Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013255
(1260 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_610497.4| PREDICTED: serine hydrolase-like 2 [Bos taurus]. 500 e-142
Alignment gi|XP_002688016.1| PREDICTED: serine hydrolase-like 2 [Bos taur... 439 e-123
Alignment gi|NP_001069323.2| abhydrolase domain containing 7 [Bos taurus]. 53 7e-07
Alignment gi|NP_001180105.1| epoxide hydrolase 3 [Bos taurus]. 50 3e-06
Alignment gi|XP_002688608.1| PREDICTED: epoxide hydrolase 3 [Bos taurus]. 50 3e-06
Alignment gi|NP_001068664.1| monoacylglycerol lipase ABHD6 [Bos taurus]. 49 7e-06
>ref|XP_610497.4| PREDICTED: serine hydrolase-like 2 [Bos taurus].
Length = 309
Score = 500 bits (1288), Expect = e-142
Identities = 239/309 (77%), Positives = 273/309 (88%), Gaps = 1/309 (0%)
Frame = +3
Query: 42 MGLMSELKLAVPWGHIAAKIWGPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDF 221
MGL+SELKLAVPWGHIAAK WG Q +PVLCLHGWLDNANSFDRLIPLLPKDF+YVAMDF
Sbjct: 1 MGLISELKLAVPWGHIAAKAWGSHQAAPVLCLHGWLDNANSFDRLIPLLPKDFNYVAMDF 60
Query: 222 GGHGLSSHYSPGFPYYHQNFVTEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVD 401
GGHGLSSHYSPGFPY++QNFV+EVRRV AALKWNRFSLLGHSFGG VGGMFSCIFPEMVD
Sbjct: 61 GGHGLSSHYSPGFPYHYQNFVSEVRRVAAALKWNRFSLLGHSFGGAVGGMFSCIFPEMVD 120
Query: 402 KLILLDSSPFVLDTNEVESMLSYKRRAIEHTLQLEASNKPSKVVSPQEMLQGLLKNNSHV 581
KLILL+S PFVLDTNE++++L+YKRRAIEH LQ+EAS KP +VVSP+EMLQ LLK NSH
Sbjct: 121 KLILLESLPFVLDTNEMDNLLTYKRRAIEHVLQVEASRKPEQVVSPEEMLQRLLKKNSHA 180
Query: 582 GEECGALLLQRGTTPVAAGLVMNRDRRISWPEQSFEFISRELFVHAIKQLQARVLLIKAA 761
GEECG LLQRGTT VA G+ +NRDRRI+W E +F+SRELF+H IK LQARVLL+KA
Sbjct: 181 GEECGKHLLQRGTTQVATGVWLNRDRRITWAEHCLDFVSRELFMHYIKNLQARVLLVKAT 240
Query: 762 QGFYNVRRENDADKEPMQFVTSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFLQ 941
+G+Y +RRE+DADKE + FV S+L+S+L+ERFQY EVPGNHY+H+NQPQ VA VISSFLQ
Sbjct: 241 EGYYALRREDDADKETVMFVVSSLKSVLKERFQYFEVPGNHYIHMNQPQQVARVISSFLQ 300
Query: 942 SK-AIPAQL 965
+K PA L
Sbjct: 301 NKEGTPASL 309
>ref|XP_002688016.1| PREDICTED: serine hydrolase-like 2 [Bos taurus].
Length = 325
Score = 439 bits (1128), Expect = e-123
Identities = 215/308 (69%), Positives = 248/308 (80%), Gaps = 1/308 (0%)
Frame = +3
Query: 45 GLMSELKLAVPWGHIAAKIWGPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFG 224
GL+SELKLAVPWGHIAAK WG Q +PVLCLHGWLDNANSFDRLIPLLPKDF+YVAMDFG
Sbjct: 43 GLISELKLAVPWGHIAAKAWGSHQAAPVLCLHGWLDNANSFDRLIPLLPKDFNYVAMDFG 102
Query: 225 GHGLSSHYSPGFPYYHQNFVTEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDK 404
GHG
Animal-Genome cDNA 20110601C-013255
Animal-Genome cDNA 20110601C-013255
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013255
(1260 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531710.2| PREDICTED: similar to serine hydrolase-like 2 [... 454 e-128
Alignment gi|XP_547281.2| PREDICTED: similar to abhydrolase domain contai... 51 2e-06
>ref|XP_531710.2| PREDICTED: similar to serine hydrolase-like 2 [Canis familiaris].
Length = 467
Score = 454 bits (1169), Expect = e-128
Identities = 221/301 (73%), Positives = 252/301 (83%)
Frame = +3
Query: 45 GLMSELKLAVPWGHIAAKIWGPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFG 224
GL+SELKLAVPWGHIAAK WG QQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFG
Sbjct: 163 GLLSELKLAVPWGHIAAKAWGSQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFG 222
Query: 225 GHGLSSHYSPGFPYYHQNFVTEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDK 404
GHGLSSHY G PY +NFV E+ RVVAALKW RFSLL HSFGG +GGMFSCIFPEMVDK
Sbjct: 223 GHGLSSHYYLGVPYCQENFVNEIGRVVAALKWKRFSLLSHSFGGIIGGMFSCIFPEMVDK 282
Query: 405 LILLDSSPFVLDTNEVESMLSYKRRAIEHTLQLEASNKPSKVVSPQEMLQGLLKNNSHVG 584
LILLD+ PF +D +E+ML+Y+R AIEH LQ EA KP +VV P+EMLQ LKNN+H+
Sbjct: 283 LILLDTLPFTMDPKGMENMLTYRRGAIEHMLQAEAFQKPRQVVKPEEMLQRFLKNNNHLN 342
Query: 585 EECGALLLQRGTTPVAAGLVMNRDRRISWPEQSFEFISRELFVHAIKQLQARVLLIKAAQ 764
EECG LLLQRGTT VA GL+MNRDRR+ E S F++REL VH+IKQLQA+VLLIKA+Q
Sbjct: 343 EECGRLLLQRGTTQVATGLMMNRDRRVGLLEYSIPFLTRELLVHSIKQLQAQVLLIKASQ 402
Query: 765 GFYNVRRENDADKEPMQFVTSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFLQS 944
G++N+ R DK M V TLRS+L+E+FQY+EVPGNHYVHLNQPQ+VA +IS+FLQS
Sbjct: 403 GYFNMER-GITDKSVMLLVLDTLRSVLKEQFQYMEVPGNHYVHLNQPQNVADIISAFLQS 461
Query: 945 K 947
K
Sbjct: 462 K 462
>ref|XP_547281.2| PREDICTED: similar to abhydrolase domain containing 7 [Canis
familiaris].
Length = 327
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/109 (25%), Positives = 62/109 (56%), Gaps = 6/109 (5%)
Frame = +3
Query: 111 QQGSPV-LCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNF-- 281
++G P+ L LHG+ + S+ + ++ VA+D G+G + P + +N+
Sbjct: 55 ERGKPLMLLLHGFPEFWYSWRHQLREFKSEYRVVALDLRGYGETDA-----PIHRENYKL 109
Query: 282 ---VTEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDKLILLD 419
+T+++ ++ +L +++ L+GH +GG + + + +PEMV KLI+++
Sbjct: 110 DCLITDIKDILDSLGYSKCVLIGHDWGGMIAWLIAICYPEMVMKLIVIN 158
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,843,339
Number of extensions: 1517009
Number of successful extensions: 5142
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5136
Number of HSP's successfully gapped: 2
Length of query: 420
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 315
Effective length of database: 15,374,224
Effective search space: 4842880560
Effective search space used: 4842880560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
LSSHYSPGFPY++QNFV+EVRRV AALKWNRFSLLGHSFGG VGGM
Sbjct: 103 GHGLSSHYSPGFPYHYQNFVSEVRRVAAALKWNRFSLLGHSFGGAVGGM----------- 151
Query: 405 LILLDSSPFVLDTNEVESMLSYKRRAIEHTLQLEASNKPSKVVSPQEMLQGLLKNNSHVG 584
E++++L+YKRRAIEH LQ+EAS KP +VVSP+EMLQ LLK NSH G
Sbjct: 152 --------------EMDNLLTYKRRAIEHVLQVEASRKPEQVVSPEEMLQRLLKKNSHAG 197
Query: 585 EECGALLLQRGTTPVAAGLVMNRDRRISWPEQSFEFISRELFVHAIKQLQARVLLIKAAQ 764
EECG LLQRGTT VA G+ +NRDRRI+W E +F+SRELF+H IK LQARVLL+KA +
Sbjct: 198 EECGKHLLQRGTTQVATGVWLNRDRRITWAEHCLDFVSRELFMHYIKNLQARVLLVKATE 257
Query: 765 GFYNVRRENDADKEPMQFVTSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFLQS 944
G+Y +RRE+DADKE + FV S+L+S+L+ERFQY EVPGNHY+H+NQPQ VA VISSFLQ+
Sbjct: 258 GYYALRREDDADKETVMFVVSSLKSVLKERFQYFEVPGNHYIHMNQPQQVARVISSFLQN 317
Query: 945 K-AIPAQL 965
K PA L
Sbjct: 318 KEGTPASL 325
>ref|NP_001069323.2| abhydrolase domain containing 7 [Bos taurus].
Length = 362
Score = 52.8 bits (125), Expect = 7e-07
Identities = 29/109 (26%), Positives = 62/109 (56%), Gaps = 6/109 (5%)
Frame = +3
Query: 111 QQGSPV-LCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNF-- 281
++G P+ L LHG+ + S+ + ++ VA+D G+G S P + +N+
Sbjct: 90 ERGKPLMLLLHGFPEFWYSWRHQLREFKSEYRVVALDLRGYGESDA-----PVHRENYKL 144
Query: 282 ---VTEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDKLILLD 419
+T+++ ++ +L +++ L+GH +GG + + + +PEMV KLI+++
Sbjct: 145 DCLITDIKDILESLGYSKCVLIGHDWGGMIAWLIAICYPEMVMKLIVIN 193
>ref|NP_001180105.1| epoxide hydrolase 3 [Bos taurus].
Length = 360
Score = 50.4 bits (119), Expect = 3e-06
Identities = 33/137 (24%), Positives = 65/137 (47%)
Frame = +3
Query: 105 GPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFV 284
G +G +L LHG+ +N S+ + FH VA+D G+G S Y +
Sbjct: 93 GRGKGPLMLFLHGFPENWFSWRYQLREFQSRFHVVAVDLRGYGPSDAPKDVDCYTIDLLM 152
Query: 285 TEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDKLILLDSSPFVLDTNEVESML 464
+++ V+ L +++ L+ H +G + FS +P +V++++++ ++P M
Sbjct: 153 ADIQDVILGLGYSKCILVAHDWGALLAWNFSIYYPSLVERMVVVSAAP----------MS 202
Query: 465 SYKRRAIEHTLQLEASN 515
Y+ ++ H Q SN
Sbjct: 203 VYQDYSLHHIGQFFRSN 219
>ref|XP_002688608.1| PREDICTED: epoxide hydrolase 3 [Bos taurus].
Length = 360
Score = 50.4 bits (119), Expect = 3e-06
Identities = 33/137 (24%), Positives = 65/137 (47%)
Frame = +3
Query: 105 GPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFV 284
G +G +L LHG+ +N S+ + FH VA+D G+G S Y +
Sbjct: 93 GRGKGPLMLFLHGFPENWFSWRYQLREFQSRFHVVAVDLRGYGPSDAPKDVDCYTIDLLM 152
Query: 285 TEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDKLILLDSSPFVLDTNEVESML 464
+++ V+ L +++ L+ H +G + FS +P +V++++++ ++P M
Sbjct: 153 ADIQDVILGLGYSKCILVAHDWGALLAWNFSIYYPSLVERMVVVSAAP----------MS 202
Query: 465 SYKRRAIEHTLQLEASN 515
Y+ ++ H Q SN
Sbjct: 203 VYQDYSLHHIGQFFRSN 219
>ref|NP_001068664.1| monoacylglycerol lipase ABHD6 [Bos taurus].
Length = 337
Score = 49.3 bits (116), Expect = 7e-06
Identities = 70/298 (23%), Positives = 125/298 (41%), Gaps = 19/298 (6%)
Frame = +3
Query: 108 PQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFVT 287
P +L LHG+ + + + ++ LPK+ H V +D GH ++ S V
Sbjct: 68 PGHKPSILMLHGFSAHKDMWLSMVKFLPKNLHLVCVDMPGHEGTTRSSLD-DLSIDGQVK 126
Query: 288 EVRRVVAALKWNR--FSLLGHSFGGTVGGMFSCIFPEMVDKLILLDSSPFVLDTNEVESM 461
+ + V LK N+ F L+G S GG V G+++ +P V L L+ + T+
Sbjct: 127 RIHQFVECLKLNKKPFHLVGTSMGGHVAGVYAAHYPSDVCSLSLVCPAGLQYSTD----- 181
Query: 462 LSYKRRAIEHTLQLEASNKPSKV----VSPQEMLQGLLKNNSHVGEECGALLLQRGTTPV 629
+ ++ +L+ S K+ +P+EM + +L+ S+V + +LQ
Sbjct: 182 ----NKFVQRLKELQESAAVEKIPLIPTTPKEMSE-MLQLCSYVRFKVPQQILQ------ 230
Query: 630 AAGLVMNRDRRISWPEQSFEFISRELFVHAIKQLQARVLLIKAAQGFYNVRRENDADKEP 809
GLV D RI P +F R+LF+ + + + Y++ + D K P
Sbjct: 231 --GLV---DVRI--PHNTF---YRKLFLEIVSE-----------KSRYSLHQNMDKIKVP 269
Query: 810 MQFV-------------TSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFLQS 944
Q + +SI + + +E G H V + +P+ A ++ FL S
Sbjct: 270 TQIIWGKQDQVLDVSGADMLAKSIANSQVELLENCG-HSVVMERPRKTAKLLVDFLAS 326
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,554,364
Number of extensions: 1467472
Number of successful extensions: 5255
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5249
Number of HSP's successfully gapped: 6
Length of query: 420
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,207,134
Effective search space: 4475247210
Effective search space used: 4475247210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013255
(1260 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361630.1| PREDICTED: serine hydrolase-like protein 2-l... 189 2e-48
Alignment gi|XP_003362152.1| PREDICTED: serine hydrolase-like protein-lik... 126 3e-29
Alignment gi|XP_003361985.1| PREDICTED: serine hydrolase-like protein-lik... 106 3e-23
Alignment gi|XP_003354164.1| PREDICTED: epoxide hydrolase 3-like [Sus scr... 54 2e-07
Alignment gi|XP_003132321.1| PREDICTED: monoacylglycerol lipase ABHD6 [Su... 50 3e-06
>ref|XP_003361630.1| PREDICTED: serine hydrolase-like protein 2-like, partial [Sus
scrofa].
Length = 86
Score = 189 bits (481), Expect = 2e-48
Identities = 86/86 (100%), Positives = 86/86 (100%)
Frame = +3
Query: 51 MSELKLAVPWGHIAAKIWGPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGH 230
MSELKLAVPWGHIAAKIWGPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGH
Sbjct: 1 MSELKLAVPWGHIAAKIWGPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGH 60
Query: 231 GLSSHYSPGFPYYHQNFVTEVRRVVA 308
GLSSHYSPGFPYYHQNFVTEVRRVVA
Sbjct: 61 GLSSHYSPGFPYYHQNFVTEVRRVVA 86
>ref|XP_003362152.1| PREDICTED: serine hydrolase-like protein-like, partial [Sus
scrofa].
Length = 67
Score = 126 bits (316), Expect = 3e-29
Identities = 63/67 (94%), Positives = 65/67 (97%)
Frame = +3
Query: 435 LDTNEVESMLSYKRRAIEHTLQLEASNKPSKVVSPQEMLQGLLKNNSHVGEECGALLLQR 614
++ EVESMLSYKRRAIEHTLQLEASNKPSKVVSPQEMLQGLLKNNSHVGEECGALLLQR
Sbjct: 1 MNPQEVESMLSYKRRAIEHTLQLEASNKPSKVVSPQEMLQGLLKNNSHVGEECGALLLQR 60
Query: 615 GTTPVAA 635
GTTPVAA
Sbjct: 61 GTTPVAA 67
>ref|XP_003361985.1| PREDICTED: serine hydrolase-like protein-like [Sus scrofa].
Length = 52
Score = 106 bits (264), Expect = 3e-23
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = +3
Query: 810 MQFVTSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFLQSKAIPAQL 965
MQFVTSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFLQSKAIPAQL
Sbjct: 1 MQFVTSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFLQSKAIPAQL 52
>ref|XP_003354164.1| PREDICTED: epoxide hydrolase 3-like [Sus scrofa].
Length = 360
Score = 53.5 bits (127), Expect = 2e-07
Identities = 35/137 (25%), Positives = 65/137 (47%)
Frame = +3
Query: 105 GPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFV 284
G G +L LHG+ +N S+ I FH VA+D G+G S S Y +
Sbjct: 93 GRGNGPLMLFLHGFPENWFSWRYQIREFQSHFHVVAVDLRGYGSSDAPSDMDCYTIDLLM 152
Query: 285 TEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDKLILLDSSPFVLDTNEVESML 464
+++ V+ L +++ L+ H +G + FS +P +V++++++ ++P M
Sbjct: 153 ADIQDVILGLGYSKCILVAHDWGALLAWNFSIYYPSLVERMVVVSAAP----------MS 202
Query: 465 SYKRRAIEHTLQLEASN 515
Y+ ++ H Q SN
Sbjct: 203 VYQDYSMRHISQFFRSN 219
>ref|XP_003132321.1| PREDICTED: monoacylglycerol lipase ABHD6 [Sus scrofa].
Length = 337
Score = 50.1 bits (118), Expect = 3e-06
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 15/167 (8%)
Frame = +3
Query: 108 PQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFVT 287
P +L LHG+ + + + ++ LPK+ H + +D GH ++ S V
Sbjct: 68 PGHKPSILMLHGFSAHKDMWLSVVKFLPKNLHLICVDMPGHEGTTRSSLD-DLSIDGQVK 126
Query: 288 EVRRVVAALKWNR--FSLLGHSFGGTVGGMFSCIFPEMVDKLILL--------DSSPFVL 437
+ + V LK NR F L+G S GG V G+++ +P + L L+ + FV
Sbjct: 127 RIHQFVECLKLNRKPFHLIGTSMGGHVAGVYAAYYPSDLCSLSLVCPAGLQYSTDNHFVK 186
Query: 438 DTNEVESMLSYKRRAIEHTLQLEASN-----KPSKVVSPQEMLQGLL 563
E++ + ++ + + E S +++ PQ++LQGL+
Sbjct: 187 QLKELQESAAIEKIPLIPSTPEEMSEMLQLCSYARIKVPQQILQGLV 233
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,275,859
Number of extensions: 946473
Number of successful extensions: 3340
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3338
Number of HSP's successfully gapped: 5
Length of query: 420
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 318
Effective length of database: 8,804,438
Effective search space: 2799811284
Effective search space used: 2799811284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013255
(1260 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075964.1| serine hydrolase-like protein [Mus musculus]. 476 e-134
Alignment gi|NP_079617.2| monoacylglycerol lipase ABHD6 [Mus musculus]. 53 4e-07
Alignment gi|NP_001001804.2| epoxide hydrolase 4 [Mus musculus]. 51 2e-06
>ref|NP_075964.1| serine hydrolase-like protein [Mus musculus].
Length = 311
Score = 476 bits (1224), Expect = e-134
Identities = 222/301 (73%), Positives = 262/301 (87%), Gaps = 1/301 (0%)
Frame = +3
Query: 42 MGLMSELKLAVPWGHIAAKIWGPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDF 221
MGL SELKLAVPWGHIA K+WG Q+ PVLCLHGWLDNANSFDRLIPLLP+DF Y+AMDF
Sbjct: 1 MGLHSELKLAVPWGHIALKVWGSQKNPPVLCLHGWLDNANSFDRLIPLLPQDFCYMAMDF 60
Query: 222 GGHGLSSHYSPGFPYYHQNFVTEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVD 401
GGHGLSSHY+PG PYY QNFV+EVRRV A KWN+F+LLGHSFGG VGG F+C+FPEMVD
Sbjct: 61 GGHGLSSHYNPGLPYYQQNFVSEVRRVATAFKWNQFTLLGHSFGGCVGGTFACMFPEMVD 120
Query: 402 KLILLDSSPFVLDTNEVESMLSYKRRAIEHTLQLEASNKPS-KVVSPQEMLQGLLKNNSH 578
KLILLDS+PF LD+NE+E++L+Y+RR IEHTLQ+EAS K S + VSP+EMLQG L NNSH
Sbjct: 121 KLILLDSTPFFLDSNEMENILTYRRRNIEHTLQVEASQKKSLRAVSPEEMLQGFLNNNSH 180
Query: 579 VGEECGALLLQRGTTPVAAGLVMNRDRRISWPEQSFEFISRELFVHAIKQLQARVLLIKA 758
+ ++CG L+LQRGTT V AGLV+NRDRRISWPE SF+F+S+E+FVH+ K LQA VL+IKA
Sbjct: 181 LDKDCGELILQRGTTKVDAGLVLNRDRRISWPENSFDFVSKEMFVHSAKSLQASVLMIKA 240
Query: 759 AQGFYNVRRENDADKEPMQFVTSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFL 938
QG+Y+VRR NDADK PM F+ TLRS L+ERFQ+VEVPGNHY+H+N+PQ VAGV+ FL
Sbjct: 241 LQGYYDVRRANDADKAPMHFMVDTLRSTLKERFQFVEVPGNHYIHMNKPQVVAGVVGPFL 300
Query: 939 Q 941
Q
Sbjct: 301 Q 301
>ref|NP_079617.2| monoacylglycerol lipase ABHD6 [Mus musculus].
Length = 336
Score = 53.1 bits (126), Expect = 4e-07
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Frame = +3
Query: 108 PQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFVT 287
P +L LHG+ + + + ++ LPK+ H V +D GH ++ S + V
Sbjct: 68 PGHKPSILMLHGFSAHKDMWLSVVKFLPKNLHLVCVDMPGHEGTTRSS----LDDLSIVG 123
Query: 288 EVRRV---VAALKWNR--FSLLGHSFGGTVGGMFSCIFPEMVDKLILL--------DSSP 428
+V+R+ V LK N+ F L+G S GG V G+++ +P V L L+ +P
Sbjct: 124 QVKRIHQFVECLKLNKKPFHLIGTSMGGHVAGVYAAYYPSDVCSLSLVCPAGLQYSTDNP 183
Query: 429 FVLDTNEVESMLSYKRRAIEHTLQLEASNKPS-----KVVSPQEMLQGLL 563
FV E+E + ++ + + E S + PQ++LQGL+
Sbjct: 184 FVQRLKELEESAAIQKIPLIPSTPEEMSEMLQLCSYVRFKVPQQILQGLV 233
>ref|NP_001001804.2| epoxide hydrolase 4 [Mus musculus].
Length = 359
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/104 (25%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = +3
Query: 111 QQGSPV-LCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFVT 287
++G P+ L LHG+ + S+ + ++ VA+D G+G S + Y +
Sbjct: 88 ERGKPLMLLLHGFPEFWYSWRHQLREFKSEYRVVALDLRGYGESDAPAHQESYKLDCLIA 147
Query: 288 EVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDKLILLD 419
+++ ++ +L +++ L+GH +GG + + + +PEM+ KLI+++
Sbjct: 148 DIKDILDSLGYSKCVLIGHDWGGMIAWLIAVCYPEMIMKLIVIN 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,407,595
Number of extensions: 1225721
Number of successful extensions: 4064
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4060
Number of HSP's successfully gapped: 3
Length of query: 420
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 316
Effective length of database: 12,493,815
Effective search space: 3948045540
Effective search space used: 3948045540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013255
(1260 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055324.2| serine hydrolase-like protein 2 [Homo sapiens]. 450 e-126
Alignment gi|NP_775838.3| epoxide hydrolase 4 [Homo sapiens]. 52 2e-06
Alignment gi|NP_065727.4| monoacylglycerol lipase ABHD6 [Homo sapiens]. 50 3e-06
Alignment gi|NP_001136358.1| epoxide hydrolase 3 precursor [Homo sapiens]. 49 8e-06
Alignment gi|NP_079070.1| epoxide hydrolase 3 precursor [Homo sapiens]. 49 8e-06
>ref|NP_055324.2| serine hydrolase-like protein 2 [Homo sapiens].
Length = 314
Score = 450 bits (1158), Expect = e-126
Identities = 216/310 (69%), Positives = 266/310 (85%), Gaps = 1/310 (0%)
Frame = +3
Query: 39 AMGLMSELKLAVPWGHIAAKIWGPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMD 218
A GL+SELKLAVPWGHIAAK WG QG PVLCLHGWLDNA+SFDRLIPLLP+DF+YVAMD
Sbjct: 6 APGLISELKLAVPWGHIAAKAWGSLQGPPVLCLHGWLDNASSFDRLIPLLPQDFYYVAMD 65
Query: 219 FGGHGLSSHYSPGFPYYHQNFVTEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMV 398
FGGHGLSSHYSPG PYY Q FV+E+RRVVAALKWNRFS+LGHSFGG VGGMF C FPEMV
Sbjct: 66 FGGHGLSSHYSPGVPYYLQTFVSEIRRVVAALKWNRFSILGHSFGGVVGGMFFCTFPEMV 125
Query: 399 DKLILLDSSPFVLDTNEVESMLSYKRRAIEHTLQLEASNKPSKVVSPQEMLQGLLKNNSH 578
DKLILLD+ F+L+++E+E++L+YKRRAIEH LQ+EAS +PS V S +++LQ LLK+NSH
Sbjct: 126 DKLILLDTPLFLLESDEMENLLTYKRRAIEHVLQVEASQEPSHVFSLKQLLQRLLKSNSH 185
Query: 579 VGEECGALLLQRGTTPVAAGLVMNRDRRISWPEQSFEFISRELFVHAIKQLQARVLLIKA 758
+ EECG LLLQRGTT VA GLV+NRD+R++W E S +FISREL H+I++LQA VLLIKA
Sbjct: 186 LSEECGELLLQRGTTKVATGLVLNRDQRLAWAENSIDFISRELCAHSIRKLQAHVLLIKA 245
Query: 759 AQGFYNVRRENDADKEPMQFVTSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFL 938
G+++ R+N ++KE + F+ T++S L+E+FQ+VEVPGNH VH+++PQHVA +ISSFL
Sbjct: 246 VHGYFD-SRQNYSEKESLSFMIDTMKSTLKEQFQFVEVPGNHCVHMSEPQHVASIISSFL 304
Query: 939 Q-SKAIPAQL 965
Q + +PAQL
Sbjct: 305 QCTHMLPAQL 314
>ref|NP_775838.3| epoxide hydrolase 4 [Homo sapiens].
Length = 362
Score = 51.6 bits (122), Expect = 2e-06
Identities = 29/109 (26%), Positives = 62/109 (56%), Gaps = 6/109 (5%)
Frame = +3
Query: 111 QQGSPV-LCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNF-- 281
++G P+ L LHG+ + S+ + ++ VA+D G+G + P + QN+
Sbjct: 90 ERGKPLMLLLHGFPEFWYSWRYQLREFKSEYRVVALDLRGYGETDA-----PIHRQNYKL 144
Query: 282 ---VTEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDKLILLD 419
+T+++ ++ +L +++ L+GH +GG + + + +PEMV KLI+++
Sbjct: 145 DCLITDIKDILDSLGYSKCVLIGHDWGGMIAWLIAICYPEMVMKLIVIN 193
>ref|NP_065727.4| monoacylglycerol lipase ABHD6 [Homo sapiens].
Length = 337
Score = 50.4 bits (119), Expect = 3e-06
Identities = 71/298 (23%), Positives = 125/298 (41%), Gaps = 19/298 (6%)
Frame = +3
Query: 108 PQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFVT 287
P +L LHG+ + + + ++ LPK+ H V +D GH ++ S V
Sbjct: 68 PGHKPSILMLHGFSAHKDMWLSVVKFLPKNLHLVCVDMPGHEGTTRSSLD-DLSIDGQVK 126
Query: 288 EVRRVVAALKWNR--FSLLGHSFGGTVGGMFSCIFPEMVDKLILLDSSPFVLDTNEVESM 461
+ + V LK N+ F L+G S GG V G+++ +P V L L+ + T+
Sbjct: 127 RIHQFVECLKLNKKPFHLVGTSMGGQVAGVYAAYYPSDVSSLCLVCPAGLQYSTD----- 181
Query: 462 LSYKRRAIEHTLQLEASNKPSKV----VSPQEMLQGLLKNNSHVGEECGALLLQRGTTPV 629
+ ++ +L+ S K+ +P+EM + +L+ S+V + +LQ
Sbjct: 182 ----NQFVQRLKELQGSAAVEKIPLIPSTPEEMSE-MLQLCSYVRFKVPQQILQ------ 230
Query: 630 AAGLVMNRDRRISWPEQSFEFISRELFVHAIKQLQARVLLIKAAQGFYNVRRENDADKEP 809
GLV D RI P +F R+LF+ + + + Y++ + D K P
Sbjct: 231 --GLV---DVRI--PHNNF---YRKLFLEIVSE-----------KSRYSLHQNMDKIKVP 269
Query: 810 MQFV-------------TSTLRSILQERFQYVEVPGNHYVHLNQPQHVAGVISSFLQS 944
Q + +SI + + +E G H V + +P+ A +I FL S
Sbjct: 270 TQIIWGKQDQVLDVSGADMLAKSIANCQVELLENCG-HSVVMERPRKTAKLIIDFLAS 326
>ref|NP_001136358.1| epoxide hydrolase 3 precursor [Homo sapiens].
Length = 360
Score = 49.3 bits (116), Expect = 8e-06
Identities = 27/108 (25%), Positives = 54/108 (50%)
Frame = +3
Query: 105 GPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFV 284
G G +L LHG+ +N S+ + FH VA+D G+G S Y +
Sbjct: 93 GRGNGPLMLFLHGFPENWFSWRYQLREFQSRFHVVAVDLRGYGPSDAPRDVDCYTIDLLL 152
Query: 285 TEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDKLILLDSSP 428
+++ V+ L +++ L+ H +G + FS +P +V++++++ +P
Sbjct: 153 VDIKDVILGLGYSKCILVAHDWGALLAWHFSIYYPSLVERMVVVSGAP 200
>ref|NP_079070.1| epoxide hydrolase 3 precursor [Homo sapiens].
Length = 360
Score = 49.3 bits (116), Expect = 8e-06
Identities = 27/108 (25%), Positives = 54/108 (50%)
Frame = +3
Query: 105 GPQQGSPVLCLHGWLDNANSFDRLIPLLPKDFHYVAMDFGGHGLSSHYSPGFPYYHQNFV 284
G G +L LHG+ +N S+ + FH VA+D G+G S Y +
Sbjct: 93 GRGNGPLMLFLHGFPENWFSWRYQLREFQSRFHVVAVDLRGYGPSDAPRDVDCYTIDLLL 152
Query: 285 TEVRRVVAALKWNRFSLLGHSFGGTVGGMFSCIFPEMVDKLILLDSSP 428
+++ V+ L +++ L+ H +G + FS +P +V++++++ +P
Sbjct: 153 VDIKDVILGLGYSKCILVAHDWGALLAWHFSIYYPSLVERMVVVSGAP 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,683,016
Number of extensions: 1474875
Number of successful extensions: 5094
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5083
Number of HSP's successfully gapped: 5
Length of query: 420
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,835,944
Effective search space: 4673322360
Effective search space used: 4673322360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013255
(1260 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896147.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 490 e-135
gb|GL894856.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 299 2e-78
gb|GL896353.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 220 1e-54
gb|GL894945.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 167 2e-38
gb|GL895178.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 153 3e-34
Sscrofa_Chr14 131 1e-27
>gb|GL896147.1| Sus scrofa unplaced genomic scaffold chrU_scaffold516
Length = 4842
Score = 490 bits (247), Expect = e-135
Identities = 358/395 (90%), Gaps = 4/395 (1%)
Strand = Plus / Minus
Query: 850 agcggttccagtacgtggaagtcccaggtaatcactacgtgcatctgaaccagccccagc 909
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3752 agcggttccagtacgtggaagtcccaggcaatcactacgtgcatctgaaccagccccagc 3693
Query: 910 acgtggccggcgtcatcagctcctttttacagagcaaggcgatccccgcccagctgtaac 969
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3692 acgtggccggtgtcatcagctcctttttacagagcaaggcgatccccgcccagctgtagc 3633
Query: 970 cacggcctgcggctgaagacctgccgcttggcaccggactcccagctggcaagcccaagc 1029
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3632 catggcctgcggctgaagacctgccgcttggcaccggactcccagctggcaagcccaggc 3573
Query: 1030 caggcgtggtcagcggaggatcctgccgcatttgannnnnnnnnnnnnnnntaaagggaa 1089
|||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct: 3572 caggcgtggtcagcggaggatcctgcagcagttgagggggcgggggtggggtaaagggaa 3513
Query: 1090 caggacaagattctgaccttaacatctgaactccagacagtgtctggatcggggggattt 1149
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||
Sbjct: 3512 caggacaagattctgaccttaacatctgacctcaagacagtgtctggatcgggggca-tt 3454
Query: 1150 atctgttctgtgaatgggtgggggtgggtcaaaacccaccactttttgtacccttttctt 1209
|||||||| |||| |||||||||| ||||| | |||||||| ||||||| |||||||||
Sbjct: 3453 atctgttcagtgagtgggtggggg-gggtc-agacccaccaacttttgtagccttttctt 3396
Query: 1210 ggtgcccaacttgatg-aaaatacaatgttccctt 1243
||||||||||| |||| ||||||||||||||||||
Sbjct: 3395 ggtgcccaactggatgaaaaatacaatgttccctt 3361
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 755 agcagcgcaaggattttataacgtgaggagggagaacgacgctgacaaggagcccatgca 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4760 agcagcgcaaggattttataacgtgaggagggagaacgacgctgacaaggagcccatgca 4701
Query: 815 gttcgtgaccagcacactgagatctattctccaagag 851
|||||||||||||||||||||||||||||||||||||
Sbjct: 4700 gttcgtgaccagcacactgagatctattctccaagag 4664
>gb|GL894856.1| Sus scrofa unplaced genomic scaffold chrU_scaffold348
Length = 687
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 45 ggtctcatgtcagagctgaagctcgctgtgccctggggccacattgccgccaaaatctgg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggtctcatgtcagagctgaagctcgctgtgccctggggccacattgccgccaaaatctgg 344
Query: 105 ggcccccagcagggctccccagttctctgccttcacggctggctggacaatgctaactcc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggcccccagcagggctccccagttctctgccttcacggctggctggacaatgctaactcc 284
Query: 165 ttcgacaggctcatccctcttctcccgaaag 195
|||||||||||||||||||||||||||||||
Sbjct: 283 ttcgacaggctcatccctcttctcccgaaag 253
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 194 agactttcactacgtggccatggattttgggggtcatgggctctcgtcccattatagccc 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 agactttcactacgtggccatggattttgggggtcatgggctctcgtcccattatagccc 85
Query: 254 aggtttcccgtattaccaccaaaactttgtgactgaggtccgaagggtcgtggcag 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 aggtttcccgtattaccaccaaaactttgtgactgaggtccgaagggtcgtggcag 29
>gb|GL896353.1| Sus scrofa unplaced genomic scaffold chrU_scaffold701
Length = 2072
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 447 gaagtagagagcatgctgagctacaagcggagagccatagaacacacgctgcagctggag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1910 gaagtagagagcatgctgagctacaagcggagagccatagaacacacgctgcagctggag 1851
Query: 507 gcctccaacaagccgtcgaaagtggtcagcccgcaggagatgctgcagggg 557
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1850 gcctccaacaagccgtcgaaagtggtcagcccgcaggagatgctgcagggg 1800
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 556 ggctgctgaagaacaacagtcacgtgggagaggagtgtggggcgctcctcctgcagagag 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 ggctgctgaagaacaacagtcacgtgggagaggagtgtggggcgctcctcctgcagagag 1364
Query: 616 gaaccacgccggtggccgcagg 637
||||||||||||||||||||||
Sbjct: 1363 gaaccacgccggtggccgcagg 1342
>gb|GL894945.1| Sus scrofa unplaced genomic scaffold chrU_scaffold356
Length = 733
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 671 gccggagcagagcttcgagttcatcagcagggagctgtttgtacacgccatcaagcagct 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gccggagcagagcttcgagttcatcagcagggagctgtttgtacacgccatcaagcagct 348
Query: 731 gcaggcccgcgtcctgctcatcaa 754
||||||||||||||||||||||||
Sbjct: 349 gcaggcccgcgtcctgctcatcaa 372
>gb|GL895178.1| Sus scrofa unplaced genomic scaffold chrU_scaffold377
Length = 830
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 371 gttttcctgtatcttccccgagatggtggataaacttatcttgctggactcctcaccatt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gttttcctgtatcttccccgagatggtggataaacttatcttgctggactcctcaccatt 172
Query: 431 tgtcctggacactaatg 447
|||||||||||||||||
Sbjct: 173 tgtcctggacactaatg 189
>Sscrofa_Chr14
|| Length = 153851969
Score = 131 bits (66), Expect = 1e-27
Identities = 138/162 (85%)
Strand = Plus / Minus
Query: 855 ttccagtacgtggaagtcccaggtaatcactacgtgcatctgaaccagccccagcacgtg 914
||||||| |||| ||||||||||||||||||| | || || ||||| || |||| ||||
Sbjct: 77004367 ttccagtgtgtggcagtcccaggtaatcactacatccaccttaaccaaccacagcgcgtg 77004308
Query: 915 gccggcgtcatcagctcctttttacagagcaaggcgatccccgcccagctgtaaccacgg 974
| || | ||||||||||||||||| |||||||| |||||||||||||||||| ||||||
Sbjct: 77004307 actggaggcatcagctcctttttacggagcaaggagatccccgcccagctgtagccacgg 77004248
Query: 975 cctgcggctgaagacctgccgcttggcaccggactcccagct 1016
|||| |||| ||||||||| ||| ||||| |||| ||||||
Sbjct: 77004247 cctggggctaaagacctgctgctcagcaccagacttccagct 77004206
Score = 75.8 bits (38), Expect = 5e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 1081 taaagggaacaggacaagattctgaccttaacatctga 1118
||||||||||||||||||||||||||||||||||||||
Sbjct: 77004111 taaagggaacaggacaagattctgaccttaacatctga 77004074
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,486,241
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 11
Length of query: 1260
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1239
Effective length of database: 2,808,413,156
Effective search space: 3479623900284
Effective search space used: 3479623900284
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)