Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013253
(1180 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039681.1| E3 ubiquitin-protein ligase RNF8 [Bos taurus]. 557 e-159
>ref|NP_001039681.1| E3 ubiquitin-protein ligase RNF8 [Bos taurus].
Length = 487
Score = 557 bits (1435), Expect = e-159
Identities = 278/338 (82%), Positives = 298/338 (88%)
Frame = +3
Query: 165 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 344
MG+PGSLVT GRAG+RSWCLRRVGMN EWLLLEDG EVTVGRGFGVTYQLVSKICPLMIS
Sbjct: 1 MGDPGSLVTEGRAGERSWCLRRVGMNTEWLLLEDGNEVTVGRGFGVTYQLVSKICPLMIS 60
Query: 345 RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY 524
RNHC+LKQNAEGQWTI DNKSLNGVWLNRERLEPLKVYSIH+GDHIQLGVPLENKENAEY
Sbjct: 61 RNHCILKQNAEGQWTIKDNKSLNGVWLNRERLEPLKVYSIHKGDHIQLGVPLENKENAEY 120
Query: 525 EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS 704
EYEVTE+DWER+YPCLS KSDQMMEKNKGLRTKRKF+LDELEGSGAEGPS LKSKISK+S
Sbjct: 121 EYEVTEEDWERIYPCLSPKSDQMMEKNKGLRTKRKFSLDELEGSGAEGPSNLKSKISKLS 180
Query: 705 CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQHRKQKASN 884
CEPGQ VKSH KGKVA Q +EYLDPKLT +PS K GAHV P PAKV+EL +K+KASN
Sbjct: 181 CEPGQQVKSHGKGKVASQPSEYLDPKLTSFEPSVKTTGAHVNPGPAKVIELLRKKKKASN 240
Query: 885 PSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDLXXX 1064
PSASQSSLELFKVTMSRIL LKTQMQEKQ+AVLNVKKQT+KG+SKKIVKMEQEL DL
Sbjct: 241 PSASQSSLELFKVTMSRILMLKTQMQEKQVAVLNVKKQTKKGSSKKIVKMEQELQDLQSQ 300
Query: 1065 XXXXXXXXXXIVEHLEKTFQEEXXPLQGLKKEQGKEDL 1178
VE LEKT QEE L+GL+KE+G+EDL
Sbjct: 301 LCAEQAQQQARVEQLEKTIQEEQQHLEGLEKEEGEEDL 338
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,326,810
Number of extensions: 1089579
Number of successful extensions: 3816
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3809
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013253
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013253
(1180 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538896.2| PREDICTED: similar to CG6379-PA isoform 1 [Cani... 536 e-152
Alignment gi|XP_864751.1| PREDICTED: similar to CG6379-PA isoform 3 [Cani... 536 e-152
Alignment gi|XP_864730.1| PREDICTED: similar to Ubiquitin ligase protein ... 536 e-152
>ref|XP_538896.2| PREDICTED: similar to CG6379-PA isoform 1 [Canis familiaris].
Length = 1090
Score = 536 bits (1381), Expect = e-152
Identities = 270/338 (79%), Positives = 292/338 (86%)
Frame = +3
Query: 165 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 344
M EPGSLVTG RAG R WCLRR MNAEWLLLEDG EVT+GRGFGVTYQLVSKICPLMIS
Sbjct: 1 MEEPGSLVTGDRAGGRRWCLRRARMNAEWLLLEDGNEVTIGRGFGVTYQLVSKICPLMIS 60
Query: 345 RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY 524
RNHCVLKQN EGQWTI DNKSLNGVWLNRERLEPLKVYSIH+GDHIQLGVPLENKENAEY
Sbjct: 61 RNHCVLKQNVEGQWTIMDNKSLNGVWLNRERLEPLKVYSIHKGDHIQLGVPLENKENAEY 120
Query: 525 EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS 704
EYEVTE+DWER+YPCL+ K+DQ++ KN+GLRTKRKF+LDELEG GAEGPS LKSKISKVS
Sbjct: 121 EYEVTEEDWERMYPCLAPKNDQIIGKNRGLRTKRKFSLDELEGPGAEGPSHLKSKISKVS 180
Query: 705 CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQHRKQKASN 884
+PGQPVKSH KG+VA Q +EYLDPKLT L+ S KA AHVYP KVV L H+KQKAS+
Sbjct: 181 YKPGQPVKSHGKGEVASQPSEYLDPKLTSLELSEKATDAHVYPSSTKVVALHHKKQKASS 240
Query: 885 PSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDLXXX 1064
PSASQSSLELFKVTMSRILKLKTQMQEKQ+AVLNVK+QTQKGNSKKIVKME+EL DL
Sbjct: 241 PSASQSSLELFKVTMSRILKLKTQMQEKQVAVLNVKRQTQKGNSKKIVKMEKELQDLQSQ 300
Query: 1065 XXXXXXXXXXIVEHLEKTFQEEXXPLQGLKKEQGKEDL 1178
VE LEKTFQEE LQGL+K+QG+EDL
Sbjct: 301 LCAEQAQQQARVEQLEKTFQEEEQHLQGLEKDQGEEDL 338
>ref|XP_864751.1| PREDICTED: similar to CG6379-PA isoform 3 [Canis familiaris].
Length = 880
Score = 536 bits (1381), Expect = e-152
Identities = 270/338 (79%), Positives = 292/338 (86%)
Frame = +3
Query: 165 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 344
M EPGSLVTG RAG R WCLRR MNAEWLLLEDG EVT+GRGFGVTYQLVSKICPLMIS
Sbjct: 1 MEEPGSLVTGDRAGGRRWCLRRARMNAEWLLLEDGNEVTIGRGFGVTYQLVSKICPLMIS 60
Query: 345 RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY 524
RNHCVLKQN EGQWTI DNKSLNGVWLNRERLEPLKVYSIH+GDHIQLGVPLENKENAEY
Sbjct: 61 RNHCVLKQNVEGQWTIMDNKSLNGVWLNRERLEPLKVYSIHKGDHIQLGVPLENKENAEY 120
Query: 525 EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS 704
EYEVTE+DWER+YPCL+ K+DQ++ KN+GLRTKRKF+LDELEG GAEGPS LKSKISKVS
Sbjct: 121 EYEVTEEDWERMYPCLAPKNDQIIGKNRGLRTKRKFSLDELEGPGAEGPSHLKSKISKVS 180
Query: 705 CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQHRKQKASN 884
+PGQPVKSH KG+VA Q +EYLDPKLT L+ S KA AHVYP KVV L H+KQKAS+
Sbjct: 181 YKPGQPVKSHGKGEVASQPSEYLDPKLTSLELSEKATDAHVYPSSTKVVALHHKKQKASS 240
Query: 885 PSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDLXXX 1064
PSASQSSLELFKVTMSRILKLKTQMQEKQ+AVLNVK+QTQKGNSKKIVKME+EL DL
Sbjct: 241 PSASQSSLELFKVTMSRILKLKTQMQEKQVAVLNVKRQTQKGNSKKIVKMEKELQDLQSQ 300
Query: 1065 XXXXXXXXXXIVEHLEKTFQEEXXPLQGLKKEQGKEDL 1178
VE LEKTFQEE LQGL+K+QG+EDL
Sbjct: 301 LCAEQAQQQARVEQLEKTFQEEEQHLQGLEKDQGEEDL 338
>ref|XP_864730.1| PREDICTED: similar to Ubiquitin ligase protein RNF8 (RING finger
protein 8) isoform 2 [Canis familiaris].
Length = 487
Score = 536 bits (1381), Expect = e-152
Identities = 270/338 (79%), Positives = 292/338 (86%)
Frame = +3
Query: 165 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 344
M EPGSLVTG RAG R WCLRR MNAEWLLLEDG EVT+GRGFGVTYQLVSKICPLMIS
Sbjct: 1 MEEPGSLVTGDRAGGRRWCLRRARMNAEWLLLEDGNEVTIGRGFGVTYQLVSKICPLMIS 60
Query: 345 RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY 524
RNHCVLKQN EGQWTI DNKSLNGVWLNRERLEPLKVYSIH+GDHIQLGVPLENKENAEY
Sbjct: 61 RNHCVLKQNVEGQWTIMDNKSLNGVWLNRERLEPLKVYSIHKGDHIQLGVPLENKENAEY 120
Query: 525 EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS 704
EYEVTE+DWER+YPCL+ K+DQ++ KN+GLRTKRKF+LDELEG GAEGPS LKSKISKVS
Sbjct: 121 EYEVTEEDWERMYPCLAPKNDQIIGKNRGLRTKRKFSLDELEGPGAEGPSHLKSKISKVS 180
Query: 705 CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQHRKQKASN 884
+PGQPVKSH KG+VA Q +EYLDPKLT L+ S KA AHVYP KVV L H+KQKAS+
Sbjct: 181 YKPGQPVKSHGKGEVASQPSEYLDPKLTSLELSEKATDAHVYPSSTKVVALHHKKQKASS 240
Query: 885 PSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDLXXX 1064
PSASQSSLELFKVTMSRILKLKTQMQEKQ+AVLNVK+QTQKGNSKKIVKME+EL DL
Sbjct: 241 PSASQSSLELFKVTMSRILKLKTQMQEKQVAVLNVKRQTQKGNSKKIVKMEKELQDLQSQ 300
Query: 1065 XXXXXXXXXXIVEHLEKTFQEEXXPLQGLKKEQGKEDL 1178
VE LEKTFQEE LQGL+K+QG+EDL
Sbjct: 301 LCAEQAQQQARVEQLEKTFQEEEQHLQGLEKDQGEEDL 338
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,074,187
Number of extensions: 1123134
Number of successful extensions: 3731
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3725
Number of HSP's successfully gapped: 3
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013253
(1180 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927699.2| PREDICTED: e3 ubiquitin-protein ligase RNF8 ... 635 0.0
>ref|XP_001927699.2| PREDICTED: e3 ubiquitin-protein ligase RNF8 [Sus scrofa].
Length = 487
Score = 635 bits (1638), Expect = 0.0
Identities = 318/338 (94%), Positives = 320/338 (94%)
Frame = +3
Query: 165 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 344
MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS
Sbjct: 1 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 60
Query: 345 RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY 524
RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY
Sbjct: 61 RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY 120
Query: 525 EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS 704
EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS
Sbjct: 121 EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS 180
Query: 705 CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQHRKQKASN 884
CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQHRKQKASN
Sbjct: 181 CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQHRKQKASN 240
Query: 885 PSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDLXXX 1064
PSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDL
Sbjct: 241 PSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDLQSQ 300
Query: 1065 XXXXXXXXXXIVEHLEKTFQEEXXPLQGLKKEQGKEDL 1178
VE LEKTFQEE LQGL+KEQG+EDL
Sbjct: 301 LCAEQAQQQARVEQLEKTFQEEQQHLQGLEKEQGEEDL 338
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,594,372
Number of extensions: 699662
Number of successful extensions: 2384
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2382
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013253
(1180 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067394.1| E3 ubiquitin-protein ligase RNF8 [Mus musculus]. 409 e-114
>ref|NP_067394.1| E3 ubiquitin-protein ligase RNF8 [Mus musculus].
Length = 488
Score = 409 bits (1051), Expect = e-114
Identities = 215/339 (63%), Positives = 253/339 (74%), Gaps = 1/339 (0%)
Frame = +3
Query: 165 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 344
MGEP LV+G A RSWCLRR+GM+ EWL LE G EVT+GRG VTYQL+SK+CPLMIS
Sbjct: 1 MGEPDPLVSGQLAARRSWCLRRLGMDCEWLQLEAGTEVTIGRGLSVTYQLISKVCPLMIS 60
Query: 345 RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY 524
R+HCVLKQN EGQWTI DNKSLNGVWLNRERL PL+ Y I +GDHIQLGVPLE++E AEY
Sbjct: 61 RSHCVLKQNPEGQWTIMDNKSLNGVWLNRERLAPLQGYCIRKGDHIQLGVPLESRETAEY 120
Query: 525 EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS 704
EYEV E+DWE + PCL+ K+DQ MEK+KG RTKRKF+ LE AEG S L+ ++ V+
Sbjct: 121 EYEVIEEDWESLAPCLAPKNDQRMEKHKGSRTKRKFSSPGLENLPAEGSSDLRCPLANVA 180
Query: 705 CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQ-HRKQKAS 881
+P +P K H KG + Q L P LT L+ S +A G H KV+EL +KQKA
Sbjct: 181 SKPIEPEKLHGKGDASSQSLGCLCPGLTSLKASERAAGPHACSALPKVLELSCPKKQKAC 240
Query: 882 NPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDLXX 1061
PSASQ+SLELFKVTMSR+LKLKTQMQEKQIAVLNVK+QT+KG+SKKIV+ME+EL +L
Sbjct: 241 RPSASQNSLELFKVTMSRMLKLKTQMQEKQIAVLNVKRQTRKGSSKKIVRMEKELRNLQS 300
Query: 1062 XXXXXXXXXXXIVEHLEKTFQEEXXPLQGLKKEQGKEDL 1178
VE LEKTFQEE LQGL+KEQG+ DL
Sbjct: 301 QLYAEQAQQQARVEQLEKTFQEEAHYLQGLEKEQGECDL 339
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,952,160
Number of extensions: 929093
Number of successful extensions: 3198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3193
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013253
(1180 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_898901.1| E3 ubiquitin-protein ligase RNF8 isoform 2 [Hom... 492 e-139
Alignment gi|NP_003949.1| E3 ubiquitin-protein ligase RNF8 isoform 1 [Hom... 492 e-139
>ref|NP_898901.1| E3 ubiquitin-protein ligase RNF8 isoform 2 [Homo sapiens].
Length = 448
Score = 492 bits (1267), Expect = e-139
Identities = 253/338 (74%), Positives = 279/338 (82%)
Frame = +3
Query: 165 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 344
MGEPG VTG RAG RSWCLRRVGM+A WLLLEDG EVTVGRGFGVTYQLVSKICPLMIS
Sbjct: 1 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS 60
Query: 345 RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY 524
RNHCVLKQN EGQWTI DNKSLNGVWLNR RLEPL+VYSIH+GD+IQLGVPLENKENAEY
Sbjct: 61 RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY 120
Query: 525 EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS 704
EYEVTE+DWE +YPCLS K+DQM+EKNK LRTKRKF+LDEL G GAEGPS LKSKI+KVS
Sbjct: 121 EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS 180
Query: 705 CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQHRKQKASN 884
CE GQPVKS KG+VA ++ LDPKLT L+PS K GA +YP KV E+ H +QKASN
Sbjct: 181 CESGQPVKSQGKGEVASTPSDNLDPKLTALEPS-KTTGAPIYPGFPKVTEV-HHEQKASN 238
Query: 885 PSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDLXXX 1064
SASQ SL++FKVTMSRIL+LK QMQEK AV+NVKKQTQKGNSKK+V+MEQEL DL
Sbjct: 239 SSASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQ 298
Query: 1065 XXXXXXXXXXIVEHLEKTFQEEXXPLQGLKKEQGKEDL 1178
VE LEKTFQEE LQGL+ QG++DL
Sbjct: 299 LCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDL 336
>ref|NP_003949.1| E3 ubiquitin-protein ligase RNF8 isoform 1 [Homo sapiens].
Length = 485
Score = 492 bits (1267), Expect = e-139
Identities = 253/338 (74%), Positives = 279/338 (82%)
Frame = +3
Query: 165 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 344
MGEPG VTG RAG RSWCLRRVGM+A WLLLEDG EVTVGRGFGVTYQLVSKICPLMIS
Sbjct: 1 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS 60
Query: 345 RNHCVLKQNAEGQWTITDNKSLNGVWLNRERLEPLKVYSIHEGDHIQLGVPLENKENAEY 524
RNHCVLKQN EGQWTI DNKSLNGVWLNR RLEPL+VYSIH+GD+IQLGVPLENKENAEY
Sbjct: 61 RNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEY 120
Query: 525 EYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRKFNLDELEGSGAEGPSTLKSKISKVS 704
EYEVTE+DWE +YPCLS K+DQM+EKNK LRTKRKF+LDEL G GAEGPS LKSKI+KVS
Sbjct: 121 EYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRKFSLDELAGPGAEGPSNLKSKINKVS 180
Query: 705 CEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGKALGAHVYPVPAKVVELQHRKQKASN 884
CE GQPVKS KG+VA ++ LDPKLT L+PS K GA +YP KV E+ H +QKASN
Sbjct: 181 CESGQPVKSQGKGEVASTPSDNLDPKLTALEPS-KTTGAPIYPGFPKVTEV-HHEQKASN 238
Query: 885 PSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNVKKQTQKGNSKKIVKMEQELHDLXXX 1064
SASQ SL++FKVTMSRIL+LK QMQEK AV+NVKKQTQKGNSKK+V+MEQEL DL
Sbjct: 239 SSASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQ 298
Query: 1065 XXXXXXXXXXIVEHLEKTFQEEXXPLQGLKKEQGKEDL 1178
VE LEKTFQEE LQGL+ QG++DL
Sbjct: 299 LCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDL 336
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,346,187
Number of extensions: 1108719
Number of successful extensions: 3863
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3854
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013253
(1180 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1162 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1162 bits (586), Expect = 0.0
Identities = 586/586 (100%)
Strand = Plus / Plus
Query: 403 agagtctgaatggtgtttggctgaacagagaacgtctagaacctttaaaggtctattcta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418167 agagtctgaatggtgtttggctgaacagagaacgtctagaacctttaaaggtctattcta 418226
Query: 463 tccatgagggagaccacatccagcttggggtgcctctggaaaataaggagaatgcggagt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418227 tccatgagggagaccacatccagcttggggtgcctctggaaaataaggagaatgcggagt 418286
Query: 523 atgaatatgaagttaccgaagacgactgggagagggtttatccttgtctgtccctaaaga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418287 atgaatatgaagttaccgaagacgactgggagagggtttatccttgtctgtccctaaaga 418346
Query: 583 gtgaccaaatgatggaaaagaataagggcttgagaactaaaaggaagtttaatttggatg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418347 gtgaccaaatgatggaaaagaataagggcttgagaactaaaaggaagtttaatttggatg 418406
Query: 643 agttagagggttctggagctgaaggcccctcaactttgaaatccaaaataagtaaagtgt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418407 agttagagggttctggagctgaaggcccctcaactttgaaatccaaaataagtaaagtgt 418466
Query: 703 cttgtgaacctggtcaaccagtgaagtcacatgagaaaggtaaagtggctggtcagctca 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418467 cttgtgaacctggtcaaccagtgaagtcacatgagaaaggtaaagtggctggtcagctca 418526
Query: 763 atgaatatttggatcctaagttgacttgtcttcagccaagtgggaaggccctgggggctc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418527 atgaatatttggatcctaagttgacttgtcttcagccaagtgggaaggccctgggggctc 418586
Query: 823 atgtttacccagtccctgcaaaagtcgtagagcttcagcacaggaagcagaaagcctcaa 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418587 atgtttacccagtccctgcaaaagtcgtagagcttcagcacaggaagcagaaagcctcaa 418646
Query: 883 acccttcagcatctcagagcagcttagagctgtttaaggtcaccatgtccaggattctaa 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418647 acccttcagcatctcagagcagcttagagctgtttaaggtcaccatgtccaggattctaa 418706
Query: 943 agctgaaaacacagatgcaggaaaaacagatcgctgttctgaatgt 988
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418707 agctgaaaacacagatgcaggaaaaacagatcgctgttctgaatgt 418752
Score = 1162 bits (586), Expect = 0.0
Identities = 586/586 (100%)
Strand = Plus / Plus
Query: 403 agagtctgaatggtgtttggctgaacagagaacgtctagaacctttaaaggtctattcta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854756 agagtctgaatggtgtttggctgaacagagaacgtctagaacctttaaaggtctattcta 37854815
Query: 463 tccatgagggagaccacatccagcttggggtgcctctggaaaataaggagaatgcggagt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854816 tccatgagggagaccacatccagcttggggtgcctctggaaaataaggagaatgcggagt 37854875
Query: 523 atgaatatgaagttaccgaagacgactgggagagggtttatccttgtctgtccctaaaga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854876 atgaatatgaagttaccgaagacgactgggagagggtttatccttgtctgtccctaaaga 37854935
Query: 583 gtgaccaaatgatggaaaagaataagggcttgagaactaaaaggaagtttaatttggatg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854936 gtgaccaaatgatggaaaagaataagggcttgagaactaaaaggaagtttaatttggatg 37854995
Query: 643 agttagagggttctggagctgaaggcccctcaactttgaaatccaaaataagtaaagtgt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854996 agttagagggttctggagctgaaggcccctcaactttgaaatccaaaataagtaaagtgt 37855055
Query: 703 cttgtgaacctggtcaaccagtgaagtcacatgagaaaggtaaagtggctggtcagctca 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855056 cttgtgaacctggtcaaccagtgaagtcacatgagaaaggtaaagtggctggtcagctca 37855115
Query: 763 atgaatatttggatcctaagttgacttgtcttcagccaagtgggaaggccctgggggctc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855116 atgaatatttggatcctaagttgacttgtcttcagccaagtgggaaggccctgggggctc 37855175
Query: 823 atgtttacccagtccctgcaaaagtcgtagagcttcagcacaggaagcagaaagcctcaa 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855176 atgtttacccagtccctgcaaaagtcgtagagcttcagcacaggaagcagaaagcctcaa 37855235
Query: 883 acccttcagcatctcagagcagcttagagctgtttaaggtcaccatgtccaggattctaa 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855236 acccttcagcatctcagagcagcttagagctgtttaaggtcaccatgtccaggattctaa 37855295
Query: 943 agctgaaaacacagatgcaggaaaaacagatcgctgttctgaatgt 988
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855296 agctgaaaacacagatgcaggaaaaacagatcgctgttctgaatgt 37855341
Score = 545 bits (275), Expect = e-152
Identities = 278/279 (99%)
Strand = Plus / Plus
Query: 1 gagcgtttgcatcgatcgcgagctcctagcgattgcttctgtctgtactgttagtatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470246 gagcgtttgcatcgatcgcgagctcctagcgattgcttctgtctgtactgttagtatggc 470305
Query: 61 gtccgcgagaaagcggagaggcggcgggaactcgggtcggggtctcgctctgtgctgaca 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 470306 gtccgcgagaaagcggagaggcggcgggaactcgggtcgggttctcgctctgtgctgaca 470365
Query: 121 gcaacctcgctctgtactgacagcaacccagggccgagtgggctatgggggagcccggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470366 gcaacctcgctctgtactgacagcaacccagggccgagtgggctatgggggagcccggct 470425
Query: 181 ccctggtcacgggaggccgcgccggtgaccggagctggtgcttgcggcgggtggggatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470426 ccctggtcacgggaggccgcgccggtgaccggagctggtgcttgcggcgggtggggatga 470485
Query: 241 acgccgagtggctgctgctggaggacggaaaagaggtga 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 470486 acgccgagtggctgctgctggaggacggaaaagaggtga 470524
Score = 545 bits (275), Expect = e-152
Identities = 278/279 (99%)
Strand = Plus / Plus
Query: 1 gagcgtttgcatcgatcgcgagctcctagcgattgcttctgtctgtactgttagtatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37836047 gagcgtttgcatcgatcgcgagctcctagcgattgcttctgtctgtactgttagtatggc 37836106
Query: 61 gtccgcgagaaagcggagaggcggcgggaactcgggtcggggtctcgctctgtgctgaca 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 37836107 gtccgcgagaaagcggagaggcggcgggaactcgggtcgggttctcgctctgtgctgaca 37836166
Query: 121 gcaacctcgctctgtactgacagcaacccagggccgagtgggctatgggggagcccggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37836167 gcaacctcgctctgtactgacagcaacccagggccgagtgggctatgggggagcccggct 37836226
Query: 181 ccctggtcacgggaggccgcgccggtgaccggagctggtgcttgcggcgggtggggatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37836227 ccctggtcacgggaggccgcgccggtgaccggagctggtgcttgcggcgggtggggatga 37836286
Query: 241 acgccgagtggctgctgctggaggacggaaaagaggtga 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 37836287 acgccgagtggctgctgctggaggacggaaaagaggtga 37836325
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 274 aggtgactgtaggtcgaggatttggtgtcacataccagttggtttcaaaaatttgccctc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408075 aggtgactgtaggtcgaggatttggtgtcacataccagttggtttcaaaaatttgccctc 408134
Query: 334 tgatgatttcccgaaaccactgtgtcttgaagcagaatgccgagggccagtggacaatta 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408135 tgatgatttcccgaaaccactgtgtcttgaagcagaatgccgagggccagtggacaatta 408194
Query: 394 cggacaacaag 404
|||||||||||
Sbjct: 408195 cggacaacaag 408205
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 274 aggtgactgtaggtcgaggatttggtgtcacataccagttggtttcaaaaatttgccctc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37844745 aggtgactgtaggtcgaggatttggtgtcacataccagttggtttcaaaaatttgccctc 37844804
Query: 334 tgatgatttcccgaaaccactgtgtcttgaagcagaatgccgagggccagtggacaatta 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37844805 tgatgatttcccgaaaccactgtgtcttgaagcagaatgccgagggccagtggacaatta 37844864
Query: 394 cggacaacaag 404
|||||||||||
Sbjct: 37844865 cggacaacaag 37844875
Score = 174 bits (88), Expect = 7e-41
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 1033 tggagcaggaactgcacgatttacagtcccagctgtgtgcagagcaggcccagcagcagg 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418797 tggagcaggaactgcacgatttacagtcccagctgtgtgcagagcaggcccagcagcagg 418856
Query: 1093 ccatagtggagcacctggaaaagactttccaggaagagca 1132
||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 418857 ccagagtggagcagctggagaagactttccaggaagagca 418896
Score = 174 bits (88), Expect = 7e-41
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 1033 tggagcaggaactgcacgatttacagtcccagctgtgtgcagagcaggcccagcagcagg 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855386 tggagcaggaactgcacgatttacagtcccagctgtgtgcagagcaggcccagcagcagg 37855445
Query: 1093 ccatagtggagcacctggaaaagactttccaggaagagca 1132
||| ||||||||| ||||| ||||||||||||||||||||
Sbjct: 37855446 ccagagtggagcagctggagaagactttccaggaagagca 37855485
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,544,226
Number of extensions: 218
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 8
Length of query: 1180
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1159
Effective length of database: 2,808,413,156
Effective search space: 3254950847804
Effective search space used: 3254950847804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)