Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013274
(1730 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850670.1| PREDICTED: hypothetical protein XP_845577 [Cani... 328 8e-90
>ref|XP_850670.1| PREDICTED: hypothetical protein XP_845577 [Canis familiaris].
Length = 296
Score = 328 bits (842), Expect = 8e-90
Identities = 185/320 (57%), Positives = 206/320 (64%), Gaps = 4/320 (1%)
Frame = +2
Query: 746 MDRPRXXXXXXXXXXXXXXXXXPEVWVQVRMEATESLSFTVRCGFLGSGSISLVTVSYGG 925
MDRPR PEVWVQV+MEA +S SFTVRCGFLGSGS+SLVTVS GG
Sbjct: 1 MDRPRALVLLLALLTLCITAGTPEVWVQVQMEAAKSPSFTVRCGFLGSGSVSLVTVSSGG 60
Query: 926 PDGAGGTKLAVLHPTLGTQHWAPACQAHWETRSSISLTLE-ASEGRSSRHNTTFCCRFTS 1102
PDGAGGT+LAVLHP G Q W+P QAHWET++SISLTLE SEGRS NTTFCC+F S
Sbjct: 61 PDGAGGTRLAVLHPEFGIQQWSPTRQAHWETKTSISLTLEGGSEGRSPSPNTTFCCKFVS 120
Query: 1103 FPEGSQEACGNLSLSTDQGLAAPTPAPVLRADLAGILGVSGVFFFGSIYLLYLLRRQRHW 1282
FPEGSQEACGN L+T+QGL APTPAP+LRADLAGILGVSGV FG +YLL+LLRRQ+HW
Sbjct: 121 FPEGSQEACGNPFLNTNQGLPAPTPAPILRADLAGILGVSGVLLFGCVYLLHLLRRQKHW 180
Query: 1283 SVTKLQPPRQ--NSPQTQRRASAAGQASLTSLHGPCATIST-SYLCPASLHPVLPPQPLP 1453
PP PQTQ T P AT+ST + CPA++ L P PL
Sbjct: 181 F---YGPPSTALTGPQTQ-----------TPARVPHATVSTNNCYCPATVDMALRPPPLS 226
Query: 1454 KWATLPAHPARRPQSLARWAPPPGSVRSSFVSMENWLYAQAGTRPLHARATPSPLLGPLG 1633
+WA LPAH A Q A WAP P S R+SF+SMEN LYAQAG P A SP L P
Sbjct: 227 QWAALPAHTAYPRQPPAHWAPLPASARNSFISMENGLYAQAGEWPFQA----SPNLVPFP 282
Query: 1634 ARXHKEELAAR*KGPKPGHL 1693
H G GHL
Sbjct: 283 KSGH---------GAMEGHL 293
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,954,733
Number of extensions: 2616178
Number of successful extensions: 19216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 18581
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 468
Effective length of database: 15,274,216
Effective search space: 7148333088
Effective search space used: 7148333088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013274
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013274
(1730 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698180.1| PREDICTED: hypothetical protein [Bos taurus]. 384 e-106
Alignment gi|XP_591810.3| PREDICTED: hypothetical protein [Bos taurus]. 384 e-106
Alignment gi|XP_002690539.1| PREDICTED: hyperpolarization activated cycli... 50 8e-06
>ref|XP_002698180.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 501
Score = 384 bits (987), Expect = e-106
Identities = 207/310 (66%), Positives = 222/310 (71%), Gaps = 13/310 (4%)
Frame = +2
Query: 746 MDRPRXXXXXXXXXXXXXXXXXPEVWVQVRMEATESLSFTVRCGFLGSGSISLVTVSYGG 925
MDRPR PEVW+QV+ EATE+ SFTVRCGFLGSGSISLVTVSYGG
Sbjct: 1 MDRPRALGLLWVLLTLCLTAGTPEVWLQVQREATEA-SFTVRCGFLGSGSISLVTVSYGG 59
Query: 926 PDGAGGTKLAVLHPTLGTQHWAPACQAHWETRSSISLTLEASEGRS--SRHNTTFCCRFT 1099
PD AGGT LAVLHPTLGT++W AC+A WET +SISLTLE + + S NTTFCC+FT
Sbjct: 60 PDSAGGTTLAVLHPTLGTKNWTAACRARWETSTSISLTLERAPTAAGDSSPNTTFCCKFT 119
Query: 1100 SFPEGSQEACGNLSLSTDQGLAAPTPAPVLRADLAGILGVSGVFFFGSIYLLYLLRRQRH 1279
SFPEGSQEACG LS STDQ L AP+PA VLRADLAGILGVSGV G IYLLYLLRRQRH
Sbjct: 120 SFPEGSQEACGKLSASTDQELPAPSPASVLRADLAGILGVSGVLLSGCIYLLYLLRRQRH 179
Query: 1280 WSVTKLQPPRQNSPQTQRRASAAGQASLTSLHGPCATIST--SYLCPASLHPVLPPQPLP 1453
WSV KLQPPR SPQT R SAAGQASLTS H P AT +T +Y PA+LHPV PPQPLP
Sbjct: 180 WSVMKLQPPRHGSPQTDGRTSAAGQASLTSFHVPYATAATTSNYFSPATLHPVPPPQPLP 239
Query: 1454 KWATLPAHPARRPQSLARWAPPPGSVRSSFVSMENWLYAQAGTRPLHARATPSPL----- 1618
W H ARRPQS WAPPP S RSSFVS+EN LYAQ RPLHA A L
Sbjct: 240 GWVPPLTHAARRPQSPGPWAPPPASARSSFVSVENRLYAQTEKRPLHAGADHISLPDRLG 299
Query: 1619 ----LGPLGA 1636
LGP GA
Sbjct: 300 RKAALGPSGA 309
>ref|XP_591810.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 501
Score = 384 bits (987), Expect = e-106
Identities = 207/310 (66%), Positives = 222/310 (71%), Gaps = 13/310 (4%)
Frame = +2
Query: 746 MDRPRXXXXXXXXXXXXXXXXXPEVWVQVRMEATESLSFTVRCGFLGSGSISLVTVSYGG 925
MDRPR PEVW+QV+ EATE+ SFTVRCGFLGSGSISLVTVSYGG
Sbjct: 1 MDRPRALGLLWVLLTLCLTAGTPEVWLQVQREATEA-SFTVRCGFLGSGSISLVTVSYGG 59
Query: 926 PDGAGGTKLAVLHPTLGTQHWAPACQAHWETRSSISLTLEASEGRS--SRHNTTFCCRFT 1099
PD AGGT LAVLHPTLGT++W AC+A WET +SISLTLE + + S NTTFCC+FT
Sbjct: 60 PDSAGGTTLAVLHPTLGTKNWTAACRARWETSTSISLTLERAPTAAGDSSPNTTFCCKFT 119
Query: 1100 SFPEGSQEACGNLSLSTDQGLAAPTPAPVLRADLAGILGVSGVFFFGSIYLLYLLRRQRH 1279
SFPEGSQEACG LS STDQ L AP+PA VLRADLAGILGVSGV G IYLLYLLRRQRH
Sbjct: 120 SFPEGSQEACGKLSASTDQELPAPSPASVLRADLAGILGVSGVLLSGCIYLLYLLRRQRH 179
Query: 1280 WSVTKLQPPRQNSPQTQRRASAAGQASLTSLHGPCATIST--SYLCPASLHPVLPPQPLP 1453
WSV KLQPPR SPQT R SAAGQASLTS H P AT +T +Y PA+LHPV PPQPLP
Sbjct: 180 WSVMKLQPPRHGSPQTDGRTSAAGQASLTSFHVPYATAATTSNYFSPATLHPVPPPQPLP 239
Query: 1454 KWATLPAHPARRPQSLARWAPPPGSVRSSFVSMENWLYAQAGTRPLHARATPSPL----- 1618
W H ARRPQS WAPPP S RSSFVS+EN LYAQ RPLHA A L
Sbjct: 240 GWVPPLTHAARRPQSPGPWAPPPASARSSFVSVENRLYAQTEKRPLHAGADHISLPDRLG 299
Query: 1619 ----LGPLGA 1636
LGP GA
Sbjct: 300 RKAALGPSGA 309
>ref|XP_002690539.1| PREDICTED: hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Bos taurus].
Length = 1201
Score = 49.7 bits (117), Expect = 8e-06
Identities = 64/216 (29%), Positives = 75/216 (34%), Gaps = 4/216 (1%)
Frame = +3
Query: 507 PCSHSSSAWGQGKPCPCPFKSLEGGGPRPGFGTLRETEGSGAGSAVLPGPPRTHRLPAMR 686
P S SS G G P P S GFG + G S+ P T P R
Sbjct: 878 PSSSSSPPPGVGGSSPAPTPSTAAAAATAGFGHFHKALGGSLSSS--DSPLLTPLQPGAR 935
Query: 687 TETQVLSPPRQPPSLAGG----EPWTGPGPSACSWRC*LSASPLGLLRCGCKFGWRPPSP 854
+ Q PP P GG EP+ P PSA S S+SP L G P
Sbjct: 936 SP-QXSQPPPPLPGARGGLGLAEPFLPPPPSARS----PSSSPGQL-------GQPPGEL 983
Query: 855 CPSLSAVDSWDPALSPW*L*ATGALMVPEGPSWQCCTRHWAPSTGPQPARPTGRPEAAFP 1034
P L+A P P L + G S + P GP P + P FP
Sbjct: 984 SPGLAAGPPSTPETPPR---QPERLSLVAGASGGASPVAFTPRGGPSPPGHSPGPPRTFP 1040
Query: 1035 SPWKRLRGEAPDTTPPFAADLPPSRRAPRRPVGTSP 1142
S R G P A+ PP + RR GT P
Sbjct: 1041 SAPPRASGSHGSLLLPPASSPPPPQVPQRR--GTPP 1074
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,973,393
Number of extensions: 2551808
Number of successful extensions: 18356
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 17875
Number of HSP's successfully gapped: 3
Length of query: 576
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 468
Effective length of database: 14,107,870
Effective search space: 6602483160
Effective search space used: 6602483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013274
(1730 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124397.1| PREDICTED: transmembrane protein PVRIG-like ... 583 e-166
>ref|XP_003124397.1| PREDICTED: transmembrane protein PVRIG-like [Sus scrofa].
Length = 307
Score = 583 bits (1502), Expect = e-166
Identities = 286/307 (93%), Positives = 287/307 (93%)
Frame = +2
Query: 746 MDRPRXXXXXXXXXXXXXXXXXPEVWVQVRMEATESLSFTVRCGFLGSGSISLVTVSYGG 925
MDRPR PEVWVQVRMEATESLSFTVRCGFLGSGSISLVTVSYGG
Sbjct: 1 MDRPRALGLLLALLTLCITAGTPEVWVQVRMEATESLSFTVRCGFLGSGSISLVTVSYGG 60
Query: 926 PDGAGGTKLAVLHPTLGTQHWAPACQAHWETRSSISLTLEASEGRSSRHNTTFCCRFTSF 1105
PDGAGGTKLAVLHPTLGTQHWAPACQAHWETRSSISLTLEASEGRSSRHNTTFCCRFTSF
Sbjct: 61 PDGAGGTKLAVLHPTLGTQHWAPACQAHWETRSSISLTLEASEGRSSRHNTTFCCRFTSF 120
Query: 1106 PEGSQEACGNLSLSTDQGLAAPTPAPVLRADLAGILGVSGVFFFGSIYLLYLLRRQRHWS 1285
PEGSQEACGNLSLSTDQGLAAPTPAPVLRADLAGILGVSGVFFFGSIYLLYLLRRQRHWS
Sbjct: 121 PEGSQEACGNLSLSTDQGLAAPTPAPVLRADLAGILGVSGVFFFGSIYLLYLLRRQRHWS 180
Query: 1286 VTKLQPPRQNSPQTQRRASAAGQASLTSLHGPCATISTSYLCPASLHPVLPPQPLPKWAT 1465
VTKLQPPRQNSPQTQRRASAAGQASLTSLHGPCATISTSYLCPASLHPVLPPQPLPKWAT
Sbjct: 181 VTKLQPPRQNSPQTQRRASAAGQASLTSLHGPCATISTSYLCPASLHPVLPPQPLPKWAT 240
Query: 1466 LPAHPARRPQSLARWAPPPGSVRSSFVSMENWLYAQAGTRPLHARATPSPLLGPLGARXH 1645
LPAHPARRPQSLARWAPPPGSVRSSFVSMENWLYAQAGTRPLHARATPSPLLGPLG R
Sbjct: 241 LPAHPARRPQSLARWAPPPGSVRSSFVSMENWLYAQAGTRPLHARATPSPLLGPLGPRAT 300
Query: 1646 KEELAAR 1666
KE+LAAR
Sbjct: 301 KEDLAAR 307
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,984,615
Number of extensions: 1701750
Number of successful extensions: 12215
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11809
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 472
Effective length of database: 8,754,644
Effective search space: 4132191968
Effective search space used: 4132191968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013274
(1730 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086523.1| PREDICTED: transmembrane protein PVRIG-like ... 194 2e-49
Alignment gi|NP_001028448.2| histone-lysine N-methyltransferase MLL2 [Mus... 53 8e-07
>ref|XP_003086523.1| PREDICTED: transmembrane protein PVRIG-like [Mus musculus].
Length = 233
Score = 194 bits (492), Expect = 2e-49
Identities = 109/191 (57%), Positives = 128/191 (67%), Gaps = 2/191 (1%)
Frame = +2
Query: 812 PEVWVQVRMEATESLSFTVRCGFLGSGSISLVTVSYGGPDGAGGTKLAVLHPTLGTQHWA 991
PEVWVQV+MEAT SF+V CG LG ISLVTVS G AG TKLAVLHP GTQ WA
Sbjct: 23 PEVWVQVQMEATNLSSFSVHCGVLGYSLISLVTVSCEGFVDAGRTKLAVLHPEFGTQQWA 82
Query: 992 PACQAHWETRSSIS--LTLEASEGRSSRHNTTFCCRFTSFPEGSQEACGNLSLSTDQGLA 1165
PA QAHWET +S+S LT+ S+ RSS NTTFCC F +FP GS+ AC +L S D GL+
Sbjct: 83 PARQAHWETPNSVSVTLTMGQSKARSSLANTTFCCEFVTFPHGSRVACRDLHRS-DPGLS 141
Query: 1166 APTPAPVLRADLAGILGVSGVFFFGSIYLLYLLRRQRHWSVTKLQPPRQNSPQTQRRASA 1345
APTPA L+ADL ILG SGVF FG I++L L +QRHW ++K QP T +A
Sbjct: 142 APTPALNLQADLVRILGTSGVFLFGFIFILCLRWQQRHWCLSKSQP-----SLTSTQAQV 196
Query: 1346 AGQASLTSLHG 1378
Q++LT G
Sbjct: 197 ETQSNLTPTSG 207
>ref|NP_001028448.2| histone-lysine N-methyltransferase MLL2 [Mus musculus].
Length = 5588
Score = 52.8 bits (125), Expect = 8e-07
Identities = 84/272 (30%), Positives = 103/272 (37%), Gaps = 17/272 (6%)
Frame = +3
Query: 354 PALPKFCRLPPLLRGARPEVRASFLRGSQGPSPLLLRVRPTQGWFGDLSRPPCSHSSSAW 533
PA+P P + G +P A L GSQ P L RP Q G S+PP S +
Sbjct: 4184 PAVPHLLAQPSVSLGEQPGPMAQNLLGSQQPLGL---DRPIQNNTG--SQPPKSGPAPQS 4238
Query: 534 GQGKPCPCPFKSLEGGGPRPGFGTLR-ETEGSGAGSAVLP--GPPRTHRLPA--MRTETQ 698
GQG P G G P G LR + +G A + L P + +L A M+ + Q
Sbjct: 4239 GQGPP---------GAGVMPTVGQLRAQLQGVLAKNPQLRHLSPQQQQQLQALLMQRQLQ 4289
Query: 699 VLSPPRQPPSLAGGEPWTGPGPSACSWRC*LSASPLGLLRCGCKFGWRPPSPCPSLSAVD 878
RQ P EP T P P GLL C P P +V
Sbjct: 4290 QSQAVRQTPPFQ--EPGTQPSPLQ------------GLLGC---------QPQPGGFSVS 4326
Query: 879 SWDPALSPW*L*ATGALMVPEGPSWQCCTRHWAPSTGP--QPARPTGRPE--------AA 1028
P L GA P+GP + A STGP PA PT P +
Sbjct: 4327 QTGP------LQELGAGSRPQGPP-RLPVPQGALSTGPVLGPAHPTPPPSSPQEPKRPSQ 4379
Query: 1029 FPSPWKRLRGEAPDTTPPF--AADLPPSRRAP 1118
PSP +L P T P A +LPP R +P
Sbjct: 4380 LPSPSAQLTPTHPGTPKPQGPALELPPGRVSP 4411
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,696,494
Number of extensions: 2022037
Number of successful extensions: 12986
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12572
Number of HSP's successfully gapped: 2
Length of query: 576
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 469
Effective length of database: 12,403,707
Effective search space: 5817338583
Effective search space used: 5817338583
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013274
(1730 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076975.2| transmembrane protein PVRIG [Homo sapiens]. 326 5e-89
>ref|NP_076975.2| transmembrane protein PVRIG [Homo sapiens].
Length = 326
Score = 326 bits (835), Expect = 5e-89
Identities = 184/322 (57%), Positives = 206/322 (63%), Gaps = 10/322 (3%)
Frame = +2
Query: 704 VPTTAAPEPGRRGAMDRPRXXXXXXXXXXXXXXXXXPEVWVQVRMEATESLSFTVRCGFL 883
VP PEPG GAM R PEVWVQVRMEATE SFT+RCGFL
Sbjct: 7 VPALQPPEPGLEGAMGH-RTLVLPWVLLTLCVTAGTPEVWVQVRMEATELSSFTIRCGFL 65
Query: 884 GSGSISLVTVSYGGPDGAGGTKLAVLHPTLGTQHWAPACQAHWETRSSISLTLEASEGRS 1063
GSGSISLVTVS+GGP+GAGGT LAVLHP G + WAPA QA WET+SSISL LE S S
Sbjct: 66 GSGSISLVTVSWGGPNGAGGTTLAVLHPERGIRQWAPARQARWETQSSISLILEGSGASS 125
Query: 1064 SRHNTTFCCRFTSFPEGSQEACGNLSLSTDQGLAA-PTPAPVLRADLAGILGVSGVFFFG 1240
NTTFCC+F SFPEGS EACG+L S+D GL+A PTPAP+LRADLAGILGVSGV FG
Sbjct: 126 PCANTTFCCKFASFPEGSWEACGSLPPSSDPGLSAPPTPAPILRADLAGILGVSGVLLFG 185
Query: 1241 SIYLLYLLRRQRHWSVTKLQPPRQNSPQTQRRASAAGQASLTSLHGPCATISTSYLCPAS 1420
+YLL+LLRR +H +LQP R + + RA A QAS +LH P ATI+TS PA+
Sbjct: 186 CVYLLHLLRRHKHRPAPRLQPSRTSPQAPRARAWAPSQASQAALHVPYATINTS-CRPAT 244
Query: 1421 LHPVLPPQPLPKWATLPAHPARRPQSLARWAPPPGSVRSSFVSMENWLYAQAGTRPLHA- 1597
L P WA+LP H A RPQ A WA P R SFVS+EN LYAQAG RP H
Sbjct: 245 LDTAHPHGGPSWWASLPTHAAHRPQGPAAWASTPIPARGSFVSVENGLYAQAGERPPHTG 304
Query: 1598 --------RATPSPLLGPLGAR 1639
P + GPLG R
Sbjct: 305 PGLTLFPDPRGPRAMEGPLGVR 326
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,912,200
Number of extensions: 2504698
Number of successful extensions: 17417
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 16896
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 468
Effective length of database: 14,737,052
Effective search space: 6896940336
Effective search space used: 6896940336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013274
(1730 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 852 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 852 bits (430), Expect = 0.0
Identities = 447/455 (98%)
Strand = Plus / Minus
Query: 353 tcctgctcttcccaaattctgccgccttnnnnnnntgcttcgcggggcgaggcccgaggt 412
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7578668 tcctgctcttcccaaattctgccgccttctccccctgcttcgcggggcgaggcccgaggt 7578609
Query: 413 cagggcctccttcctaaggggaagccagggcccctccccgctcctcctcagggtccggcc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578608 cagggcctccttcctaaggggaagccagggcccctccccgctcctcctcagggtccggcc 7578549
Query: 473 cacccagggctggttcggggacctgagccgcccaccctgctcacactcaagttcggcatg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578548 cacccagggctggttcggggacctgagccgcccaccctgctcacactcaagttcggcatg 7578489
Query: 533 gggacagggaaaaccttgtccctgtccctttaagtctcttgagggagggggtcctcggcc 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7578488 gggacagggaaaaccttgtccctgtccctttaagtctcttgagggagggggtcctcagcc 7578429
Query: 593 tgggttcggcaccctgagggagacagaaggaagtggggcaggttcggcagtgctcccggg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578428 tgggttcggcaccctgagggagacagaaggaagtggggcaggttcggcagtgctcccggg 7578369
Query: 653 gcctcctcgcacacacagacttcctgcgatgagaacggaaacccaggtgctgtccccacc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578368 gcctcctcgcacacacagacttcctgcgatgagaacggaaacccaggtgctgtccccacc 7578309
Query: 713 acggcagcccccgagcctggcaggaggggagccatggacaggccccgggccctcggcctg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578308 acggcagcccccgagcctggcaggaggggagccatggacaggccccgggccctcggcctg 7578249
Query: 773 ctcttggcgctgctgactctctgcatcaccgctgg 807
|||||||||||||||||||||||||||||||||||
Sbjct: 7578248 ctcttggcgctgctgactctctgcatcaccgctgg 7578214
Score = 700 bits (353), Expect = 0.0
Identities = 353/353 (100%)
Strand = Plus / Minus
Query: 806 gggactcctgaggtgtgggtgcaagttcggatggaggccaccgagtccctgtccttcact 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578130 gggactcctgaggtgtgggtgcaagttcggatggaggccaccgagtccctgtccttcact 7578071
Query: 866 gtccgctgtggattcctgggatccggctctatctccctggtgactgtgagctacgggggc 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578070 gtccgctgtggattcctgggatccggctctatctccctggtgactgtgagctacgggggc 7578011
Query: 926 cctgatggtgccggagggaccaagctggcagtgctgcacccgacattgggcacccagcac 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578010 cctgatggtgccggagggaccaagctggcagtgctgcacccgacattgggcacccagcac 7577951
Query: 986 tgggccccagcctgccaggcccactgggagaccagaagcagcatttccctcaccctggaa 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577950 tgggccccagcctgccaggcccactgggagaccagaagcagcatttccctcaccctggaa 7577891
Query: 1046 gcgtctgaggggagaagctccagacacaacaccaccttttgctgcagatttacctccttc 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577890 gcgtctgaggggagaagctccagacacaacaccaccttttgctgcagatttacctccttc 7577831
Query: 1106 ccggagggctcccaggaggcctgtgggaacctctccctcagcacagaccaagg 1158
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577830 ccggagggctcccaggaggcctgtgggaacctctccctcagcacagaccaagg 7577778
Score = 696 bits (351), Expect = 0.0
Identities = 380/389 (97%), Gaps = 1/389 (0%)
Strand = Plus / Minus
Query: 1343 gcagccggccaggcctccctgacttctctccacggcccctgcgccaccatcagcaccagc 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577285 gcagccggccaggcctccctgacttctctccacggcccctgcgccaccatcagcaccagc 7577226
Query: 1403 tacctctgtccggcaagtctgcacccggtcctcccgccccagccactgcccaagtgggcg 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577225 tacctctgtccggcaagtctgcacccggtcctcccgccccagccactgcccaagtgggcg 7577166
Query: 1463 acgctgcccgcccacccggcacgtcgtccccagagcctggcccgctgggcgcccccgccc 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577165 acgctgcccgcccacccggcacgtcgtccccagagcctggcccgctgggcgcccccgccc 7577106
Query: 1523 ggctccgtgcgcagcagcttcgtctccatggagaactggctctatgctcaggcaggaacg 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577105 ggctccgtgcgcagcagcttcgtctccatggagaactggctctatgctcaggcaggaacg 7577046
Query: 1583 aggccgctccacgcccgtgccacccccagccctctcctgggccctctgggggccagggnn 1642
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7577045 aggccgctccacgcccgtgccacccccagccctctcctgggccctctggggcccagggcc 7576986
Query: 1643 cacaaggaggaactagcggctcgctgaaaaggacccaaacccggt-cacctctctcgcct 1701
||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 7576985 accaaggaggacctagcggctcgctgagaaggacccaaacccggtccacctctctcgcct 7576926
Query: 1702 ccccgggctcggggacccccttgggcgcg 1730
||| |||||||||||||||||||||||||
Sbjct: 7576925 cccggggctcggggacccccttgggcgcg 7576897
Score = 504 bits (254), Expect = e-140
Identities = 299/318 (94%), Gaps = 9/318 (2%)
Strand = Plus / Minus
Query: 1 cctcgtggcctggagataagagaagagccacagatgacgacgcctctggcctgaccaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7579011 cctcgtggcctggagataagagaagagccacagatgacgacgcctctggcctgaccaact 7578952
Query: 61 ggaagccagcagccctcagcggccggggaggctgcnnnnnnnnccggggcagaggtccgt 120
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7578951 ggaagccagcagccctcagcggccggggaggctgcg---------ggggcagaggtccgt 7578901
Query: 121 tgggggccgtttgaggtcaggcttcaggacaaggtgctccgtggggcagctggatagggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578900 tgggggccgtttgaggtcaggcttcaggacaaggtgctccgtggggcagctggatagggg 7578841
Query: 181 cctcgggagggaggtctgggctnnnnnnntccacgcgggactgggtgctgcggccggcag 240
|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct: 7578840 cctcgggagggaggcctgggctgggggggtccacgcaggactgggtgctgcggccggcag 7578781
Query: 241 cttcaggtgtcctcagcaggcaagcgatgggtcaagctacgcctggccctttggcagccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7578780 cttcaggtgtcctcagcaggcaagcgatgggtcaagctacgcctggccctttggcagccc 7578721
Query: 301 ccctgctggtgtccccct 318
||||||||||||||||||
Sbjct: 7578720 ccctgctggtgtccccct 7578703
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 1156 agggctcgctgctcctactccagcccctgtgctgcgggctgacctggcagggatcttggg 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577703 agggctcgctgctcctactccagcccctgtgctgcgggctgacctggcagggatcttggg 7577644
Query: 1216 ggtctccggggtctttttcttcggctccatctacctcctctacctcctgcgtcgacaaag 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577643 ggtctccggggtctttttcttcggctccatctacctcctctacctcctgcgtcgacaaag 7577584
Query: 1276 gcactggt 1283
||||||||
Sbjct: 7577583 gcactggt 7577576
Score = 125 bits (63), Expect = 9e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 1281 ggtctgtcaccaagcttcagccacccagacagaacagcccccagacacagaggcgagcaa 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577487 ggtctgtcaccaagcttcagccacccagacagaacagcccccagacacagaggcgagcaa 7577428
Query: 1341 gcg 1343
|||
Sbjct: 7577427 gcg 7577425
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,598,764
Number of extensions: 337
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 7
Length of query: 1730
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1708
Effective length of database: 2,808,408,574
Effective search space: 4796761844392
Effective search space used: 4796761844392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)