQDSYIEDQKXXXXXXXXXXX--ASRPSSLIEQEKQRSL 291
++VQ + L +LL LQ V+ QDSY+E Q+ ++R + L+EQE+QR+
Sbjct: 641 ELVQRIQTLSQLLLNLQAVIAHQDSYVETQRAAIQEREKQFRLQSTRGNLLLEQERQRNF 700
Query: 292 EKQRQDLANLQRQQAQ 339
EKQR++ A L++ Q+Q
Sbjct: 701 EKQREERAALEKLQSQ 716
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,650,261
Number of extensions: 640160
Number of successful extensions: 2278
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2261
Number of HSP's successfully gapped: 8
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013252
(1007 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 831 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 831 bits (419), Expect = 0.0
Identities = 425/427 (99%)
Strand = Plus / Plus
Query: 164 tgcagggtgtggtgctgcaacaagacagctacatcgaggaccagaagctgctgctgactg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575673 tgcagggtgtggtgctgcaacaagacagctacatcgaggaccagaagctgctgctgactg 94575732
Query: 224 agcggacgctcacacggacggcatcccggcccagctccctcatcgagcaggagaagcagc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575733 agcggacgctcacacggacggcatcccggcccagctccctcatcgagcaggagaagcagc 94575792
Query: 284 gcagcctggagaagcagcgccaggacctggccaacctgcagaggcagcaggcgcagcacc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575793 gcagcctggagaagcagcgccaggacctggccaacctgcagaggcagcaggcgcagcacc 94575852
Query: 344 tggaggagaagcggcggcgggagcgcgagtgggaggcccgcgacagggcgctgcaggagc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575853 tggaggagaagcggcggcgggagcgcgagtgggaggcccgcgacagggcgctgcaggagc 94575912
Query: 404 gtgaggtgcggctggcgcagcgcgaggacgagctgcggcgaggccgccaagacctggagc 463
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94575913 gcgaggtgcggctggcgcagcgcgaggacgagctgcggcgaggccgccaagacctggagc 94575972
Query: 464 gcgagcgggaggagctgcagcagaggaagggcacctaccagagcgacctggagcgcctgc 523
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 94575973 gcgagcgggaggagctgcagcagaggaagggcacctaccagagcgatctggagcgcctgc 94576032
Query: 524 gcgccgcccagaggcagctcgagcgcgagcaggagcagctgaagcgcgaccgcgacgcct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94576033 gcgccgcccagaggcagctcgagcgcgagcaggagcagctgaagcgcgaccgcgacgcct 94576092
Query: 584 gccaggt 590
|||||||
Sbjct: 94576093 gccaggt 94576099
Score = 595 bits (300), Expect = e-167
Identities = 336/344 (97%), Gaps = 3/344 (0%)
Strand = Plus / Plus
Query: 586 caggttttccatcaacacaccaagatgatgagaatcccatccttctcacccagtcctgag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94577318 caggttttccatcaacacaccaagatgatgagaatcccatccttctcacccagtcctgag 94577377
Query: 646 gaggcccccttgccatctgcaccttcaatagccaaatcagggtcattggactcagaactc 705
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 94577378 gaggcccccttgccatctgtaccttcaatagccaaatcagggtcattggactcagaactc 94577437
Query: 706 tcagtgtcccccaaaaggaacagcctctctcggacacacaaagaaaaggggacttttcac 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94577438 tcagtgtcccccaaaaggaacagcctctctcggacacacaaagaaaaggggacttttcac 94577497
Query: 766 atactgggttccacaagccagacaagcagaataccagagggtcagagccagacgccagtc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94577498 atactgggttccacaagccagacaagcagaataccagagggtcagagccagacgccagtc 94577557
Query: 826 tgcacctccacatccacctccacccgcctgtttggggta-ccaagccaaaggagaaagag 884
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 94577558 tgcacctccacatccacctccacccgcctgtttgggttagccaagccaaaggagaagaag 94577617
Query: 885 ggaaaaaagaagaaggagc-aaggaagccgctcgcagcccggtg 927
| |||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 94577618 gaaaaaaagaagaa-gagcaaaggaagccgctcgcagcccggtg 94577660
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 ggtggtgaaaaggaagagggagatgatggccaagatcttaggagaacagaatcggacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94571572 ggtggtgaaaaggaagagggagatgatggccaagatcttaggagaacagaatcggacagt 94571631
Query: 61 ggtctgaaaaagg 73
|||||||||||||
Sbjct: 94571632 ggtctgaaaaagg 94571644
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 116 agcaggtcgtccagagcgtcatccatctccacgagctcctcagcactttgcagg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94574918 agcaggtcgtccagagcgtcatccatctccacgagctcctcagcactttgcagg 94574971
Score = 95.6 bits (48), Expect = 4e-17
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 941 gaagtatccgcagagggggagaagatct-ctgctgacctgctcctctgctgaagcagctg 999
|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct: 94578485 gaagtatccgcagagggggaagagatcttctgctgacctgctcctctgctgaggcagctg 94578544
Query: 1000 cctcccat 1007
||||||||
Sbjct: 94578545 cctcccat 94578552
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 71 agggtggaaatgctaacgtggtatttatgcttaaaagaaacagtgag 117
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94572083 agggtggaaatgctaacgtggtatttatgcttaaaagaaacagtgag 94572129
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,916,599
Number of extensions: 342
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 6
Length of query: 1007
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 986
Effective length of database: 2,808,413,156
Effective search space: 2769095371816
Effective search space used: 2769095371816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)