Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013284
(978 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074386.1| dnaJ homolog subfamily C member 30 [Bos taur... 320 1e-87
Alignment gi|NP_001073739.1| dnaJ homolog subfamily A member 3, mitochond... 66 5e-11
Alignment gi|XP_002699374.1| PREDICTED: heat shock 40kD protein 2-like is... 64 3e-10
Alignment gi|XP_002699372.1| PREDICTED: heat shock 40kD protein 2-like is... 64 3e-10
Alignment gi|XP_002684605.1| PREDICTED: heat shock 40kD protein 2-like [B... 64 3e-10
Alignment gi|XP_002684604.1| PREDICTED: heat shock 40kD protein 2-like [B... 64 3e-10
Alignment gi|XP_002699373.1| PREDICTED: heat shock 40kD protein 2-like is... 63 4e-10
Alignment gi|XP_613027.3| PREDICTED: heat shock 40kD protein 2-like isofo... 63 4e-10
Alignment gi|XP_001252102.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A... 62 8e-10
Alignment gi|NP_001179968.1| dnaJ homolog subfamily B member 9 [Bos tauru... 62 1e-09
>ref|NP_001074386.1| dnaJ homolog subfamily C member 30 [Bos taurus].
Length = 226
Score = 320 bits (820), Expect = 1e-87
Identities = 162/225 (72%), Positives = 173/225 (76%)
Frame = +3
Query: 30 MAAQXXXXXXXXXXXXXWQARGVPQNPGLGLSLKTRTYSQSDGPYSRTALYELLGVPSTA 209
MAA+ WQ RGVPQNP GL + RTY++SDGPYSRTALY+LLGVPSTA
Sbjct: 1 MAARRDLKWSQLLLWRLWQPRGVPQNPRSGLGPEARTYTRSDGPYSRTALYDLLGVPSTA 60
Query: 210 TQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDL 389
TQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVL S TLRRKYDRGLLSDEDL
Sbjct: 61 TQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLGSTTLRRKYDRGLLSDEDL 120
Query: 390 RGPGVRPSKKPTADPDSPRTPPPASRAHGRGQASAGASNTMFNFDAFYRAHYGEQXXXXX 569
RGPGVRPSK P ADP++PRTPPP RAHGRG AS GA TMF+FDAFY+AHYGEQ
Sbjct: 121 RGPGVRPSKTPAADPETPRTPPPGPRAHGRGPASPGAKRTMFDFDAFYQAHYGEQLERER 180
Query: 570 XXXXXXXXXXKQQEDRANKGLRWDEIRDSAFFLFLLTVFIIMSFR 704
K QEDRA KGL WDE RD AF L LLTVF+I+S R
Sbjct: 181 RLRARREAFRKMQEDRAKKGLGWDETRDLAFVLVLLTVFLIVSSR 225
>ref|NP_001073739.1| dnaJ homolog subfamily A member 3, mitochondrial [Bos taurus].
Length = 453
Score = 65.9 bits (159), Expect = 5e-11
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKY 359
Y++LGVP A+Q +IK AYY+ + YHPD N +A E+F+++++AY VLS R++Y
Sbjct: 95 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 154
Query: 360 DRGLLSDEDLRGPGVRPSKK------PTADPD 437
D + D PG S + PT DP+
Sbjct: 155 DTYGSAGFD---PGAGSSGQSYWKGGPTVDPE 183
>ref|XP_002699374.1| PREDICTED: heat shock 40kD protein 2-like isoform 3 [Bos taurus].
Length = 235
Score = 63.5 bits (153), Expect = 3e-10
Identities = 37/103 (35%), Positives = 50/103 (48%)
Frame = +3
Query: 147 QSDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYV 326
Q GP + YELLGV A+ ++K A++ +S HPDR+ G+ RF +S+AY
Sbjct: 25 QRSGPSN---YYELLGVQPGASTEEVKRAFFSKSKELHPDRDPGNPALHSRFVELSEAYQ 81
Query: 327 VLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPP 455
VLS RR YD L S + PG + S PP
Sbjct: 82 VLSREQSRRSYDHQLRSAASPKSPGTTAHPRSAHQAHSSGAPP 124
>ref|XP_002699372.1| PREDICTED: heat shock 40kD protein 2-like isoform 1 [Bos taurus].
Length = 275
Score = 63.5 bits (153), Expect = 3e-10
Identities = 37/103 (35%), Positives = 50/103 (48%)
Frame = +3
Query: 147 QSDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYV 326
Q GP + YELLGV A+ ++K A++ +S HPDR+ G+ RF +S+AY
Sbjct: 25 QRSGPSN---YYELLGVQPGASTEEVKRAFFSKSKELHPDRDPGNPALHSRFVELSEAYQ 81
Query: 327 VLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPP 455
VLS RR YD L S + PG + S PP
Sbjct: 82 VLSREQSRRSYDHQLRSAASPKSPGTTAHPRSAHQAHSSGAPP 124
>ref|XP_002684605.1| PREDICTED: heat shock 40kD protein 2-like [Bos taurus].
Length = 235
Score = 63.5 bits (153), Expect = 3e-10
Identities = 37/103 (35%), Positives = 50/103 (48%)
Frame = +3
Query: 147 QSDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYV 326
Q GP + YELLGV A+ ++K A++ +S HPDR+ G+ RF +S+AY
Sbjct: 25 QRSGPSN---YYELLGVQPGASTEEVKRAFFSKSKELHPDRDPGNPALHSRFVELSEAYQ 81
Query: 327 VLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPP 455
VLS RR YD L S + PG + S PP
Sbjct: 82 VLSREQSRRSYDHQLRSAASPKSPGTTAHPRSAHQAHSSGAPP 124
>ref|XP_002684604.1| PREDICTED: heat shock 40kD protein 2-like [Bos taurus].
Length = 275
Score = 63.5 bits (153), Expect = 3e-10
Identities = 37/103 (35%), Positives = 50/103 (48%)
Frame = +3
Query: 147 QSDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYV 326
Q GP + YELLGV A+ ++K A++ +S HPDR+ G+ RF +S+AY
Sbjct: 25 QRSGPSN---YYELLGVQPGASTEEVKRAFFSKSKELHPDRDPGNPALHSRFVELSEAYQ 81
Query: 327 VLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPP 455
VLS RR YD L S + PG + S PP
Sbjct: 82 VLSREQSRRSYDHQLRSAASPKSPGTTAHPRSAHQAHSSGAPP 124
>ref|XP_002699373.1| PREDICTED: heat shock 40kD protein 2-like isoform 2 [Bos taurus].
Length = 236
Score = 62.8 bits (151), Expect = 4e-10
Identities = 37/104 (35%), Positives = 50/104 (48%)
Frame = +3
Query: 147 QSDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYV 326
Q GP + YELLGV A+ ++K A++ +S HPDR+ G+ RF +S+AY
Sbjct: 25 QRSGPSN---YYELLGVQPGASTEEVKRAFFSKSKELHPDRDPGNPALHSRFVELSEAYQ 81
Query: 327 VLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPPP 458
VLS RR YD L S + PG + S PP
Sbjct: 82 VLSREQSRRSYDHQLRSAASPKSPGTTAHPRSAHQAHSSSGAPP 125
>ref|XP_613027.3| PREDICTED: heat shock 40kD protein 2-like isoform 1 [Bos taurus].
Length = 236
Score = 62.8 bits (151), Expect = 4e-10
Identities = 37/104 (35%), Positives = 50/104 (48%)
Frame = +3
Query: 147 QSDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYV 326
Q GP + YELLGV A+ ++K A++ +S HPDR+ G+ RF +S+AY
Sbjct: 25 QRSGPSN---YYELLGVQPGASTEEVKRAFFSKSKELHPDRDPGNPALHSRFVELSEAYQ 81
Query: 327 VLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPPP 458
VLS RR YD L S + PG + S PP
Sbjct: 82 VLSREQSRRSYDHQLRSAASPKSPGTTAHPRSAHQAHSSSGAPP 125
>ref|XP_001252102.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A, member 1 [Bos
taurus].
Length = 397
Score = 62.0 bits (149), Expect = 8e-10
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VLS+A R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSNAKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
>ref|NP_001179968.1| dnaJ homolog subfamily B member 9 [Bos taurus].
Length = 223
Score = 61.6 bits (148), Expect = 1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKY 359
Y++LGVP +A++ Q+K A+++ + YHPD+N S +A +F I++AY LS A R++Y
Sbjct: 28 YDILGVPKSASERQVKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 86
Query: 360 DRGLLSDEDLRGPGVRPSKKP 422
D L + G G R S P
Sbjct: 87 DT-LGHNAFTNGKGQRASGSP 106
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,642,553
Number of extensions: 814452
Number of successful extensions: 5368
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 5297
Number of HSP's successfully gapped: 42
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013284
(978 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849769.1| PREDICTED: similar to Williams Beuren syndrome ... 313 1e-85
Alignment gi|XP_536990.2| PREDICTED: similar to DnaJ homolog subfamily A ... 68 1e-11
Alignment gi|XP_864372.1| PREDICTED: similar to DnaJ homolog subfamily A ... 68 1e-11
Alignment gi|XP_851751.1| PREDICTED: similar to DnaJ homolog subfamily A ... 68 1e-11
Alignment gi|XP_854953.1| PREDICTED: similar to heat shock 40kD protein 2... 63 5e-10
Alignment gi|XP_852488.1| PREDICTED: similar to DnaJ homolog subfamily A ... 62 1e-09
Alignment gi|XP_865792.1| PREDICTED: similar to DnaJ-like protein 2 isofo... 62 1e-09
Alignment gi|XP_849937.1| PREDICTED: similar to DnaJ homolog subfamily A ... 62 1e-09
Alignment gi|XP_860177.1| PREDICTED: similar to DnaJ-like protein 2 isofo... 62 1e-09
Alignment gi|XP_531970.1| PREDICTED: similar to DnaJ homolog subfamily A ... 62 1e-09
>ref|XP_849769.1| PREDICTED: similar to Williams Beuren syndrome chromosome region 18
[Canis familiaris].
Length = 226
Score = 313 bits (803), Expect = 1e-85
Identities = 158/226 (69%), Positives = 167/226 (73%)
Frame = +3
Query: 30 MAAQXXXXXXXXXXXXXWQARGVPQNPGLGLSLKTRTYSQSDGPYSRTALYELLGVPSTA 209
MAA+ W PQ PG GL + RTYSQ D PYSRTALYELLGVPSTA
Sbjct: 1 MAAKRDLRWSRRLLWRLWLLPSAPQTPGSGLGIDVRTYSQGDRPYSRTALYELLGVPSTA 60
Query: 210 TQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDL 389
TQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVL SATLRRKYDRGLLSDEDL
Sbjct: 61 TQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDL 120
Query: 390 RGPGVRPSKKPTADPDSPRTPPPASRAHGRGQASAGASNTMFNFDAFYRAHYGEQXXXXX 569
RGPGVRPS+ P D SPR PPPASRAHGRGQA+ GAS TMF+FDAFY+AHYGEQ
Sbjct: 121 RGPGVRPSRAPAGDAGSPRAPPPASRAHGRGQAATGASRTMFDFDAFYQAHYGEQLERER 180
Query: 570 XXXXXXXXXXKQQEDRANKGLRWDEIRDSAFFLFLLTVFIIMSFRF 707
+QQE+RA KG RWDE RD+ F LL FIIM FRF
Sbjct: 181 RQRARREALRRQQEERAKKGFRWDETRDTTFVFLLLMAFIIMGFRF 226
>ref|XP_536990.2| PREDICTED: similar to DnaJ homolog subfamily A member 3,
mitochondrial precursor (Tumorous imaginal discs protein
Tid56 homolog) (DnaJ protein Tid-1) (hTid-1) isoform 1
[Canis familiaris].
Length = 453
Score = 68.2 bits (165), Expect = 1e-11
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Frame = +3
Query: 150 SDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVV 329
+ P ++ Y++LGVP A+Q +IK AYY+ + YHPD N +A E+F+++++AY V
Sbjct: 85 TSSPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEV 144
Query: 330 LSSATLRRKYDRGLLSDEDLRGPGVRPSKK------PTADPD 437
LS R++YD + D PG S + PT DP+
Sbjct: 145 LSDEVKRKQYDAYGSAGFD---PGAGSSGQSYWKGGPTVDPE 183
>ref|XP_864372.1| PREDICTED: similar to DnaJ homolog subfamily A member 3,
mitochondrial precursor (Tumorous imaginal discs protein
Tid56 homolog) (DnaJ protein Tid-1) (hTid-1) isoform 3
[Canis familiaris].
Length = 402
Score = 68.2 bits (165), Expect = 1e-11
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Frame = +3
Query: 150 SDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVV 329
+ P ++ Y++LGVP A+Q +IK AYY+ + YHPD N +A E+F+++++AY V
Sbjct: 85 TSSPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEV 144
Query: 330 LSSATLRRKYDRGLLSDEDLRGPGVRPSKK------PTADPD 437
LS R++YD + D PG S + PT DP+
Sbjct: 145 LSDEVKRKQYDAYGSAGFD---PGAGSSGQSYWKGGPTVDPE 183
>ref|XP_851751.1| PREDICTED: similar to DnaJ homolog subfamily A member 3,
mitochondrial precursor (Tumorous imaginal discs protein
Tid56 homolog) (DnaJ protein Tid-1) (hTid-1) isoform 2
[Canis familiaris].
Length = 480
Score = 68.2 bits (165), Expect = 1e-11
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Frame = +3
Query: 150 SDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVV 329
+ P ++ Y++LGVP A+Q +IK AYY+ + YHPD N +A E+F+++++AY V
Sbjct: 85 TSSPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEV 144
Query: 330 LSSATLRRKYDRGLLSDEDLRGPGVRPSKK------PTADPD 437
LS R++YD + D PG S + PT DP+
Sbjct: 145 LSDEVKRKQYDAYGSAGFD---PGAGSSGQSYWKGGPTVDPE 183
>ref|XP_854953.1| PREDICTED: similar to heat shock 40kD protein 2 [Canis familiaris].
Length = 236
Score = 62.8 bits (151), Expect = 5e-10
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Frame = +3
Query: 99 PQNPGLGL-SLKTRTYSQSDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNS 275
P++P L S TR Q GP + YELLGV A+ ++K A++ +S HPDR+
Sbjct: 11 PRSPSTRLFSAATR---QRSGPRN---YYELLGVHPGASTEEVKRAFFSKSKELHPDRDP 64
Query: 276 GSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPP 455
G+ RF +S+AY VLS RR YD L S + PG + S P
Sbjct: 65 GNPALHSRFVELSEAYQVLSHEHSRRSYDHQLSSTTPPKSPGTTVHPRAAHQAHSSSWAP 124
Query: 456 P 458
P
Sbjct: 125 P 125
>ref|XP_852488.1| PREDICTED: similar to DnaJ homolog subfamily A member 1 (Heat shock
40 kDa protein 4) (DnaJ protein homolog 2) (HSJ-2)
(HSDJ) isoform 2 [Canis familiaris].
Length = 280
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VLS A R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
>ref|XP_865792.1| PREDICTED: similar to DnaJ-like protein 2 isoform 3 [Canis
familiaris].
Length = 170
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VLS A R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
>ref|XP_849937.1| PREDICTED: similar to DnaJ homolog subfamily A member 1 (Heat shock
40 kDa protein 4) (DnaJ protein homolog 2) (HSJ-2)
(HSDJ) isoform 1 [Canis familiaris].
Length = 397
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VLS A R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
>ref|XP_860177.1| PREDICTED: similar to DnaJ-like protein 2 isoform 2 [Canis
familiaris].
Length = 286
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VLS A R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
>ref|XP_531970.1| PREDICTED: similar to DnaJ homolog subfamily A member 1 (Heat shock
40 kDa protein 4) (DnaJ protein homolog 2) (HSJ-2)
(HSDJ) isoform 1 [Canis familiaris].
Length = 397
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VLS A R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,255,047
Number of extensions: 849723
Number of successful extensions: 5524
Number of sequences better than 1.0e-05: 65
Number of HSP's gapped: 5430
Number of HSP's successfully gapped: 65
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013284
(978 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124457.1| PREDICTED: dnaJ homolog subfamily C member 3... 390 e-109
Alignment gi|XP_003354675.1| PREDICTED: dnaJ homolog subfamily A member 3... 66 3e-11
Alignment gi|XP_003354674.1| PREDICTED: dnaJ homolog subfamily A member 3... 66 3e-11
Alignment gi|XP_003130730.1| PREDICTED: dnaJ homolog subfamily A member 1... 62 6e-10
Alignment gi|XP_003122627.2| PREDICTED: dnaJ homolog subfamily C member 4... 61 1e-09
Alignment gi|XP_003360211.1| PREDICTED: dnaJ homolog subfamily B member 9... 60 1e-09
Alignment gi|XP_003134825.1| PREDICTED: dnaJ homolog subfamily B member 9... 60 1e-09
Alignment gi|XP_003133716.2| PREDICTED: dnaJ homolog subfamily B member 2... 60 2e-09
Alignment gi|XP_003362074.1| PREDICTED: dnaJ homolog subfamily C member 5... 60 2e-09
Alignment gi|XP_003358088.1| PREDICTED: dnaJ homolog subfamily C member 7... 57 2e-08
>ref|XP_003124457.1| PREDICTED: dnaJ homolog subfamily C member 30-like [Sus scrofa].
Length = 226
Score = 390 bits (1001), Expect = e-109
Identities = 198/226 (87%), Positives = 198/226 (87%)
Frame = +3
Query: 30 MAAQXXXXXXXXXXXXXWQARGVPQNPGLGLSLKTRTYSQSDGPYSRTALYELLGVPSTA 209
MAAQ WQARGVPQNPGLGLSLKTRTYSQSDGPYSRTALYELLGVPSTA
Sbjct: 1 MAAQRDLRRSRLLLWRLWQARGVPQNPGLGLSLKTRTYSQSDGPYSRTALYELLGVPSTA 60
Query: 210 TQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDL 389
TQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDL
Sbjct: 61 TQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDL 120
Query: 390 RGPGVRPSKKPTADPDSPRTPPPASRAHGRGQASAGASNTMFNFDAFYRAHYGEQXXXXX 569
RGPGVRPSKKPTADPDSPRTPPPASRAHGRGQASAGASNTMFNFDAFYRAHYGEQ
Sbjct: 121 RGPGVRPSKKPTADPDSPRTPPPASRAHGRGQASAGASNTMFNFDAFYRAHYGEQLERER 180
Query: 570 XXXXXXXXXXKQQEDRANKGLRWDEIRDSAFFLFLLTVFIIMSFRF 707
KQQEDRANKGLRWDEIRDSAFFLFLLTVFIIMSFRF
Sbjct: 181 RLRARREALRKQQEDRANKGLRWDEIRDSAFFLFLLTVFIIMSFRF 226
>ref|XP_003354675.1| PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial isoform
2 [Sus scrofa].
Length = 480
Score = 66.2 bits (160), Expect = 3e-11
Identities = 29/66 (43%), Positives = 46/66 (69%)
Frame = +3
Query: 165 SRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSAT 344
S+ Y++LGVP +A+Q +IK AYY+ + YHPD N +A E+F+++++AY VLS
Sbjct: 90 SKEDYYQILGVPRSASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEV 149
Query: 345 LRRKYD 362
R++YD
Sbjct: 150 KRKQYD 155
>ref|XP_003354674.1| PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial isoform
1 [Sus scrofa].
Length = 453
Score = 66.2 bits (160), Expect = 3e-11
Identities = 29/66 (43%), Positives = 46/66 (69%)
Frame = +3
Query: 165 SRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSAT 344
S+ Y++LGVP +A+Q +IK AYY+ + YHPD N +A E+F+++++AY VLS
Sbjct: 90 SKEDYYQILGVPRSASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEV 149
Query: 345 LRRKYD 362
R++YD
Sbjct: 150 KRKQYD 155
>ref|XP_003130730.1| PREDICTED: dnaJ homolog subfamily A member 1 [Sus scrofa].
Length = 397
Score = 61.6 bits (148), Expect = 6e-10
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VLS A R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
>ref|XP_003122627.2| PREDICTED: dnaJ homolog subfamily C member 4-like [Sus scrofa].
Length = 235
Score = 60.8 bits (146), Expect = 1e-09
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = +3
Query: 99 PQNPGLGLSLKTRTYSQSDGPYSRTA-LYELLGVPSTATQAQIKAAYYRQSFLYHPDRNS 275
P+NP R+++ + G S + YELLGV A+ ++K A++ +S HPDR+
Sbjct: 11 PRNP------PARSFAAAAGQRSGPSNYYELLGVHPGASAEEVKRAFFSKSKELHPDRDP 64
Query: 276 GSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDLRGPG 401
G+ RF +S+AY VLS RR YD L S + PG
Sbjct: 65 GNPALHSRFVELSEAYQVLSREESRRSYDHQLRSATSPKSPG 106
>ref|XP_003360211.1| PREDICTED: dnaJ homolog subfamily B member 9-like isoform 2 [Sus
scrofa].
Length = 223
Score = 60.5 bits (145), Expect = 1e-09
Identities = 27/61 (44%), Positives = 43/61 (70%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKY 359
Y++LGVP +A++ QIK A+++ + YHPD+N S +A +F I++AY LS A R++Y
Sbjct: 28 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 86
Query: 360 D 362
D
Sbjct: 87 D 87
>ref|XP_003134825.1| PREDICTED: dnaJ homolog subfamily B member 9-like isoform 1 [Sus
scrofa].
Length = 223
Score = 60.5 bits (145), Expect = 1e-09
Identities = 27/61 (44%), Positives = 43/61 (70%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKY 359
Y++LGVP +A++ QIK A+++ + YHPD+N S +A +F I++AY LS A R++Y
Sbjct: 28 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 86
Query: 360 D 362
D
Sbjct: 87 D 87
>ref|XP_003133716.2| PREDICTED: dnaJ homolog subfamily B member 2-like [Sus scrofa].
Length = 278
Score = 60.1 bits (144), Expect = 2e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAE-RFTRISQAYVVLSSATLRRK 356
YE+L VP +AT IK AY +++ +HPD+N + E AE +F +++AY VLS R
Sbjct: 5 YEILDVPRSATADDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 357 YDRGLLSDEDLRGPGVRPSK 416
YDR E L G G PS+
Sbjct: 65 YDR--YGREGLTGAGTGPSR 82
>ref|XP_003362074.1| PREDICTED: dnaJ homolog subfamily C member 5-like [Sus scrofa].
Length = 185
Score = 59.7 bits (143), Expect = 2e-09
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +3
Query: 165 SRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSAT 344
S +LY +LG+ AT IK +Y + + YHPD+N + EAA++F I+ A+ +L+ AT
Sbjct: 12 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 71
Query: 345 LRRKYDR 365
R YD+
Sbjct: 72 KRNIYDK 78
>ref|XP_003358088.1| PREDICTED: dnaJ homolog subfamily C member 7 isoform 3 [Sus
scrofa].
Length = 438
Score = 56.6 bits (135), Expect = 2e-08
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Frame = +3
Query: 168 RTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSA-----EAAERFTRISQAYVVL 332
R Y++LGV A++ +IK AY +++ ++HPDR+SG++ E ++F + +A+ +L
Sbjct: 323 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTIL 382
Query: 333 SSATLRRKYDRGLLSDED 386
S + +YD G DE+
Sbjct: 383 SDPKKKTRYDSGQDLDEE 400
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,471,592
Number of extensions: 527082
Number of successful extensions: 3533
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 3479
Number of HSP's successfully gapped: 26
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013284
(978 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079638.2| dnaJ homolog subfamily C member 30 [Mus musculu... 260 1e-69
Alignment gi|NP_001128584.1| dnaJ homolog subfamily A member 3, mitochond... 64 1e-10
Alignment gi|NP_076135.3| dnaJ homolog subfamily A member 3, mitochondria... 64 1e-10
Alignment gi|NP_065591.1| dnaJ homolog subfamily C member 4 [Mus musculus]. 62 5e-10
Alignment gi|NP_083420.2| hypothetical protein LOC75015 [Mus musculus]. 62 9e-10
Alignment gi|NP_038788.2| dnaJ homolog subfamily B member 9 [Mus musculus]. 60 2e-09
Alignment gi|NP_058055.1| dnaJ homolog subfamily C member 5 [Mus musculus]. 60 3e-09
Alignment gi|NP_001158144.1| dnaJ homolog subfamily A member 1 [Mus muscu... 59 4e-09
Alignment gi|NP_032324.1| dnaJ homolog subfamily A member 1 [Mus musculus]. 59 4e-09
Alignment gi|NP_001158143.1| dnaJ homolog subfamily A member 1 [Mus muscu... 59 4e-09
>ref|NP_079638.2| dnaJ homolog subfamily C member 30 [Mus musculus].
Length = 219
Score = 260 bits (664), Expect = 1e-69
Identities = 130/208 (62%), Positives = 150/208 (72%)
Frame = +3
Query: 81 WQARGVPQNPGLGLSLKTRTYSQSDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYH 260
WQ RG+P + GL + RTYS RTALYELLGVPSTATQAQIKAAYYRQSFLYH
Sbjct: 18 WQVRGLPPSSATGLCSRGRTYS-------RTALYELLGVPSTATQAQIKAAYYRQSFLYH 70
Query: 261 PDRNSGSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDS 440
PDRN GSAEAAERFTR+S+AY+VL S LRRKYDRGLLSD+DLRGPGV+PSK P ADP
Sbjct: 71 PDRNPGSAEAAERFTRVSEAYLVLGSTILRRKYDRGLLSDQDLRGPGVKPSKTPVADPAP 130
Query: 441 PRTPPPASRAHGRGQASAGASNTMFNFDAFYRAHYGEQXXXXXXXXXXXXXXXKQQEDRA 620
PR PP RA G +AS G TMF+FDAFY+AHYGEQ K+QE++A
Sbjct: 131 PRPPPYTPRAPGGSRASPGDGRTMFDFDAFYQAHYGEQLERERRLRARREALRKKQENQA 190
Query: 621 NKGLRWDEIRDSAFFLFLLTVFIIMSFR 704
NKG WD+ RD+ FF+ L +F+ + FR
Sbjct: 191 NKGTSWDDTRDATFFVVLFLIFVFVGFR 218
>ref|NP_001128584.1| dnaJ homolog subfamily A member 3, mitochondrial isoform 2 [Mus
musculus].
Length = 453
Score = 64.3 bits (155), Expect = 1e-10
Identities = 28/61 (45%), Positives = 42/61 (68%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKY 359
Y++LGVP A+Q IK AYY+ + YHPD N +A E+F+++++AY VLS R++Y
Sbjct: 95 YQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 154
Query: 360 D 362
D
Sbjct: 155 D 155
>ref|NP_076135.3| dnaJ homolog subfamily A member 3, mitochondrial isoform 1 [Mus
musculus].
Length = 480
Score = 64.3 bits (155), Expect = 1e-10
Identities = 28/61 (45%), Positives = 42/61 (68%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKY 359
Y++LGVP A+Q IK AYY+ + YHPD N +A E+F+++++AY VLS R++Y
Sbjct: 95 YQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 154
Query: 360 D 362
D
Sbjct: 155 D 155
>ref|NP_065591.1| dnaJ homolog subfamily C member 4 [Mus musculus].
Length = 244
Score = 62.4 bits (150), Expect = 5e-10
Identities = 42/114 (36%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Frame = +3
Query: 123 SLKTRTYSQSDGPYS-RTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAER 299
SL R + + G S T YELLGV A+ +IK A++ +S HPDR+ G+ R
Sbjct: 19 SLSIRLLTAATGQRSVPTNYYELLGVHPGASAEEIKRAFFTKSKELHPDRDPGNPALHSR 78
Query: 300 FTRISQAYVVLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPPPA 461
F +++AY VLS RR YD L S + G K T S PP A
Sbjct: 79 FVELNEAYRVLSREESRRNYDHQLHSASPPKSSGSTAEPKYTQQTHSSWEPPNA 132
>ref|NP_083420.2| hypothetical protein LOC75015 [Mus musculus].
Length = 234
Score = 61.6 bits (148), Expect = 9e-10
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAA-ERFTRISQAYVVLSSATLRRK 356
Y++LGVP A+ + IK A+++ + HPD+N G EAA E+F ++++AY +LS A R+
Sbjct: 5 YKVLGVPRNASSSDIKRAFHQLALQVHPDKNPGDKEAAEEKFKQVAEAYHILSDAKKRKD 64
Query: 357 YDRGLLSDE--DLRGPG 401
YDR + ++RG G
Sbjct: 65 YDRSRWNRNKGEIRGDG 81
>ref|NP_038788.2| dnaJ homolog subfamily B member 9 [Mus musculus].
Length = 222
Score = 60.5 bits (145), Expect = 2e-09
Identities = 27/61 (44%), Positives = 43/61 (70%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKY 359
Y++LGVP +A++ QIK A+++ + YHPD+N S +A +F I++AY LS A R++Y
Sbjct: 28 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANSRKEY 86
Query: 360 D 362
D
Sbjct: 87 D 87
>ref|NP_058055.1| dnaJ homolog subfamily C member 5 [Mus musculus].
Length = 198
Score = 59.7 bits (143), Expect = 3e-09
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +3
Query: 165 SRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSAT 344
S +LY +LG+ AT IK +Y + + YHPD+N + EAA++F I+ A+ +L+ AT
Sbjct: 12 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 71
Query: 345 LRRKYDR 365
R YD+
Sbjct: 72 KRNIYDK 78
>ref|NP_001158144.1| dnaJ homolog subfamily A member 1 [Mus musculus].
Length = 397
Score = 59.3 bits (142), Expect = 4e-09
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VL+ + R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLADSKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
>ref|NP_032324.1| dnaJ homolog subfamily A member 1 [Mus musculus].
Length = 397
Score = 59.3 bits (142), Expect = 4e-09
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VL+ + R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLADSKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
>ref|NP_001158143.1| dnaJ homolog subfamily A member 1 [Mus musculus].
Length = 397
Score = 59.3 bits (142), Expect = 4e-09
Identities = 29/66 (43%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VL+ + R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLADSKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,178,249
Number of extensions: 673821
Number of successful extensions: 4086
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 4019
Number of HSP's successfully gapped: 41
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013284
(978 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115693.2| dnaJ homolog subfamily C member 30 [Homo sapien... 287 9e-78
Alignment gi|NP_005138.3| dnaJ homolog subfamily A member 3, mitochondria... 69 8e-12
Alignment gi|NP_001128582.1| dnaJ homolog subfamily A member 3, mitochond... 69 8e-12
Alignment gi|NP_005519.2| dnaJ homolog subfamily C member 4 [Homo sapiens]. 64 2e-10
Alignment gi|NP_001530.1| dnaJ homolog subfamily A member 1 [Homo sapiens]. 62 1e-09
Alignment gi|NP_036460.1| dnaJ homolog subfamily B member 9 [Homo sapiens]. 60 2e-09
Alignment gi|NP_079495.1| dnaJ homolog subfamily C member 5 [Homo sapiens]. 60 4e-09
Alignment gi|NP_001034639.1| dnaJ homolog subfamily B member 2 isoform a ... 60 4e-09
Alignment gi|NP_006727.2| dnaJ homolog subfamily B member 2 isoform b [Ho... 60 4e-09
Alignment gi|NP_001001394.1| dnaJ homolog subfamily B member 3 [Homo sapi... 57 3e-08
>ref|NP_115693.2| dnaJ homolog subfamily C member 30 [Homo sapiens].
Length = 226
Score = 287 bits (735), Expect = 9e-78
Identities = 144/206 (69%), Positives = 158/206 (76%)
Frame = +3
Query: 84 QARGVPQNPGLGLSLKTRTYSQSDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHP 263
QARG PQN L L RTYSQ D YSRTALY+LLGVPSTATQAQIKAAYYRQ FLYHP
Sbjct: 19 QARGFPQNSAPSLGLGARTYSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHP 78
Query: 264 DRNSGSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSP 443
DRNSGSAEAAERFTRISQAYVVL SATLRRKYDRGLLSDEDLRGPGVRPS+ P DP SP
Sbjct: 79 DRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLRGPGVRPSRTPAPDPGSP 138
Query: 444 RTPPPASRAHGRGQASAGASNTMFNFDAFYRAHYGEQXXXXXXXXXXXXXXXKQQEDRAN 623
RTPPP SR H +AS GA+ TMFNFDAFY+AHYGEQ K+QE R+
Sbjct: 139 RTPPPTSRTHDGSRASPGANRTMFNFDAFYQAHYGEQLERERRLRARREALRKRQEYRSM 198
Query: 624 KGLRWDEIRDSAFFLFLLTVFIIMSF 701
KGLRW++ RD+A + ++FII+ F
Sbjct: 199 KGLRWEDTRDTAAIFLIFSIFIIIGF 224
>ref|NP_005138.3| dnaJ homolog subfamily A member 3, mitochondrial isoform 1 [Homo
sapiens].
Length = 480
Score = 68.6 bits (166), Expect = 8e-12
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Frame = +3
Query: 150 SDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVV 329
+ P ++ Y++LGVP A+Q +IK AYY+ + YHPD N +A E+F+++++AY V
Sbjct: 85 TSAPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEV 144
Query: 330 LSSATLRRKYDRGLLSDEDLRGPGVRPS---KKPTADPD 437
LS R++YD + D G + S PT DP+
Sbjct: 145 LSDEVKRKQYDAYGSAGFDPGASGSQHSYWKGGPTVDPE 183
>ref|NP_001128582.1| dnaJ homolog subfamily A member 3, mitochondrial isoform 2 [Homo
sapiens].
Length = 453
Score = 68.6 bits (166), Expect = 8e-12
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Frame = +3
Query: 150 SDGPYSRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVV 329
+ P ++ Y++LGVP A+Q +IK AYY+ + YHPD N +A E+F+++++AY V
Sbjct: 85 TSAPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEV 144
Query: 330 LSSATLRRKYDRGLLSDEDLRGPGVRPS---KKPTADPD 437
LS R++YD + D G + S PT DP+
Sbjct: 145 LSDEVKRKQYDAYGSAGFDPGASGSQHSYWKGGPTVDPE 183
>ref|NP_005519.2| dnaJ homolog subfamily C member 4 [Homo sapiens].
Length = 241
Score = 64.3 bits (155), Expect = 2e-10
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Frame = +3
Query: 99 PQNPGLGLSLKTRTYSQSDGPYSR-TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNS 275
P+NP +R + G SR + YELLGV A+ ++K A++ +S HPDR+
Sbjct: 14 PRNP------PSRLLGAAAGQRSRPSTYYELLGVHPGASTEEVKRAFFSKSKELHPDRDP 67
Query: 276 GSAEAAERFTRISQAYVVLSSATLRRKYDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPP 455
G+ RF +S+AY VLS RR YD L S + P K S TPP
Sbjct: 68 GNPSLHSRFVELSEAYRVLSREQSRRSYDDQLRSGSPPKSPRTTVHDKSAHQTHSSWTPP 127
Query: 456 PA 461
A
Sbjct: 128 NA 129
>ref|NP_001530.1| dnaJ homolog subfamily A member 1 [Homo sapiens].
Length = 397
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +3
Query: 171 TALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLR 350
T Y++LGV ATQ ++K AY + + YHPD+N E+F +ISQAY VLS A R
Sbjct: 5 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKR 61
Query: 351 RKYDRG 368
YD+G
Sbjct: 62 ELYDKG 67
>ref|NP_036460.1| dnaJ homolog subfamily B member 9 [Homo sapiens].
Length = 223
Score = 60.5 bits (145), Expect = 2e-09
Identities = 27/61 (44%), Positives = 43/61 (70%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSATLRRKY 359
Y++LGVP +A++ QIK A+++ + YHPD+N S +A +F I++AY LS A R++Y
Sbjct: 28 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 86
Query: 360 D 362
D
Sbjct: 87 D 87
>ref|NP_079495.1| dnaJ homolog subfamily C member 5 [Homo sapiens].
Length = 198
Score = 59.7 bits (143), Expect = 4e-09
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +3
Query: 165 SRTALYELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAERFTRISQAYVVLSSAT 344
S +LY +LG+ AT IK +Y + + YHPD+N + EAA++F I+ A+ +L+ AT
Sbjct: 12 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 71
Query: 345 LRRKYDR 365
R YD+
Sbjct: 72 KRNIYDK 78
>ref|NP_001034639.1| dnaJ homolog subfamily B member 2 isoform a [Homo sapiens].
Length = 277
Score = 59.7 bits (143), Expect = 4e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAE-RFTRISQAYVVLSSATLRRK 356
YE+L VP +A+ IK AY R++ +HPD+N + E AE +F +++AY VLS R
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 357 YDRGLLSDEDLRGPGVRPSK 416
YDR E L G G PS+
Sbjct: 65 YDR--YGREGLTGTGTGPSR 82
>ref|NP_006727.2| dnaJ homolog subfamily B member 2 isoform b [Homo sapiens].
Length = 324
Score = 59.7 bits (143), Expect = 4e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAE-RFTRISQAYVVLSSATLRRK 356
YE+L VP +A+ IK AY R++ +HPD+N + E AE +F +++AY VLS R
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 357 YDRGLLSDEDLRGPGVRPSK 416
YDR E L G G PS+
Sbjct: 65 YDR--YGREGLTGTGTGPSR 82
>ref|NP_001001394.1| dnaJ homolog subfamily B member 3 [Homo sapiens].
Length = 145
Score = 57.0 bits (136), Expect = 3e-08
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +3
Query: 180 YELLGVPSTATQAQIKAAYYRQSFLYHPDRNSGSAEAAE-RFTRISQAYVVLSSATLRRK 356
YE+L VP A+ IK AY + + +HPD+N + E AE RF ++++AY VLS A R
Sbjct: 5 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 64
Query: 357 YDRGLLSDEDLRGPGVRPSKKPTADPDSPRTPPPASRAHGRGQ 485
YDR + + G RP + P S R P R GQ
Sbjct: 65 YDRYGEAGAEGGCTGGRPFEDPFEYVFSFRDPADVFREFFGGQ 107
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,395,647
Number of extensions: 819634
Number of successful extensions: 5190
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 5064
Number of HSP's successfully gapped: 34
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013284
(978 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1459 0.0
Sscrofa_Chr05 62 6e-07
>Sscrofa_Chr03
|| Length = 144787322
Score = 1459 bits (736), Expect = 0.0
Identities = 736/736 (100%)
Strand = Plus / Minus
Query: 1 ttttgcaccgcccgcctgattcattcaagatggcagcccagcgcgatctgaggaggtcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10656059 ttttgcaccgcccgcctgattcattcaagatggcagcccagcgcgatctgaggaggtcgc 10656000
Query: 61 ggttgcttctgtggaggttgtggcaggctcgaggggttccacaaaacccgggactcggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655999 ggttgcttctgtggaggttgtggcaggctcgaggggttccacaaaacccgggactcggcc 10655940
Query: 121 tgagcctaaaaactagaacttattcccagagcgacggcccgtactcgcgtacggcgctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655939 tgagcctaaaaactagaacttattcccagagcgacggcccgtactcgcgtacggcgctct 10655880
Query: 181 atgagctgctcggcgtcccttccacggccacgcaggcgcagatcaaggcggcctactacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655879 atgagctgctcggcgtcccttccacggccacgcaggcgcagatcaaggcggcctactacc 10655820
Query: 241 ggcagagcttcctctaccacccggaccgcaactccgggagtgctgaggccgccgagcgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655819 ggcagagcttcctctaccacccggaccgcaactccgggagtgctgaggccgccgagcgct 10655760
Query: 301 tcacgcgcatctctcaggcgtacgtggtgctgagcagtgctaccctgcgtcgcaaatatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655759 tcacgcgcatctctcaggcgtacgtggtgctgagcagtgctaccctgcgtcgcaaatatg 10655700
Query: 361 accgaggtctgctcagcgacgaggacttgcgcggccccggcgtccggccctccaagaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655699 accgaggtctgctcagcgacgaggacttgcgcggccccggcgtccggccctccaagaagc 10655640
Query: 421 ccaccgctgaccccgactcgccccgcaccccaccgcctgcttctcgggcccacggccgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655639 ccaccgctgaccccgactcgccccgcaccccaccgcctgcttctcgggcccacggccgtg 10655580
Query: 481 gtcaggcctcagcgggcgccagcaacaccatgttcaactttgacgccttctaccgggcgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655579 gtcaggcctcagcgggcgccagcaacaccatgttcaactttgacgccttctaccgggcgc 10655520
Query: 541 actacggcgagcagctggagcgcgagcggcgccttagggcccggagggaggcccttcgca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655519 actacggcgagcagctggagcgcgagcggcgccttagggcccggagggaggcccttcgca 10655460
Query: 601 agcagcaggaggaccgcgccaataagggcttacgctgggatgagatccgagactcggctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655459 agcagcaggaggaccgcgccaataagggcttacgctgggatgagatccgagactcggctt 10655400
Query: 661 ttttcttgtttctgctcacagtcttcatcatcatgagttttcgtttttaattggagagtg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655399 ttttcttgtttctgctcacagtcttcatcatcatgagttttcgtttttaattggagagtg 10655340
Query: 721 gagggaaggggagcag 736
||||||||||||||||
Sbjct: 10655339 gagggaaggggagcag 10655324
Score = 335 bits (169), Expect = 3e-89
Identities = 208/217 (95%), Gaps = 3/217 (1%)
Strand = Plus / Minus
Query: 764 agaaaatggctgtgcgtgtcatcttgaactcattgccctccattgtctacctctcctggg 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655296 agaaaatggctgtgcgtgtcatcttgaactcattgccctccattgtctacctctcctggg 10655237
Query: 824 gtccgaagaattgctctcccccctcttcgtccccacccgtccagtttaaccactgatctt 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10655236 gtccgaagaattgctctcccccctcttcgtccccacccgtccagtttaaccactgatctt 10655177
Query: 884 cacatccctatccctctggtccaaataa-gaggcttggtgctgccccaaaaagaaggcct 942
||||||||||||||||||||||| |||| |||||||| |||||||| | |||| ||||||
Sbjct: 10655176 cacatccctatccctctggtccagataaggaggcttgttgctgcccaagaaag-aggcct 10655118
Query: 943 cc-atgaagagtcccgaaagtccgaaagcgaaaggtt 978
|| |||||||||||||||||||||| ||||| |||||
Sbjct: 10655117 ccaatgaagagtcccgaaagtccgagagcgagaggtt 10655081
>Sscrofa_Chr05
|| Length = 111506441
Score = 61.9 bits (31), Expect = 6e-07
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 634 gctgggatgagatccgagactcggcttttttcttgtttctgctcacagtcttcatcatca 693
||||||| ||||||| |||| |||||| |||| ||||||||||||||| ||||||||
Sbjct: 66726291 gctgggacgagatccaagacatggctttcgtcttcattctgctcacagtctccatcatca 66726350
Query: 694 tgagttttcgtttttaattggagagtggagg 724
|| | ||||| |||||| || |||| |||||
Sbjct: 66726351 tgggctttcggttttaactgcagaggggagg 66726381
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,154,205
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 3
Length of query: 978
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 957
Effective length of database: 2,808,413,156
Effective search space: 2687651390292
Effective search space used: 2687651390292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)