Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013288
(1164 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193563.1| glucocorticoid receptor [Bos taurus]. 245 6e-65
>ref|NP_001193563.1| glucocorticoid receptor [Bos taurus].
Length = 781
Score = 245 bits (625), Expect = 6e-65
Identities = 145/241 (60%), Positives = 158/241 (65%), Gaps = 10/241 (4%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MDPKESL+ PSREEIPSSVLGRER +VMDFYK+LRGG DSKQQ
Sbjct: 1 MDPKESLSTPSREEIPSSVLGRERGNVMDFYKTLRGGATVKVSASSPSLAAASQSDSKQQ 60
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETDF
Sbjct: 61 RLLVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDF 120
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPK---------PTLMGLQSSRM* 978
RLLEESIANL+RSTSVPENPK FPK L G + S
Sbjct: 121 RLLEESIANLNRSTSVPENPKNSASTAVSAAPTEKEFPKTHSDVSSEQQNLKGQKGSNGG 180
Query: 979 RVRLAPTGVT*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSP 1155
++L T + + + K SGSP KETSESPW+SDLLI E + SP
Sbjct: 181 NMKLYTTDQSTFDIWRKK--------LQDLEFSSGSPSKETSESPWSSDLLIDENCLLSP 232
Query: 1156 L 1158
L
Sbjct: 233 L 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,400,841
Number of extensions: 1210639
Number of successful extensions: 3459
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3454
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-013288
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013288
(1164 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535225.2| PREDICTED: similar to Glucocorticoid receptor (... 226 2e-59
>ref|XP_535225.2| PREDICTED: similar to Glucocorticoid receptor (GR) [Canis
familiaris].
Length = 780
Score = 226 bits (577), Expect = 2e-59
Identities = 138/240 (57%), Positives = 152/240 (63%), Gaps = 9/240 (3%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESL+PPS+EEI SSVLGRER +VMDFYK+LRGG DSKQQ
Sbjct: 1 MDSKESLSPPSKEEISSSVLGRERGNVMDFYKTLRGGATVKVSASSPSLAAASQSDSKQQ 60
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGSGS+AQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETDF
Sbjct: 61 RLLVDFPKGSGSHAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDF 120
Query: 826 RLLEESIANLSRSTSVPENPK--------XXXXXXXXXXXXXXXFPKPTLMGLQSSRM*R 981
RLLEESIANL+RSTSVPENPK + L G +
Sbjct: 121 RLLEESIANLNRSTSVPENPKSSVSAVSAAPTEKEFAQTLSDVSSEQQHLKGQTGTNGGN 180
Query: 982 VRLAPTGVT*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSPL 1158
V+L T + + + K SGSP KE SESPW SDLLI E + SPL
Sbjct: 181 VKLYTTDQSTFDVWRKK--------LQDLDFTSGSPEKEASESPWRSDLLIDENCLLSPL 232
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,766,468
Number of extensions: 1164290
Number of successful extensions: 3593
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3587
Number of HSP's successfully gapped: 3
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013288
(1164 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008481.1| glucocorticoid receptor [Sus scrofa]. 268 6e-72
>ref|NP_001008481.1| glucocorticoid receptor [Sus scrofa].
Length = 782
Score = 268 bits (684), Expect = 6e-72
Identities = 156/241 (64%), Positives = 164/241 (68%), Gaps = 10/241 (4%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGT DSKQQ
Sbjct: 1 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTPVKVSAASPSLAAVSQPDSKQQ 60
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF
Sbjct: 61 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 120
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPK---------PTLMGLQSSRM* 978
RLLEESIANLSRSTSVPENPK FPK P + G +
Sbjct: 121 RLLEESIANLSRSTSVPENPKSSASAAGPAAPAEKAFPKTHSDGAPEQPNVKGQTGTNGG 180
Query: 979 RVRLAPTGVT*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSP 1155
V+L T + + + K PSGSPGKETSESPW+SDLLI E + SP
Sbjct: 181 NVKLFTTDQSTFDIWRKK--------LQDLELPSGSPGKETSESPWSSDLLIDENCLLSP 232
Query: 1156 L 1158
L
Sbjct: 233 L 233
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,511,386
Number of extensions: 898832
Number of successful extensions: 2241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2235
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013288
(1164 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032199.3| glucocorticoid receptor [Mus musculus]. 212 5e-55
>ref|NP_032199.3| glucocorticoid receptor [Mus musculus].
Length = 792
Score = 212 bits (539), Expect = 5e-55
Identities = 125/248 (50%), Positives = 144/248 (58%), Gaps = 17/248 (6%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESL PP R+E+PSS+LGR R VMD YK+LRGG DSKQQ
Sbjct: 1 MDSKESLAPPGRDEVPSSLLGRGRGSVMDLYKTLRGGATVKVSASSPSVAAASQADSKQQ 60
Query: 646 RLAVDFPKGSGSNAQQ-----------------PDLSKAVSLSMGLYMGETETKVMGSDL 774
R+ +DF KGS SNAQQ PDLSKAVSLSMGLYMGETETKVMG+DL
Sbjct: 61 RILLDFSKGSASNAQQQQQQQQQQQQQQQQQPQPDLSKAVSLSMGLYMGETETKVMGNDL 120
Query: 775 GFPQQGQISLSSGETDFRLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKPTLM 954
G+PQQGQ+ LSSGETDFRLLEESIANL+RSTS PENPK FP+
Sbjct: 121 GYPQQGQLGLSSGETDFRLLEESIANLNRSTSRPENPKSSTPAAGCATPTEKEFPQ---T 177
Query: 955 GLQSSRM*RVRLAPTGVT*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI 1134
S + R + G + +GSPGKET+ESPW SDLLI
Sbjct: 178 HSDPSSEQQNRKSQPGTNGGSVKLYTTDQSTFDILQDLEFSAGSPGKETNESPWRSDLLI 237
Query: 1135 EKTVCSPL 1158
++ + SPL
Sbjct: 238 DENLLSPL 245
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,196,151
Number of extensions: 940719
Number of successful extensions: 2839
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2831
Number of HSP's successfully gapped: 3
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013288
(1164 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018661.1| glucocorticoid receptor isoform beta [Homo s... 222 6e-58
Alignment gi|NP_001018087.1| glucocorticoid receptor isoform alpha [Homo ... 222 6e-58
Alignment gi|NP_001018086.1| glucocorticoid receptor isoform alpha [Homo ... 222 6e-58
Alignment gi|NP_001018085.1| glucocorticoid receptor isoform alpha [Homo ... 222 6e-58
Alignment gi|NP_001018084.1| glucocorticoid receptor isoform alpha [Homo ... 222 6e-58
Alignment gi|NP_000167.1| glucocorticoid receptor isoform alpha [Homo sap... 222 6e-58
Alignment gi|NP_001191194.1| glucocorticoid receptor isoform GR-P [Homo s... 222 6e-58
Alignment gi|NP_001019265.1| glucocorticoid receptor isoform gamma [Homo ... 222 6e-58
Alignment gi|NP_001191187.1| glucocorticoid receptor isoform alpha-B [Hom... 192 5e-49
Alignment gi|NP_001191188.1| glucocorticoid receptor isoform alpha-C1 [Ho... 127 2e-29
>ref|NP_001018661.1| glucocorticoid receptor isoform beta [Homo sapiens].
Length = 742
Score = 222 bits (565), Expect = 6e-58
Identities = 135/232 (58%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGV 1005
+LLEESIANL+RSTSVPENPK FPK T + S + + TG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGT 176
Query: 1006 T*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSPL 1158
+ SGSPGKET+ESPW SDLLI E + SPL
Sbjct: 177 NGGNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPL 228
>ref|NP_001018087.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 222 bits (565), Expect = 6e-58
Identities = 135/232 (58%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGV 1005
+LLEESIANL+RSTSVPENPK FPK T + S + + TG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGT 176
Query: 1006 T*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSPL 1158
+ SGSPGKET+ESPW SDLLI E + SPL
Sbjct: 177 NGGNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPL 228
>ref|NP_001018086.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 222 bits (565), Expect = 6e-58
Identities = 135/232 (58%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGV 1005
+LLEESIANL+RSTSVPENPK FPK T + S + + TG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGT 176
Query: 1006 T*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSPL 1158
+ SGSPGKET+ESPW SDLLI E + SPL
Sbjct: 177 NGGNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPL 228
>ref|NP_001018085.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 222 bits (565), Expect = 6e-58
Identities = 135/232 (58%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGV 1005
+LLEESIANL+RSTSVPENPK FPK T + S + + TG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGT 176
Query: 1006 T*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSPL 1158
+ SGSPGKET+ESPW SDLLI E + SPL
Sbjct: 177 NGGNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPL 228
>ref|NP_001018084.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 222 bits (565), Expect = 6e-58
Identities = 135/232 (58%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGV 1005
+LLEESIANL+RSTSVPENPK FPK T + S + + TG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGT 176
Query: 1006 T*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSPL 1158
+ SGSPGKET+ESPW SDLLI E + SPL
Sbjct: 177 NGGNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPL 228
>ref|NP_000167.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 222 bits (565), Expect = 6e-58
Identities = 135/232 (58%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGV 1005
+LLEESIANL+RSTSVPENPK FPK T + S + + TG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGT 176
Query: 1006 T*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSPL 1158
+ SGSPGKET+ESPW SDLLI E + SPL
Sbjct: 177 NGGNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPL 228
>ref|NP_001191194.1| glucocorticoid receptor isoform GR-P [Homo sapiens].
Length = 676
Score = 222 bits (565), Expect = 6e-58
Identities = 135/232 (58%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGV 1005
+LLEESIANL+RSTSVPENPK FPK T + S + + TG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGT 176
Query: 1006 T*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSPL 1158
+ SGSPGKET+ESPW SDLLI E + SPL
Sbjct: 177 NGGNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPL 228
>ref|NP_001019265.1| glucocorticoid receptor isoform gamma [Homo sapiens].
Length = 778
Score = 222 bits (565), Expect = 6e-58
Identities = 135/232 (58%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Frame = +1
Query: 466 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 645
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 646 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 825
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 826 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGV 1005
+LLEESIANL+RSTSVPENPK FPK T + S + + TG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGT 176
Query: 1006 T*SCLPQTKHXXXXXXXXXXXXXPSGSPGKETSESPWNSDLLI-EKTVCSPL 1158
+ SGSPGKET+ESPW SDLLI E + SPL
Sbjct: 177 NGGNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPL 228
>ref|NP_001191187.1| glucocorticoid receptor isoform alpha-B [Homo sapiens].
Length = 751
Score = 192 bits (488), Expect = 5e-49
Identities = 116/205 (56%), Positives = 127/205 (61%), Gaps = 1/205 (0%)
Frame = +1
Query: 547 MDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQRLAVDFPKGSGSNAQQPDLSKAVSLSM 726
MDFYK+LRGG DSKQ+RL VDFPKGS SNAQQPDLSKAVSLSM
Sbjct: 1 MDFYKTLRGGATVKVSASSPSLAVASQSDSKQRRLLVDFPKGSVSNAQQPDLSKAVSLSM 60
Query: 727 GLYMGETETKVMGSDLGFPQQGQISLSSGETDFRLLEESIANLSRSTSVPENPKXXXXXX 906
GLYMGETETKVMG+DLGFPQQGQISLSSGETD +LLEESIANL+RSTSVPENPK
Sbjct: 61 GLYMGETETKVMGNDLGFPQQGQISLSSGETDLKLLEESIANLNRSTSVPENPKSSASTA 120
Query: 907 XXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGVT*SCLPQTKHXXXXXXXXXXXXXPSGS 1086
FPK T + S + + TG + SGS
Sbjct: 121 VSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGTNGGNVKLYTTDQSTFDILQDLEFSSGS 177
Query: 1087 PGKETSESPWNSDLLI-EKTVCSPL 1158
PGKET+ESPW SDLLI E + SPL
Sbjct: 178 PGKETNESPWRSDLLIDENCLLSPL 202
>ref|NP_001191188.1| glucocorticoid receptor isoform alpha-C1 [Homo sapiens].
Length = 692
Score = 127 bits (320), Expect = 2e-29
Identities = 79/146 (54%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Frame = +1
Query: 724 MGLYMGETETKVMGSDLGFPQQGQISLSSGETDFRLLEESIANLSRSTSVPENPKXXXXX 903
MGLYMGETETKVMG+DLGFPQQGQISLSSGETD +LLEESIANL+RSTSVPENPK
Sbjct: 1 MGLYMGETETKVMGNDLGFPQQGQISLSSGETDLKLLEESIANLNRSTSVPENPKSSAST 60
Query: 904 XXXXXXXXXXFPKPTLMGLQSSRM*RVRLAPTGVT*SCLPQTKHXXXXXXXXXXXXXPSG 1083
FPK T + S + + TG + SG
Sbjct: 61 AVSAAPTEKEFPK-THSDVSSEQ--QHLKGQTGTNGGNVKLYTTDQSTFDILQDLEFSSG 117
Query: 1084 SPGKETSESPWNSDLLI-EKTVCSPL 1158
SPGKET+ESPW SDLLI E + SPL
Sbjct: 118 SPGKETNESPWRSDLLIDENCLLSPL 143
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,764,800
Number of extensions: 1133706
Number of successful extensions: 3494
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3477
Number of HSP's successfully gapped: 36
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013288
(1164 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1273 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1273 bits (642), Expect = 0.0
Identities = 701/718 (97%), Gaps = 4/718 (0%)
Strand = Plus / Minus
Query: 451 agctgatacccactgatggaccccaaggaatcgctgannnnnnnnagcagagaagaaatc 510
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 151155865 agctgatacccactgatggaccccaaggaatcgctgaccccccccagcagagaagaaatc 151155806
Query: 511 cccagcagcgtgcttggccgggagagagcccatgtgatggacttctataaaagcctgagg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155805 cccagcagcgtgcttggccgggagagagcccatgtgatggacttctataaaagcctgagg 151155746
Query: 571 ggaggaactcctgtgaaggtttctgcagcttcaccctccctggctgctgtgtctcagcca 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155745 ggaggaactcctgtgaaggtttctgcagcttcaccctccctggctgctgtgtctcagcca 151155686
Query: 631 gactccaagcagcagaggcttgcggtggactttccaaaaggctcaggaagcaatgcacag 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155685 gactccaagcagcagaggcttgcggtggactttccaaaaggctcaggaagcaatgcacag 151155626
Query: 691 cagccagatctgtccaaggcagtttcactctccatgggactgtacatgggagagaccgaa 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155625 cagccagatctgtccaaggcagtttcactctccatgggactgtacatgggagagaccgaa 151155566
Query: 751 actaaagtgatgggaagtgacctgggattcccacagcagggccaaatcagcctttcctct 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155565 actaaagtgatgggaagtgacctgggattcccacagcagggccaaatcagcctttcctct 151155506
Query: 811 ggggagacagacttccggcttctggaagaaagcatcgcaaacctcagtaggtcgaccagt 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155505 ggggagacagacttccggcttctggaagaaagcatcgcaaacctcagtaggtcgaccagt 151155446
Query: 871 gttccagagaaccccaagagttcagcctccgctgctggttctgctgctccggcagagaag 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155445 gttccagagaaccccaagagttcagcctccgctgctggttctgctgctccggcagagaag 151155386
Query: 931 gcgtttcc-aaaacccactctgatggggctccagagcagccgaatgtgaagggtcagact 989
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155385 gcgtttccaaaaacccactctgatggggctccagagcagccgaatgtgaagggtcagact 151155326
Query: 990 ggcaccaacgggggtaacgtgaagttgtttaccacaga-caaagcacctttgacatttgg 1048
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 151155325 ggcaccaacgggggtaacgtgaagttgtttaccacagaccaaagcacctttgacatttgg 151155266
Query: 1049 aggaag-aactccaggatttggagcttccttctgggtctcccggtaaagagacaagtgaa 1107
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 151155265 aggaagaaactccaggatttggagcttccttctgggtctccaggtaaagagacaagtgag 151155206
Query: 1108 agtccctggaactcggacctcttgatcga-gaaaacggtttgctctccccttgggcag 1164
|||||||||| |||||||||||||||||| |||||| ||||||||||||||| |||||
Sbjct: 151155205 agtccctggagctcggacctcttgatcgatgaaaactgtttgctctcccctttggcag 151155148
Score = 280 bits (141), Expect = 2e-72
Identities = 179/198 (90%)
Strand = Plus / Minus
Query: 255 ttgtcagcggggaaatgggggactttcttcgctaggggccctcccctccccccatggaga 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151158407 ttgtcagcggggaaatgggggactttcttcgctaggggccctcccctccccccatggaga 151158348
Query: 315 agggggcggctgtttacttccnnnnnnnnnaagnnnnnnnnnntcgctcccgctcctcct 374
||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 151158347 agggggcggctgtttacttcctttttttttaagaaaaaaaaaatcgctcccgctcctcct 151158288
Query: 375 gctttcacacgctaagttgtttatctcggctgcggtgggagccgcggacggcggcggtga 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151158287 gctttcacacgctaagttgtttatctcggctgcggtgggagccgcggacggcggcggtga 151158228
Query: 435 gcggcgccgcgggcagag 452
||||||||||||||||||
Sbjct: 151158227 gcggcgccgcgggcagag 151158210
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 83 attttgcgagctcgagtctgtgacgggagcccgagtcaccgcccgcccgtcggggacggg 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151158579 attttgcgagctcgagtctgtgacgggagcccgagtcaccgcccgcccgtcggggacggg 151158520
Query: 143 ttctcgtgggtggaaggagccgccgcggctggagcggctgga 184
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151158519 ttctcgtgggtggaaggagccgccgcggctggagcggctgga 151158478
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 1 gctcggtcccgcttgctcgccgcggccgggcggccctttcgcgtgtccgcgct 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151158661 gctcggtcccgcttgctcgccgcggccgggcggccctttcgcgtgtccgcgct 151158609
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,680,898
Number of extensions: 189
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 6
Length of query: 1164
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1143
Effective length of database: 2,808,413,156
Effective search space: 3210016237308
Effective search space used: 3210016237308
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)