Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013295
(1419 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029515.1| 28S ribosomal protein S7, mitochondrial prec... 429 e-120
Alignment gi|XP_002696227.1| PREDICTED: hypothetical protein [Bos taurus]. 55 3e-10
Alignment gi|XP_002702287.1| PREDICTED: hypothetical protein [Bos taurus]. 55 3e-10
>ref|NP_001029515.1| 28S ribosomal protein S7, mitochondrial precursor [Bos taurus].
Length = 242
Score = 429 bits (1104), Expect = e-120
Identities = 210/230 (91%), Positives = 220/230 (95%)
Frame = +1
Query: 262 RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK 441
RGWS ALGVRIAVLR PGLTQVRWSRYGPEY+DPQIDKEYYRKPLA+ TEEE YER+ +
Sbjct: 10 RGWSGLALGVRIAVLRLPGLTQVRWSRYGPEYQDPQIDKEYYRKPLAQLTEEETYERELR 69
Query: 442 KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAA 621
KTQ+IKAAPATKTSSVFEDPVISKFTNMMMKGGNK+LARSLMTQTLEAVKRKQF KYHAA
Sbjct: 70 KTQVIKAAPATKTSSVFEDPVISKFTNMMMKGGNKILARSLMTQTLEAVKRKQFEKYHAA 129
Query: 622 SAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA 801
SAEEQAT+ERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLA+RRRRFLAMKWMI
Sbjct: 130 SAEEQATVERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLAERRRRFLAMKWMIT 189
Query: 802 ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 951
ECREKK RR+LMPEKLSQELLEAF N+GPVIKRKHDMHKMAEANRALAHY
Sbjct: 190 ECREKKPRRMLMPEKLSQELLEAFCNRGPVIKRKHDMHKMAEANRALAHY 239
>ref|XP_002696227.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 96
Score = 55.1 bits (131), Expect(2) = 3e-10
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -1
Query: 318 PWKPEDGNPHAQGRARPPSRSLHRGGSHLGWPRGP 214
PWKP+D PHA+ +A PPSR+L RGGSHLG + P
Sbjct: 40 PWKPQDSYPHAESQAGPPSRNLRRGGSHLGCQQDP 74
Score = 29.3 bits (64), Expect(2) = 3e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2
Query: 221 EDPTETALGAPELVTE 174
+DPTETALG PE VT+
Sbjct: 72 QDPTETALGVPERVTK 87
>ref|XP_002702287.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 96
Score = 55.1 bits (131), Expect(2) = 3e-10
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -1
Query: 318 PWKPEDGNPHAQGRARPPSRSLHRGGSHLGWPRGP 214
PWKP+D PHA+ +A PPSR+L RGGSHLG + P
Sbjct: 40 PWKPQDSYPHAESQAGPPSRNLRRGGSHLGCQQDP 74
Score = 29.3 bits (64), Expect(2) = 3e-10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2
Query: 221 EDPTETALGAPELVTE 174
+DPTETALG PE VT+
Sbjct: 72 QDPTETALGVPERVTK 87
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,719,584
Number of extensions: 1707025
Number of successful extensions: 6731
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6702
Number of HSP's successfully gapped: 5
Length of query: 473
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,174,046
Effective search space: 5201874882
Effective search space used: 5201874882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-013295
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013295
(1419 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852008.1| PREDICTED: similar to mitochondrial ribosomal p... 419 e-117
Alignment gi|XP_850023.1| PREDICTED: similar to mitchondrial ribosomal pr... 157 7e-39
Alignment gi|XP_850556.1| PREDICTED: similar to mitochondrial ribosomal p... 156 4e-38
Alignment gi|XP_848493.1| PREDICTED: similar to mitochondrial ribosomal p... 156 5e-38
>ref|XP_852008.1| PREDICTED: similar to mitochondrial ribosomal protein S7 [Canis
familiaris].
Length = 242
Score = 419 bits (1078), Expect = e-117
Identities = 204/229 (89%), Positives = 213/229 (93%)
Frame = +1
Query: 265 GWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFKK 444
GW AL +R V R PGLTQVRWSRYGPEYKDP+IDKEYYRKPLAE TEEEKYE++ +K
Sbjct: 11 GWPILALSLRSGVRRLPGLTQVRWSRYGPEYKDPRIDKEYYRKPLAELTEEEKYEQELRK 70
Query: 445 TQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAAS 624
TQLIKAAPA KTSSVFEDPVISKFTNMMMKGGNKVLARSLM QTLEAVKRKQF KYHAAS
Sbjct: 71 TQLIKAAPAAKTSSVFEDPVISKFTNMMMKGGNKVLARSLMMQTLEAVKRKQFEKYHAAS 130
Query: 625 AEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIAE 804
AEEQATIERNPY IFHQAL+NCEPVIGLVPIL+GGHFYQVPVPLADRRRRFLAMKWMI E
Sbjct: 131 AEEQATIERNPYVIFHQALQNCEPVIGLVPILRGGHFYQVPVPLADRRRRFLAMKWMIKE 190
Query: 805 CREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 951
CREKKHRR+LMPEKLS ELLEAFHNQGPVIK+KHDMHKMAEANRALAHY
Sbjct: 191 CREKKHRRMLMPEKLSHELLEAFHNQGPVIKKKHDMHKMAEANRALAHY 239
>ref|XP_850023.1| PREDICTED: similar to mitchondrial ribosomal protein S7 [Canis
familiaris].
Length = 238
Score = 157 bits (397), Expect(2) = 7e-39
Identities = 76/99 (76%), Positives = 83/99 (83%)
Frame = +1
Query: 649 RNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIAECREKKHRR 828
R P +L+ CEPVIGLVPIL+GGHFY VPVPLA RRR FLAMKWMI ECREKKHRR
Sbjct: 128 RQPLCRLPPSLQGCEPVIGLVPILRGGHFYPVPVPLAHRRRCFLAMKWMIKECREKKHRR 187
Query: 829 VLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALA 945
+LMPEKLS E LEAFH +GPVIK+K DMHKMAEA+RALA
Sbjct: 188 LLMPEKLSHEPLEAFHTEGPVIKKKRDMHKMAEASRALA 226
Score = 23.1 bits (48), Expect(2) = 7e-39
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 630 GTSNHRTQPLYHLPP 674
GT + R QPL LPP
Sbjct: 122 GTGHRRRQPLCRLPP 136
Score = 84.0 bits (206), Expect = 3e-16
Identities = 40/69 (57%), Positives = 49/69 (71%)
Frame = +1
Query: 265 GWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFKK 444
GW AL +R AVLR PGLT V WSR+GPEYKDP+ID+EYYR+PLAE EEEK ++
Sbjct: 69 GWPTLALSLRSAVLRPPGLTHVSWSRHGPEYKDPRIDQEYYREPLAELAEEEKGTGHRRR 128
Query: 445 TQLIKAAPA 471
L + P+
Sbjct: 129 QPLCRLPPS 137
>ref|XP_850556.1| PREDICTED: similar to mitochondrial ribosomal protein S7 [Canis
familiaris].
Length = 312
Score = 156 bits (395), Expect = 4e-38
Identities = 75/90 (83%), Positives = 82/90 (91%)
Frame = +1
Query: 676 ALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIAECREKKHRRVLMPEKLSQ 855
+L++CEPVIGLVPIL+GG FYQ PVPLA RRRRFLAMKWMI ECREKKHRR+LMPEKLS
Sbjct: 218 SLQSCEPVIGLVPILRGGRFYQGPVPLARRRRRFLAMKWMIKECREKKHRRMLMPEKLSH 277
Query: 856 ELLEAFHNQGPVIKRKHDMHKMAEANRALA 945
E LEAFHNQGPVIK+K DMHKMAEA+RA A
Sbjct: 278 EPLEAFHNQGPVIKKKRDMHKMAEASRARA 307
Score = 42.4 bits (98), Expect(2) = 2e-09
Identities = 26/60 (43%), Positives = 32/60 (53%)
Frame = +3
Query: 135 EAQV*EPVQPFPDFCHQLRRTEGSLCGVLVASQDGCPRGEGCARVVVLGLGRADCRPPVS 314
+ +V +P +P Q R +G GVLVASQDG PRGEG RV G A+ P S
Sbjct: 83 DVRVQDPAEPVSRLLAQAR--QGQPSGVLVASQDGGPRGEGLGRVADPGAEPAESCPAAS 140
Score = 38.9 bits (89), Expect(2) = 2e-09
Identities = 21/35 (60%), Positives = 24/35 (68%)
Frame = +1
Query: 10 EKRERRHRGLRQAAANNGSANVSF*LFTLDPGVRD 114
EKRE R RG R+AAA+ + NVSF L LD G RD
Sbjct: 40 EKREPRCRGSRRAAADKETPNVSFRLLPLDLGARD 74
>ref|XP_848493.1| PREDICTED: similar to mitochondrial ribosomal protein S7 [Canis
familiaris].
Length = 120
Score = 156 bits (394), Expect = 5e-38
Identities = 75/89 (84%), Positives = 81/89 (91%)
Frame = +1
Query: 679 LKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIAECREKKHRRVLMPEKLSQE 858
L++CEPVIGLVPIL+GG FYQ PVPLA RRRRFLAMKWMI ECREKKHRR+LMPEKLS E
Sbjct: 27 LQSCEPVIGLVPILRGGRFYQGPVPLARRRRRFLAMKWMIKECREKKHRRMLMPEKLSHE 86
Query: 859 LLEAFHNQGPVIKRKHDMHKMAEANRALA 945
LEAFHNQGPVIK+K DMHKMAEA+RA A
Sbjct: 87 PLEAFHNQGPVIKKKRDMHKMAEASRARA 115
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,082,670
Number of extensions: 1748637
Number of successful extensions: 6792
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6758
Number of HSP's successfully gapped: 8
Length of query: 473
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 366
Effective length of database: 15,307,552
Effective search space: 5602564032
Effective search space used: 5602564032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013295
(1419 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131254.1| PREDICTED: 28S ribosomal protein S7, mitocho... 469 e-132
Alignment gi|XP_003131255.1| PREDICTED: 28S ribosomal protein S7, mitocho... 446 e-125
Alignment gi|XP_003131256.1| PREDICTED: 28S ribosomal protein S7, mitocho... 385 e-107
>ref|XP_003131254.1| PREDICTED: 28S ribosomal protein S7, mitochondrial-like isoform 1
[Sus scrofa].
Length = 242
Score = 469 bits (1207), Expect = e-132
Identities = 230/230 (100%), Positives = 230/230 (100%)
Frame = +1
Query: 262 RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK 441
RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK
Sbjct: 10 RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK 69
Query: 442 KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAA 621
KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAA
Sbjct: 70 KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAA 129
Query: 622 SAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA 801
SAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA
Sbjct: 130 SAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA 189
Query: 802 ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 951
ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY
Sbjct: 190 ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 239
>ref|XP_003131255.1| PREDICTED: 28S ribosomal protein S7, mitochondrial-like isoform 2
[Sus scrofa].
Length = 233
Score = 446 bits (1147), Expect = e-125
Identities = 221/230 (96%), Positives = 221/230 (96%)
Frame = +1
Query: 262 RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK 441
RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK
Sbjct: 10 RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK 69
Query: 442 KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAA 621
KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNK TLEAVKRKQFAKYHAA
Sbjct: 70 KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNK---------TLEAVKRKQFAKYHAA 120
Query: 622 SAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA 801
SAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA
Sbjct: 121 SAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA 180
Query: 802 ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 951
ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY
Sbjct: 181 ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 230
>ref|XP_003131256.1| PREDICTED: 28S ribosomal protein S7, mitochondrial-like isoform 3
[Sus scrofa].
Length = 208
Score = 385 bits (988), Expect = e-107
Identities = 196/230 (85%), Positives = 196/230 (85%)
Frame = +1
Query: 262 RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK 441
RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK
Sbjct: 10 RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK 69
Query: 442 KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAA 621
KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMT
Sbjct: 70 KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMT----------------- 112
Query: 622 SAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA 801
QALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA
Sbjct: 113 -----------------QALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA 155
Query: 802 ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 951
ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY
Sbjct: 156 ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 205
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,839,787
Number of extensions: 1135252
Number of successful extensions: 4200
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4184
Number of HSP's successfully gapped: 4
Length of query: 473
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 370
Effective length of database: 8,779,541
Effective search space: 3248430170
Effective search space used: 3248430170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013295
(1419 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079581.1| 28S ribosomal protein S7, mitochondrial precurs... 392 e-109
>ref|NP_079581.1| 28S ribosomal protein S7, mitochondrial precursor [Mus musculus].
Length = 242
Score = 392 bits (1006), Expect = e-109
Identities = 194/228 (85%), Positives = 205/228 (89%)
Frame = +1
Query: 268 WSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFKKT 447
WS ALGVR AV PGLTQVR SRY PE+++P IDKEYYRKP+AE TEEEKY+++ KKT
Sbjct: 12 WSGLALGVRCAVWNLPGLTQVRGSRYAPEFREPLIDKEYYRKPVAELTEEEKYDQELKKT 71
Query: 448 QLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAASA 627
Q IKAA AT+TSSVF DPVISKFTNMMMKGGNKVLARSLM QTLEAVKRKQF KY AASA
Sbjct: 72 QFIKAAAATETSSVFADPVISKFTNMMMKGGNKVLARSLMAQTLEAVKRKQFEKYRAASA 131
Query: 628 EEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIAEC 807
EEQATIERNPY IFH+ALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMI EC
Sbjct: 132 EEQATIERNPYRIFHEALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMITEC 191
Query: 808 REKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 951
RE K RR LMPEKLS ELLEAFHN+GPVIKRKH+MHKMAEANRALAHY
Sbjct: 192 RENKPRRTLMPEKLSHELLEAFHNRGPVIKRKHNMHKMAEANRALAHY 239
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,684,005
Number of extensions: 1404449
Number of successful extensions: 5125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5104
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 368
Effective length of database: 12,463,779
Effective search space: 4586670672
Effective search space used: 4586670672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013295
(1419 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057055.2| 28S ribosomal protein S7, mitochondrial precurs... 410 e-114
>ref|NP_057055.2| 28S ribosomal protein S7, mitochondrial precursor [Homo sapiens].
Length = 242
Score = 410 bits (1054), Expect = e-114
Identities = 202/230 (87%), Positives = 211/230 (91%)
Frame = +1
Query: 262 RGWSCSALGVRIAVLRFPGLTQVRWSRYGPEYKDPQIDKEYYRKPLAEQTEEEKYERDFK 441
RGWS ALGVR AVL+ PGLTQVRWSRY PE+KDP IDKEYYRKP+ E TEEEKY R+ K
Sbjct: 10 RGWSGLALGVRRAVLQLPGLTQVRWSRYSPEFKDPLIDKEYYRKPVEELTEEEKYVRELK 69
Query: 442 KTQLIKAAPATKTSSVFEDPVISKFTNMMMKGGNKVLARSLMTQTLEAVKRKQFAKYHAA 621
KTQLIKAAPA KTSSVFEDPVISKFTNMMM GGNKVLARSLM QTLEAVKRKQF KYHAA
Sbjct: 70 KTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEAVKRKQFEKYHAA 129
Query: 622 SAEEQATIERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMIA 801
SAEEQATIERNPYTIFHQALKNCEP+IGLVPILKGG FYQVPVPL DRRRRFLAMKWMI
Sbjct: 130 SAEEQATIERNPYTIFHQALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRRFLAMKWMIT 189
Query: 802 ECREKKHRRVLMPEKLSQELLEAFHNQGPVIKRKHDMHKMAEANRALAHY 951
ECR+KKH+R LMPEKLS +LLEAFHNQGPVIKRKHD+HKMAEANRALAHY
Sbjct: 190 ECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHDLHKMAEANRALAHY 239
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,818,674
Number of extensions: 1698516
Number of successful extensions: 6519
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6497
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,802,980
Effective search space: 5432693660
Effective search space used: 5432693660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013295
(1419 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1251 0.0
Sscrofa_Chr15 64 2e-07
>Sscrofa_Chr12
|| Length = 63588571
Score = 1251 bits (631), Expect = 0.0
Identities = 651/655 (99%), Gaps = 2/655 (0%)
Strand = Plus / Plus
Query: 738 ccaggtccctgtgccgctagctgatcggcgtcgccgcttcctggccatgaagtggatgat 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5816806 ccaggtccctgtgccgctagctgatcggcgtcgccgcttcctggccatgaagtggatgat 5816865
Query: 798 cgctgagtgcagggagaagaagcatcggcgggtgctgatgccggagaagctgtcgcagga 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5816866 cgctgagtgcagggagaagaagcatcggcgggtgctgatgccggagaagctgtcgcagga 5816925
Query: 858 gctgctggaggcttttcacaaccagggccctgtgatcaagaggaagcatgacatgcacaa 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5816926 gctgctggaggcttttcacaaccagggccctgtgatcaagaggaagcatgacatgcacaa 5816985
Query: 918 gatggccgaggccaaccgcgcgctggcccactaccgctggtggtagagggcggccggggg 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5816986 gatggccgaggccaaccgcgcgctggcccactaccgctggtggtagagggcggccggggg 5817045
Query: 978 ctggcgaggcctggcgctctctgctgcaggaaccagtgggaaccgatgggagcccctgcc 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5817046 ctggcgaggcctggcgctctctgctgcaggaaccagtgggaaccgatgggagcccctgcc 5817105
Query: 1038 atgctgagaaacacctggggtttaagagtctagttccctttaaagggccggcaggcctca 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5817106 atgctgagaaacacctggggtttaagagtctagttccctttaaagggccggcaggcctca 5817165
Query: 1098 tgagaacgatggagcagcgtgttgattgctgtgagtcctttctttgggggctagaactcg 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5817166 tgagaacgatggagcagcgtgttgattgctgtgagtcctttctttgggggctagaactcg 5817225
Query: 1158 ctctccctgccccatctccttgcaaagaggggacatagcaacttggatttccaagacaca 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5817226 ctctccctgccccatctccttgcaaagaggggacatagcaacttggatttccaagacaca 5817285
Query: 1218 ggcttgtccagccttctcttctctcagcttggggcagacctttgggcaatacgaaaggaa 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5817286 ggcttgtccagccttctcttctctcagcttggggcagacctttgggcaatacgaaaggaa 5817345
Query: 1278 gcagttttagtatcagaaaaatgtttattagaaaattctcatcctgaagtggtgtggctt 1337
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5817346 gcagttttagtatcag-aaaatgtttattagaaaattctcatcctgaagtggtgtggctt 5817404
Query: 1338 gcgatgtggtagtgcccttccttaaaaccagcggcagggaggggtgcttggttcc 1392
|||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct: 5817405 gcgatgtggtagtgcccttcattaaaaccagcggca-ggaagggtgcttggttcc 5817458
Score = 630 bits (318), Expect = e-178
Identities = 318/318 (100%)
Strand = Plus / Plus
Query: 1 tagggccctgagaagagagagcgccgccaccgagggttgcgccaggctgcggcgaataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5813904 tagggccctgagaagagagagcgccgccaccgagggttgcgccaggctgcggcgaataat 5813963
Query: 61 gggagcgcgaatgtttccttttgactcttcaccttagaccccggtgtgagagactcttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5813964 gggagcgcgaatgtttccttttgactcttcaccttagaccccggtgtgagagactcttaa 5814023
Query: 121 ggcccccatagggtgaagcccaggtttaggagcctgtgcagcctttcccggacttctgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814024 ggcccccatagggtgaagcccaggtttaggagcctgtgcagcctttcccggacttctgtc 5814083
Query: 181 accagctcaggcgcaccgagggcagtctctgtggggtcctcgtggccagccaagatggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814084 accagctcaggcgcaccgagggcagtctctgtggggtcctcgtggccagccaagatggct 5814143
Query: 241 gcccccgcggtgaaggctgcgcgagggtggtcgtgctcggccttgggcgtgcggattgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814144 gcccccgcggtgaaggctgcgcgagggtggtcgtgctcggccttgggcgtgcggattgcc 5814203
Query: 301 gtcctccggtttccaggg 318
||||||||||||||||||
Sbjct: 5814204 gtcctccggtttccaggg 5814221
Score = 383 bits (193), Expect = e-103
Identities = 193/193 (100%)
Strand = Plus / Plus
Query: 317 ggctaacccaggtgaggtggagccgctatggtcctgaatacaaggatccccagattgaca 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814735 ggctaacccaggtgaggtggagccgctatggtcctgaatacaaggatccccagattgaca 5814794
Query: 377 aggaatattaccgcaagccgttggcggagcagacggaggaggagaagtatgagcgggatt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814795 aggaatattaccgcaagccgttggcggagcagacggaggaggagaagtatgagcgggatt 5814854
Query: 437 tcaagaagacgcaacttatcaaagccgcccccgcgaccaaaacaagttctgtgtttgaag 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814855 tcaagaagacgcaacttatcaaagccgcccccgcgaccaaaacaagttctgtgtttgaag 5814914
Query: 497 acccggtgatcag 509
|||||||||||||
Sbjct: 5814915 acccggtgatcag 5814927
Score = 343 bits (173), Expect = 2e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 571 cagacactggaagctgtgaagagaaagcagtttgccaagtaccacgctgcctctgctgag 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815478 cagacactggaagctgtgaagagaaagcagtttgccaagtaccacgctgcctctgctgag 5815537
Query: 631 gaacaagcaaccatcgaacgcaacccttataccatcttccaccaggccctgaaaaactgt 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815538 gaacaagcaaccatcgaacgcaacccttataccatcttccaccaggccctgaaaaactgt 5815597
Query: 691 gagcctgtgatcgggctggtacccatcctcaagggtggccatttctaccaggt 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815598 gagcctgtgatcgggctggtacccatcctcaagggtggccatttctaccaggt 5815650
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 508 agtaaattcaccaacatgatgatgaaaggaggaaacaaagtactggccagatccctcatg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5815041 agtaaattcaccaacatgatgatgaaaggaggaaacaaagtactggccagatccctcatg 5815100
Query: 568 acacag 573
||||||
Sbjct: 5815101 acacag 5815106
>Sscrofa_Chr15
|| Length = 157681621
Score = 63.9 bits (32), Expect = 2e-07
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 679 ctgaaaaactgtgagcctgtgatcgggctggtacccatcctcaagggtggccatttctac 738
||||||||||| |||||||||| |||| || || ||||||||| |||| ||| ||||||
Sbjct: 56543731 ctgaaaaactggcagcctgtgat-gggccggcactcatcctcaaaggtgcccacttctac 56543789
Query: 739 caggtccctgtg 750
||||||||||||
Sbjct: 56543790 caggtccctgtg 56543801
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,780,515
Number of extensions: 192
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 6
Length of query: 1419
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1398
Effective length of database: 2,808,413,156
Effective search space: 3926161592088
Effective search space used: 3926161592088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)