Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013296
(648 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535426.1| PREDICTED: similar to ATP synthase, H+ transpor... 305 3e-83
Alignment gi|XP_533119.2| PREDICTED: similar to ATP synthase, H+ transpor... 299 1e-81
Alignment gi|XP_531663.1| PREDICTED: similar to ATP synthase, H+ transpor... 296 1e-80
Alignment gi|XP_534178.1| PREDICTED: similar to ATP synthase, H+ transpor... 292 2e-79
Alignment gi|XP_538189.2| PREDICTED: similar to ATP synthase, H+ transpor... 286 8e-78
Alignment gi|XP_532330.1| PREDICTED: similar to ATP synthase, H+ transpor... 286 8e-78
Alignment gi|XP_539717.2| PREDICTED: similar to ATP synthase, H+ transpor... 281 5e-76
Alignment gi|XP_532506.1| PREDICTED: similar to ATP synthase, H+ transpor... 280 6e-76
Alignment gi|XP_541134.2| PREDICTED: similar to T03G11.3 [Canis familiari... 58 8e-09
>ref|XP_535426.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F0 complex, subunit d isoform a [Canis familiaris].
Length = 161
Score = 305 bits (780), Expect = 3e-83
Identities = 148/161 (91%), Positives = 153/161 (95%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAGRKLALK IDWVAFGEIIPRNQKAIANSLKSWNE L++RLA LPEKPPAIDWAYYKA
Sbjct: 1 MAGRKLALKTIDWVAFGEIIPRNQKAIANSLKSWNEMLTSRLATLPEKPPAIDWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLVDDFEKKFNALKVPVPEDKYT VDAEE+EDVK CAEFLSLSKARIE YEKELE
Sbjct: 61 VAKAGLVDDFEKKFNALKVPVPEDKYTVQVDAEEKEDVKSCAEFLSLSKARIEEYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPH+PIE+L
Sbjct: 121 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHKPIENL 161
>ref|XP_533119.2| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F0 complex, subunit d isoform a [Canis familiaris].
Length = 161
Score = 299 bits (766), Expect = 1e-81
Identities = 145/161 (90%), Positives = 152/161 (94%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAGRKLALK IDWVAFGEIIP+NQKAIANSLKSWNE L++RLA LPEKPPAI+WAYYKA
Sbjct: 1 MAGRKLALKTIDWVAFGEIIPQNQKAIANSLKSWNEMLTSRLATLPEKPPAINWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLVDDFEKKFNALKVPVPEDKYT VDAEE+EDVK CAEFLSLSKARIE YEKELE
Sbjct: 61 VAKAGLVDDFEKKFNALKVPVPEDKYTVQVDAEEKEDVKSCAEFLSLSKARIEEYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKNIIPFDQMT EDLNEVFPETKLDKKKYPYWPH+PIE+L
Sbjct: 121 KMKNIIPFDQMTTEDLNEVFPETKLDKKKYPYWPHKPIENL 161
>ref|XP_531663.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F0 complex, subunit d isoform a [Canis familiaris].
Length = 161
Score = 296 bits (757), Expect = 1e-80
Identities = 144/161 (89%), Positives = 150/161 (93%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAG+KLALK IDWVAFGEIIPRNQKAIANSLKSWNE L++RLA LPEKPPAIDWAYYKA
Sbjct: 1 MAGQKLALKTIDWVAFGEIIPRNQKAIANSLKSWNEMLTSRLATLPEKPPAIDWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLVDDFEKKFNALK PVPEDKYT VDAEE+EDVK CAEF SLSKARIE YEKELE
Sbjct: 61 VAKAGLVDDFEKKFNALKFPVPEDKYTVQVDAEEKEDVKSCAEFSSLSKARIEEYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKNIIPFDQMTIEDLNEVFPETKLDKKKY YWPH+PIE+L
Sbjct: 121 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYSYWPHKPIENL 161
>ref|XP_534178.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F0 complex, subunit d isoform a [Canis familiaris].
Length = 161
Score = 292 bits (747), Expect = 2e-79
Identities = 141/161 (87%), Positives = 149/161 (92%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAGRKLALK IDWVAFGEIIP+NQKAIANSLKSWNE L++RLA LPEKPPAIDWAYYKA
Sbjct: 1 MAGRKLALKTIDWVAFGEIIPQNQKAIANSLKSWNEMLTSRLATLPEKPPAIDWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLVDDFEKKFNALK PV EDKY VDAEE+EDVK CAEFLSLSKAR+E YEKELE
Sbjct: 61 VAKAGLVDDFEKKFNALKFPVLEDKYNVQVDAEEKEDVKSCAEFLSLSKARVEEYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKNIIPFDQMT EDLNEVFPETKLDKKKYPYWPH+PI++L
Sbjct: 121 KMKNIIPFDQMTTEDLNEVFPETKLDKKKYPYWPHKPIDNL 161
>ref|XP_538189.2| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F0 complex, subunit d isoform a [Canis familiaris].
Length = 193
Score = 286 bits (733), Expect = 8e-78
Identities = 141/161 (87%), Positives = 150/161 (93%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAG+KLAL+ IDWVA GEIIPRNQKAIANSLKSWNE L++RLA LPE+PPAI WAYYKA
Sbjct: 1 MAGQKLALETIDWVALGEIIPRNQKAIANSLKSWNEMLTSRLATLPERPPAIYWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLV+DFEKKFNALKVPVPEDKYT VDAEE+EDVK CAEFLSLSKARIE YEKELE
Sbjct: 61 VAKAGLVEDFEKKFNALKVPVPEDKYTVQVDAEEKEDVKSCAEFLSLSKARIEEYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKNIIPFDQMTIEDLNEVFPETKLD KKYPYWPH+PIE+L
Sbjct: 121 KMKNIIPFDQMTIEDLNEVFPETKLD-KKYPYWPHKPIENL 160
>ref|XP_532330.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F0 complex, subunit d isoform a [Canis familiaris].
Length = 160
Score = 286 bits (733), Expect = 8e-78
Identities = 142/161 (88%), Positives = 150/161 (93%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MA RKLALK IDWVAFGEIIPRN+KAIANSLKSWNE L++RLA LPEKPPAIDWAYYKA
Sbjct: 1 MAVRKLALKTIDWVAFGEIIPRNRKAIANSLKSWNEMLTSRLATLPEKPPAIDWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGL+DDFEKKFNALKVPVPEDKYT VDAEE+EDVK CAEFLSLSKARIE YEKELE
Sbjct: 61 VAKAGLLDDFEKKFNALKVPVPEDKYTVQVDAEEKEDVKSCAEFLSLSKARIEEYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKNIIPFDQMT EDLNEVFPETKLD KKYPY+PH+PIE+L
Sbjct: 121 KMKNIIPFDQMTTEDLNEVFPETKLD-KKYPYYPHKPIENL 160
>ref|XP_539717.2| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F0 complex, subunit d isoform a [Canis familiaris].
Length = 192
Score = 281 bits (718), Expect = 5e-76
Identities = 143/175 (81%), Positives = 154/175 (88%)
Frame = +2
Query: 23 ALD*GPPESVKDLKMAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALP 202
A+D GPP VKDLKM G+KLALK I WVAFGEII RNQKAIANSLKS NETL++RLA LP
Sbjct: 19 AVDCGPPGLVKDLKMVGQKLALKTIYWVAFGEIISRNQKAIANSLKSRNETLTSRLATLP 78
Query: 203 EKPPAIDWAYYKATVAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLS 382
EKPPAIDWAY KA VAKAGLVDDFEKKFNALKVPVPEDK+T VDA E++D K CA+FLS
Sbjct: 79 EKPPAIDWAYNKANVAKAGLVDDFEKKFNALKVPVPEDKHTVQVDA-EKKDGKSCAKFLS 137
Query: 383 LSKARIEAYEKELEKMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
LSKAR E YEKELEKMKNIIPFDQMTIEDLN+VFPETKLD KKYPYWPH+ E+L
Sbjct: 138 LSKARTEEYEKELEKMKNIIPFDQMTIEDLNDVFPETKLDNKKYPYWPHKLNENL 192
>ref|XP_532506.1| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial
F0 complex, subunit d isoform a [Canis familiaris].
Length = 160
Score = 280 bits (717), Expect = 6e-76
Identities = 139/161 (86%), Positives = 147/161 (91%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MA RKLALK IDWVAFGEIIPRNQ+AIA SLKSWN+ L++RLA LPEKPPAIDWAYYKA
Sbjct: 1 MARRKLALKTIDWVAFGEIIPRNQEAIAISLKSWNDMLTSRLATLPEKPPAIDWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLVDDF KKFNALKVPVPE+KYT VDAEE+EDVK C EFLS SKARIE Y KELE
Sbjct: 61 VAKAGLVDDF-KKFNALKVPVPENKYTVQVDAEEKEDVKSCTEFLSRSKARIEEYVKELE 119
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPH+PIE+L
Sbjct: 120 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHKPIENL 160
>ref|XP_541134.2| PREDICTED: similar to T03G11.3 [Canis familiaris].
Length = 240
Score = 57.8 bits (138), Expect = 8e-09
Identities = 27/32 (84%), Positives = 32/32 (100%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLK 160
MAG++LALKAIDWVAFGEIIP+NQKAIA+SL+
Sbjct: 1 MAGQELALKAIDWVAFGEIIPQNQKAIASSLQ 32
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,814,953
Number of extensions: 708413
Number of successful extensions: 2918
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2911
Number of HSP's successfully gapped: 9
Length of query: 216
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 117
Effective length of database: 15,574,240
Effective search space: 1822186080
Effective search space used: 1822186080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-013296
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013296
(648 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777149.1| ATP synthase subunit d, mitochondrial [Bos taur... 301 2e-82
>ref|NP_777149.1| ATP synthase subunit d, mitochondrial [Bos taurus].
Length = 161
Score = 301 bits (772), Expect = 2e-82
Identities = 144/161 (89%), Positives = 153/161 (95%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAGRKLALK IDWVAFGEIIPRNQKA+ANSLKSWNETL++RLA LPEKPPAIDWAYYKA
Sbjct: 1 MAGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLVDDFEKKFNALKVP+PEDKYTA VDAEE+EDVK CAEFL+ SK RI+ YEKELE
Sbjct: 61 VAKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KM+NIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIE+L
Sbjct: 121 KMRNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIETL 161
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,729,799
Number of extensions: 703964
Number of successful extensions: 2915
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2899
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 118
Effective length of database: 14,438,750
Effective search space: 1703772500
Effective search space used: 1703772500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013296
(648 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358025.1| PREDICTED: ATP synthase subunit d, mitochond... 327 4e-90
Alignment gi|XP_003131269.1| PREDICTED: ATP synthase subunit d, mitochond... 320 5e-88
Alignment gi|XP_003359818.1| PREDICTED: ATP synthase subunit d, mitochond... 290 6e-79
Alignment gi|XP_003133974.1| PREDICTED: ATP synthase subunit d, mitochond... 290 6e-79
>ref|XP_003358025.1| PREDICTED: ATP synthase subunit d, mitochondrial-like [Sus scrofa].
Length = 161
Score = 327 bits (837), Expect = 4e-90
Identities = 161/161 (100%), Positives = 161/161 (100%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT
Sbjct: 1 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE
Sbjct: 61 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL
Sbjct: 121 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 161
>ref|XP_003131269.1| PREDICTED: ATP synthase subunit d, mitochondrial-like isoform 1
[Sus scrofa].
Length = 168
Score = 320 bits (819), Expect = 5e-88
Identities = 161/168 (95%), Positives = 161/168 (95%), Gaps = 7/168 (4%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT
Sbjct: 1 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQED-------VKRCAEFLSLSKARIE 403
VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQED VKRCAEFLSLSKARIE
Sbjct: 61 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDNVSPLLKVKRCAEFLSLSKARIE 120
Query: 404 AYEKELEKMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
AYEKELEKMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL
Sbjct: 121 AYEKELEKMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 168
>ref|XP_003359818.1| PREDICTED: ATP synthase subunit d, mitochondrial-like [Sus scrofa].
Length = 160
Score = 290 bits (741), Expect = 6e-79
Identities = 144/161 (89%), Positives = 150/161 (93%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAG+KLALKAIDWVA GEIIP+NQKAIANSLKSWNETLSTRL ALPEKPPAIDW YYKAT
Sbjct: 1 MAGQKLALKAIDWVALGEIIPQNQKAIANSLKSWNETLSTRLTALPEKPPAIDWPYYKAT 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
+AKAGLVDDFEKKFNALKVPVPEDKYTA VDAEE+EDVKRCAEFLSLS R EAYEKELE
Sbjct: 61 MAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKRCAEFLSLSNTRTEAYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KM NIIPF+Q+ IEDLNEVF ETKLDKK YPYWPHRPIESL
Sbjct: 121 KM-NIIPFNQIIIEDLNEVFTETKLDKKTYPYWPHRPIESL 160
>ref|XP_003133974.1| PREDICTED: ATP synthase subunit d, mitochondrial-like [Sus scrofa].
Length = 160
Score = 290 bits (741), Expect = 6e-79
Identities = 144/161 (89%), Positives = 150/161 (93%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAG+KLALKAIDWVA GEIIP+NQKAIANSLKSWNETLSTRL ALPEKPPAIDW YYKAT
Sbjct: 1 MAGQKLALKAIDWVALGEIIPQNQKAIANSLKSWNETLSTRLTALPEKPPAIDWPYYKAT 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
+AKAGLVDDFEKKFNALKVPVPEDKYTA VDAEE+EDVKRCAEFLSLS R EAYEKELE
Sbjct: 61 MAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKRCAEFLSLSNTRTEAYEKELE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KM NIIPF+Q+ IEDLNEVF ETKLDKK YPYWPHRPIESL
Sbjct: 121 KM-NIIPFNQIIIEDLNEVFTETKLDKKTYPYWPHRPIESL 160
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,168,648
Number of extensions: 484501
Number of successful extensions: 1880
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1873
Number of HSP's successfully gapped: 4
Length of query: 216
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 121
Effective length of database: 8,978,717
Effective search space: 1086424757
Effective search space used: 1086424757
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013296
(648 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082138.1| ATP synthase subunit d, mitochondrial [Mus musc... 275 2e-74
>ref|NP_082138.1| ATP synthase subunit d, mitochondrial [Mus musculus].
Length = 161
Score = 275 bits (704), Expect = 2e-74
Identities = 128/161 (79%), Positives = 147/161 (91%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAGRKLALK IDWV+F E++P+NQKAI N+LKSWNET RLA+L EKPPAIDWAYY+A
Sbjct: 1 MAGRKLALKTIDWVSFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAK GLVDDFEKK+NALK+PVPEDKYTALVD EE+EDVK CAEF+S S+ RI+ YEK+LE
Sbjct: 61 VAKPGLVDDFEKKYNALKIPVPEDKYTALVDQEEKEDVKSCAEFVSGSQLRIQEYEKQLE 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KM+NIIPFDQMTI+DLNE+FPETKLDKKKYPYWPH+PIE+L
Sbjct: 121 KMRNIIPFDQMTIDDLNEIFPETKLDKKKYPYWPHQPIENL 161
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,385,717
Number of extensions: 582818
Number of successful extensions: 2490
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2471
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 119
Effective length of database: 12,704,067
Effective search space: 1511783973
Effective search space used: 1511783973
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013296
(648 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006347.1| ATP synthase subunit d, mitochondrial isoform a... 293 9e-80
Alignment gi|NP_001003785.1| ATP synthase subunit d, mitochondrial isofor... 236 1e-62
>ref|NP_006347.1| ATP synthase subunit d, mitochondrial isoform a [Homo sapiens].
Length = 161
Score = 293 bits (750), Expect = 9e-80
Identities = 141/161 (87%), Positives = 152/161 (94%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAGRKLALK IDWVAF EIIP+NQKAIA+SLKSWNETL++RLAALPE PPAIDWAYYKA
Sbjct: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLVDDFEKKFNALKVPVPEDKYTA VDAEE+EDVK CAE++SLSKARI YEKE+E
Sbjct: 61 VAKAGLVDDFEKKFNALKVPVPEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEME 120
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKN+IPFDQMTIEDLNE FPETKLDKKKYPYWPH+PIE+L
Sbjct: 121 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 161
>ref|NP_001003785.1| ATP synthase subunit d, mitochondrial isoform b [Homo sapiens].
Length = 137
Score = 236 bits (602), Expect = 1e-62
Identities = 119/161 (73%), Positives = 129/161 (80%)
Frame = +2
Query: 65 MAGRKLALKAIDWVAFGEIIPRNQKAIANSLKSWNETLSTRLAALPEKPPAIDWAYYKAT 244
MAGRKLALK IDWVAF EIIP+NQKAIA+SLKSWNETL++RLAALPE PPAIDWAYYKA
Sbjct: 1 MAGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKAN 60
Query: 245 VAKAGLVDDFEKKFNALKVPVPEDKYTALVDAEEQEDVKRCAEFLSLSKARIEAYEKELE 424
VAKAGLVDDFEKK VK CAE++SLSKARI YEKE+E
Sbjct: 61 VAKAGLVDDFEKK------------------------VKSCAEWVSLSKARIVEYEKEME 96
Query: 425 KMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIESL 547
KMKN+IPFDQMTIEDLNE FPETKLDKKKYPYWPH+PIE+L
Sbjct: 97 KMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL 137
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,261,607
Number of extensions: 694575
Number of successful extensions: 2967
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2956
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 118
Effective length of database: 15,066,692
Effective search space: 1777869656
Effective search space used: 1777869656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-013296
(648 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 858 0.0
Sscrofa_Chr06 801 0.0
Sscrofa_Chr12 268 3e-69
Sscrofa_Chr17 115 3e-23
Sscrofa_Chr08 80 2e-12
>Sscrofa_Chr16
|| Length = 86898991
Score = 858 bits (433), Expect = 0.0
Identities = 540/575 (93%), Gaps = 3/575 (0%)
Strand = Plus / Minus
Query: 44 gagtcggtgaaggatctgaagatggctgggcggaaacttgctctaaaagccattgactgg 103
|||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 31468925 gagttggtgaagaatctgaagatggctgggcagaaacttgctctaaaagccattgactgg 31468866
Query: 104 gtagcctttggggagatcataccccgaaaccagaaggccattgctaactccctgaaatcc 163
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 31468865 gtagccttaggagagatcataccccaaaaccagaaggccattgctaactccctgaaatcc 31468806
Query: 164 tggaatgagaccctctccaccaggttggctgctctacctgagaagccacctgctattgac 223
|||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 31468805 tggaatgagaccctttccaccaggttgacggctctacctgagaagccacctgctattgat 31468746
Query: 224 tgggcttactacaaggccaccgtggcaaaggctggcttggtagatgactttgagaagaag 283
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 31468745 tggccttactacaaggccaccatggcaaaggctggcttggtagatgactttgagaagaag 31468686
Query: 284 tttaatgccctgaaggtccctgtgccagaggataaatacactgctctggtggatgctgaa 343
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 31468685 tttaatgccctgaaggtccctgtgccagaggataaatatactgctcaggtggatgctgaa 31468626
Query: 344 gagcaagaagatgtgaaaagatgtgctgagtttttgtctctctcaaaggccaggattgag 403
|| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 31468625 gaaaaagaagatgtgaaaagatgtgctgagtttttgtctctctcaaacaccaggactgag 31468566
Query: 404 gcatatgagaaagagctggagaagatgaagaacataattccatttgatcagatgacaatc 463
|||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||
Sbjct: 31468565 gcatatgagaaagagctggagaagat---gaacataattccattcaatcagatcatcatc 31468509
Query: 464 gaggacttgaatgaagtcttcccagaaaccaaactagacaagaagaagtatccctactgg 523
||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct: 31468508 gaggacttgaatgaagtcttcacagaaaccaaattagacaagaagacgtatccctactgg 31468449
Query: 524 cctcacaggccaattgagagtttataaacttgcatcttggagaaagctctggccctcgaa 583
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31468448 cctcacaggccaattgagagtttataaacttgcatctcggagaaagctctggccctcgaa 31468389
Query: 584 ttacaaactccggacattaaaaataattacatagt 618
||| | || | ||||||||||||||||||||||||
Sbjct: 31468388 ttatacaccctggacattaaaaataattacatagt 31468354
Score = 533 bits (269), Expect = e-149
Identities = 536/616 (87%), Gaps = 18/616 (2%)
Strand = Plus / Minus
Query: 7 acttccgttccttgcggccttggactgagggcctccggagtcggtgaaggatctgaagat 66
|||||| |||||||| |||||||| || ||||||| || ||| ||||||||||| || ||
Sbjct: 56602328 acttccattccttgctgccttgga-tgtgggcctctggggtcagtgaaggatctcaaaat 56602270
Query: 67 ggctgggcggaaacttgctctaaaagccattgactgggtagcctttggggagatcatacc 126
|||||||| ||||||| |||||||||||| ||||||| |||| |||||||||||||||||
Sbjct: 56602269 ggctgggcagaaactt-ctctaaaagccactgactggatagcatttggggagatcatacc 56602211
Query: 127 ccgaaaccagaaggccattgctaactccctgaaatcctggaatgagaccctctccaccag 186
|| ||||||||||||||||||||||||| | |||||||||||||||||||| || ||||
Sbjct: 56602210 cc-aaaccagaaggccattgctaactccgtaaaatcctggaatgagacccttgcctccag 56602152
Query: 187 gttggctgctctacctgagaagccacctgc------tattgactgggcttactacaaggc 240
||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct: 56602151 gttggctgccatacctgagaagccacctgcacgtgctatggactgggcatactacaaggc 56602092
Query: 241 caccg-tggcaaaggctggcttggtagatgactttgagaagaagtttaatgccctgaagg 299
|| | |||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 56602091 caatgctggcaaag-ctggcttggtagatggctttgagagaaagtttaatgccctgaagt 56602033
Query: 300 tccctgtgccagaggataaatacactgctctggtggatgctgaagagcaagaagatgtga 359
||||||||| |||||||| | ||||| | ||||||||| |||| | ||| |||||
Sbjct: 56602032 tccctgtgctggaggataactgtactgcccatgtggatgctcaaga---aaaaggtgtga 56601976
Query: 360 aaagatgtgctgagtttttgtctctctcaaaggccaggattgaggcatatgagaaagagc 419
|||| |||||| |||||||| ||||| ||||| |||||| ||||| || ||||||| |||
Sbjct: 56601975 aaagttgtgcttagtttttgcctctc-caaagaccaggactgaggaatctgagaaaaagc 56601917
Query: 420 tggagaagatgaagaacataattccatttgatcagatgacaatcgaggacttgaatgaag 479
||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||
Sbjct: 56601916 cggagaagatgaagaacataattccatttgatcagatgaccattgaggacttgaatcaag 56601857
Query: 480 tcttcccagaaaccaaactagacaagaagaagtatccctactggcctcacaggccaattg 539
|| |||||||||||||| |||| |||||| ||||||| |||||||||| |||||||||
Sbjct: 56601856 tcctcccagaaaccaaattagataagaag---tatccctgctggcctcacgggccaattg 56601800
Query: 540 agagtttataaacttgcatcttggagaaagctctggccctcgaattacaaactccggaca 599
|||||||||||||||| ||| |||||||||||||||||| || ||| |||||| |||||
Sbjct: 56601799 agagtttataaacttgtgtctgggagaaagctctggccctagagttataaactctggaca 56601740
Query: 600 ttaaaaataattacat 615
||||||||||||||||
Sbjct: 56601739 ttaaaaataattacat 56601724
>Sscrofa_Chr06
|| Length = 157765593
Score = 801 bits (404), Expect = 0.0
Identities = 539/582 (92%), Gaps = 4/582 (0%)
Strand = Plus / Minus
Query: 35 gggcctccggagtcggtgaaggatctgaagatggctgggcggaaacttgctctaaaagcc 94
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 111399479 gggcctccagagtccgtgaaggatcccaagatggctgggcggaaacttgctctaaaagcc 111399420
Query: 95 attgactgggtagcctttggggagatcataccccgaaaccagaaggccattgctaactcc 154
|||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct: 111399419 tttgactaggtagcctttggggagatcataccttgaaaccagaaggccactgctaacttc 111399360
Query: 155 ctgaaatcctggaatgagaccctctccaccaggttggctgctctacctgagaagccacct 214
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 111399359 ctgaaatcctggaataagaccctctccaccaggttggctgctctaccttagaagccacct 111399300
Query: 215 gctattgactgggcttactacaaggccaccgtggcaaaggctggcttggtagatgacttt 274
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 111399299 gctattgactgggcttactataaggctaccatggcaaaggctggcttggtagatgacttt 111399240
Query: 275 gagaagaagt-ttaatgccctgaaggtccctgtgccagaggataaatacactgctctggt 333
|||||||||| | |||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 111399239 gagaagaagtcatcttgccctgaagttccctgtgccagaggataaatatactgctcaggt 111399180
Query: 334 ggatgctgaagagcaagaagatgtgaaaagatgtgctgagtttttgtctctctcaaaggc 393
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 111399179 ggatgctgaagaaagagaagatgtgaaaaggtgtgctgagtttttgtctctctcaaagac 111399120
Query: 394 caggattgaggcatatgagaaagagctggagaagatgaagaacataattccatttgatca 453
||||||||||| |||||||||||||||||| |||| |||||||||||||||||| |||
Sbjct: 111399119 caggattgaggaatatgagaaagagctggacaagacgaagaacataattccatt---tca 111399063
Query: 454 gatgacaatcgaggacttgaatgaagtcttcccagaaaccaaactagacaagaagaagta 513
|||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 111399062 gatgaccattgaggacttgaatgaagtcttcccagaaaccaaattagacaagaaaaagtg 111399003
Query: 514 tccctactggcctcacaggccaattgagagtttataaacttgcatcttggagaaagctct 573
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 111399002 tccctactggcctcacaggccaattgagagtttattaacttgcatctcggagaaagctct 111398943
Query: 574 ggccctcgaattacaaactccggacattaaaaataattacat 615
|| |||||||||| |||||| |||||||||||||||||||||
Sbjct: 111398942 ggtcctcgaattataaactctggacattaaaaataattacat 111398901
>Sscrofa_Chr12
|| Length = 63588571
Score = 268 bits (135), Expect = 3e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 54 aggatctgaagatggctgggcggaaacttgctctaaaagccattgactgggtagcctttg 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6320537 aggatctgaagatggctgggcggaaacttgctctaaaagccattgactgggtagcctttg 6320596
Query: 114 gggagatcataccccgaaaccagaaggccattgctaactccctgaaatcctggaatgaga 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6320597 gggagatcataccccgaaaccagaaggccattgctaactccctgaaatcctggaatgaga 6320656
Query: 174 ccctctccaccaggt 188
|||||||||||||||
Sbjct: 6320657 ccctctccaccaggt 6320671
Score = 196 bits (99), Expect = 1e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 185 aggttggctgctctacctgagaagccacctgctattgactgggcttactacaaggccacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6320936 aggttggctgctctacctgagaagccacctgctattgactgggcttactacaaggccacc 6320995
Query: 245 gtggcaaaggctggcttggtagatgactttgagaagaag 283
|||||||||||||||||||||||||||||||||||||||
Sbjct: 6320996 gtggcaaaggctggcttggtagatgactttgagaagaag 6321034
>Sscrofa_Chr17
|| Length = 69701581
Score = 115 bits (58), Expect = 3e-23
Identities = 421/537 (78%), Gaps = 15/537 (2%)
Strand = Plus / Plus
Query: 77 aaacttgctctaaaagccattgactgggtagcctttggggagatcataccccgaaaccag 136
|||||||||||||||| ||||| |||| ||| |||| |||||||||| | | |||
Sbjct: 43248477 aaacttgctctaaaagtcattggctggagagcttttgaagagatcatactctaagaccca 43248536
Query: 137 aaggccattgctaactccctgaaatcctggaatgagaccctctccaccaggttggctgct 196
||||||| |||||||| ||||||||||| |||| ||| |||| || |||| |||||| |
Sbjct: 43248537 aaggccactgctaacttcctgaaatcctagaataagatcctcacctccagattggctacc 43248596
Query: 197 ctacctgagaagccacctgctattgactgggcttactacaaggccaccgtggcaaaggct 256
||||||||||| |||||| |||| ||| || |||||||||| |||| |||||
Sbjct: 43248597 ctacctgagaa-ccacctactatgcactccact---tacaaggccagtgtggtgaaggcg 43248652
Query: 257 ggcttggtagatgactttgagaagaagtttaatgccctgaaggtccctgtgccagaggat 316
| ||||| ||| |||||||| ||||||||||||||||||||| | | ||| || || ||
Sbjct: 43248653 gccttggcagacgactttgaaaagaagtttaatgccctgaagtttctcgtgacacagcat 43248712
Query: 317 aaatacactgctctggtggatgctgaagagcaagaagatg-tgaaaagatgtgctgagtt 375
||||| |||| | || ||| || ||| || |||||| | | |||||||||||
Sbjct: 43248713 aaatatactgtccaggaggacactaaag---aaaaagatgcacgagtgctgtgctgagtt 43248769
Query: 376 tttgtctctctcaaaggccaggattgaggcatatgagaaagagctggagaagatgaagaa 435
||| ||| ||| ||||| ||||||| | ||||||||||||||||||||||||||| |
Sbjct: 43248770 tttttctttcttaaaggtgcggattgaagaatatgagaaagagctggagaagatgaatga 43248829
Query: 436 cataattccatttgatcagatgacaatcgaggacttgaatgaagtcttcccagaaaccaa 495
|||| ||||| |||| | || || ||| ||||||||||||||||| |||||||||
Sbjct: 43248830 catatttccacttga----gtaaccatgaagggcttgaatgaagtcttcctagaaaccaa 43248885
Query: 496 actagacaagaagaagtatccctactggcctcacaggccaattgagagtttataaacttg 555
| ||||| ||||||||| || | |||| |||| ||||| ||||| |||||||| |||
Sbjct: 43248886 attagac---aagaagtattccaagtggcttcaccagccaactgagaatttataaatttg 43248942
Query: 556 catcttggagaaagctctggccctcgaattacaaactccggacattaaaaataatta 612
|| ||| ||||||| | |||| ||||||||||| |||||||||||| |||||
Sbjct: 43248943 agtccgggaagaagctctagtcctcatattacaaactctggacattaaaaacaatta 43248999
>Sscrofa_Chr08
|| Length = 148491826
Score = 79.8 bits (40), Expect = 2e-12
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 437 ataattccatttgatcagatgacaatcgaggacttgaatgaagtcttcccagaaaccaaa 496
||||||||||||||||||||||| | |||||| |||||||| |||||| |||||||||
Sbjct: 105053747 ataattccatttgatcagatgaccactgaggacatgaatgaaatcttccaggaaaccaaa 105053688
Query: 497 ctagacaagaag 508
|||||||||||
Sbjct: 105053687 ttagacaagaag 105053676
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,216,807
Number of extensions: 531
Number of successful extensions: 531
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 11
Length of query: 648
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 627
Effective length of database: 2,808,413,156
Effective search space: 1760875048812
Effective search space used: 1760875048812
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)