Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013289
(994 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193563.1| glucocorticoid receptor [Bos taurus]. 429 e-120
>ref|NP_001193563.1| glucocorticoid receptor [Bos taurus].
Length = 781
Score = 429 bits (1103), Expect = e-120
Identities = 221/293 (75%), Positives = 234/293 (79%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MDPKESL+ PSREEIPSSVLGRER +VMDFYK+LRGG DSKQQ
Sbjct: 1 MDPKESLSTPSREEIPSSVLGRERGNVMDFYKTLRGGATVKVSASSPSLAAASQSDSKQQ 60
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETDF
Sbjct: 61 RLLVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDF 120
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
RLLEESIANL+RSTSVPENPK FPKTHSD + EQ N+KGQ G+NGG
Sbjct: 121 RLLEESIANLNRSTSVPENPKNSASTAVSAAPTEKEFPKTHSDVSSEQQNLKGQKGSNGG 180
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
N+KL+TTDQSTFDIWRKKLQDLE SGSP KETSESPWSSDLLIDENCLLSPLAGE+DPF
Sbjct: 181 NMKLYTTDQSTFDIWRKKLQDLEFSSGSPSKETSESPWSSDLLIDENCLLSPLAGEDDPF 240
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEGSS ED PLVLPDTKP +KDNG+LI KTEKEDFIELCT
Sbjct: 241 LLEGSSNEDCKPLVLPDTKPKIKDNGDLILPSPSSVPLPQVKTEKEDFIELCT 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,789,950
Number of extensions: 1177435
Number of successful extensions: 3832
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3829
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013289
(994 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535225.2| PREDICTED: similar to Glucocorticoid receptor (... 405 e-113
>ref|XP_535225.2| PREDICTED: similar to Glucocorticoid receptor (GR) [Canis
familiaris].
Length = 780
Score = 405 bits (1042), Expect = e-113
Identities = 212/293 (72%), Positives = 230/293 (78%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESL+PPS+EEI SSVLGRER +VMDFYK+LRGG DSKQQ
Sbjct: 1 MDSKESLSPPSKEEISSSVLGRERGNVMDFYKTLRGGATVKVSASSPSLAAASQSDSKQQ 60
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGSGS+AQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETDF
Sbjct: 61 RLLVDFPKGSGSHAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDF 120
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
RLLEESIANL+RSTSVPENPK F +T SD + EQ ++KGQTGTNGG
Sbjct: 121 RLLEESIANLNRSTSVPENPKSSVSAVSAAPTEKE-FAQTLSDVSSEQQHLKGQTGTNGG 179
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKL+TTDQSTFD+WRKKLQDL+ SGSP KE SESPW SDLLIDENCLLSPLAGE+DPF
Sbjct: 180 NVKLYTTDQSTFDVWRKKLQDLDFTSGSPEKEASESPWRSDLLIDENCLLSPLAGEDDPF 239
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEG+S ED PLVLPDTKP +KDNG+LI KTEKEDFIELCT
Sbjct: 240 LLEGNSNEDCKPLVLPDTKPKIKDNGDLILASPNSVPLPQVKTEKEDFIELCT 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,500,167
Number of extensions: 1207436
Number of successful extensions: 3979
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3975
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013289
(994 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008481.1| glucocorticoid receptor [Sus scrofa]. 475 e-134
>ref|NP_001008481.1| glucocorticoid receptor [Sus scrofa].
Length = 782
Score = 475 bits (1222), Expect = e-134
Identities = 246/293 (83%), Positives = 246/293 (83%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGT DSKQQ
Sbjct: 1 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTPVKVSAASPSLAAVSQPDSKQQ 60
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF
Sbjct: 61 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 120
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
RLLEESIANLSRSTSVPENPK FPKTHSDGAPEQPNVKGQTGTNGG
Sbjct: 121 RLLEESIANLSRSTSVPENPKSSASAAGPAAPAEKAFPKTHSDGAPEQPNVKGQTGTNGG 180
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF
Sbjct: 181 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 240
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEGSSTED PLVLPDTKP VKDNGELI KTEKEDFIELCT
Sbjct: 241 LLEGSSTEDCKPLVLPDTKPKVKDNGELILPSPNSVPLPQVKTEKEDFIELCT 293
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,300,259
Number of extensions: 756312
Number of successful extensions: 2522
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2519
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013289
(994 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032199.3| glucocorticoid receptor [Mus musculus]. 353 1e-97
>ref|NP_032199.3| glucocorticoid receptor [Mus musculus].
Length = 792
Score = 353 bits (906), Expect = 1e-97
Identities = 192/310 (61%), Positives = 214/310 (69%), Gaps = 17/310 (5%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESL PP R+E+PSS+LGR R VMD YK+LRGG DSKQQ
Sbjct: 1 MDSKESLAPPGRDEVPSSLLGRGRGSVMDLYKTLRGGATVKVSASSPSVAAASQADSKQQ 60
Query: 295 RLAVDFPKGSGSNAQQ-----------------PDLSKAVSLSMGLYMGETETKVMGSDL 423
R+ +DF KGS SNAQQ PDLSKAVSLSMGLYMGETETKVMG+DL
Sbjct: 61 RILLDFSKGSASNAQQQQQQQQQQQQQQQQQPQPDLSKAVSLSMGLYMGETETKVMGNDL 120
Query: 424 GFPQQGQISLSSGETDFRLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSD 603
G+PQQGQ+ LSSGETDFRLLEESIANL+RSTS PENPK FP+THSD
Sbjct: 121 GYPQQGQLGLSSGETDFRLLEESIANLNRSTSRPENPKSSTPAAGCATPTEKEFPQTHSD 180
Query: 604 GAPEQPNVKGQTGTNGGNVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLL 783
+ EQ N K Q GTNGG+VKL+TTDQSTFDI LQDLE +GSPGKET+ESPW SDLL
Sbjct: 181 PSSEQQNRKSQPGTNGGSVKLYTTDQSTFDI----LQDLEFSAGSPGKETNESPWRSDLL 236
Query: 784 IDENCLLSPLAGEEDPFLLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKT 963
IDEN LLSPLAGE+DPFLLEG ED PL+LPDTKP ++D G+ I KT
Sbjct: 237 IDEN-LLSPLAGEDDPFLLEGDVNEDCKPLILPDTKPKIQDTGDTILSSPSSVALPQVKT 295
Query: 964 EKEDFIELCT 993
EK+DFIELCT
Sbjct: 296 EKDDFIELCT 305
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,327,882
Number of extensions: 997031
Number of successful extensions: 3246
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3237
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013289
(994 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018661.1| glucocorticoid receptor isoform beta [Homo s... 387 e-108
Alignment gi|NP_001018087.1| glucocorticoid receptor isoform alpha [Homo ... 387 e-108
Alignment gi|NP_001018086.1| glucocorticoid receptor isoform alpha [Homo ... 387 e-108
Alignment gi|NP_001018085.1| glucocorticoid receptor isoform alpha [Homo ... 387 e-108
Alignment gi|NP_001018084.1| glucocorticoid receptor isoform alpha [Homo ... 387 e-108
Alignment gi|NP_000167.1| glucocorticoid receptor isoform alpha [Homo sap... 387 e-108
Alignment gi|NP_001191194.1| glucocorticoid receptor isoform GR-P [Homo s... 387 e-108
Alignment gi|NP_001019265.1| glucocorticoid receptor isoform gamma [Homo ... 387 e-108
Alignment gi|NP_001191187.1| glucocorticoid receptor isoform alpha-B [Hom... 358 6e-99
Alignment gi|NP_001191188.1| glucocorticoid receptor isoform alpha-C1 [Ho... 293 2e-79
>ref|NP_001018661.1| glucocorticoid receptor isoform beta [Homo sapiens].
Length = 742
Score = 387 bits (995), Expect = e-108
Identities = 206/293 (70%), Positives = 223/293 (76%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
+LLEESIANL+RSTSVPENPK FPKTHSD + EQ ++KGQTGTNGG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGG 179
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKL+TTDQSTFDI LQDLE SGSPGKET+ESPW SDLLIDENCLLSPLAGE+D F
Sbjct: 180 NVKLYTTDQSTFDI----LQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSF 235
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEG+S ED PL+LPDTKP +KDNG+L+ KTEKEDFIELCT
Sbjct: 236 LLEGNSNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCT 288
>ref|NP_001018087.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 387 bits (995), Expect = e-108
Identities = 206/293 (70%), Positives = 223/293 (76%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
+LLEESIANL+RSTSVPENPK FPKTHSD + EQ ++KGQTGTNGG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGG 179
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKL+TTDQSTFDI LQDLE SGSPGKET+ESPW SDLLIDENCLLSPLAGE+D F
Sbjct: 180 NVKLYTTDQSTFDI----LQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSF 235
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEG+S ED PL+LPDTKP +KDNG+L+ KTEKEDFIELCT
Sbjct: 236 LLEGNSNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCT 288
>ref|NP_001018086.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 387 bits (995), Expect = e-108
Identities = 206/293 (70%), Positives = 223/293 (76%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
+LLEESIANL+RSTSVPENPK FPKTHSD + EQ ++KGQTGTNGG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGG 179
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKL+TTDQSTFDI LQDLE SGSPGKET+ESPW SDLLIDENCLLSPLAGE+D F
Sbjct: 180 NVKLYTTDQSTFDI----LQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSF 235
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEG+S ED PL+LPDTKP +KDNG+L+ KTEKEDFIELCT
Sbjct: 236 LLEGNSNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCT 288
>ref|NP_001018085.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 387 bits (995), Expect = e-108
Identities = 206/293 (70%), Positives = 223/293 (76%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
+LLEESIANL+RSTSVPENPK FPKTHSD + EQ ++KGQTGTNGG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGG 179
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKL+TTDQSTFDI LQDLE SGSPGKET+ESPW SDLLIDENCLLSPLAGE+D F
Sbjct: 180 NVKLYTTDQSTFDI----LQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSF 235
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEG+S ED PL+LPDTKP +KDNG+L+ KTEKEDFIELCT
Sbjct: 236 LLEGNSNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCT 288
>ref|NP_001018084.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 387 bits (995), Expect = e-108
Identities = 206/293 (70%), Positives = 223/293 (76%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
+LLEESIANL+RSTSVPENPK FPKTHSD + EQ ++KGQTGTNGG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGG 179
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKL+TTDQSTFDI LQDLE SGSPGKET+ESPW SDLLIDENCLLSPLAGE+D F
Sbjct: 180 NVKLYTTDQSTFDI----LQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSF 235
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEG+S ED PL+LPDTKP +KDNG+L+ KTEKEDFIELCT
Sbjct: 236 LLEGNSNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCT 288
>ref|NP_000167.1| glucocorticoid receptor isoform alpha [Homo sapiens].
Length = 777
Score = 387 bits (995), Expect = e-108
Identities = 206/293 (70%), Positives = 223/293 (76%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
+LLEESIANL+RSTSVPENPK FPKTHSD + EQ ++KGQTGTNGG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGG 179
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKL+TTDQSTFDI LQDLE SGSPGKET+ESPW SDLLIDENCLLSPLAGE+D F
Sbjct: 180 NVKLYTTDQSTFDI----LQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSF 235
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEG+S ED PL+LPDTKP +KDNG+L+ KTEKEDFIELCT
Sbjct: 236 LLEGNSNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCT 288
>ref|NP_001191194.1| glucocorticoid receptor isoform GR-P [Homo sapiens].
Length = 676
Score = 387 bits (995), Expect = e-108
Identities = 206/293 (70%), Positives = 223/293 (76%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
+LLEESIANL+RSTSVPENPK FPKTHSD + EQ ++KGQTGTNGG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGG 179
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKL+TTDQSTFDI LQDLE SGSPGKET+ESPW SDLLIDENCLLSPLAGE+D F
Sbjct: 180 NVKLYTTDQSTFDI----LQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSF 235
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEG+S ED PL+LPDTKP +KDNG+L+ KTEKEDFIELCT
Sbjct: 236 LLEGNSNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCT 288
>ref|NP_001019265.1| glucocorticoid receptor isoform gamma [Homo sapiens].
Length = 778
Score = 387 bits (995), Expect = e-108
Identities = 206/293 (70%), Positives = 223/293 (76%)
Frame = +1
Query: 115 MDPKESLTPPSREEIPSSVLGRERAHVMDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQ 294
MD KESLTP REE PSSVL +ER VMDFYK+LRGG DSKQ+
Sbjct: 1 MDSKESLTP-GREENPSSVLAQERGDVMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR 59
Query: 295 RLAVDFPKGSGSNAQQPDLSKAVSLSMGLYMGETETKVMGSDLGFPQQGQISLSSGETDF 474
RL VDFPKGS SNAQQPDLSKAVSLSMGLYMGETETKVMG+DLGFPQQGQISLSSGETD
Sbjct: 60 RLLVDFPKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSGETDL 119
Query: 475 RLLEESIANLSRSTSVPENPKXXXXXXXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGG 654
+LLEESIANL+RSTSVPENPK FPKTHSD + EQ ++KGQTGTNGG
Sbjct: 120 KLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGG 179
Query: 655 NVKLFTTDQSTFDIWRKKLQDLELPSGSPGKETSESPWSSDLLIDENCLLSPLAGEEDPF 834
NVKL+TTDQSTFDI LQDLE SGSPGKET+ESPW SDLLIDENCLLSPLAGE+D F
Sbjct: 180 NVKLYTTDQSTFDI----LQDLEFSSGSPGKETNESPWRSDLLIDENCLLSPLAGEDDSF 235
Query: 835 LLEGSSTEDL*PLVLPDTKP*VKDNGELIXXXXXXXXXXXXKTEKEDFIELCT 993
LLEG+S ED PL+LPDTKP +KDNG+L+ KTEKEDFIELCT
Sbjct: 236 LLEGNSNEDCKPLILPDTKPKIKDNGDLVLSSPSNVTLPQVKTEKEDFIELCT 288
>ref|NP_001191187.1| glucocorticoid receptor isoform alpha-B [Homo sapiens].
Length = 751
Score = 358 bits (918), Expect = 6e-99
Identities = 187/266 (70%), Positives = 203/266 (76%)
Frame = +1
Query: 196 MDFYKSLRGGTXXXXXXXXXXXXXXXXXDSKQQRLAVDFPKGSGSNAQQPDLSKAVSLSM 375
MDFYK+LRGG DSKQ+RL VDFPKGS SNAQQPDLSKAVSLSM
Sbjct: 1 MDFYKTLRGGATVKVSASSPSLAVASQSDSKQRRLLVDFPKGSVSNAQQPDLSKAVSLSM 60
Query: 376 GLYMGETETKVMGSDLGFPQQGQISLSSGETDFRLLEESIANLSRSTSVPENPKXXXXXX 555
GLYMGETETKVMG+DLGFPQQGQISLSSGETD +LLEESIANL+RSTSVPENPK
Sbjct: 61 GLYMGETETKVMGNDLGFPQQGQISLSSGETDLKLLEESIANLNRSTSVPENPKSSASTA 120
Query: 556 XXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGGNVKLFTTDQSTFDIWRKKLQDLELPSG 735
FPKTHSD + EQ ++KGQTGTNGGNVKL+TTDQSTFDI LQDLE SG
Sbjct: 121 VSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGNVKLYTTDQSTFDI----LQDLEFSSG 176
Query: 736 SPGKETSESPWSSDLLIDENCLLSPLAGEEDPFLLEGSSTEDL*PLVLPDTKP*VKDNGE 915
SPGKET+ESPW SDLLIDENCLLSPLAGE+D FLLEG+S ED PL+LPDTKP +KDNG+
Sbjct: 177 SPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGNSNEDCKPLILPDTKPKIKDNGD 236
Query: 916 LIXXXXXXXXXXXXKTEKEDFIELCT 993
L+ KTEKEDFIELCT
Sbjct: 237 LVLSSPSNVTLPQVKTEKEDFIELCT 262
>ref|NP_001191188.1| glucocorticoid receptor isoform alpha-C1 [Homo sapiens].
Length = 692
Score = 293 bits (750), Expect = 2e-79
Identities = 150/207 (72%), Positives = 164/207 (79%)
Frame = +1
Query: 373 MGLYMGETETKVMGSDLGFPQQGQISLSSGETDFRLLEESIANLSRSTSVPENPKXXXXX 552
MGLYMGETETKVMG+DLGFPQQGQISLSSGETD +LLEESIANL+RSTSVPENPK
Sbjct: 1 MGLYMGETETKVMGNDLGFPQQGQISLSSGETDLKLLEESIANLNRSTSVPENPKSSAST 60
Query: 553 XXXXXXXXXXFPKTHSDGAPEQPNVKGQTGTNGGNVKLFTTDQSTFDIWRKKLQDLELPS 732
FPKTHSD + EQ ++KGQTGTNGGNVKL+TTDQSTFDI LQDLE S
Sbjct: 61 AVSAAPTEKEFPKTHSDVSSEQQHLKGQTGTNGGNVKLYTTDQSTFDI----LQDLEFSS 116
Query: 733 GSPGKETSESPWSSDLLIDENCLLSPLAGEEDPFLLEGSSTEDL*PLVLPDTKP*VKDNG 912
GSPGKET+ESPW SDLLIDENCLLSPLAGE+D FLLEG+S ED PL+LPDTKP +KDNG
Sbjct: 117 GSPGKETNESPWRSDLLIDENCLLSPLAGEDDSFLLEGNSNEDCKPLILPDTKPKIKDNG 176
Query: 913 ELIXXXXXXXXXXXXKTEKEDFIELCT 993
+L+ KTEKEDFIELCT
Sbjct: 177 DLVLSSPSNVTLPQVKTEKEDFIELCT 203
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,725,200
Number of extensions: 1192973
Number of successful extensions: 4093
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4051
Number of HSP's successfully gapped: 12
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013289
(994 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1679 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1679 bits (847), Expect = 0.0
Identities = 881/895 (98%)
Strand = Plus / Minus
Query: 100 agctgatacccactgatggaccccaaggaatcgctgannnnnnnnagcagagaagaaatc 159
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 151155865 agctgatacccactgatggaccccaaggaatcgctgaccccccccagcagagaagaaatc 151155806
Query: 160 cccagcagcgtgcttggccgggagagagcccatgtgatggacttctataaaagcctgagg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155805 cccagcagcgtgcttggccgggagagagcccatgtgatggacttctataaaagcctgagg 151155746
Query: 220 ggaggaactcctgtgaaggtttctgcagcttcaccctccctggctgctgtgtctcagcca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155745 ggaggaactcctgtgaaggtttctgcagcttcaccctccctggctgctgtgtctcagcca 151155686
Query: 280 gactccaagcagcagaggcttgcggtggactttccaaaaggctcaggaagcaatgcacag 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155685 gactccaagcagcagaggcttgcggtggactttccaaaaggctcaggaagcaatgcacag 151155626
Query: 340 cagccagatctgtccaaggcagtttcactctccatgggactgtacatgggagagaccgaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155625 cagccagatctgtccaaggcagtttcactctccatgggactgtacatgggagagaccgaa 151155566
Query: 400 actaaagtgatgggaagtgacctgggattcccacagcagggccaaatcagcctttcctct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155565 actaaagtgatgggaagtgacctgggattcccacagcagggccaaatcagcctttcctct 151155506
Query: 460 ggggagacagacttccggcttctggaagaaagcatcgcaaacctcagtaggtcgaccagt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155505 ggggagacagacttccggcttctggaagaaagcatcgcaaacctcagtaggtcgaccagt 151155446
Query: 520 gttccagagaaccccaagagttcagcctccgctgctggttctgctgctccggcagagaag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155445 gttccagagaaccccaagagttcagcctccgctgctggttctgctgctccggcagagaag 151155386
Query: 580 gcgtttccaaaaacccactctgatggggctccagagcagccgaatgtgaagggtcagact 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155385 gcgtttccaaaaacccactctgatggggctccagagcagccgaatgtgaagggtcagact 151155326
Query: 640 ggcaccaacgggggtaacgtgaagttgtttaccacagaccaaagcacctttgacatttgg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155325 ggcaccaacgggggtaacgtgaagttgtttaccacagaccaaagcacctttgacatttgg 151155266
Query: 700 aggaagaaactccaggatttggagcttccttctgggtctccaggtaaagagacaagtgag 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155265 aggaagaaactccaggatttggagcttccttctgggtctccaggtaaagagacaagtgag 151155206
Query: 760 agtccctggagctcggacctcttgatcgatgaaaactgtttgctctcccctttggcagga 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155205 agtccctggagctcggacctcttgatcgatgaaaactgtttgctctcccctttggcagga 151155146
Query: 820 gaggaggatcccttcctcttggaaggaagctcgaccgaagacttgtagcctcttgttttg 879
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 151155145 gaggaggatcccttcctcttggaaggaagctcgaccgaggactgtaagcctcttgttttg 151155086
Query: 880 ccggacacgaaaccttaagtgaaggataacggagagcttatcttaccgagccccaacagt 939
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155085 ccggacacgaaacctaaagtgaaggataacggagagcttatcttaccgagccccaacagt 151155026
Query: 940 gtgccactgcccccagtgaaaacagaaaaagaagattttatcgaactctgcaccc 994
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 151155025 gtgccactgccccaagtgaaaacagaaaaagaagattttatcgaactctgcaccc 151154971
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 1 cttctctccgggtgcgaacgagcggcggcggctgcagagtgggccgcccagacgatgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151159471 cttctctccgggtgcgaacgagcggcggcggctgcagagtgggccgcccagacgatgcgg 151159412
Query: 61 gggagggggaccctccggcacgcgact 87
|||||||||||||||||||||||||||
Sbjct: 151159411 gggagggggaccctccggcacgcgact 151159385
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,403,061
Number of extensions: 194
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 3
Length of query: 994
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 973
Effective length of database: 2,808,413,156
Effective search space: 2732586000788
Effective search space used: 2732586000788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)