Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013291
(1819 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 751 0.0
Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 482 e-136
Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 209 9e-54
>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin
sensitivity protein) [Canis familiaris].
Length = 452
Score = 751 bits (1940), Expect = 0.0
Identities = 359/386 (93%), Positives = 374/386 (96%)
Frame = +3
Query: 477 KIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLL 656
+I+ NFT+RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQ YLL
Sbjct: 67 RIVQNFTKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLL 126
Query: 657 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVC 836
RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSD ESQECITKLLQLQRTIVC
Sbjct: 127 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVC 186
Query: 837 RDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAER 1016
RDSDLPDELL+GRAGYLYALLY+NTE+GPG VCESAIKEVV AII+SGKTLS+EERKAER
Sbjct: 187 RDSDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVCAIIESGKTLSREERKAER 246
Query: 1017 CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYP 1196
CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHKRFRSGNYP
Sbjct: 247 CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKRFRSGNYP 306
Query: 1197 SSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGIC 1376
SSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL+DA+ECSDVIWQRGLLRKGYGIC
Sbjct: 307 SSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIWQRGLLRKGYGIC 366
Query: 1377 HGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHL 1556
HGTAGNGYSFLSLY LTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIH
Sbjct: 367 HGTAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHF 426
Query: 1557 LSDILAPETARFPAFELGSSERDPKV 1634
LSDILAPET+RFPAFEL +RD K+
Sbjct: 427 LSDILAPETSRFPAFELAPPQRDRKI 452
>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Canis familiaris].
Length = 399
Score = 482 bits (1240), Expect = e-136
Identities = 224/421 (53%), Positives = 301/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ D+ F G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADFNKSLAESY------------------FDCAGRLTPEFSQRLNNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIALLYL LY V D YL + YVK++L +L R
Sbjct: 43 LLQQMERGLKSADPRDSTVYTGWAGIALLYLHLYDVFGDPAYLQMAHGYVKQSLNSLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLA+GAVVYHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAIGAVVYHKMNNEKQAEDCITRLIHLNKI----DHHAPNEMLYGRMGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ +A++ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 VYALLFVNKNFGVEKIPQSHIQQICEAVLTSGENLAQKRNFTAKTPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY+LMQP+ +V L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYLLMQPSLQVSHVKLHNLVKPSVDYVCQLKFPSGNYPPCVDDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
+PGVI+ L+QAYK F+ E YL DA +C+DVIW+ GLLRKGYG+CHGTAGN Y+FL+LY L
Sbjct: 279 SPGVIYMLIQAYKAFRGEHYLNDAHQCADVIWRYGLLRKGYGLCHGTAGNAYAFLTLYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3
[Canis familiaris].
Length = 420
Score = 209 bits (531), Expect = 9e-54
Identities = 122/309 (39%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAMKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPE 1580
FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG +G + L D+L P
Sbjct: 350 FLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPN 409
Query: 1581 TARFPAFEL 1607
A FP F +
Sbjct: 410 QAEFPLFSV 418
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,275,787
Number of extensions: 1861391
Number of successful extensions: 6749
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6728
Number of HSP's successfully gapped: 3
Length of query: 606
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 497
Effective length of database: 15,240,880
Effective search space: 7574717360
Effective search space used: 7574717360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013291
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013291
(1819 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095726.1| lanC-like protein 2 [Bos taurus]. 813 0.0
Alignment gi|NP_001069695.1| lanC-like protein 1 [Bos taurus]. 485 e-137
Alignment gi|NP_001193337.1| lanC-like protein 3 [Bos taurus]. 208 1e-53
>ref|NP_001095726.1| lanC-like protein 2 [Bos taurus].
Length = 433
Score = 813 bits (2100), Expect = 0.0
Identities = 391/433 (90%), Positives = 406/433 (93%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
ME+RAFPNPFPDY L+PEELGLPFHSDGKII+NFTRRIQ+KIKD
Sbjct: 1 MEDRAFPNPFPDYEAAAERQAEEPPCSRTPLSPEELGLPFHSDGKIINNFTRRIQTKIKD 60
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQ+YLLRSLDYVKRTLRNLNGR
Sbjct: 61 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQSYLLRSLDYVKRTLRNLNGR 120
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
RVTFLCGDAGPLAVGAVVYHKLKSD ESQECITKLLQLQRTIVCRDSDLPDELL+GRAGY
Sbjct: 121 RVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVCRDSDLPDELLYGRAGY 180
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
LYALLYVNTE+GPGAVCESAIKEVV+AII+SGK LSKEE+K ERCPLLYQWHRKQYVGAA
Sbjct: 181 LYALLYVNTEIGPGAVCESAIKEVVNAIIESGKALSKEEKKVERCPLLYQWHRKQYVGAA 240
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG
Sbjct: 241 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 300
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVIH LMQA+KVFKEEKYL+DAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLY +
Sbjct: 301 APGVIHVLMQAHKVFKEEKYLKDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYHI 360
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAG IH LSDILAPE +RFPAFE
Sbjct: 361 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGTIHFLSDILAPEASRFPAFE 420
Query: 1605 LGSSERDPKVQKD 1643
L SS+RD KVQKD
Sbjct: 421 LSSSQRDTKVQKD 433
>ref|NP_001069695.1| lanC-like protein 1 [Bos taurus].
Length = 399
Score = 485 bits (1249), Expect = e-137
Identities = 227/421 (53%), Positives = 299/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDSAGRLTPEFSQRLNNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D NYL + YVK++L +L+
Sbjct: 43 LLQQMERGLKSADPRDSTVYTGWAGIAVLYLHLYDVFGDPNYLQMAHGYVKQSLNSLSKH 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGD GPLAV AVV+HK+ ++ +++ECIT+L+ L + D P E+L+GR GY
Sbjct: 103 SITFLCGDGGPLAVAAVVHHKMNNEKQAEECITRLIHLNKI----DRHAPSEMLYGRMGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+ ALL+VN G + +S I+++ + ++ SG+ L+++ R PL+Y+W+++ YVGAA
Sbjct: 159 ISALLFVNKNFGEEKIPQSHIQQICETVLTSGEDLARKRRFTGETPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V L +VKPS+DY+ +F SGNYP + + D L+HWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSHAKLHNLVKPSVDYVCQLKFPSGNYPPCVDDSRDLLIHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHGTAGN Y+FLSLY L
Sbjct: 279 APGVIYMLTQAYKVFKEERYLNDAYQCADVIWQYGLLKKGYGLCHGTAGNAYAFLSLYSL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDAKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_001193337.1| lanC-like protein 3 [Bos taurus].
Length = 420
Score = 208 bits (530), Expect = 1e-53
Identities = 122/309 (39%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAMKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPE 1580
FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG +G + L D+L P
Sbjct: 350 FLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPN 409
Query: 1581 TARFPAFEL 1607
A FP F +
Sbjct: 410 QAEFPLFSV 418
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,834,016
Number of extensions: 1862087
Number of successful extensions: 6694
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6676
Number of HSP's successfully gapped: 3
Length of query: 606
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 498
Effective length of database: 14,107,870
Effective search space: 7025719260
Effective search space used: 7025719260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013291
(1819 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361509.1| PREDICTED: lanC-like protein 2-like, partial... 782 0.0
Alignment gi|XP_001926406.3| PREDICTED: lanC-like protein 1 [Sus scrofa]. 461 e-130
Alignment gi|XP_003360315.1| PREDICTED: lanC-like protein 3-like [Sus scr... 185 6e-47
Alignment gi|XP_003359681.1| PREDICTED: lanC-like protein 1-like [Sus scr... 102 7e-22
>ref|XP_003361509.1| PREDICTED: lanC-like protein 2-like, partial [Sus scrofa].
Length = 626
Score = 782 bits (2020), Expect = 0.0
Identities = 378/382 (98%), Positives = 380/382 (99%)
Frame = +3
Query: 477 KIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLL 656
+IIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLL
Sbjct: 206 QIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLL 265
Query: 657 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVC 836
RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVC
Sbjct: 266 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVC 325
Query: 837 RDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAER 1016
RDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAER
Sbjct: 326 RDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAER 385
Query: 1017 CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYP 1196
CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYP
Sbjct: 386 CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYP 445
Query: 1197 SSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGIC 1376
SSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGIC
Sbjct: 446 SSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGIC 505
Query: 1377 HGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHL 1556
HGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEG +GAIH
Sbjct: 506 HGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGESGAIHF 565
Query: 1557 LSDILAPETARFPAFELGSSER 1622
LSDILAPETARFPAFELGSSER
Sbjct: 566 LSDILAPETARFPAFELGSSER 587
>ref|XP_001926406.3| PREDICTED: lanC-like protein 1 [Sus scrofa].
Length = 432
Score = 461 bits (1185), Expect = e-130
Identities = 219/421 (52%), Positives = 295/421 (70%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ D+ F S G++ F++R+ +KI++
Sbjct: 35 MAQRAFPNPYADFNKSLAEGY------------------FDSAGRLTPEFSQRVNNKIRE 76
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D +AYTGW GIA+LYL LY V D YL + Y K++L L R
Sbjct: 77 LLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKR 136
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AVV+ K+ ++ + I +L+ L + D P+E+L+GR GY
Sbjct: 137 SITFLCGDAGPLAVAAVVHDKMNNE-KHVIFIPRLIHLNKI----DPHAPNEMLYGRMGY 191
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + S I+++ + ++ SG+ L+++ E+ PL+Y+W+++ YVGAA
Sbjct: 192 IYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTPLMYEWYQEYYVGAA 251
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 252 HGLAGIYYYLMQPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLLVHWCHG 311
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
+PGVI+ L+QAYKVF+EE+YL DA +C+DVIW+ GLL+KGYG+CHGTAGN Y+FL+L+ L
Sbjct: 312 SPGVIYMLIQAYKVFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFLTLFNL 371
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR PD P+SLFEGMAG I+ L+D+L P A+FPAFE
Sbjct: 372 TQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFE 431
Query: 1605 L 1607
L
Sbjct: 432 L 432
>ref|XP_003360315.1| PREDICTED: lanC-like protein 3-like [Sus scrofa].
Length = 242
Score = 185 bits (470), Expect = 6e-47
Identities = 100/241 (41%), Positives = 146/241 (60%), Gaps = 5/241 (2%)
Frame = +3
Query: 900 YVNTEMGPGAVCESA-IKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAAHGMA 1076
+V T+ G V A IK + AI+DSGK + ++RK PL+Y ++ +Y+GAAHG++
Sbjct: 4 FVGTDKGTETVLTPAQIKSICQAILDSGKQYAMKKRKP--FPLMYSYYGTEYLGAAHGLS 61
Query: 1077 GIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR---LVHWCHGA 1247
I ML+ + E+V S+DY+ + ++ N+P L +R LVHWCHGA
Sbjct: 62 SILQMLLSYHEHLKPSD-QELVWQSVDYLMEQE-QNCNWPPELGEAIERENELVHWCHGA 119
Query: 1248 PGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRLT 1427
PG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y FL LYRLT
Sbjct: 120 PGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLT 179
Query: 1428 QDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
+ KY+YRA +FAE+ E G R+ + YSL+EG +G + L D+L P A FP F
Sbjct: 180 GNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPNQAEFPLFS 239
Query: 1605 L 1607
+
Sbjct: 240 V 240
>ref|XP_003359681.1| PREDICTED: lanC-like protein 1-like [Sus scrofa].
Length = 58
Score = 102 bits (254), Expect = 7e-22
Identities = 43/57 (75%), Positives = 49/57 (85%)
Frame = +3
Query: 1437 KYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFEL 1607
KYLYRACKFAEWCL+YG HGCR PD P+SLFEGMAG I+ L+D+L P A+FPAFEL
Sbjct: 2 KYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 58
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,699,003
Number of extensions: 1276540
Number of successful extensions: 4314
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4294
Number of HSP's successfully gapped: 4
Length of query: 606
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 501
Effective length of database: 8,729,747
Effective search space: 4373603247
Effective search space used: 4373603247
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013291
(1819 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598498.1| lanC-like protein 2 [Mus musculus]. 761 0.0
Alignment gi|NP_001177913.1| lanC-like protein 1 [Mus musculus]. 483 e-136
Alignment gi|NP_067270.1| lanC-like protein 1 [Mus musculus]. 483 e-136
Alignment gi|NP_001177914.1| lanC-like protein 1 [Mus musculus]. 483 e-136
Alignment gi|NP_775590.2| lanC-like protein 3 [Mus musculus]. 207 3e-53
>ref|NP_598498.1| lanC-like protein 2 [Mus musculus].
Length = 450
Score = 761 bits (1964), Expect = 0.0
Identities = 368/451 (81%), Positives = 404/451 (89%), Gaps = 6/451 (1%)
Frame = +3
Query: 291 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXX------LTPEEL 452
MGET+S+RL F +AEMEER+FPNPFPDY T E+
Sbjct: 1 MGETMSKRLKFHLG-EAEMEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDP 59
Query: 453 GLPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 632
GLPFH +GKI+ NF +RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV
Sbjct: 60 GLPFHPNGKIVPNFIKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 119
Query: 633 TCDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLL 812
T DQ YLLRSLDYVKRTLRNL+GRRVTFLCGDAGPLAVGAV+YHKLKS+ ESQECITKLL
Sbjct: 120 TGDQTYLLRSLDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLL 179
Query: 813 QLQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLS 992
Q+ RTIVC++S+LPDELL+GRAGYLYALLY+NTE+GPG V E+AIKEVV AII+SGK+LS
Sbjct: 180 QMHRTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLS 239
Query: 993 KEERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHK 1172
+EERK+ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQP AKVDQETLTEMVKPSIDY+RHK
Sbjct: 240 REERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHK 299
Query: 1173 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 1352
+FRSGNYPSSLSNETDRLVHWCHGAPGVIH L+QAY+VFKEEKYL++A+ECSDVIWQRGL
Sbjct: 300 KFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAMECSDVIWQRGL 359
Query: 1353 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 1532
LRKGYGICHGT+GNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPYSLFE
Sbjct: 360 LRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFE 419
Query: 1533 GMAGAIHLLSDILAPETARFPAFELGSSERD 1625
GMAGA+H LSDIL PETARFPAFELG ++D
Sbjct: 420 GMAGAVHFLSDILVPETARFPAFELGFLQKD 450
>ref|NP_001177913.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 483 bits (1243), Expect = e-136
Identities = 228/421 (54%), Positives = 303/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHG AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR D P+SLFEGMAG I+ L+D+L P A+FPAFE
Sbjct: 339 TQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_067270.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 483 bits (1243), Expect = e-136
Identities = 228/421 (54%), Positives = 303/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHG AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR D P+SLFEGMAG I+ L+D+L P A+FPAFE
Sbjct: 339 TQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_001177914.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 483 bits (1243), Expect = e-136
Identities = 228/421 (54%), Positives = 303/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHG AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR D P+SLFEGMAG I+ L+D+L P A+FPAFE
Sbjct: 339 TQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_775590.2| lanC-like protein 3 [Mus musculus].
Length = 420
Score = 207 bits (526), Expect = 3e-53
Identities = 120/309 (38%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLDCGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYQEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY + K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPE 1580
FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG +G + L D+L P
Sbjct: 350 FLLLYRLTGNSKYIYRAQRFAQFLFTEEFKSGSRVLESIYSLYEGFSGTVCFLIDLLQPN 409
Query: 1581 TARFPAFEL 1607
A FP F +
Sbjct: 410 QAEFPLFSV 418
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,200,899
Number of extensions: 1512979
Number of successful extensions: 5022
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4984
Number of HSP's successfully gapped: 5
Length of query: 606
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 499
Effective length of database: 12,403,707
Effective search space: 6189449793
Effective search space used: 6189449793
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013291
(1819 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061167.1| lanC-like protein 2 [Homo sapiens]. 792 0.0
Alignment gi|NP_006046.1| lanC-like protein 1 [Homo sapiens]. 485 e-137
Alignment gi|NP_001130047.1| lanC-like protein 1 [Homo sapiens]. 485 e-137
Alignment gi|NP_001130046.1| lanC-like protein 1 [Homo sapiens]. 485 e-137
Alignment gi|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens]. 207 3e-53
Alignment gi|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens]. 175 1e-43
>ref|NP_061167.1| lanC-like protein 2 [Homo sapiens].
Length = 450
Score = 792 bits (2045), Expect = 0.0
Identities = 381/450 (84%), Positives = 408/450 (90%), Gaps = 5/450 (1%)
Frame = +3
Query: 291 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXXL-----TPEELG 455
MGET+S+RL +AEMEERAF NPFPDY T +E G
Sbjct: 1 MGETMSKRLKLHLGGEAEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPG 60
Query: 456 LPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 635
LPFH DGKIIHNF RRIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT
Sbjct: 61 LPFHQDGKIIHNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 120
Query: 636 CDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQ 815
CDQ YLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAV+YHKL+SD ESQEC+TKLLQ
Sbjct: 121 CDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQ 180
Query: 816 LQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSK 995
LQR++VC++SDLPDELL+GRAGYLYALLY+NTE+GPG VCESAIKEVV+AII+SGKTLS+
Sbjct: 181 LQRSVVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSR 240
Query: 996 EERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKR 1175
EERK ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHK+
Sbjct: 241 EERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKK 300
Query: 1176 FRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLL 1355
FRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL++A+ECSDVIWQRGLL
Sbjct: 301 FRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIWQRGLL 360
Query: 1356 RKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEG 1535
RKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPYSLFEG
Sbjct: 361 RKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEG 420
Query: 1536 MAGAIHLLSDILAPETARFPAFELGSSERD 1625
MAGAIH LSD+L PET+RFPAFEL SS+RD
Sbjct: 421 MAGAIHFLSDVLGPETSRFPAFELDSSKRD 450
>ref|NP_006046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 485 bits (1248), Expect = e-137
Identities = 228/421 (54%), Positives = 302/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GLL+KGYG+CHG+AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCLEYG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_001130047.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 485 bits (1248), Expect = e-137
Identities = 228/421 (54%), Positives = 302/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GLL+KGYG+CHG+AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCLEYG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_001130046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 485 bits (1248), Expect = e-137
Identities = 228/421 (54%), Positives = 302/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GLL+KGYG+CHG+AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCLEYG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens].
Length = 420
Score = 207 bits (526), Expect = 3e-53
Identities = 121/309 (39%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPE 1580
FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG +G + L D+L P
Sbjct: 350 FLLLYRLTGNSKYIYRAQRFAQFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPN 409
Query: 1581 TARFPAFEL 1607
A FP F +
Sbjct: 410 QAEFPLFSV 418
>ref|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens].
Length = 388
Score = 175 bits (444), Expect = 1e-43
Identities = 102/257 (39%), Positives = 145/257 (56%), Gaps = 7/257 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRA 1454
FL LYRLT + KY+YRA
Sbjct: 350 FLLLYRLTGNSKYIYRA 366
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,808,536
Number of extensions: 1811834
Number of successful extensions: 6050
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6013
Number of HSP's successfully gapped: 6
Length of query: 606
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 498
Effective length of database: 14,737,052
Effective search space: 7339051896
Effective search space used: 7339051896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013291
(1819 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894522.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 418 e-114
>gb|GL894522.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3179
Length = 75245
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Minus
Query: 595 caggcatagcccttttgtaccttcaattgtaccgggtcacatgtgaccagaactatctgc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42522 caggcatagcccttttgtaccttcaattgtaccgggtcacatgtgaccagaactatctgc 42463
Query: 655 tccgatccctggattacgtaaaaagaacacttcggaatctgaacggccggagggtcactt 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42462 tccgatccctggattacgtaaaaagaacacttcggaatctgaacggccggagggtcactt 42403
Query: 715 tcctctgtggagatgccgggcccctggccgtcggagctgtggtgtatcacaaactcaaaa 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42402 tcctctgtggagatgccgggcccctggccgtcggagctgtggtgtatcacaaactcaaaa 42343
Query: 775 gtgatggcgagtcccaggaatgcatcacaaa 805
|||||||||||||||||||||||||||||||
Sbjct: 42342 gtgatggcgagtcccaggaatgcatcacaaa 42312
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 1099 agccagcagcaaaagtggaccaagaaaccttgacagagatggtgaagcctagtattgact 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35858 agccagcagcaaaagtggaccaagaaaccttgacagagatggtgaagcctagtattgact 35799
Query: 1159 acatgcgccacaaaaggttccgatccggaaactacccatcctcgttaagcaacgagacag 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35798 acatgcgccacaaaaggttccgatccggaaactacccatcctcgttaagcaacgagacag 35739
Query: 1219 accgcctggtacactggtgccacggggcgcccggcgtcatccacacgctcatgcaggcgt 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35738 accgcctggtacactggtgccacggggcgcccggcgtcatccacacgctcatgcaggcgt 35679
Query: 1279 acaaggt 1285
|||||||
Sbjct: 35678 acaaggt 35672
Score = 355 bits (179), Expect = 5e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 1282 aggtgtttaaggaggagaagtacctgagggacgccgtggagtgcagcgacgtgatttggc 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34373 aggtgtttaaggaggagaagtacctgagggacgccgtggagtgcagcgacgtgatttggc 34314
Query: 1342 agcggggcctgctgcgcaagggctacggcatctgccacgggactgcgggcaacggctact 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34313 agcggggcctgctgcgcaagggctacggcatctgccacgggactgcgggcaacggctact 34254
Query: 1402 ccttcctctccctttaccgcctcacgcaggacaagaagtacctctaccgagcttgcaag 1460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34253 ccttcctctccctttaccgcctcacgcaggacaagaagtacctctaccgagcttgcaag 34195
Score = 305 bits (154), Expect = 5e-80
Identities = 162/165 (98%)
Strand = Plus / Minus
Query: 1655 ccgacgggaccacaggccgccaggttgcctggcgcctgacacagaagccaccgtgcatcc 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27850 ccgacgggaccacaggccgccaggttgcctggcgcctgacacagaagccaccgtgcatcc 27791
Query: 1715 tgaggaaggnaggacggagggagcaaagccccgcagacccccggcccgccagcctgctgt 1774
||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 27790 tgaggaagggaggacggagggagcagagccccgcagacccccgccccgccagcctgctgt 27731
Query: 1775 gctcccctcgctggtgtcagcgtgacgtctccgtgtccagtgctg 1819
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27730 gctcccctcgctggtgtcagcgtgacgtctccgtgtccagtgctg 27686
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 806 actcctgcagctccagagaaccatcgtctgccgcgactcggaccttcccgatgagctgct 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41432 actcctgcagctccagagaaccatcgtctgccgcgactcggaccttcccgatgagctgct 41373
Query: 866 tttcggccgcgcgggctacctgtacgccttgctctatgtgaacacggagatgggtccggg 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41372 tttcggccgcgcgggctacctgtacgccttgctctatgtgaacacggagatgggtccggg 41313
Query: 926 cgccgtgtgcgaatcagccatcaaagaggt 955
||||||||||||||||||||||||||||||
Sbjct: 41312 cgccgtgtgcgaatcagccatcaaagaggt 41283
Score = 295 bits (149), Expect = 4e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 952 aggtggtcgatgctattattgattcgggcaagactttgtcaaaggaagaaaggaaggccg 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39808 aggtggtcgatgctattattgattcgggcaagactttgtcaaaggaagaaaggaaggccg 39749
Query: 1012 agcgctgccccctgttgtaccagtggcacaggaagcagtacgtcggagccgcccatggca 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39748 agcgctgccccctgttgtaccagtggcacaggaagcagtacgtcggagccgcccatggca 39689
Query: 1072 tggctgggatctactacatgctaatgcag 1100
|||||||||||||||||||||||||||||
Sbjct: 39688 tggctgggatctactacatgctaatgcag 39660
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 478 agatcattcataatttcacaaggcggatccagagcaaaatcaaagatcttctacagcaga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49399 agatcattcataatttcacaaggcggatccagagcaaaatcaaagatcttctacagcaga 49340
Query: 538 tggaagaagggctgaagacagctgatccgcacgattgctctgcttacacgggttggacag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49339 tggaagaagggctgaagacagctgatccgcacgattgctctgcttacacgggttggacag 49280
Query: 598 g 598
|
Sbjct: 49279 g 49279
Score = 161 bits (81), Expect = 2e-36
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 1540 ccggcgccattcacctcctctccgacatcctggcccccgagacagcacggtttccagcat 1599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28035 ccggcgccattcacttcctctccgacatcctggcccccgagacagcacggtttccagcat 27976
Query: 1600 ttgaactcggctcttcagagaggga 1624
|||||||||||||||||||||||||
Sbjct: 27975 ttgaactcggctcttcagagaggga 27951
Score = 155 bits (78), Expect = 1e-34
Identities = 81/82 (98%)
Strand = Plus / Minus
Query: 1453 cttgcaagtttgcagagtggtgtctggagtacggagcacatggttgccgcattcccgaca 1512
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32067 cttgctagtttgcagagtggtgtctggagtacggagcacatggttgccgcattcccgaca 32008
Query: 1513 ggccctactctctcttcgaagg 1534
||||||||||||||||||||||
Sbjct: 32007 ggccctactctctcttcgaagg 31986
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,510,068
Number of extensions: 201
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 9
Length of query: 1819
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1797
Effective length of database: 2,808,408,574
Effective search space: 5046710207478
Effective search space used: 5046710207478
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)