Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013256
(993 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533757.2| PREDICTED: similar to cereblon isoform 1 [Canis... 588 e-168
Alignment gi|XP_862944.1| PREDICTED: similar to cereblon (predicted) isof... 409 e-114
Alignment gi|XP_862897.1| PREDICTED: similar to cereblon isoform 3 [Canis... 305 4e-83
>ref|XP_533757.2| PREDICTED: similar to cereblon isoform 1 [Canis familiaris].
Length = 444
Score = 588 bits (1516), Expect = e-168
Identities = 291/323 (90%), Positives = 299/323 (92%)
Frame = +3
Query: 24 MAGEGDPQDAAHDMGNHLPLLPAXXXXXXXXXXXXXXXXSKEPKKPNIINFDTSLPTSHT 203
M GE DPQDAAH+MGNHLPLLPA SKE KKPN+INFDTSLPTSHT
Sbjct: 1 MDGERDPQDAAHNMGNHLPLLPAESEEEDEIEMEVEDQDSKEAKKPNVINFDTSLPTSHT 60
Query: 204 YLGSDMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFSPQEVSMVRNLIQKDR 383
YLG+DMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLF PQEVSMVRNLIQKDR
Sbjct: 61 YLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFRPQEVSMVRNLIQKDR 120
Query: 384 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLEIRTQSDGIQ 563
TFAVLAYSN+QEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLE+RTQSDGIQ
Sbjct: 121 TFAVLAYSNLQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQ 180
Query: 564 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQCSYKWWQKYQKRKFHCANLT 743
QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQ S KWWQKYQKRKFHCANLT
Sbjct: 181 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQYSCKWWQKYQKRKFHCANLT 240
Query: 744 SWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYRVAACLPIDDVLRIQL 923
SWPRWLYSLYDAETLMDRIKKQLREWDENLK++SLPSNPIDFSYRVAACLPIDDVLRIQL
Sbjct: 241 SWPRWLYSLYDAETLMDRIKKQLREWDENLKDESLPSNPIDFSYRVAACLPIDDVLRIQL 300
Query: 924 P*IGSAIQRLRCELDIMNQCTSL 992
IGSAIQRLRCELDIMN+CTSL
Sbjct: 301 LKIGSAIQRLRCELDIMNKCTSL 323
>ref|XP_862944.1| PREDICTED: similar to cereblon (predicted) isoform 4 [Canis
familiaris].
Length = 234
Score = 409 bits (1052), Expect = e-114
Identities = 204/231 (88%), Positives = 209/231 (90%)
Frame = +3
Query: 24 MAGEGDPQDAAHDMGNHLPLLPAXXXXXXXXXXXXXXXXSKEPKKPNIINFDTSLPTSHT 203
M GE DPQDAAH+MGNHLPLLPA SKE KKPN+INFDTSLPTSHT
Sbjct: 1 MDGERDPQDAAHNMGNHLPLLPAESEEEDEIEMEVEDQDSKEAKKPNVINFDTSLPTSHT 60
Query: 204 YLGSDMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFSPQEVSMVRNLIQKDR 383
YLG+DMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLF PQEVSMVRNLIQKDR
Sbjct: 61 YLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFRPQEVSMVRNLIQKDR 120
Query: 384 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLEIRTQSDGIQ 563
TFAVLAYSN+QEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLE+RTQSDGIQ
Sbjct: 121 TFAVLAYSNLQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQ 180
Query: 564 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQCSYKWWQKYQK 716
QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQ S KWWQKYQK
Sbjct: 181 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQYSCKWWQKYQK 231
>ref|XP_862897.1| PREDICTED: similar to cereblon isoform 3 [Canis familiaris].
Length = 178
Score = 305 bits (781), Expect = 4e-83
Identities = 153/178 (85%), Positives = 158/178 (88%)
Frame = +3
Query: 24 MAGEGDPQDAAHDMGNHLPLLPAXXXXXXXXXXXXXXXXSKEPKKPNIINFDTSLPTSHT 203
M GE DPQDAAH+MGNHLPLLPA SKE KKPN+INFDTSLPTSHT
Sbjct: 1 MDGERDPQDAAHNMGNHLPLLPAESEEEDEIEMEVEDQDSKEAKKPNVINFDTSLPTSHT 60
Query: 204 YLGSDMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFSPQEVSMVRNLIQKDR 383
YLG+DMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLF PQEVSMVRNLIQKDR
Sbjct: 61 YLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFRPQEVSMVRNLIQKDR 120
Query: 384 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLEIRTQSDG 557
TFAVLAYSN+QEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLE+RTQSDG
Sbjct: 121 TFAVLAYSNLQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDG 178
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,102,811
Number of extensions: 758945
Number of successful extensions: 1848
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1832
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-013256
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013256
(993 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068995.1| protein cereblon [Bos taurus]. 602 e-172
>ref|NP_001068995.1| protein cereblon [Bos taurus].
Length = 444
Score = 602 bits (1553), Expect = e-172
Identities = 296/323 (91%), Positives = 303/323 (93%)
Frame = +3
Query: 24 MAGEGDPQDAAHDMGNHLPLLPAXXXXXXXXXXXXXXXXSKEPKKPNIINFDTSLPTSHT 203
MAGEGDP+DAAH+MGNHLPLLPA +KEPKKPNIINFDTSLPTSHT
Sbjct: 1 MAGEGDPEDAAHNMGNHLPLLPAEEEEEDEIEMEVEDQDNKEPKKPNIINFDTSLPTSHT 60
Query: 204 YLGSDMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFSPQEVSMVRNLIQKDR 383
YLGSDMEEFHGRTLHDDDSC VIPVLPQV+M LIPGQTLPLQLFSPQEVSMVRNLIQKDR
Sbjct: 61 YLGSDMEEFHGRTLHDDDSCPVIPVLPQVVMTLIPGQTLPLQLFSPQEVSMVRNLIQKDR 120
Query: 384 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLEIRTQSDGIQ 563
TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIE+VKVKAIGRQRFKVLEIRTQSDGIQ
Sbjct: 121 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEVVKVKAIGRQRFKVLEIRTQSDGIQ 180
Query: 564 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQCSYKWWQKYQKRKFHCANLT 743
QAKVQILPECVLPSTMSAVQLESLNKC+IFPSKPVSWEDQCSYKWWQKYQKRKFHCANLT
Sbjct: 181 QAKVQILPECVLPSTMSAVQLESLNKCRIFPSKPVSWEDQCSYKWWQKYQKRKFHCANLT 240
Query: 744 SWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYRVAACLPIDDVLRIQL 923
SWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYRVAACLPIDDVLRIQL
Sbjct: 241 SWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYRVAACLPIDDVLRIQL 300
Query: 924 P*IGSAIQRLRCELDIMNQCTSL 992
IGSAIQRLRCELDIMN+CTSL
Sbjct: 301 LKIGSAIQRLRCELDIMNKCTSL 323
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,783,593
Number of extensions: 745394
Number of successful extensions: 1850
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1845
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013256
(993 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,352,947
Number of extensions: 473175
Number of successful extensions: 1231
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1231
Number of HSP's successfully gapped: 0
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013256
(993 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067424.2| protein cereblon isoform 1 [Mus musculus]. 580 e-166
Alignment gi|NP_780566.1| protein cereblon isoform 2 [Mus musculus]. 578 e-165
>ref|NP_067424.2| protein cereblon isoform 1 [Mus musculus].
Length = 444
Score = 580 bits (1496), Expect = e-166
Identities = 285/323 (88%), Positives = 297/323 (91%)
Frame = +3
Query: 24 MAGEGDPQDAAHDMGNHLPLLPAXXXXXXXXXXXXXXXXSKEPKKPNIINFDTSLPTSHT 203
MAGEGD QDAAH+MGNHLPLLP SKE +KPNIINFDTSLPTSHT
Sbjct: 1 MAGEGDQQDAAHNMGNHLPLLPDSEDEDDEIEMEVEDQDSKEARKPNIINFDTSLPTSHT 60
Query: 204 YLGSDMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFSPQEVSMVRNLIQKDR 383
YLG+DMEEFHGRTLHDDDSCQVIPVLP+V+MILIPGQTLPLQL PQEVSMVRNLIQKDR
Sbjct: 61 YLGADMEEFHGRTLHDDDSCQVIPVLPEVLMILIPGQTLPLQLSHPQEVSMVRNLIQKDR 120
Query: 384 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLEIRTQSDGIQ 563
TFAVLAYSNVQEREAQFGTTAEIYAYREEQ+FGIE+VKVKAIGRQRFKVLE+RTQSDGIQ
Sbjct: 121 TFAVLAYSNVQEREAQFGTTAEIYAYREEQEFGIEVVKVKAIGRQRFKVLELRTQSDGIQ 180
Query: 564 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQCSYKWWQKYQKRKFHCANLT 743
QAKVQILPECVLPSTMSAVQLESLNKCQ+FPSKP+SWEDQ S KWWQKYQKRKFHCANLT
Sbjct: 181 QAKVQILPECVLPSTMSAVQLESLNKCQVFPSKPISWEDQYSCKWWQKYQKRKFHCANLT 240
Query: 744 SWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYRVAACLPIDDVLRIQL 923
SWPRWLYSLYDAETLMDRIKKQLREWDENLK+DSLP NPIDFSYRVAACLPIDDVLRIQL
Sbjct: 241 SWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPENPIDFSYRVAACLPIDDVLRIQL 300
Query: 924 P*IGSAIQRLRCELDIMNQCTSL 992
IGSAIQRLRCELDIMN+CTSL
Sbjct: 301 LKIGSAIQRLRCELDIMNKCTSL 323
>ref|NP_780566.1| protein cereblon isoform 2 [Mus musculus].
Length = 445
Score = 578 bits (1490), Expect = e-165
Identities = 286/324 (88%), Positives = 298/324 (91%), Gaps = 1/324 (0%)
Frame = +3
Query: 24 MAGEGDPQDAAHDMGNHLPLLPAXXXXXXXXXXXXXXXX-SKEPKKPNIINFDTSLPTSH 200
MAGEGD QDAAH+MGNHLPLLPA SKE +KPNIINFDTSLPTSH
Sbjct: 1 MAGEGDQQDAAHNMGNHLPLLPADSEDEDDEIEMEVEDQDSKEARKPNIINFDTSLPTSH 60
Query: 201 TYLGSDMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFSPQEVSMVRNLIQKD 380
TYLG+DMEEFHGRTLHDDDSCQVIPVLP+V+MILIPGQTLPLQL PQEVSMVRNLIQKD
Sbjct: 61 TYLGADMEEFHGRTLHDDDSCQVIPVLPEVLMILIPGQTLPLQLSHPQEVSMVRNLIQKD 120
Query: 381 RTFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLEIRTQSDGI 560
RTFAVLAYSNVQEREAQFGTTAEIYAYREEQ+FGIE+VKVKAIGRQRFKVLE+RTQSDGI
Sbjct: 121 RTFAVLAYSNVQEREAQFGTTAEIYAYREEQEFGIEVVKVKAIGRQRFKVLELRTQSDGI 180
Query: 561 QQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQCSYKWWQKYQKRKFHCANL 740
QQAKVQILPECVLPSTMSAVQLESLNKCQ+FPSKP+SWEDQ S KWWQKYQKRKFHCANL
Sbjct: 181 QQAKVQILPECVLPSTMSAVQLESLNKCQVFPSKPISWEDQYSCKWWQKYQKRKFHCANL 240
Query: 741 TSWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYRVAACLPIDDVLRIQ 920
TSWPRWLYSLYDAETLMDRIKKQLREWDENLK+DSLP NPIDFSYRVAACLPIDDVLRIQ
Sbjct: 241 TSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPENPIDFSYRVAACLPIDDVLRIQ 300
Query: 921 LP*IGSAIQRLRCELDIMNQCTSL 992
L IGSAIQRLRCELDIMN+CTSL
Sbjct: 301 LLKIGSAIQRLRCELDIMNKCTSL 324
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,152,715
Number of extensions: 663177
Number of successful extensions: 1858
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1844
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013256
(993 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057386.2| protein cereblon isoform 1 [Homo sapiens]. 592 e-169
Alignment gi|NP_001166953.1| protein cereblon isoform 2 [Homo sapiens]. 590 e-169
>ref|NP_057386.2| protein cereblon isoform 1 [Homo sapiens].
Length = 442
Score = 592 bits (1525), Expect = e-169
Identities = 296/323 (91%), Positives = 301/323 (93%)
Frame = +3
Query: 24 MAGEGDPQDAAHDMGNHLPLLPAXXXXXXXXXXXXXXXXSKEPKKPNIINFDTSLPTSHT 203
MAGEGD QDAAH+MGNHLPLLPA SKE KKPNIINFDTSLPTSHT
Sbjct: 1 MAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQD--SKEAKKPNIINFDTSLPTSHT 58
Query: 204 YLGSDMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFSPQEVSMVRNLIQKDR 383
YLG+DMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLF PQEVSMVRNLIQKDR
Sbjct: 59 YLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDR 118
Query: 384 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLEIRTQSDGIQ 563
TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLE+RTQSDGIQ
Sbjct: 119 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQ 178
Query: 564 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQCSYKWWQKYQKRKFHCANLT 743
QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVS EDQCSYKWWQKYQKRKFHCANLT
Sbjct: 179 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLT 238
Query: 744 SWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYRVAACLPIDDVLRIQL 923
SWPRWLYSLYDAETLMDRIKKQLREWDENLK+DSLPSNPIDFSYRVAACLPIDDVLRIQL
Sbjct: 239 SWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQL 298
Query: 924 P*IGSAIQRLRCELDIMNQCTSL 992
IGSAIQRLRCELDIMN+CTSL
Sbjct: 299 LKIGSAIQRLRCELDIMNKCTSL 321
>ref|NP_001166953.1| protein cereblon isoform 2 [Homo sapiens].
Length = 441
Score = 590 bits (1520), Expect = e-169
Identities = 295/323 (91%), Positives = 300/323 (92%)
Frame = +3
Query: 24 MAGEGDPQDAAHDMGNHLPLLPAXXXXXXXXXXXXXXXXSKEPKKPNIINFDTSLPTSHT 203
MAGEGD QDAAH+MGNHLPLLP SKE KKPNIINFDTSLPTSHT
Sbjct: 1 MAGEGDQQDAAHNMGNHLPLLPESEEEDEMEVEDQD---SKEAKKPNIINFDTSLPTSHT 57
Query: 204 YLGSDMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFSPQEVSMVRNLIQKDR 383
YLG+DMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLF PQEVSMVRNLIQKDR
Sbjct: 58 YLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDR 117
Query: 384 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLEIRTQSDGIQ 563
TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLE+RTQSDGIQ
Sbjct: 118 TFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQ 177
Query: 564 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSWEDQCSYKWWQKYQKRKFHCANLT 743
QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVS EDQCSYKWWQKYQKRKFHCANLT
Sbjct: 178 QAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLT 237
Query: 744 SWPRWLYSLYDAETLMDRIKKQLREWDENLKEDSLPSNPIDFSYRVAACLPIDDVLRIQL 923
SWPRWLYSLYDAETLMDRIKKQLREWDENLK+DSLPSNPIDFSYRVAACLPIDDVLRIQL
Sbjct: 238 SWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQL 297
Query: 924 P*IGSAIQRLRCELDIMNQCTSL 992
IGSAIQRLRCELDIMN+CTSL
Sbjct: 298 LKIGSAIQRLRCELDIMNKCTSL 320
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,712,271
Number of extensions: 763150
Number of successful extensions: 1972
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1961
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013256
(993 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 402 e-109
>Sscrofa_Chr13
|| Length = 218635234
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Plus
Query: 204 tatctgggctctgacatggaggaatttcacggcaggactctgcacgacgatgacagctgt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66170540 tatctgggctctgacatggaggaatttcacggcaggactctgcacgacgatgacagctgt 66170599
Query: 264 caggtgattccagtgctgccacaggtgatgatgattctgattcctgggcagactctgcct 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66170600 caggtgattccagtgctgccacaggtgatgatgattctgattcctgggcagactctgcct 66170659
Query: 324 cttcagctcttcagtccccaagaagtcagtatggtgcggaatttaattcagaaggataga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66170660 cttcagctcttcagtccccaagaagtcagtatggtgcggaatttaattcagaaggataga 66170719
Query: 384 acctttgcagttctcgcatacag 406
|||||||||||||||||||||||
Sbjct: 66170720 acctttgcagttctcgcatacag 66170742
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 556 gaatccagcaagctaaagtgcaaattcttcctgaatgtgtgttgccttcaaccatgtctg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66176075 gaatccagcaagctaaagtgcaaattcttcctgaatgtgtgttgccttcaaccatgtctg 66176134
Query: 616 cagttcagttagaatccctcaataagtgccagatatttccttcaaaacctgtctcatggg 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66176135 cagttcagttagaatccctcaataagtgccagatatttccttcaaaacctgtctcatggg 66176194
Query: 676 aagaccagtgttcatataaatggtggcagaaataccagaag 716
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 66176195 aagaccagtgttcatataaatggtggcagaaataccagaag 66176235
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 405 agtaatgtacaggaaagggaagcacagtttggaacaacagcagagatatacgcttatcga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66171572 agtaatgtacaggaaagggaagcacagtttggaacaacagcagagatatacgcttatcga 66171631
Query: 465 gaagaacaggatttcggaattgaaattgtgaaagtgaaagcaataggaagacaaagattc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66171632 gaagaacaggatttcggaattgaaattgtgaaagtgaaagcaataggaagacaaagattc 66171691
Query: 525 aaagtccttgaaatcaggacacagtcagacgg 556
||||||||||||||||||||||||||||||||
Sbjct: 66171692 aaagtccttgaaatcaggacacagtcagacgg 66171723
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 90 gcagaggatgaggaagaagatgagattgaaatggaagttgaagaccaggatagcaaagaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66169818 gcagaggatgaggaagaagatgagattgaaatggaagttgaagaccaggatagcaaagaa 66169877
Query: 150 cccaagaaaccaaacatcatcaattttgacaccagtctgcccacatcacataca 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66169878 cccaagaaaccaaacatcatcaattttgacaccagtctgcccacatcacataca 66169931
Score = 212 bits (107), Expect = 3e-52
Identities = 113/115 (98%)
Strand = Plus / Plus
Query: 863 agatttttcttacagagtagctgcttgtcttcctatcgatgatgtattaagaattcagct 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66185583 agatttttcttacagagtagctgcttgtcttcctatcgatgatgtattaagaattcagct 66185642
Query: 923 cccttaaattggcagtgccatccagcgacttcgctgtgaactagacatcatgaac 977
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66185643 ccttaaaattggcagtgccatccagcgacttcgctgtgaactagacatcatgaac 66185697
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 ggctcctccgcgggtaaacagacatggccggcgagggggatccgcaggacgctgcgcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66166406 ggctcctccgcgggtaaacagacatggccggcgagggggatccgcaggacgctgcgcacg 66166465
Query: 61 acatgggcaatcacctgccgctcctacctg 90
||||||||||||||||||||||||||||||
Sbjct: 66166466 acatgggcaatcacctgccgctcctacctg 66166495
Score = 161 bits (81), Expect = 9e-37
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 780 gaaaccttaatggatagaattaagaaacagctacgtgaatgggatgaaaatctaaaagag 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66184843 gaaaccttaatggatagaattaagaaacagctacgtgaatgggatgaaaatctaaaagag 66184902
Query: 840 gattctcttccttccaatccaatag 864
|||||||||||||| ||||||||||
Sbjct: 66184903 gattctcttccttcaaatccaatag 66184927
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 715 agagaaagtttcattgtgcaaatttgacttcatggcctcgctggctgtattctttatatg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66183648 agagaaagtttcattgtgcaaatttgacttcatggcctcgctggctgtattctttatatg 66183707
Query: 775 atgctg 780
||||||
Sbjct: 66183708 atgctg 66183713
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,551,583
Number of extensions: 198
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 8
Length of query: 993
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 972
Effective length of database: 2,808,413,156
Effective search space: 2729777587632
Effective search space used: 2729777587632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)