Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013254
(2043 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864730.1| PREDICTED: similar to Ubiquitin ligase protein ... 756 0.0
Alignment gi|XP_538896.2| PREDICTED: similar to CG6379-PA isoform 1 [Cani... 756 0.0
Alignment gi|XP_864751.1| PREDICTED: similar to CG6379-PA isoform 3 [Cani... 756 0.0
Alignment gi|XP_858620.1| PREDICTED: similar to Polycomb group ring finge... 57 7e-08
Alignment gi|XP_856723.1| PREDICTED: similar to Ubiquitin ligase protein ... 55 3e-07
Alignment gi|XP_534631.2| PREDICTED: similar to Ubiquitin ligase protein ... 55 3e-07
Alignment gi|XP_848636.1| PREDICTED: similar to Ubiquitin ligase protein ... 55 3e-07
Alignment gi|XP_856604.1| PREDICTED: similar to checkpoint with forkhead ... 55 3e-07
Alignment gi|XP_855659.1| PREDICTED: similar to tripartite motif-containi... 54 4e-07
Alignment gi|XP_538824.2| PREDICTED: similar to tripartite motif-containi... 54 4e-07
>ref|XP_864730.1| PREDICTED: similar to Ubiquitin ligase protein RNF8 (RING finger
protein 8) isoform 2 [Canis familiaris].
Length = 487
Score = 756 bits (1953), Expect = 0.0
Identities = 387/509 (76%), Positives = 415/509 (81%)
Frame = +1
Query: 136 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 315
M EPGSLVTG RAG R WCLRR MNAEWLLLEDG EVT+GRGFGVTYQLVSKICPLMIS
Sbjct: 1 MEEPGSLVTGDRAGGRRWCLRRARMNAEWLLLEDGNEVTIGRGFGVTYQLVSKICPLMIS 60
Query: 316 RNHCVLKQNAEGQWTITDNKKSAELITPYNFSGCI*MQWFGEGWQSLNGVWLNRERLEPL 495
RNHCVLKQN EGQWTI DNK SLNGVWLNRERLEPL
Sbjct: 61 RNHCVLKQNVEGQWTIMDNK-------------------------SLNGVWLNRERLEPL 95
Query: 496 KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK 675
KVYSIH+GDHIQLGVPLENKENAEYEYEVTE+DWER+YPCL+ K+DQ++ KN+GLRTKRK
Sbjct: 96 KVYSIHKGDHIQLGVPLENKENAEYEYEVTEEDWERMYPCLAPKNDQIIGKNRGLRTKRK 155
Query: 676 FNLDELEGSGAEGPSTLKSKISKVSCEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGK 855
F+LDELEG GAEGPS LKSKISKVS +PGQPVKSH KG+VA Q +EYLDPKLT L+ S K
Sbjct: 156 FSLDELEGPGAEGPSHLKSKISKVSYKPGQPVKSHGKGEVASQPSEYLDPKLTSLELSEK 215
Query: 856 ALGAHVYPVPAKVVELQHRKQKASNPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNV 1035
A AHVYP KVV L H+KQKAS+PSASQSSLELFKVTMSRILKLKTQMQEKQ+AVLNV
Animal-Genome cDNA 20110601C-013254
Animal-Genome cDNA 20110601C-013254
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013254
(2043 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039681.1| E3 ubiquitin-protein ligase RNF8 [Bos taurus]. 770 0.0
Alignment gi|NP_001192403.1| E3 ubiquitin-protein ligase CHFR [Bos taurus]. 55 3e-07
Alignment gi|XP_002694492.1| PREDICTED: checkpoint with forkhead and ring... 55 3e-07
Alignment gi|XP_002694491.1| PREDICTED: checkpoint with forkhead and ring... 55 3e-07
Alignment gi|XP_002701732.1| PREDICTED: checkpoint with forkhead and ring... 55 3e-07
Alignment gi|NP_001033161.1| polycomb complex protein BMI-1 [Bos taurus]. 54 5e-07
Alignment gi|NP_001178063.1| LON peptidase N-terminal domain and RING fin... 51 3e-06
Alignment gi|XP_002699513.1| PREDICTED: LON peptidase N-terminal domain a... 51 3e-06
Alignment gi|XP_002699512.1| PREDICTED: LON peptidase N-terminal domain a... 51 3e-06
Alignment gi|XP_002707153.1| PREDICTED: LON peptidase N-terminal domain a... 51 3e-06
>ref|NP_001039681.1| E3 ubiquitin-protein ligase RNF8 [Bos taurus].
Length = 487
Score = 770 bits (1988), Expect = 0.0
Identities = 391/509 (76%), Positives = 421/509 (82%)
Frame = +1
Query: 136 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 315
MG+PGSLVT GRAG+RSWCLRRVGMN EWLLLEDG EVTVGRGFGVTYQLVSKICPLMIS
Sbjct: 1 MGDPGSLVTEGRAGERSWCLRRVGMNTEWLLLEDGNEVTVGRGFGVTYQLVSKICPLMIS 60
Query: 316 RNHCVLKQNAEGQWTITDNKKSAELITPYNFSGCI*MQWFGEGWQSLNGVWLNRERLEPL 495
RNHC+LKQNAEGQWTI DNK SLNGVWLNRERLEPL
Sbjct: 61 RNHCILKQNAEGQWTIKDNK-------------------------SLNGVWLNRERLEPL 95
Query: 496 KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK 675
KVYSIH+GDHIQLGVPLENKENAEYEYEVTE+DWER+YPCLS KSDQMMEKNKGLRTKRK
Sbjct: 96 KVYSIHKGDHIQLGVPLENKENAEYEYEVTEEDWERIYPCLSPKSDQMMEKNKGLRTKRK 155
Query: 676 FNLDELEGSGAEGPSTLKSKISKVSCEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGK 855
F+LDELEGSGAEGPS LKSKISK+SCEPGQ VKSH KGKVA Q +EYLDPKLT +PS K
Sbjct: 156 FSLDELEGSGAEGPSNLKSKISKLSCEPGQQVKSHGKGKVASQPSEYLDPKLTSFEPSVK 215
Query: 856 ALGAHVYPVPAKVVELQHRKQKASNPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNV 1035
GAHV P PAKV+EL +K+KASNPSASQSSLELFKVTMSRIL LKTQMQEKQ+AVLNV
Sbjct: 216 TTGAHVNPGPAKVIELLRKKKKASbjct: 216 ATDAHVYPSSTKVVALHHKKQKASSPSASQSSLELFKVTMSRILKLKTQMQEKQVAVLNV 275
Query: 1036 KKQTQKGNSKKIVKMEQELHDLXXXXXXXXXXXXXXXXXXXKTFQEEQQHLQGLEKEQGE 1215
K+QTQKGNSKKIVKME+EL DL KTFQEE+QHLQGLEK+QGE
Sbjct: 276 KRQTQKGNSKKIVKMEKELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEKDQGE 335
Query: 1216 EDLKQQLAQALQEHRALMEELNRSRKDFEAIIQAXXXXXXXXXXXXXXXXXXXXXVLSHM 1395
EDLKQQLAQALQEHRALMEELNRS+KDFEAIIQA VLSH+
Sbjct: 336 EDLKQQLAQALQEHRALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHV 395
Query: 1396 NDVLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
NDVLENELQCIICSEYFIEAVTLNCAHSFCS+CINEWMKRKVECPICRKDIKSKTHSLVL
Sbjct: 396 NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIKSKTHSLVL 455
Query: 1576 DNCINKMVDNLSSEVKERRVVLIKERKGE 1662
DNCINKMVDNLSSEVK+RR+VLI+ERK +
Sbjct: 456 DNCINKMVDNLSSEVKDRRIVLIRERKAK 484
>ref|XP_538896.2| PREDICTED: similar to CG6379-PA isoform 1 [Canis familiaris].
Length = 1090
Score = 756 bits (1952), Expect = 0.0
Identities = 387/507 (76%), Positives = 414/507 (81%)
Frame = +1
Query: 136 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 315
M EPGSLVTG RAG R WCLRR MNAEWLLLEDG EVT+GRGFGVTYQLVSKICPLMIS
Sbjct: 1 MEEPGSLVTGDRAGGRRWCLRRARMNAEWLLLEDGNEVTIGRGFGVTYQLVSKICPLMIS 60
Query: 316 RNHCVLKQNAEGQWTITDNKKSAELITPYNFSGCI*MQWFGEGWQSLNGVWLNRERLEPL 495
RNHCVLKQN EGQWTI DNK SLNGVWLNRERLEPL
Sbjct: 61 RNHCVLKQNVEGQWTIMDNK-------------------------SLNGVWLNRERLEPL 95
Query: 496 KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK 675
KVYSIH+GDHIQLGVPLENKENAEYEYEVTE+DWER+YPCL+ K+DQ++ KN+GLRTKRK
Sbjct: 96 KVYSIHKGDHIQLGVPLENKENAEYEYEVTEEDWERMYPCLAPKNDQIIGKNRGLRTKRK 155
Query: 676 FNLDELEGSGAEGPSTLKSKISKVSCEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGK 855
F+LDELEG GAEGPS LKSKISKVS +PGQPVKSH KG+VA Q +EYLDPKLT L+ S K
Sbjct: 156 FSLDELEGPGAEGPSHLKSKISKVSYKPGQPVKSHGKGEVASQPSEYLDPKLTSLELSEK 215
Query: 856 ALGAHVYPVPAKVVELQHRKQKASNPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNV 1035
A AHVYP KVV L H+KQKAS+PSASQSSLELFKVTMSRILKLKTQMQEKQ+AVLNV
Sbjct: 216 ATDAHVYPSSTKVVALHHKKQKASSPSASQSSLELFKVTMSRILKLKTQMQEKQVAVLNV 275
Query: 1036 KKQTQKGNSKKIVKMEQELHDLXXXXXXXXXXXXXXXXXXXKTFQEEQQHLQGLEKEQGE 1215
K+QTQKGNSKKIVKME+EL DL KTFQEE+QHLQGLEK+QGE
Sbjct: 276 KRQTQKGNSKKIVKMEKELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEKDQGE 335
Query: 1216 EDLKQQLAQALQEHRALMEELNRSRKDFEAIIQAXXXXXXXXXXXXXXXXXXXXXVLSHM 1395
EDLKQQLAQALQEHRALMEELNRS+KDFEAIIQA VLSH+
Sbjct: 336 EDLKQQLAQALQEHRALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHV 395
Query: 1396 NDVLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
NDVLENELQCIICSEYFIEAVTLNCAHSFCS+CINEWMKRKVECPICRKDIKSKTHSLVL
Sbjct: 396 NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIKSKTHSLVL 455
Query: 1576 DNCINKMVDNLSSEVKERRVVLIKERK 1656
DNCINKMVDNLSSEVK+RR+VLI+ERK
Sbjct: 456 DNCINKMVDNLSSEVKDRRIVLIRERK 482
>ref|XP_864751.1| PREDICTED: similar to CG6379-PA isoform 3 [Canis familiaris].
Length = 880
Score = 756 bits (1952), Expect = 0.0
Identities = 387/507 (76%), Positives = 414/507 (81%)
Frame = +1
Query: 136 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 315
M EPGSLVTG RAG R WCLRR MNAEWLLLEDG EVT+GRGFGVTYQLVSKICPLMIS
Sbjct: 1 MEEPGSLVTGDRAGGRRWCLRRARMNAEWLLLEDGNEVTIGRGFGVTYQLVSKICPLMIS 60
Query: 316 RNHCVLKQNAEGQWTITDNKKSAELITPYNFSGCI*MQWFGEGWQSLNGVWLNRERLEPL 495
RNHCVLKQN EGQWTI DNK SLNGVWLNRERLEPL
Sbjct: 61 RNHCVLKQNVEGQWTIMDNK-------------------------SLNGVWLNRERLEPL 95
Query: 496 KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK 675
KVYSIH+GDHIQLGVPLENKENAEYEYEVTE+DWER+YPCL+ K+DQ++ KN+GLRTKRK
Sbjct: 96 KVYSIHKGDHIQLGVPLENKSNPSASQSSLELFKVTMSRILMLKTQMQEKQVAVLNV 275
Query: 1036 KKQTQKGNSKKIVKMEQELHDLXXXXXXXXXXXXXXXXXXXKTFQEEQQHLQGLEKEQGE 1215
KKQT+KG+SKKIVKMEQEL DL KT QEEQQHL+GLEKE+GE
Sbjct: 276 KKQTKKGSSKKIVKMEQELQDLQSQLCAEQAQQQARVEQLEKTIQEEQQHLEGLEKEEGE 335
Query: 1216 EDLKQQLAQALQEHRALMEELNRSRKDFEAIIQAXXXXXXXXXXXXXXXXXXXXXVLSHM 1395
EDLKQQLAQALQE+R+L+EELNRS+K+FEAIIQA VLSHM
Sbjct: 336 EDLKQQLAQALQEYRSLVEELNRSKKNFEAIIQAKDKELEQTKEEKEKVQAQKEEVLSHM 395
Query: 1396 NDVLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
NDVLENELQCIICSEYF+EAVTLNCAHSFCS+CINEWMKRKVECPICRKDIKSKT SLVL
Sbjct: 396 NDVLENELQCIICSEYFVEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIKSKTRSLVL 455
Query: 1576 DNCINKMVDNLSSEVKERRVVLIKERKGE 1662
DNCI+KMVDNL+SEVKERR+VLI+ERKG+
Sbjct: 456 DNCISKMVDNLNSEVKERRIVLIRERKGK 484
>ref|NP_001192403.1| E3 ubiquitin-protein ligase CHFR [Bos taurus].
Length = 663
Score = 54.7 bits (130), Expect = 3e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 296 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSALCPTCRCPVERICKNHIL 355
Query: 1576 DNCI 1587
+N +
Sbjct: 356 NNLV 359
>ref|XP_002694492.1| PREDICTED: checkpoint with forkhead and ring finger domains [Bos
taurus].
Length = 651
Score = 54.7 bits (130), Expect = 3e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 284 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSALCPTCRCPVERICKNHIL 343
Query: 1576 DNCI 1587
+N +
Sbjct: 344 NNLV 347
>ref|XP_002694491.1| PREDICTED: checkpoint with forkhead and ring finger domains [Bos
taurus].
Length = 663
Score = 54.7 bits (130), Expect = 3e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 296 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSALCPTCRCPVERICKNHIL 355
Query: 1576 DNCI 1587
+N +
Sbjct: 356 NNLV 359
>ref|XP_002701732.1| PREDICTED: checkpoint with forkhead and ring finger domains [Bos
taurus].
Length = 651
Score = 54.7 bits (130), Expect = 3e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 284 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSALCPTCRCPVERICKNHIL 343
Query: 1576 DNCI 1587
+N +
Sbjct: 344 NNLV 347
>ref|NP_001033161.1| polycomb complex protein BMI-1 [Bos taurus].
Length = 326
Score = 53.9 bits (128), Expect = 5e-07
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTL-NCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLV--- 1572
L L C++C YFI+A T+ C HSFC CI +++ CPIC + KT L+
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV-HKTRPLLNIR 70
Query: 1573 ----LDNCINKMVDNL-SSEVKERR 1632
L + + K+V L +E+K RR
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>ref|>ref|XP_858620.1| PREDICTED: similar to Polycomb group ring finger 4 (Polycomb complex
protein BMI-1) (RING finger protein 51) isoform 4 [Canis
familiaris].
Length = 254
Score = 57.0 bits (136), Expect = 7e-08
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTL-NCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLV--- 1572
L L C++C YFI+A T+ C HSFC CI +++ CPIC + KT L+
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV-HKTRPLLNIR 70
Query: 1573 LDNCINKMVDNLSSEVKERR 1632
LD +NK + EV ++R
Sbjct: 71 LDRKVNKDKEKPKEEVNDKR 90
>ref|XP_856723.1| PREDICTED: similar to Ubiquitin ligase protein CHFR (Checkpoint with
forkhead and RING finger domains protein) isoform 4
[Canis familiaris].
Length = 648
Score = 54.7 bits (130), Expect = 3e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 294 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSTWCPTCRCPVERICKNHIL 353
Query: 1576 DNCI 1587
+N +
Sbjct: 354 NNLV 357
>ref|XP_534631.2| PREDICTED: similar to Ubiquitin ligase protein CHFR (Checkpoint with
forkhead and RING finger domains protein) isoform 1
[Canis familiaris].
Length = 648
Score = 54.7 bits (130), Expect = 3e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 294 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSTWCPTCRCPVERICKNHIL 353
Query: 1576 DNCI 1587
+N +
Sbjct: 354 NNLV 357
>ref|XP_848636.1| PREDICTED: similar to Ubiquitin ligase protein CHFR (Checkpoint with
forkhead and RING finger domains protein) isoform 2
[Canis familiaris].
Length = 649
Score = 54.7 bits (130), Expect = 3e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 294 DKMEETLTCIICQDLLHDCVSLQv/protein/NP_001178063.1>NP_001178063.1| LON peptidase N-terminal domain and RING finger protein 3 [Bos
taurus].
Length = 759
Score = 51.2 bits (121), Expect = 3e-06
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +1
Query: 1411 NELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDI------KSKTHSLV 1572
++L+C +C F E VT C H+FC C+ + +CP+C+ + + + +++
Sbjct: 463 SDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVI 522
Query: 1573 LDNCINKMVDNLSSEVKERR 1632
++ I K L E+KERR
Sbjct: 523 MEELIAKF---LPEELKERR 539
>ref|XP_002699513.1| PREDICTED: LON peptidase N-terminal domain and ring finger 3 isoform
2 [Bos taurus].
Length = 759
Score = 51.2 bits (121), Expect = 3e-06
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +1
Query: 1411 NELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDI------KSKTHSLV 1572
++L+C +C F E VT C H+FC C+ + +CP+C+ + + + +++
Sbjct: 463 SDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVI 522
Query: 1573 LDNCINKMVDNLSSEVKERR 1632
++ I K L E+KERR
Sbjct: 523 MEELIAKF---LPEELKERR 539
>ref|XP_002699512.1| PREDICTED: LON peptidase N-terminal domain and ring finger 3 isoform
1 [Bos taurus].
Length = 718
Score = 51.2 bits (121), Expect = 3e-06
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +1
Query: 1411 NELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDI------KSKTHSLV 1572
++L+C +C F E VT C H+FC C+ + +CP+C+ + + + +++
Sbjct: 422 SDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVI 481
Query: 1573 LDNCINKMVDNLSSEVKERR 1632
++ I K L E+KERR
Sbjct: 482 MEELIAKF---LPEELKERR 498
>ref|XP_002707153.1| PREDICTED: LON peptidase N-terminal domain and ring finger 3 [Bos
taurus].
Length = 718
Score = 51.2 bits (121), Expect = 3e-06
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +1
Query: 1411 NELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDI------KSKTHSLV 1572
++L+C +C F E VT C H+FC C+ + +CP+C+ + + + +++
Sbjct: 422 SDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVI 481
Query: 1573 LDNCINKMVDNLSSEVKERR 1632
++ I K L E+KERR
Sbjct: 482 MEELIAKF---LPEELKERR 498
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,418,868
Number of extensions: 1676100
Number of successful extensions: 6698
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 6628
Number of HSP's successfully gapped: 21
Length of query: 681
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 572
Effective length of database: 14,074,782
Effective search space: 8050775304
Effective search space used: 8050775304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
PCMHTFCAACYSGWMERSTWCPTCRCPVERICKNHIL 353
Query: 1576 DNCI 1587
+N +
Sbjct: 354 NNLV 357
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013254
(2043 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927699.2| PREDICTED: e3 ubiquitin-protein ligase RNF8 ... 862 0.0
Alignment gi|XP_003128197.2| PREDICTED: e3 ubiquitin-protein ligase RNF8-... 216 5e-56
Alignment gi|XP_001925081.2| PREDICTED: ret finger protein-like 4B-like [... 57 3e-08
Alignment gi|XP_003132901.1| PREDICTED: e3 ubiquitin-protein ligase CHFR ... 55 2e-07
Alignment gi|XP_001928490.1| PREDICTED: e3 ubiquitin-protein ligase CHFR ... 55 2e-07
Alignment gi|XP_003129797.2| PREDICTED: tripartite motif-containing prote... 55 2e-07
Alignment gi|NP_001121951.1| tripartite motif-containing protein 39 [Sus ... 54 3e-07
Alignment gi|XP_003130828.1| PREDICTED: polycomb complex protein BMI-1-li... 54 3e-07
Alignment gi|XP_003362260.1| PREDICTED: LOW QUALITY PROTEIN: RING finger ... 53 6e-07
Alignment gi|XP_003360480.1| PREDICTED: LON peptidase N-terminal domain a... 51 2e-06
>ref|XP_001927699.2| PREDICTED: e3 ubiquitin-protein ligase RNF8 [Sus scrofa].
Length = 487
Score = 862 bits (2227), Expect = 0.0
Identities = 441/509 (86%), Positives = 443/509 (87%)
Frame = +1
Query: 136 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 315
MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS
Sbjct: 1 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 60
Query: 316 RNHCVLKQNAEGQWTITDNKKSAELITPYNFSGCI*MQWFGEGWQSLNGVWLNRERLEPL 495
RNHCVLKQNAEGQWTITDNK SLNGVWLNRERLEPL
Sbjct: 61 RNHCVLKQNAEGQWTITDNK-------------------------SLNGVWLNRERLEPL 95
Query: 496 KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK 675
KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK
Sbjct: 96 KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK 155
Query: 676 FNLDELEGSGAEGPSTLKSKISKVSCEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGK 855
FNLDELEGSGAEGPSTLKSKISKVSCEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGK
Sbjct: 156 FNLDELEGSGAEGPSTLKSKISKVSCEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGK 215
Query: 856 ALGAHVYPVPAKVVELQHRKQKASNPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNV 1035
ALGAHVYPVPAKVVELQHRKQKASNPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNV
Sbjct: 216 ALGAHVYPVPAKVVELQHRKQKASNPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNV 275
Query: 1036 KKQTQKGNSKKIVKMEQELHDLXXXXXXXXXXXXXXXXXXXKTFQEEQQHLQGLEKEQGE 1215
KKQTQKGNSKKIVKMEQELHDL KTFQEEQQHLQGLEKEQGE
Sbjct: 276 KKQTQKGNSKKIVKMEQELHDLQSQLCAEQAQQQARVEQLEKTFQEEQQHLQGLEKEQGE 335
Query: 1216 EDLKQQLAQALQEHRALMEELNRSRKDFEAIIQAXXXXXXXXXXXXXXXXXXXXXVLSHM 1395
EDLKQQLAQALQEHRALMEELNRSRKDFEAIIQA VLSHM
Sbjct: 336 EDLKQQLAQALQEHRALMEELNRSRKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHM 395
Query: 1396 NDVLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
NDVLENELQCIICSEYFIEAVTLNCAHSFCS+CINEWMKRKVECPICRKDIKSKTHSLVL
Sbjct: 396 NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIKSKTHSLVL 455
Query: 1576 DNCINKMVDNLSSEVKERRVVLIKERKGE 1662
DNCINKMVDNLSSEVKERRVVLIKERK +
Sbjct: 456 DNCINKMVDNLSSEVKERRVVLIKERKAK 484
>ref|XP_003128197.2| PREDICTED: e3 ubiquitin-protein ligase RNF8-like [Sus scrofa].
Length = 135
Score = 216 bits (549), Expect = 5e-56
Identities = 108/132 (81%), Positives = 110/132 (83%)
Frame = +1
Query: 1267 MEELNRSRKDFEAIIQAXXXXXXXXXXXXXXXXXXXXXVLSHMNDVLENELQCIICSEYF 1446
MEELNRSRKDFEAIIQA VLSHMNDVLENELQCIICSEYF
Sbjct: 1 MEELNRSRKDFEAIIQAKNKELEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIICSEYF 60
Query: 1447 IEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVLDNCINKMVDNLSSEVKE 1626
IEAVTLNCAHSFCS+CINEWMKRKVECPICRKDIKSKTHSLVLDNCINKMVDNLSSEVKE
Sbjct: 61 IEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIKSKTHSLVLDNCINKMVDNLSSEVKE 120
Query: 1627 RRVVLIKERKGE 1662
RRVVLIKERK +
Sbjct: 121 RRVVLIKERKAK 132
>ref|XP_001925081.2| PREDICTED: ret finger protein-like 4B-like [Sus scrofa].
Length = 301
Score = 57.4 bits (137), Expect = 3e-08
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Frame = +1
Query: 1393 MNDVLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKR----KVECPICRKDIKS 1554
M + L++E C +C E F +TL+C H+FC +C+ WMK K+ CP+CR I++
Sbjct: 1 MANNLQDEAACTVCLEVFFSPITLSCTHTFCLYCMQSWMKEQEDLKLVCPMCRGVIEN 58
>ref|XP_003132901.1| PREDICTED: e3 ubiquitin-protein ligase CHFR isoform 2 [Sus scrofa].
Length = 570
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 203 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSTLCPTCRCPVERICKNHIL 262
Query: 1576 DNCI 1587
+N +
Sbjct: 263 NNLV 266
>ref|XP_001928490.1| PREDICTED: e3 ubiquitin-protein ligase CHFR isoform 1 [Sus scrofa].
Length = 660
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 293 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSTLCPTCRCPVERICKNHIL 352
Query: 1576 DNCI 1587
+N +
Sbjct: 353 NNLV 356
>ref|XP_003129797.2| PREDICTED: tripartite motif-containing protein 43-like [Sus scrofa].
Length = 456
Score = 54.7 bits (130), Expect = 2e-07
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 1381 VLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSFCI----NEWMKRKVECPICRKDI 1548
V + ++ V +NE C +C +YFI+ VTL C HSFC C+ E + CP+C
Sbjct: 6 VNAFLSRVFQNEFTCSLCDKYFIDPVTLGCGHSFCMPCLCLSWEEEAQHSPRCPVC---- 61
Query: 1549 KSKTHSLVL 1575
K K+H + L
Sbjct: 62 KEKSHQMNL 70
>ref|NP_001121951.1| tripartite motif-containing protein 39 [Sus scrofa].
Length = 488
Score = 54.3 bits (129), Expect = 3e-07
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEW---MKRKVECPICRKDIKSKTHSLVL 1575
L+ E C +C EY E V + C H+FC CI W ++R CP+CRK S+ SL
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK--TSRYRSLRP 80
Query: 1576 DNCINKMVD 1602
+ + MV+
Sbjct: 81 NRQLGSMVE 89
>ref|XP_003130828.1| PREDICTED: polycomb complex protein BMI-1-like [Sus scrofa].
Length = 326
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTL-NCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLV--- 1572
L L C++C YFI+A T+ C HSFC CI +++ CPIC + KT L+
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV-HKTRPLLNIR 70
Query: 1573 ----LDNCINKMVDNL-SSEVKERR 1632
L + + K+V L +E+K RR
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>ref|XP_003362260.1| PREDICTED: LOW QUALITY PROTEIN: RING finger protein 151-like, partial
[Sus scrofa].
Length = 240
Score = 53.1 bits (126), Expect = 6e-07
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = +1
Query: 1423 CIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVLDNCINKMVD 1602
C +C + V L C+H FC CI W+ R+ CP CRK++K K +V N + K +
Sbjct: 15 CSVCHGVLKKPVRLPCSHIFCKKCILHWLARQKTCPCCRKEVKRK--KMVHVNKLRKTIG 72
Query: 1603 NLSSEVKERRV 1635
L + K V
Sbjct: 73 RLEVKCKNAEV 83
>ref|XP_003360480.1| PREDICTED: LON peptidase N-terminal domain and RING finger protein 3
isoform 2 [Sus scrofa].
Length = 711
Score = 51.2 bits (121), Expect = 2e-06
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +1
Query: 1411 NELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDI------KSKTHSLV 1572
++L+C +C F E VT C H+FC C+ + +CP+C+ + + + +++
Sbjct: 415 SDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVI 474
Query: 1573 LDNCINKMVDNLSSEVKERR 1632
++ I K L E+KERR
Sbjct: 475 MEELIAKF---LPEELKERR 491
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,292,149
Number of extensions: 1068875
Number of successful extensions: 4201
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4162
Number of HSP's successfully gapped: 16
Length of query: 681
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 575
Effective length of database: 8,704,850
Effective search space: 5005288750
Effective search space used: 5005288750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013254
(2043 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067394.1| E3 ubiquitin-protein ligase RNF8 [Mus musculus]. 607 e-174
Alignment gi|NP_840065.1| tripartite motif-containing protein 39 [Mus mus... 54 4e-07
Alignment gi|NP_077788.2| tripartite motif-containing protein 39 [Mus mus... 54 4e-07
Alignment gi|NP_766305.2| E3 ubiquitin-protein ligase CHFR [Mus musculus]. 54 5e-07
Alignment gi|NP_031578.2| polycomb complex protein BMI-1 [Mus musculus]. 54 5e-07
Alignment gi|NP_001171254.1| ret finger protein-like 4B [Mus musculus]. 52 2e-06
Alignment gi|NP_084064.1| RING finger and transmembrane domain-containing... 52 2e-06
Alignment gi|NP_001156780.1| polycomb group RING finger protein 2 [Mus mu... 51 4e-06
Alignment gi|NP_001156779.1| polycomb group RING finger protein 2 [Mus mu... 51 4e-06
Alignment gi|NP_033571.1| polycomb group RING finger protein 2 [Mus muscu... 51 4e-06
>ref|NP_067394.1| E3 ubiquitin-protein ligase RNF8 [Mus musculus].
Length = 488
Score = 607 bits (1566), Expect = e-174
Identities = 322/510 (63%), Positives = 370/510 (72%), Gaps = 1/510 (0%)
Frame = +1
Query: 136 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 315
MGEP LV+G A RSWCLRR+GM+ EWL LE G EVT+GRG VTYQL+SK+CPLMIS
Sbjct: 1 MGEPDPLVSGQLAARRSWCLRRLGMDCEWLQLEAGTEVTIGRGLSVTYQLISKVCPLMIS 60
Query: 316 RNHCVLKQNAEGQWTITDNKKSAELITPYNFSGCI*MQWFGEGWQSLNGVWLNRERLEPL 495
R+HCVLKQN EGQWTI DNK SLNGVWLNRERL PL
Sbjct: 61 RSHCVLKQNPEGQWTIMDNK-------------------------SLNGVWLNRERLAPL 95
Query: 496 KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK 675
+ Y I +GDHIQLGVPLE++E AEYEYEV E+DWE + PCL+ K+DQ MEK+KG RTKRK
Sbjct: 96 QGYCIRKGDHIQLGVPLESRETAEYEYEVIEEDWESLAPCLAPKNDQRMEKHKGSRTKRK 155
Query: 676 FNLDELEGSGAEGPSTLKSKISKVSCEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGK 855
F+ LE AEG S L+ ++ V+ +P +P K H KG + Q L P LT L+ S +
Sbjct: 156 FSSPGLENLPAEGSSDLRCPLANVASKPIEPEKLHGKGDASSQSLGCLCPGLTSLKASER 215
Query: 856 ALGAHVYPVPAKVVELQ-HRKQKASNPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLN 1032
A G H KV+EL +KQKA PSASQ+SLELFKVTMSR+LKLKTQMQEKQIAVLN
Sbjct: 216 AAGPHACSALPKVLELSCPKKQKACRPSASQNSLELFKVTMSRMLKLKTQMQEKQIAVLN 275
Query: 1033 VKKQTQKGNSKKIVKMEQELHDLXXXXXXXXXXXXXXXXXXXKTFQEEQQHLQGLEKEQG 1212
VK+QT+KG+SKKIV+ME+EL +L KTFQEE +LQGLEKEQG
Sbjct: 276 VKRQTRKGSSKKIVRMEKELRNLQSQLYAEQAQQQARVEQLEKTFQEEAHYLQGLEKEQG 335
Query: 1213 EEDLKQQLAQALQEHRALMEELNRSRKDFEAIIQAXXXXXXXXXXXXXXXXXXXXXVLSH 1392
E DLKQQL QALQEH+ALMEELN S+KDFE IIQA VLSH
Sbjct: 336 ECDLKQQLVQALQEHQALMEELNCSKKDFEKIIQAKNKELEQTKEEKDKVQAQKEEVLSH 395
Query: 1393 MNDVLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLV 1572
MND+LENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDI+S+T+SLV
Sbjct: 396 MNDLLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIESRTNSLV 455
Query: 1573 LDNCINKMVDNLSSEVKERRVVLIKERKGE 1662
LDNCI+KMVDNLSS+VKERR VLI+ER+ +
Sbjct: 456 LDNCISKMVDNLSSDVKERRSVLIRERRAK 485
>ref|NP_840065.1| tripartite motif-containing protein 39 [Mus musculus].
Length = 488
Score = 54.3 bits (129), Expect = 4e-07
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEW---MKRKVECPICRKDIKSKTHSLVL 1575
L+ E C +C EY E V + C H+FC CI W ++R CP+CRK S+ SL
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK--TSRYRSLRP 80
Query: 1576 DNCINKMVD 1602
+ + MV+
Sbjct: 81 NRQLGSMVE 89
>ref|NP_077788.2| tripartite motif-containing protein 39 [Mus musculus].
Length = 488
Score = 54.3 bits (129), Expect = 4e-07
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEW---MKRKVECPICRKDIKSKTHSLVL 1575
L+ E C +C EY E V + C H+FC CI W ++R CP+CRK S+ SL
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK--TSRYRSLRP 80
Query: 1576 DNCINKMVD 1602
+ + MV+
Sbjct: 81 NRQLGSMVE 89
>ref|NP_766305.2| E3 ubiquitin-protein ligase CHFR [Mus musculus].
Length = 663
Score = 53.9 bits (128), Expect = 5e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 295 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHIL 354
Query: 1576 DNCI 1587
+N +
Sbjct: 355 NNLV 358
>ref|NP_031578.2| polycomb complex protein BMI-1 [Mus musculus].
Length = 324
Score = 53.9 bits (128), Expect = 5e-07
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTL-NCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLV--- 1572
L L C++C YFI+A T+ C HSFC CI +++ CPIC + KT L+
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV-HKTRPLLNIR 70
Query: 1573 ----LDNCINKMVDNL-SSEVKERR 1632
L + + K+V L +E+K RR
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>ref|NP_001171254.1| ret finger protein-like 4B [Mus musculus].
Length = 266
Score = 52.0 bits (123), Expect = 2e-06
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +1
Query: 1393 MNDVLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRK----VECPICRKDIK 1551
M ++LE E C IC + + + L+CAH C C +WM +K + CP+CRK+ K
Sbjct: 21 MENILEMEATCAICLDIYSHPIYLSCAHILCFDCGKKWMTKKEDLIMTCPVCRKEQK 77
>ref|NP_084064.1| RING finger and transmembrane domain-containing protein 1 [Mus
musculus].
Length = 395
Score = 52.0 bits (123), Expect = 2e-06
Identities = 25/64 (39%), Positives = 30/64 (46%)
Frame = +1
Query: 1423 CIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVLDNCINKMVD 1602
C IC F + V L C H FC CI W R+ CP+CR V+ CINK D
Sbjct: 335 CTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCR---------TVISECINKWKD 385
Query: 1603 NLSS 1614
+S
Sbjct: 386 GATS 389
>ref|NP_001156780.1| polycomb group RING finger protein 2 [Mus musculus].
Length = 342
Score = 50.8 bits (120), Expect = 4e-06
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTL-NCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLV--- 1572
L L C +C YFI+A T+ C HSFC CI +++ CP+C + KT L+
Sbjct: 12 LNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQV-HKTRPLLSIR 70
Query: 1573 ----LDNCINKMVDNL-SSEVKERR 1632
L + + K+V L E+K RR
Sbjct: 71 SDKTLQDIVYKLVPGLFKDEMKRRR 95
>ref|NP_001156779.1| polycomb group RING finger protein 2 [Mus musculus].
Length = 342
Score = 50.8 bits (120), Expect = 4e-06
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTL-NCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLV--- 1572
L L C +C YFI+A T+ C HSFC CI +++ CP+C + KT L+
Sbjct: 12 LNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQV-HKTRPLLSIR 70
Query: 1573 ----LDNCINKMVDNL-SSEVKERR 1632
L + + K+V L E+K RR
Sbjct: 71 SDKTLQDIVYKLVPGLFKDEMKRRR 95
>ref|NP_033571.1| polycomb group RING finger protein 2 [Mus musculus].
Length = 342
Score = 50.8 bits (120), Expect = 4e-06
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTL-NCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLV--- 1572
L L C +C YFI+A T+ C HSFC CI +++ CP+C + KT L+
Sbjct: 12 LNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQV-HKTRPLLSIR 70
Query: 1573 ----LDNCINKMVDNL-SSEVKERR 1632
L + + K+V L E+K RR
Sbjct: 71 SDKTLQDIVYKLVPGLFKDEMKRRR 95
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,076,570
Number of extensions: 1456331
Number of successful extensions: 5883
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5777
Number of HSP's successfully gapped: 13
Length of query: 681
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 573
Effective length of database: 12,373,671
Effective search space: 7090113483
Effective search space used: 7090113483
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013254
(2043 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003949.1| E3 ubiquitin-protein ligase RNF8 isoform 1 [Hom... 707 0.0
Alignment gi|NP_898901.1| E3 ubiquitin-protein ligase RNF8 isoform 2 [Hom... 575 e-164
Alignment gi|NP_001157869.1| putative tripartite motif-containing protein... 56 1e-07
Alignment gi|NP_001129958.1| tripartite motif-containing protein 64 [Homo... 55 2e-07
Alignment gi|NP_001193560.1| putative tripartite motif-containing protein... 55 3e-07
Alignment gi|NP_001186048.1| TRIM39-RPP21 protein [Homo sapiens]. 54 4e-07
Alignment gi|NP_742013.1| tripartite motif-containing protein 39 isoform ... 54 4e-07
Alignment gi|NP_067076.2| tripartite motif-containing protein 39 isoform ... 54 4e-07
Alignment gi|NP_005171.4| polycomb complex protein BMI-1 [Homo sapiens]. 54 6e-07
Alignment gi|NP_001154819.1| E3 ubiquitin-protein ligase CHFR isoform 5 [... 54 6e-07
>ref|NP_003949.1| E3 ubiquitin-protein ligase RNF8 isoform 1 [Homo sapiens].
Length = 485
Score = 707 bits (1826), Expect = 0.0
Identities = 368/509 (72%), Positives = 401/509 (78%)
Frame = +1
Query: 136 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 315
MGEPG VTG RAG RSWCLRRVGM+A WLLLEDG EVTVGRGFGVTYQLVSKICPLMIS
Sbjct: 1 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS 60
Query: 316 RNHCVLKQNAEGQWTITDNKKSAELITPYNFSGCI*MQWFGEGWQSLNGVWLNRERLEPL 495
RNHCVLKQN EGQWTI DNK SLNGVWLNR RLEPL
Sbjct: 61 RNHCVLKQNPEGQWTIMDNK-------------------------SLNGVWLNRARLEPL 95
Query: 496 KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK 675
+VYSIH+GD+IQLGVPLENKENAEYEYEVTE+DWE +YPCLS K+DQM+EKNK LRTKRK
Sbjct: 96 RVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRK 155
Query: 676 FNLDELEGSGAEGPSTLKSKISKVSCEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGK 855
F+LDEL G GAEGPS LKSKI+KVSCE GQPVKS KG+VA ++ LDPKLT L+PS K
Sbjct: 156 FSLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGKGEVASTPSDNLDPKLTALEPS-K 214
Query: 856 ALGAHVYPVPAKVVELQHRKQKASNPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNV 1035
GA +YP KV E+ H +QKASN SASQ SL++FKVTMSRIL+LK QMQEK AV+NV
Sbjct: 215 TTGAPIYPGFPKVTEV-HHEQKASNSSASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNV 273
Query: 1036 KKQTQKGNSKKIVKMEQELHDLXXXXXXXXXXXXXXXXXXXKTFQEEQQHLQGLEKEQGE 1215
KKQTQKGNSKK+V+MEQEL DL KTFQEE+QHLQGLE QGE
Sbjct: 274 KKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGE 333
Query: 1216 EDLKQQLAQALQEHRALMEELNRSRKDFEAIIQAXXXXXXXXXXXXXXXXXXXXXVLSHM 1395
+DLKQQLAQALQEH ALMEELNRS+KDFEAIIQA VLSHM
Sbjct: 334 KDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHM 393
Query: 1396 NDVLENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
NDVLENELQCIICSEYFIEAVTLNCAHSFCS+CINEWMKRK+ECPICRKDIKSKT+SLVL
Sbjct: 394 NDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVL 453
Query: 1576 DNCINKMVDNLSSEVKERRVVLIKERKGE 1662
DNCINKMV+NLSSEVKERR+VLI+ERK +
Sbjct: 454 DNCINKMVNNLSSEVKERRIVLIRERKAK 482
>ref|NP_898901.1| E3 ubiquitin-protein ligase RNF8 isoform 2 [Homo sapiens].
Length = 448
Score = 575 bits (1481), Expect = e-164
Identities = 306/439 (69%), Positives = 332/439 (75%)
Frame = +1
Query: 136 MGEPGSLVTGGRAGDRSWCLRRVGMNAEWLLLEDGKEVTVGRGFGVTYQLVSKICPLMIS 315
MGEPG VTG RAG RSWCLRRVGM+A WLLLEDG EVTVGRGFGVTYQLVSKICPLMIS
Sbjct: 1 MGEPGFFVTGDRAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMIS 60
Query: 316 RNHCVLKQNAEGQWTITDNKKSAELITPYNFSGCI*MQWFGEGWQSLNGVWLNRERLEPL 495
RNHCVLKQN EGQWTI DNK SLNGVWLNR RLEPL
Sbjct: 61 RNHCVLKQNPEGQWTIMDNK-------------------------SLNGVWLNRARLEPL 95
Query: 496 KVYSIHEGDHIQLGVPLENKENAEYEYEVTEDDWERVYPCLSLKSDQMMEKNKGLRTKRK 675
+VYSIH+GD+IQLGVPLENKENAEYEYEVTE+DWE +YPCLS K+DQM+EKNK LRTKRK
Sbjct: 96 RVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKNDQMIEKNKELRTKRK 155
Query: 676 FNLDELEGSGAEGPSTLKSKISKVSCEPGQPVKSHEKGKVAGQLNEYLDPKLTCLQPSGK 855
F+LDEL G GAEGPS LKSKI+KVSCE GQPVKS KG+VA ++ LDPKLT L+PS K
Sbjct: 156 FSLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGKGEVASTPSDNLDPKLTALEPS-K 214
Query: 856 ALGAHVYPVPAKVVELQHRKQKASNPSASQSSLELFKVTMSRILKLKTQMQEKQIAVLNV 1035
GA +YP KV E+ H +QKASN SASQ SL++FKVTMSRIL+LK QMQEK AV+NV
Sbjct: 215 TTGAPIYPGFPKVTEV-HHEQKASNSSASQRSLQMFKVTMSRILRLKIQMQEKHEAVMNV 273
Query: 1036 KKQTQKGNSKKIVKMEQELHDLXXXXXXXXXXXXXXXXXXXKTFQEEQQHLQGLEKEQGE 1215
KKQTQKGNSKK+V+MEQEL DL KTFQEE+QHLQGLE QGE
Sbjct: 274 KKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGE 333
Query: 1216 EDLKQQLAQALQEHRALMEELNRSRKDFEAIIQAXXXXXXXXXXXXXXXXXXXXXVLSHM 1395
+DLKQQLAQALQEH ALMEELNRS+KDFEAIIQA VLSHM
Sbjct: 334 KDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHM 393
Query: 1396 NDVLENELQCIICSEYFIE 1452
NDVLENELQCIICSEYFIE
Sbjct: 394 NDVLENELQCIICSEYFIE 412
>ref|NP_001157869.1| putative tripartite motif-containing protein 64B [Homo sapiens].
Length = 449
Score = 55.8 bits (133), Expect = 1e-07
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +1
Query: 1402 VLENELQCIICSEYFIEAVTLNCAHSFCSFCI---NEWMKRKVECPICRKDIKSKTHSLV 1572
V +NEL C IC YFI+ VT++C HSFC C+ +E + + CP CRK + +
Sbjct: 8 VFQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSEEGRAPMRCPSCRKTSEKPNFN-- 65
Query: 1573 LDNCINKMVDNLSSEVKERRV 1635
N + K + +L+ + + + +
Sbjct: 66 -TNLVLKKLSSLARQTRPQNI 85
>ref|NP_001129958.1| tripartite motif-containing protein 64 [Homo sapiens].
Length = 449
Score = 55.1 bits (131), Expect = 2e-07
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +1
Query: 1402 VLENELQCIICSEYFIEAVTLNCAHSFCSFCI---NEWMKRKVECPICRKDIKSKTHSLV 1572
V +NEL C IC YFI+ VT++C HSFC C+ +E + + CP CRK + +
Sbjct: 8 VFQNELICCICVNYFIDPVTIDCGHSFCRPCLCLCSEEGRAPMRCPSCRKISEKPNFN-- 65
Query: 1573 LDNCINKMVDNLSSEVKERRV 1635
N + K + +L+ + + + +
Sbjct: 66 -TNVVLKKLSSLARQTRPQNI 85
>ref|NP_001193560.1| putative tripartite motif-containing protein 64C [Homo sapiens].
Length = 450
Score = 54.7 bits (130), Expect = 3e-07
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +1
Query: 1402 VLENELQCIICSEYFIEAVTLNCAHSFCSFCI---NEWMKRKVECPICRK 1542
V +NEL C IC YFI+ VT +C HSFC C+ +E + + CP+CRK
Sbjct: 8 VFQNELICCICVNYFIDPVTTDCVHSFCRPCLCLCSEEGRAPMRCPLCRK 57
>ref|NP_001186048.1| TRIM39-RPP21 protein [Homo sapiens].
Length = 503
Score = 54.3 bits (129), Expect = 4e-07
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEW---MKRKVECPICRKDIKSKTHSLVL 1575
L+ E C +C EY E V + C H+FC CI W ++R CP+CRK S+ SL
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK--TSRYRSLRP 80
Query: 1576 DNCINKMVD 1602
+ + MV+
Sbjct: 81 NRQLGSMVE 89
>ref|NP_742013.1| tripartite motif-containing protein 39 isoform 2 [Homo sapiens].
Length = 488
Score = 54.3 bits (129), Expect = 4e-07
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEW---MKRKVECPICRKDIKSKTHSLVL 1575
L+ E C +C EY E V + C H+FC CI W ++R CP+CRK S+ SL
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK--TSRYRSLRP 80
Query: 1576 DNCINKMVD 1602
+ + MV+
Sbjct: 81 NRQLGSMVE 89
>ref|NP_067076.2| tripartite motif-containing protein 39 isoform 1 [Homo sapiens].
Length = 518
Score = 54.3 bits (129), Expect = 4e-07
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEW---MKRKVECPICRKDIKSKTHSLVL 1575
L+ E C +C EY E V + C H+FC CI W ++R CP+CRK S+ SL
Sbjct: 23 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRK--TSRYRSLRP 80
Query: 1576 DNCINKMVD 1602
+ + MV+
Sbjct: 81 NRQLGSMVE 89
>ref|NP_005171.4| polycomb complex protein BMI-1 [Homo sapiens].
Length = 326
Score = 53.9 bits (128), Expect = 6e-07
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Frame = +1
Query: 1405 LENELQCIICSEYFIEAVTL-NCAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLV--- 1572
L L C++C YFI+A T+ C HSFC CI +++ CPIC + KT L+
Sbjct: 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV-HKTRPLLNIR 70
Query: 1573 ----LDNCINKMVDNL-SSEVKERR 1632
L + + K+V L +E+K RR
Sbjct: 71 SDKTLQDIVYKLVPGLFKNEMKRRR 95
>ref|NP_001154819.1| E3 ubiquitin-protein ligase CHFR isoform 5 [Homo sapiens].
Length = 572
Score = 53.9 bits (128), Expect = 6e-07
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 1399 DVLENELQCIICSEYFIEAVTLN-CAHSFCSFCINEWMKRKVECPICRKDIKSKTHSLVL 1575
D +E L CIIC + + V+L C H+FC+ C + WM+R CP CR ++ + +L
Sbjct: 204 DKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHIL 263
Query: 1576 DNCI 1587
+N +
Sbjct: 264 NNLV 267
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,212,553
Number of extensions: 1716632
Number of successful extensions: 6984
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 6902
Number of HSP's successfully gapped: 22
Length of query: 681
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 572
Effective length of database: 14,704,088
Effective search space: 8410738336
Effective search space used: 8410738336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013254
(2043 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1164 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1164 bits (587), Expect = 0.0
Identities = 587/587 (100%)
Strand = Plus / Plus
Query: 448 cagagtctgaatggtgtttggctgaacagagaacgtctagaacctttaaaggtctattct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418166 cagagtctgaatggtgtttggctgaacagagaacgtctagaacctttaaaggtctattct 418225
Query: 508 atccatgagggagaccacatccagcttggggtgcctctggaaaataaggagaatgcggag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418226 atccatgagggagaccacatccagcttggggtgcctctggaaaataaggagaatgcggag 418285
Query: 568 tatgaatatgaagttaccgaagacgactgggagagggtttatccttgtctgtccctaaag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418286 tatgaatatgaagttaccgaagacgactgggagagggtttatccttgtctgtccctaaag 418345
Query: 628 agtgaccaaatgatggaaaagaataagggcttgagaactaaaaggaagtttaatttggat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418346 agtgaccaaatgatggaaaagaataagggcttgagaactaaaaggaagtttaatttggat 418405
Query: 688 gagttagagggttctggagctgaaggcccctcaactttgaaatccaaaataagtaaagtg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418406 gagttagagggttctggagctgaaggcccctcaactttgaaatccaaaataagtaaagtg 418465
Query: 748 tcttgtgaacctggtcaaccagtgaagtcacatgagaaaggtaaagtggctggtcagctc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418466 tcttgtgaacctggtcaaccagtgaagtcacatgagaaaggtaaagtggctggtcagctc 418525
Query: 808 aatgaatatttggatcctaagttgacttgtcttcagccaagtgggaaggccctgggggct 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418526 aatgaatatttggatcctaagttgacttgtcttcagccaagtgggaaggccctgggggct 418585
Query: 868 catgtttacccagtccctgcaaaagtcgtagagcttcagcacaggaagcagaaagcctca 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418586 catgtttacccagtccctgcaaaagtcgtagagcttcagcacaggaagcagaaagcctca 418645
Query: 928 aacccttcagcatctcagagcagcttagagctgtttaaggtcaccatgtccaggattcta 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418646 aacccttcagcatctcagagcagcttagagctgtttaaggtcaccatgtccaggattcta 418705
Query: 988 aagctgaaaacacagatgcaggaaaaacagatcgctgttctgaatgt 1034
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418706 aagctgaaaacacagatgcaggaaaaacagatcgctgttctgaatgt 418752
Score = 1164 bits (587), Expect = 0.0
Identities = 587/587 (100%)
Strand = Plus / Plus
Query: 448 cagagtctgaatggtgtttggctgaacagagaacgtctagaacctttaaaggtctattct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854755 cagagtctgaatggtgtttggctgaacagagaacgtctagaacctttaaaggtctattct 37854814
Query: 508 atccatgagggagaccacatccagcttggggtgcctctggaaaataaggagaatgcggag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854815 atccatgagggagaccacatccagcttggggtgcctctggaaaataaggagaatgcggag 37854874
Query: 568 tatgaatatgaagttaccgaagacgactgggagagggtttatccttgtctgtccctaaag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854875 tatgaatatgaagttaccgaagacgactgggagagggtttatccttgtctgtccctaaag 37854934
Query: 628 agtgaccaaatgatggaaaagaataagggcttgagaactaaaaggaagtttaatttggat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854935 agtgaccaaatgatggaaaagaataagggcttgagaactaaaaggaagtttaatttggat 37854994
Query: 688 gagttagagggttctggagctgaaggcccctcaactttgaaatccaaaataagtaaagtg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37854995 gagttagagggttctggagctgaaggcccctcaactttgaaatccaaaataagtaaagtg 37855054
Query: 748 tcttgtgaacctggtcaaccagtgaagtcacatgagaaaggtaaagtggctggtcagctc 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855055 tcttgtgaacctggtcaaccagtgaagtcacatgagaaaggtaaagtggctggtcagctc 37855114
Query: 808 aatgaatatttggatcctaagttgacttgtcttcagccaagtgggaaggccctgggggct 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855115 aatgaatatttggatcctaagttgacttgtcttcagccaagtgggaaggccctgggggct 37855174
Query: 868 catgtttacccagtccctgcaaaagtcgtagagcttcagcacaggaagcagaaagcctca 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855175 catgtttacccagtccctgcaaaagtcgtagagcttcagcacaggaagcagaaagcctca 37855234
Query: 928 aacccttcagcatctcagagcagcttagagctgtttaaggtcaccatgtccaggattcta 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855235 aacccttcagcatctcagagcagcttagagctgtttaaggtcaccatgtccaggattcta 37855294
Query: 988 aagctgaaaacacagatgcaggaaaaacagatcgctgttctgaatgt 1034
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855295 aagctgaaaacacagatgcaggaaaaacagatcgctgttctgaatgt 37855341
Score = 1094 bits (552), Expect = 0.0
Identities = 581/593 (97%)
Strand = Plus / Plus
Query: 1451 aggctgtcaccttgaactgtgcccatagtttctgctccttctgtatcaatgagtggatga 1510
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384285 aggctgtcaccttgaactgtgcccatagtttctgctcctactgtatcaatgagtggatga 384344
Query: 1511 agcggaaggtagaatgccccatttgtcggaaggacatcaagtccaaaacacactccctgg 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384345 agcggaaggtagaatgccccatttgtcggaaggacatcaagtccaaaacacactccctgg 384404
Query: 1571 ttctggacaattgcattaataagatggtagataatctgagctcagaagtgaaagaacgac 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384405 ttctggacaattgcattaataagatggtagataatctgagctcagaagtgaaagaacgac 384464
Query: 1631 gagttgttctcatcaaggaacgaaaaggtgagtgggtctgaacaagaggtgagtcccctc 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384465 gagttgttctcatcaaggaacgaaaaggtgagtgggtctgaacaagaggtgagtcccctc 384524
Query: 1691 aaccaaaggcttaggatgannnnnnnggatggagaggagtcaacataaatgattcttttg 1750
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384525 aaccaaaggcttaggatgatttttttggatggagaggagtcaacataaatgattcttttg 384584
Query: 1751 ttttgttttgtttaaagattcttgagctaagtgagaattggaagatatgggggaaagtaa 1810
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384585 ttttgttttgtttaaagattcttgagctaagtgagaattggaagaaatgggggaaagtaa 384644
Query: 1811 agcaagttaaagatagtgaatgtgtaagagttgaggtagaataaactaatatttgagcag 1870
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384645 agcaagttaaagatagtgaatgtgtaagagttgaggtagaataaactattatttgagcag 384704
Query: 1871 cagggaatggtatggcttgggtgtacatgtcttggttgctggcataaagatgtgattaga 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384705 cagggaatggtatggcttgggtgtacatgtcttggttgctggcataaagatgtgattaga 384764
Query: 1931 aaacagtttgctgtgctggtcactagatggtgctgtttgtcaagacagtttagttgctgt 1990
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 384765 aaacagtttgctgtgctggtcactagatggtgctgttgttcaagacagtttagttgctgt 384824
Query: 1991 ccatgtgtcattaaaaaccttgggtgtataataaattataaataggatgtgta 2043
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384825 ccatgtgtcattaaaaaccttgggtgtataataaattataaataggatgtgta 384877
Score = 1094 bits (552), Expect = 0.0
Identities = 581/593 (97%)
Strand = Plus / Plus
Query: 1451 aggctgtcaccttgaactgtgcccatagtttctgctccttctgtatcaatgagtggatga 1510
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 37865571 aggctgtcaccttgaactgtgcccatagtttctgctcctactgtatcaatgagtggatga 37865630
Query: 1511 agcggaaggtagaatgccccatttgtcggaaggacatcaagtccaaaacacactccctgg 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37865631 agcggaaggtagaatgccccatttgtcggaaggacatcaagtccaaaacacactccctgg 37865690
Query: 1571 ttctggacaattgcattaataagatggtagataatctgagctcagaagtgaaagaacgac 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37865691 ttctggacaattgcattaataagatggtagataatctgagctcagaagtgaaagaacgac 37865750
Query: 1631 gagttgttctcatcaaggaacgaaaaggtgagtgggtctgaacaagaggtgagtcccctc 1690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37865751 gagttgttctcatcaaggaacgaaaaggtgagtgggtctgaacaagaggtgagtcccctc 37865810
Query: 1691 aaccaaaggcttaggatgannnnnnnggatggagaggagtcaacataaatgattcttttg 1750
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 37865811 aaccaaaggcttaggatgatttttttggatggagaggagtcaacataaatgattcttttg 37865870
Query: 1751 ttttgttttgtttaaagattcttgagctaagtgagaattggaagatatgggggaaagtaa 1810
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 37865871 ttttgttttgtttaaagattcttgagctaagtgagaattggaagaaatgggggaaagtaa 37865930
Query: 1811 agcaagttaaagatagtgaatgtgtaagagttgaggtagaataaactaatatttgagcag 1870
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 37865931 agcaagttaaagatagtgaatgtgtaagagttgaggtagaataaactattatttgagcag 37865990
Query: 1871 cagggaatggtatggcttgggtgtacatgtcttggttgctggcataaagatgtgattaga 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37865991 cagggaatggtatggcttgggtgtacatgtcttggttgctggcataaagatgtgattaga 37866050
Query: 1931 aaacagtttgctgtgctggtcactagatggtgctgtttgtcaagacagtttagttgctgt 1990
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 37866051 aaacagtttgctgtgctggtcactagatggtgctgttgttcaagacagtttagttgctgt 37866110
Query: 1991 ccatgtgtcattaaaaaccttgggtgtataataaattataaataggatgtgta 2043
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37866111 ccatgtgtcattaaaaaccttgggtgtataataaattataaataggatgtgta 37866163
Score = 494 bits (249), Expect = e-136
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 2 gattgcttctgtctgtactgttagtatggcgtccgcgagaaagcggagaggcggcgggaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470276 gattgcttctgtctgtactgttagtatggcgtccgcgagaaagcggagaggcggcgggaa 470335
Query: 62 ctcgggtcgggttctcgctctgtgctgacagcaacctcgctctgtactgacagcaaccca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470336 ctcgggtcgggttctcgctctgtgctgacagcaacctcgctctgtactgacagcaaccca 470395
Query: 122 gggccgagtgggctatgggggagcccggctccctggtcacgggaggccgcgccggtgacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470396 gggccgagtgggctatgggggagcccggctccctggtcacgggaggccgcgccggtgacc 470455
Query: 182 ggagctggtgcttgcggcgggtggggatgaacgccgagtggctgctgctggaggacggaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470456 ggagctggtgcttgcggcgggtggggatgaacgccgagtggctgctgctggaggacggaa 470515
Query: 242 aagaggtga 250
|||||||||
Sbjct: 470516 aagaggtga 470524
Score = 494 bits (249), Expect = e-136
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 2 gattgcttctgtctgtactgttagtatggcgtccgcgagaaagcggagaggcggcgggaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37836077 gattgcttctgtctgtactgttagtatggcgtccgcgagaaagcggagaggcggcgggaa 37836136
Query: 62 ctcgggtcgggttctcgctctgtgctgacagcaacctcgctctgtactgacagcaaccca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37836137 ctcgggtcgggttctcgctctgtgctgacagcaacctcgctctgtactgacagcaaccca 37836196
Query: 122 gggccgagtgggctatgggggagcccggctccctggtcacgggaggccgcgccggtgacc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37836197 gggccgagtgggctatgggggagcccggctccctggtcacgggaggccgcgccggtgacc 37836256
Query: 182 ggagctggtgcttgcggcgggtggggatgaacgccgagtggctgctgctggaggacggaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37836257 ggagctggtgcttgcggcgggtggggatgaacgccgagtggctgctgctggaggacggaa 37836316
Query: 242 aagaggtga 250
|||||||||
Sbjct: 37836317 aagaggtga 37836325
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 245 aggtgactgtaggtcgaggatttggtgtcacataccagttggtttcaaaaatttgccctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408075 aggtgactgtaggtcgaggatttggtgtcacataccagttggtttcaaaaatttgccctc 408134
Query: 305 tgatgatttcccgaaaccactgtgtcttgaagcagaatgccgagggccagtggacaatta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408135 tgatgatttcccgaaaccactgtgtcttgaagcagaatgccgagggccagtggacaatta 408194
Query: 365 cggacaacaag 375
|||||||||||
Sbjct: 408195 cggacaacaag 408205
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 245 aggtgactgtaggtcgaggatttggtgtcacataccagttggtttcaaaaatttgccctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37844745 aggtgactgtaggtcgaggatttggtgtcacataccagttggtttcaaaaatttgccctc 37844804
Query: 305 tgatgatttcccgaaaccactgtgtcttgaagcagaatgccgagggccagtggacaatta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37844805 tgatgatttcccgaaaccactgtgtcttgaagcagaatgccgagggccagtggacaatta 37844864
Query: 365 cggacaacaag 375
|||||||||||
Sbjct: 37844865 cggacaacaag 37844875
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1079 tggagcaggaactgcacgatttacagtcccagctgtgtgcagagcaggcccagcagcagg 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418797 tggagcaggaactgcacgatttacagtcccagctgtgtgcagagcaggcccagcagcagg 418856
Query: 1139 ccagagtggagcagctggagaagactttccaggaagagcagcagcacctgcagg 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418857 ccagagtggagcagctggagaagactttccaggaagagcagcagcacctgcagg 418910
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1079 tggagcaggaactgcacgatttacagtcccagctgtgtgcagagcaggcccagcagcagg 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855386 tggagcaggaactgcacgatttacagtcccagctgtgtgcagagcaggcccagcagcagg 37855445
Query: 1139 ccagagtggagcagctggagaagactttccaggaagagcagcagcacctgcagg 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37855446 ccagagtggagcagctggagaagactttccaggaagagcagcagcacctgcagg 37855499
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1343 aggaagagaaggagaaggtgcaagcacagaaggaggaagttcttagccacatgaatgacg 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381877 aggaagagaaggagaaggtgcaagcacagaaggaggaagttcttagccacatgaatgacg 381936
Query: 1403 tgctagaaaacgagcttcagtgtattatttgctcagaatacttcattgagg 1453
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381937 tgctagaaaacgagcttcagtgtattatttgctcagaatacttcattgagg 381987
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1343 aggaagagaaggagaaggtgcaagcacagaaggaggaagttcttagccacatgaatgacg 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37862698 aggaagagaaggagaaggtgcaagcacagaaggaggaagttcttagccacatgaatgacg 37862757
Query: 1403 tgctagaaaacgagcttcagtgtattatttgctcagaatacttcattgagg 1453
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37862758 tgctagaaaacgagcttcagtgtattatttgctcagaatacttcattgagg 37862808
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1253 agcatcgggctctgatggaagagctaaaccgcagcaggaaggactttgaagcaatcattc 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379391 agcatcgggctctgatggaagagctaaaccgcagcaggaaggactttgaagcaatcattc 379450
Query: 1313 aagccaagaacaaagagctggagcagaccaagg 1345
|||||||||||||||||||||||||||||||||
Sbjct: 379451 aagccaagaacaaagagctggagcagaccaagg 379483
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1253 agcatcgggctctgatggaagagctaaaccgcagcaggaaggactttgaagcaatcattc 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37860497 agcatcgggctctgatggaagagctaaaccgcagcaggaaggactttgaagcaatcattc 37860556
Query: 1313 aagccaagaacaaagagctggagcagaccaagg 1345
|||||||||||||||||||||||||||||||||
Sbjct: 37860557 aagccaagaacaaagagctggagcagaccaagg 37860589
Score = 153 bits (77), Expect = 5e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 374 agaagtctgcagaactgatcactccctataatttctcaggctgcatatgaatgcagtggt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416381 agaagtctgcagaactgatcactccctataatttctcaggctgcatatgaatgcagtggt 416440
Query: 434 tcggagaaggttggcag 450
|||||||||||||||||
Sbjct: 416441 tcggagaaggttggcag 416457
Score = 153 bits (77), Expect = 5e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 374 agaagtctgcagaactgatcactccctataatttctcaggctgcatatgaatgcagtggt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37852970 agaagtctgcagaactgatcactccctataatttctcaggctgcatatgaatgcagtggt 37853029
Query: 434 tcggagaaggttggcag 450
|||||||||||||||||
Sbjct: 37853030 tcggagaaggttggcag 37853046
Score = 135 bits (68), Expect = 1e-28
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1187 tgcagggtttggagaaagagcaaggagaagaggacctgaagcaacagctggcccaggccc 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421498 tgcagggtttggagaaagagcaaggagaagaggacctgaagcaacagctggcccaggccc 421557
Query: 1247 tgcaggag 1254
||||||||
Sbjct: 421558 tgcaggag 421565
Score = 135 bits (68), Expect = 1e-28
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1187 tgcagggtttggagaaagagcaaggagaagaggacctgaagcaacagctggcccaggccc 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37858087 tgcagggtttggagaaagagcaaggagaagaggacctgaagcaacagctggcccaggccc 37858146
Query: 1247 tgcaggag 1254
||||||||
Sbjct: 37858147 tgcaggag 37858154
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 64,401,186
Number of extensions: 34166
Number of successful extensions: 34166
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 34160
Number of HSP's successfully gapped: 18
Length of query: 2043
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2021
Effective length of database: 2,808,408,574
Effective search space: 5675793728054
Effective search space used: 5675793728054
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)